>input_sequence_74042
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-----------------------------------------------------------------ATGGCCCGTGAGGAA
GGTTCCCGCATCACCGGAAGCATATCTAC----GGGCGAGAGGGCGGCC------------------GGCGAGGAGCGCC
CGCTGAAGCAATGCCGACATGCTTCGGCGGAGAAGCTCGCGCTGAAGCCGTGCGCCACCAAAAGGAAGGCAGCGGCGGCA
GACGACGAGAAGCTGCGCAGCACCAAGAGGAAACCGCCGGCGATTGGTTCTTGTTCCACGGCGCAGGACGCTGGCTATGT
GAAGTATGCTCCGGGGAAAAAAATGACGCGGCTGCCGCAGGAGGATGTCGCTCGGATCCTCAGCCGTGTGATCGATGATG
TCAATGACGCCCCTTCCGACTTCAAGGCCCTCAAGCTCCAAAACCCTGACCTGATTCCTTCGCCGGAGGAGGAGCTGGAC
GAGGAGATGGTGGCATATTATGCCGGCGTGCGTGCCTACTATAAAATCGGAGAGGACTACCTCAAATTCCAGGCATGGGT
ACGCAGCGAGTACGCCAAGAACGGCTACGTCGAGGTCGATGACGACTTCCTCGCAAAGAGGGCCAGGGTCCG-GCAGACA
GCGACAGAGCACGGGAGGATATGCTCAACACGATCGACTTCTCTGACGACGACGATGATCTGA-----------------
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>chr2D_1_TraesCS2D01G483200
GGGCTGGTCCAATGGTGTCGGTTTTCTTCTTCTTTTGTCCCTTTTCCCATCTTTTTCTTTCTTCCTTCATTTTTGTTATT
TTTTTCTTTCTTTGTCTTATTTGTTCATTTTATTTTATGTTTGTTTGCCCCCTTTATGTTGTTTTCTGTCTTTACTTTTC
TATTTTTGTTTTCATTTTTTTTCCACTATTCTCTTG--AGTAAAACACAAGATTTTTTTCACGACATACATGGACACTTA
TTTTAACTTATGGATGTTTTTTAATAGAACATGATCGTCTATGCAAGATGTGAGAACATTTA--TGTTTATGCACAAGAA
TTTTCATAAGAACATATAAATATTC-----------TAGAAACATTTATTTTTATATGTGTGCTCATTTTATTGCAACAT
ATTTATATTTTTCACGACATACTCAGATA-ATTGTTTCAAGAAATACAAACTATTTCTTCATTATATGGCCATTTCTTTT
AAGATCTATGAACATTTTTAATAGGGTATGTCTAGGGCACATCTAGATGTGCCCTACTTATTGCACATCTAAGTGGGTGA
ATCAAGCATAAAGAGGAAAAGAAAAAAAGAAAAAGGAAATATGCACACGAATCTCGACGTAAGTTCAATGATATAAGACT
TAGATGTGCAATACTTATCGCACATCTAGTGCTTTAGCAAAACTGTTTTCAATATTATAAAATATGTTAACAATCTTTAT
CTGTATATGAATATATTTTTAAAATACATGAACAGGTTTTTATCGGAAGACT-ATGGAGGAACTCCGACTCCGAGGTGGA
CTTGGTCGAAGCA-ACTCAAAAAGGATT-----TCTTTCGTCTCCGAGTTCAA--CTCCACTCACACTCCTATAACAATT
AGACGCGCTAACGAAGCCTCTGCCTGTATATAATCTCCAGACGGCGCTGGCTAATTCGAGAGCCAGGGTTCCGCAATCAT
CCGCCAAATCTCGCGGCGTGGTCAGAGAGACGACGCGCGGGAGATCCGATCAGCCGGACCGGCCAATGGCCCGTGAGGAA
GGTTCCCGCATCACCGGAAGCATATCTAC----GGGCGAGAGGGCGGCC------------------GGCGAGGAGCGCC
CGCTGAAGCAATGCCGACATGCTTCGGCGGAGAAGCTCGCGCTGAAGCCGTGCGCCACCAAAAGGAAGGCAGCGGCGGCA
GACGACGAGAAGCTGCGCAGCACCAAGAGGAAACCGCCGGCGATTGGTTCTTGTTCCACGGCGCAGGACGCTGGCTATGT
GAAGTATGCTCCGGGGAAAAAAATGACGCGGCTGCCGCAGGAGGATGTCGCTCGGATCCTCAGCCGTGTGATCGATGATG
TCAATGACGCCCCTTCCGACTTCAAGGCCCTCAAGCTCCAAAACCCTGACCTGATTCCTTCGCCGGAGGAGGAGCTGGAC
GAGGAGATGGTGGCATATTATGCCGGCGTGCGTGCCTACTATAAAATCGGAGAGGACTACCTCAAATTCCAGGCATGGGT
ACGCAGCGAGTACGCCAAGAACGGCTACGTCGAGGTCGATGACGACTTCCTCGCAAAGAGGGCCAGGGTCCG-GCAGACA
GCGACAGAGCACGGGAGGATATGCTCAACACGATCGACTTCTCTGACGACGACGATGATCTGACGAGAACAA--------
AGATGGTACTGAATCCGTATCATCTGTCATGAACAATCTGCCGTCTTGCTTTTAAGTTTAGCCATGCGTCTCTTCCCTCA
CATTAACTGTGATCCATCGATGTTAT------------------------------------------------------
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-------------------TACTTTGATCCATGTCAGACTGTGCTAAGCTAAGCACTGATGAATTTCTTGTA--------
ATTCACTGTGTTAT----ATCGATCAGTTTACCATGAGGATGCAGTTCTGTTCTTGCGTTTGCAGTTTTAAGGCCTG--C
ACGACAATACAGTAGATGTTCCTGCGAATTATCACTAGCATGGGTAGATTAATCAGTTCCAGTGCCTTGACGAGATCAAT
TCACCGAGATACTGGCACTGGTAGTGAGAAGTACACTAATTGGAAAC-------TCTGCTCAGCCCCTCTACAATAAATT
CAGAACCCATCAACTAAAACAAGACCAGAACTTTTCACAAACTCTCAAGCATTGGAA-----GTAGTTATCTGGGTAAAC
AGCGGAGAATTTGCGGGGAAGGAAGCAGGGGAAGAAGTGGTTCTGTAGTTCTGAACTTTGTTGTCTGATT---CAGAGGA
AGCCAGCGTTTTATACTGACGCTGCTCGCACACACACCGGCTCATGG--CCAACGCATCATGCAATGGCCACACCTT---
--------------GCCAATCATCATTAGTTGGCCCAACACCTTGTTAAAAGAGAACGACAGAG--------CAGTGACA
GAGATGACAAATGAACCAACAGTCTTCGATTTCATTAATAGACATGGTATATATCCCTAAAAAAATAAACATGGTATATA
ACTATATATGCGTGGTGAGGGGGGTGAGGCGTTTCATTAATAGACAAGGTATTTCGTCCTGAAATTTACGCACTTGTGCG
CATTGTGTCTTTAAGTTTTTCTTAAAAAAGAGGATATACCCCGGCCTCTGCAGCTATTTTATTAATTTCACAAAGACCAA
AAAAGTAATACATCAATAAATCTAAAGCCACCATCTAAGCAACATTTGTTGCTACTCTTATCCTCTTGATGTTGGTGTGC
>chr2B_166
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-----TTGTTTTCTATTTTTGTTTTCATTTCTTTTTTTAGCAAAACACAAGAATTTTTTCACAAGATACATGGACACTTA
TTTTAACTTATGAATGCTTTT-AATAGAACATGATCGTCTATGCAAGATGTGAGAACATTTATATGTTTATGCACAAGAG
CTTTCATAAGAATACATAAGTATTTTATTGAAAAAATACAAACATTTATTTTTATATATGTGCTCATTTTATTGCAACAT
ATTTATATTTTTCACGAGATACTCAGGCATATTGTTTCAAGAAATACAAACTATTTCTTCATTATATGACCATTTCTTTT
AAGATCTGTGAACAGTCTTT------------------------------------------------------------
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--------------------------------------------------AATATTGTAAAATACGTTAACAATTTTTAT
ATTTATATGAATATATTTTTTAAATACATAGACAGGTTTCTATCGGAAGACCCATGGAGGAACTCTGACTCCGAGGTGGA
CTTGGTCGAAGCAACAGAAAAT--GATA-----TTTTGCGTCTCTGAGTTCAA--CTCCACTCGCACTCCT-----AATT
AGATGCGCTAACAAAGCCTCTGCCTGTATATAATCTTTCCTCCTCCTCCCCTAATTCGAGAGCCAGGGTTCCGCAACCAT
CCACCAAATCTCGCGGCGTGGTCAGTGAGACGAGGCGCGGGAGATCTGATCAGCCGAT-----CAATGGCCGGTGAGGAG
CCTTCGCGCATCACCGGAAGCATGTCGACT-GGGGGCGAGAGGGCGGCCAAGCATGCGGTGGCCGCCGGCGACCTGCGCC
CTCTGAAGCGATGCCGACATGCTTCGACGGAGAAGCGCGCGCTGAAGCCGTGCGCCACCAAAAGGAAGGCCGCGGCGGCA
GGCGACGAGAGGCTGCGCACCGCCAAAAGGAAGGCGCCGGCGATTGCTTCTTGTTCCACGGTGCAGGAGGCTGGCTACGT
GAAGTATGCTCCGGGGAAAAAAATGACGCGGCTGCCGCAGGAGGATGTCGCTCGGATCCTCGGCCGTGTGATCAATGATG
ACCAGAACGCCCCTTCTGACTTCAAGGCCCTCAAGCTCCAAAACCCTGAACTGCTTCCTTCGCCGGAGGAGGAGCTGGAC
GAGGAGACGGTGGAATATTATGCCGGCGTGCGTGCCTACTATAAAATCGGAGAGGACTACCTCAAATTCCAGGCATGGGT
GCGCAGTGAGTACGCCAAGAACGGCTACGTCGAGGTCGATGACGACTTCCTCGCTAAGAGGGCCAGAGTCCGAGCAGACA
GCGACGGAGCACGGGAGGAGATGCTCAACACGATCGACTTCTCGGACGACGACGAAGATCTGAAGAGACTTCTTACGACC
AGATGGTACTGAATCCATATCATCTGTCATGAACAATCTGCCGTCTTGCTTTTAAGTTTAGCGATGCGTGA---------
-ATTAACTGTGATCCACCGATATT--------------------------------------------------------
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-------------------TACTTTGATCCATGTCAAACTGTGCTAAGCTAAGCACTGATGATGAACGCCTTGTATAATG
ATCCACTGTGTCATATCGATCGATCAGTTTACCATGAGGATGCAGTTCTGTTCTTGTGTTTGCAGTTTTAAGGCTTG--C
ACGACAATACAGTAGATGTTGCTGCGAATTATCACTAGCATGGGTAGATTAATCAGTTGTAGTGCCTTGACGAGATCAAT
TCACCGAGATACTGGCAGTGGTAGTGAGAAGTACAGTATTTGGATACTCTGCTGTCTGCTCAGCACCCCTATAAAAAATT
CAGAACCCATCAACTAAAACAAGACCAGAACATTTCACAAACTCTCAAGCAATGGAGTGGAGGTAGTTATTTGGGTAAAC
AGCGAAGAATTTGCGGGGAAGCAAGCAGGGGAAGAAGTGGTTCTGTAGTT--------AGTTGTCTGATT---CAGAGGA
AGCCAGCGTTTTATACTGACGCTGCTCGCGCACACACCGGCTCATGGG-CCAACGCAACGTGCAATGGCCACACCTTACA
ACGGCCCACCACCTAATCAACTG-----GTTAGCCCGACACCTTGTTAAAAGAGAAGGACAGAGCAGCGAGCCAGTGACA
GAGATGACAAATGAACCAACAGTCTTTGATTTCATCAACAGACATGCTATATA---------------------------
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>chr2A_760
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--------------------------------------------------------GAGGAACTCCGACTCCGAGGTGGG
CTTGGTCGAAGCAAACTCAAAAAGGATTTATTTTTTTTCGTCTCCGAGTTCAACTCTCCACTCGCACTCCT-----AATT
AGACGCGCTAACAAAGCCCCTGCCTGCACATAATCCTTCCTCCTCCTGCCTTAATTCGAGAGCCAGGGTTCCGCAACCAT
CCACCAAATCTCGGGGCGTGGTCAGTGAGACGAGGCGCGGGAGATCTAATCAACCGAT-----CAATGGCCGGTGAGGAG
GGTCCGCGCATCACCGGAAGCATGTCGACGGGGGGGCGAGAGGGCGGCCAAGCATGCGGCGGCCACCGGCGAGGAGCGCC
CGCTGAAGCGATGCCGTCATGCTTCGACGGAGAAGCGCGCGCTGAAGCCGTGCGCCGCCAAAAGGAAGGCGGCGGCGGCA
GACGACGAGAAGCTGCGCACCGCCAAAAGGAAGGCGCCGGCGATTGCTTCTTGTTCCACGGCGAACGAGGCTGGCTATGT
GAAGTATGCTCCAGGGAAGAAAATGACGCGGCTGCCGCAGGAGGACGTCGCTCGGATCCTCGCCCGTGTGATCGATGATG
CCGAGGATGCCCCTTCCGACTTCAAGGCCCTCAAGCTCCAAAACCCTGAACTGCTCCCTTCGCCGGAAGAGGAGCTGGAC
GAGGAGATGGTGGAATATTATGCCGGCGTGCGTGCCTACTATAAAATCGGAGAGGACTTCCTCAAATTCCAGGCATGGGT
ACGCAGTGAGTACACCAAGAACGGCTACGTCGAGGTCGATGACGACTTCCTCGCTAAGAGGGCCAGAGTCCGAGCAGACA
GCGACAGAGCACGGGAGGATATGCTCAACACGATCGACTTCTCTGACGACGACGATGATCTGAAGAGACTTCTTACGACC
AGATGGTTCTGAATCCGTATCATCTGTCATGAACAATCTGCCGTCTTGCTTTTAAGTTTAGTCATGTGTCTCTTCCGTCA
CATAAACTGTGATCCACCGATTATTATAGTCCCTCCATTTTTATATACAAGGTCACTATCAAAATAACAATTTGCAGATA
TACAAGGCCACTAACACTAATCGATGCAATATTAATGGTGTTTGCCTCGTAGTACTAGTAAAGGAGGACATTAACTATCC
CTTGCATGCATGCGGGAGTGAGAGCATTGGCTTGATGTACATGAAAGAGAAGAATACACATTAATTTACACGGCAAACAA
GGAGACAAGCTGCCTTGCAACATTGATTTAGAAGACATTAACTTTTGCCTTGGTACCTGTAATATGGATTTGTGGCCTTG
TATACAAAAATGGAGGGAGTACTTTGATCCATGTCAGACTCTGCTAAGCTAAGCACTGA---TGAACGCCTTGTGTA---
---------------------------------ATGAGGATGCAGCTATGTTCTTGTGTTTGCAGTTTTAAGGCTTATAC
ACGACAATACAGTAGATGTTGCTGCGAATTATCACTAGCATGGGTAGATTAATCAGTTCCAGTCCCTTGACGAGATCAAT
TCACCGAGATACTGGCAGTGGTAGTGAGAAGTACAGTAATTGGAAAC-------TCTGCTCAGCCCCTCTATAAAAAATT
CAGAAGCCATCAACTAAAACAAGATCAGAACTTTTCAGAAACTCTCAAGCAT-----TGGAGGTAGTTATTTGGGTAAAC
AGCGGAGAATTTGCGGGGAAGGAAGCAGGGGAAGAAGTGGTTCTGTAGTTCTGAACTTAGTTGTCTGATTCAGCAGAGGA
AGCCAGCGTTTTATACTGATGCTGCTCGCACACACACCGGCTCATTGGACCAACACGACATGCAATGGCCACACCTTGCC
GCAGCCCATCATCGGCCAATCATCATTATTTGGCCCAACACCTTGTTAAAAGGGAACGACAGAG--------AAGTGACA
GAGATGACGAATGAAACAA-------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------SS-----S-SSS-SS----S--S----S-----------S---------S-S---------------
------------S---S----S---------------------------------------------------------S
S-----------S-S----S----S-------------S------------------S----------------------
-----------------S--------SS----------------------------------------S-----------
-------S------S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------S---------S-----
S-S-----------------S--------SS--------S-----------S----------------------------
----------------------------------S----------------------------S-------SSSSS----
------------S-----------------------SSSSS-SS-SSSSS--------------------------S---
--S----------------------S-------S------------S---------SSSSSSS--------S-------S
-----S-----------------S--S-----------------------------------------------------
---------S----------------S---------S---------------------------------S---------
-------------------S-S----S-----SS------------S---------------------S-----------
-------------------------------------------------------------S------------------
S-S-S--------------------------------------------S---S--------------------------
-------------S------------------------------------------------------------------
------S-----------------------------------------------S-----------S-------------
---------------------------------------------------------------S----SSSS--------
----------------------------------------------------------------------------S---
----------------S----S--SS------------------------------------------------------
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--------------------------------------------------------------SSSS-SSS-S--------
--S--------S--------------------------------------------S-----------------S-----
--------------------S-----------------------------------------------------------
-----------------S-----------------S-----------------------------------S--S-----
--------------------------------------------------------S-------------S---------
----------------------------------------------------------S---------------------
---------------------------------------------------------S----------------------
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--------------------------S--------S--S-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_929
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-----------------------------ATAATCTCCAGACGGCGCTG-------------------------------
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>reverse_2820
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-------------------GGGGGTGAGGCGTTTCATTA-----------------------------------------
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