Multiple sequence alignment - TraesCS2D01G474900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G474900 chr2D 100.000 3632 0 0 1 3632 577596719 577600350 0.000000e+00 6708.0
1 TraesCS2D01G474900 chr2D 86.142 801 72 17 1522 2310 577573155 577573928 0.000000e+00 828.0
2 TraesCS2D01G474900 chr2D 87.692 195 11 6 1293 1480 577573153 577573341 7.900000e-52 215.0
3 TraesCS2D01G474900 chr2A 95.892 3384 99 16 266 3632 715818731 715815371 0.000000e+00 5443.0
4 TraesCS2D01G474900 chr2B 94.296 3366 117 25 301 3632 695000230 694996906 0.000000e+00 5083.0
5 TraesCS2D01G474900 chr2B 87.975 158 18 1 8 164 695000511 695000354 6.190000e-43 185.0
6 TraesCS2D01G474900 chr7B 80.800 125 18 2 9 133 125354771 125354889 3.860000e-15 93.5
7 TraesCS2D01G474900 chr1A 83.908 87 8 5 72 155 301205238 301205321 1.080000e-10 78.7
8 TraesCS2D01G474900 chr1A 100.000 29 0 0 209 237 14616122 14616094 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G474900 chr2D 577596719 577600350 3631 False 6708.0 6708 100.0000 1 3632 1 chr2D.!!$F1 3631
1 TraesCS2D01G474900 chr2D 577573153 577573928 775 False 521.5 828 86.9170 1293 2310 2 chr2D.!!$F2 1017
2 TraesCS2D01G474900 chr2A 715815371 715818731 3360 True 5443.0 5443 95.8920 266 3632 1 chr2A.!!$R1 3366
3 TraesCS2D01G474900 chr2B 694996906 695000511 3605 True 2634.0 5083 91.1355 8 3632 2 chr2B.!!$R1 3624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 288 0.179040 TTCGGAGTTCGTTGGGCTTT 60.179 50.000 0.00 0.0 40.32 3.51 F
1233 1276 0.241213 TTCTCACTGAAGGCGTCTCG 59.759 55.000 1.41 0.0 0.00 4.04 F
1239 1282 1.671845 ACTGAAGGCGTCTCGATACTC 59.328 52.381 1.41 0.0 0.00 2.59 F
2352 2414 2.233271 CATGTTGGGATATCAGGGCAC 58.767 52.381 4.83 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1282 0.820871 GTACAGGGACAGCTCTGAGG 59.179 60.0 6.83 0.0 45.92 3.86 R
2352 2414 0.679002 CTCCACACATCCTGGCCTTG 60.679 60.0 3.32 0.0 0.00 3.61 R
2598 2660 0.954452 CTCTTTGAACAGGTGGTGCC 59.046 55.0 0.00 0.0 37.58 5.01 R
3272 3350 0.897621 CAAAAAGGGGGCCAAGCTAG 59.102 55.0 4.39 0.0 0.00 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.366061 GGTGAGAAACATTTGAAAATAGCACC 59.634 38.462 0.00 0.00 33.70 5.01
37 38 5.219633 ACATTTGAAAATAGCACCGTTCAC 58.780 37.500 0.00 0.00 30.00 3.18
39 40 1.195900 TGAAAATAGCACCGTTCACGC 59.804 47.619 0.00 0.00 38.18 5.34
48 49 1.167781 ACCGTTCACGCCCGAATTTT 61.168 50.000 0.00 0.00 38.18 1.82
53 54 3.377439 GTTCACGCCCGAATTTTTCTTT 58.623 40.909 0.00 0.00 0.00 2.52
95 96 6.456718 CGTTCAAACTTCACCAAATTTTGCAT 60.457 34.615 3.50 0.00 37.40 3.96
99 100 6.998968 AACTTCACCAAATTTTGCATGAAA 57.001 29.167 19.29 0.00 35.32 2.69
118 119 5.072055 TGAAAATCACACACATGGACATCT 58.928 37.500 0.00 0.00 0.00 2.90
125 126 1.542915 ACACATGGACATCTTGCTTGC 59.457 47.619 0.00 0.00 0.00 4.01
216 230 0.670546 CCACTGTACTGTTGAGCCCG 60.671 60.000 2.16 0.00 0.00 6.13
219 233 2.436115 GTACTGTTGAGCCCGGGC 60.436 66.667 39.29 39.29 42.33 6.13
222 236 4.335647 CTGTTGAGCCCGGGCACT 62.336 66.667 45.13 28.48 44.88 4.40
223 237 4.641645 TGTTGAGCCCGGGCACTG 62.642 66.667 45.13 9.62 44.88 3.66
235 249 2.213499 CGGGCACTGAAGTGGATATTC 58.787 52.381 12.20 0.00 45.72 1.75
236 250 2.213499 GGGCACTGAAGTGGATATTCG 58.787 52.381 12.20 0.00 45.72 3.34
237 251 2.420129 GGGCACTGAAGTGGATATTCGT 60.420 50.000 12.20 0.00 45.72 3.85
238 252 3.270877 GGCACTGAAGTGGATATTCGTT 58.729 45.455 12.20 0.00 45.72 3.85
239 253 3.063997 GGCACTGAAGTGGATATTCGTTG 59.936 47.826 12.20 0.00 45.72 4.10
240 254 3.063997 GCACTGAAGTGGATATTCGTTGG 59.936 47.826 12.20 0.00 45.72 3.77
241 255 3.623060 CACTGAAGTGGATATTCGTTGGG 59.377 47.826 2.35 0.00 42.10 4.12
242 256 2.614057 CTGAAGTGGATATTCGTTGGGC 59.386 50.000 0.00 0.00 0.00 5.36
243 257 2.238646 TGAAGTGGATATTCGTTGGGCT 59.761 45.455 0.00 0.00 0.00 5.19
244 258 3.279434 GAAGTGGATATTCGTTGGGCTT 58.721 45.455 0.00 0.00 0.00 4.35
245 259 3.366052 AGTGGATATTCGTTGGGCTTT 57.634 42.857 0.00 0.00 0.00 3.51
246 260 3.279434 AGTGGATATTCGTTGGGCTTTC 58.721 45.455 0.00 0.00 0.00 2.62
247 261 3.054361 AGTGGATATTCGTTGGGCTTTCT 60.054 43.478 0.00 0.00 0.00 2.52
248 262 3.312697 GTGGATATTCGTTGGGCTTTCTC 59.687 47.826 0.00 0.00 0.00 2.87
249 263 3.199946 TGGATATTCGTTGGGCTTTCTCT 59.800 43.478 0.00 0.00 0.00 3.10
250 264 4.407621 TGGATATTCGTTGGGCTTTCTCTA 59.592 41.667 0.00 0.00 0.00 2.43
251 265 5.104693 TGGATATTCGTTGGGCTTTCTCTAA 60.105 40.000 0.00 0.00 0.00 2.10
252 266 5.820947 GGATATTCGTTGGGCTTTCTCTAAA 59.179 40.000 0.00 0.00 0.00 1.85
253 267 6.486993 GGATATTCGTTGGGCTTTCTCTAAAT 59.513 38.462 0.00 0.00 0.00 1.40
254 268 7.013369 GGATATTCGTTGGGCTTTCTCTAAATT 59.987 37.037 0.00 0.00 0.00 1.82
255 269 6.590234 ATTCGTTGGGCTTTCTCTAAATTT 57.410 33.333 0.00 0.00 0.00 1.82
256 270 6.399639 TTCGTTGGGCTTTCTCTAAATTTT 57.600 33.333 0.00 0.00 0.00 1.82
274 288 0.179040 TTCGGAGTTCGTTGGGCTTT 60.179 50.000 0.00 0.00 40.32 3.51
288 302 3.352648 TGGGCTTTCTCTAAATTTCCCG 58.647 45.455 0.00 0.00 34.09 5.14
317 358 2.159028 AGAAGTTCGCTGGGCTTAGATC 60.159 50.000 0.00 0.00 0.00 2.75
337 378 1.000060 CTCACCGAAACGTCCTTACCA 60.000 52.381 0.00 0.00 0.00 3.25
365 406 2.271173 GGGCCCAGGTTAACTCCG 59.729 66.667 19.95 0.00 0.00 4.63
453 494 2.387445 CGCCGTCGCATTTCTTCCA 61.387 57.895 0.00 0.00 34.03 3.53
647 688 2.583593 GCGGTGCTCGTCAGATCC 60.584 66.667 0.00 0.00 41.72 3.36
648 689 2.278206 CGGTGCTCGTCAGATCCG 60.278 66.667 0.00 0.00 0.00 4.18
729 770 1.834822 CTCCCCGTCCCATCTCCTC 60.835 68.421 0.00 0.00 0.00 3.71
803 845 1.429148 GACTGCGGGCAAGGTAATCG 61.429 60.000 0.00 0.00 0.00 3.34
834 876 0.537653 CTTCCCTCGTTCCCCTTCTC 59.462 60.000 0.00 0.00 0.00 2.87
880 922 0.779997 ACCCAGGTGGAGAAAGCAAT 59.220 50.000 0.00 0.00 37.39 3.56
909 951 4.553330 AGAGGAAATGTACATGTTCCGT 57.447 40.909 26.58 20.59 44.64 4.69
923 965 2.678836 TGTTCCGTTTGTTGTTCGTCAT 59.321 40.909 0.00 0.00 0.00 3.06
941 983 9.856488 GTTCGTCATATCTCCTGCTAATAATAA 57.144 33.333 0.00 0.00 0.00 1.40
957 999 9.057089 GCTAATAATAATACTACCATGGATGCC 57.943 37.037 21.47 0.00 0.00 4.40
985 1027 9.325198 GTTTCCTGTCCTTATGAAAAACAATTT 57.675 29.630 0.00 0.00 0.00 1.82
1000 1043 6.969993 AAACAATTTTGAACCTGTAGGCTA 57.030 33.333 0.00 0.00 39.32 3.93
1005 1048 4.634012 TTTGAACCTGTAGGCTATGTGT 57.366 40.909 0.00 0.00 39.32 3.72
1020 1063 1.730547 GTGTGCTGCAATGGCGTTC 60.731 57.895 2.77 0.00 45.35 3.95
1233 1276 0.241213 TTCTCACTGAAGGCGTCTCG 59.759 55.000 1.41 0.00 0.00 4.04
1239 1282 1.671845 ACTGAAGGCGTCTCGATACTC 59.328 52.381 1.41 0.00 0.00 2.59
1279 1322 3.056607 ACATTCATGCAAGTAAGGGCAAC 60.057 43.478 0.00 0.00 44.20 4.17
1368 1413 2.869233 TGTTGCTGAAAGTTCCTTGC 57.131 45.000 0.00 0.00 35.30 4.01
1483 1534 6.953101 TCATAGGCTAGTGTTATTGTTTCCA 58.047 36.000 0.00 0.00 0.00 3.53
1552 1606 7.690454 TTTCCACTTGATCATAGGAGGATAA 57.310 36.000 0.00 4.95 0.00 1.75
1642 1704 6.183360 GCAAAGGTATTGCTAAGAAGTCTGAG 60.183 42.308 5.94 0.00 41.87 3.35
2352 2414 2.233271 CATGTTGGGATATCAGGGCAC 58.767 52.381 4.83 0.00 0.00 5.01
2598 2660 1.758936 TGATGAAGGAGCATGGCTTG 58.241 50.000 0.00 0.00 39.88 4.01
2699 2761 5.135383 ACGGTAGCTGTACATATCAGGTAA 58.865 41.667 0.00 0.00 43.94 2.85
2700 2762 5.009410 ACGGTAGCTGTACATATCAGGTAAC 59.991 44.000 0.00 9.27 44.80 2.50
2701 2763 6.401047 GGTAGCTGTACATATCAGGTAACA 57.599 41.667 13.01 0.00 46.36 2.41
2702 2764 6.812998 GGTAGCTGTACATATCAGGTAACAA 58.187 40.000 13.01 0.00 46.36 2.83
2703 2765 6.924060 GGTAGCTGTACATATCAGGTAACAAG 59.076 42.308 13.01 0.00 46.36 3.16
2704 2766 6.791867 AGCTGTACATATCAGGTAACAAGA 57.208 37.500 0.00 0.00 40.99 3.02
2705 2767 6.810911 AGCTGTACATATCAGGTAACAAGAG 58.189 40.000 0.00 0.00 40.99 2.85
2706 2768 6.607600 AGCTGTACATATCAGGTAACAAGAGA 59.392 38.462 0.00 0.00 40.99 3.10
2707 2769 6.697892 GCTGTACATATCAGGTAACAAGAGAC 59.302 42.308 0.00 0.00 41.41 3.36
2708 2770 7.108841 TGTACATATCAGGTAACAAGAGACC 57.891 40.000 0.00 0.00 41.41 3.85
2825 2897 8.106247 TCCATTTTGAAGGTTATCTGTGTTAC 57.894 34.615 0.00 0.00 0.00 2.50
2827 2899 8.237267 CCATTTTGAAGGTTATCTGTGTTACTC 58.763 37.037 0.00 0.00 0.00 2.59
2854 2926 4.409247 ACAGTAGGTGAGAAGGAAAACACT 59.591 41.667 0.00 0.00 34.28 3.55
3172 3250 7.070696 TGTTATAAGCAAGCTATGTAGAGGGAA 59.929 37.037 0.00 0.00 0.00 3.97
3434 3534 1.975680 TCCGCTGAAAAGTACTCCCTT 59.024 47.619 0.00 0.00 0.00 3.95
3437 3537 3.139077 CGCTGAAAAGTACTCCCTTTGT 58.861 45.455 0.00 0.00 34.94 2.83
3438 3538 4.312443 CGCTGAAAAGTACTCCCTTTGTA 58.688 43.478 0.00 0.00 34.94 2.41
3467 3569 9.956720 AAAATGTAAGATGTTTTTGAGTCTCAG 57.043 29.630 2.12 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.930837 TTCAAATGTTTCTCACCAAACCT 57.069 34.783 0.00 0.00 35.69 3.50
1 2 6.976636 TTTTCAAATGTTTCTCACCAAACC 57.023 33.333 0.00 0.00 35.69 3.27
2 3 8.275632 GCTATTTTCAAATGTTTCTCACCAAAC 58.724 33.333 0.00 0.00 36.87 2.93
3 4 7.984050 TGCTATTTTCAAATGTTTCTCACCAAA 59.016 29.630 0.00 0.00 0.00 3.28
4 5 7.437862 GTGCTATTTTCAAATGTTTCTCACCAA 59.562 33.333 0.00 0.00 0.00 3.67
5 6 6.922957 GTGCTATTTTCAAATGTTTCTCACCA 59.077 34.615 0.00 0.00 0.00 4.17
6 7 6.366061 GGTGCTATTTTCAAATGTTTCTCACC 59.634 38.462 0.00 0.00 0.00 4.02
31 32 1.069500 AGAAAAATTCGGGCGTGAACG 60.069 47.619 0.00 0.00 37.28 3.95
60 61 2.019951 GTTTGAACGAGGAGCGCGA 61.020 57.895 12.10 0.00 46.04 5.87
66 67 2.992124 TGGTGAAGTTTGAACGAGGA 57.008 45.000 0.00 0.00 0.00 3.71
95 96 5.072055 AGATGTCCATGTGTGTGATTTTCA 58.928 37.500 0.00 0.00 0.00 2.69
99 100 3.192001 GCAAGATGTCCATGTGTGTGATT 59.808 43.478 0.00 0.00 0.00 2.57
187 188 7.549488 GCTCAACAGTACAGTGGTTAGAAATAT 59.451 37.037 0.00 0.00 0.00 1.28
195 196 1.202770 GGGCTCAACAGTACAGTGGTT 60.203 52.381 0.00 0.00 0.00 3.67
197 198 0.670546 CGGGCTCAACAGTACAGTGG 60.671 60.000 0.00 0.00 0.00 4.00
210 211 4.021925 ACTTCAGTGCCCGGGCTC 62.022 66.667 43.34 39.13 42.51 4.70
216 230 2.213499 CGAATATCCACTTCAGTGCCC 58.787 52.381 1.01 0.00 44.34 5.36
219 233 3.623060 CCCAACGAATATCCACTTCAGTG 59.377 47.826 0.00 0.00 45.23 3.66
222 236 2.238646 AGCCCAACGAATATCCACTTCA 59.761 45.455 0.00 0.00 0.00 3.02
223 237 2.919228 AGCCCAACGAATATCCACTTC 58.081 47.619 0.00 0.00 0.00 3.01
235 249 4.851558 CGAAAATTTAGAGAAAGCCCAACG 59.148 41.667 0.00 0.00 0.00 4.10
236 250 5.048294 TCCGAAAATTTAGAGAAAGCCCAAC 60.048 40.000 0.00 0.00 0.00 3.77
237 251 5.074115 TCCGAAAATTTAGAGAAAGCCCAA 58.926 37.500 0.00 0.00 0.00 4.12
238 252 4.658063 TCCGAAAATTTAGAGAAAGCCCA 58.342 39.130 0.00 0.00 0.00 5.36
239 253 4.700692 ACTCCGAAAATTTAGAGAAAGCCC 59.299 41.667 15.81 0.00 0.00 5.19
240 254 5.881777 ACTCCGAAAATTTAGAGAAAGCC 57.118 39.130 15.81 0.00 0.00 4.35
241 255 6.016111 CGAACTCCGAAAATTTAGAGAAAGC 58.984 40.000 15.81 5.20 41.76 3.51
242 256 7.118422 ACGAACTCCGAAAATTTAGAGAAAG 57.882 36.000 15.81 10.02 41.76 2.62
243 257 7.349711 CAACGAACTCCGAAAATTTAGAGAAA 58.650 34.615 15.81 0.00 41.76 2.52
244 258 6.073440 CCAACGAACTCCGAAAATTTAGAGAA 60.073 38.462 15.81 0.00 41.76 2.87
245 259 5.407387 CCAACGAACTCCGAAAATTTAGAGA 59.593 40.000 15.81 2.85 41.76 3.10
246 260 5.390567 CCCAACGAACTCCGAAAATTTAGAG 60.391 44.000 9.93 9.93 41.76 2.43
247 261 4.453136 CCCAACGAACTCCGAAAATTTAGA 59.547 41.667 0.00 0.00 41.76 2.10
248 262 4.719040 CCCAACGAACTCCGAAAATTTAG 58.281 43.478 0.00 0.00 41.76 1.85
249 263 3.058085 GCCCAACGAACTCCGAAAATTTA 60.058 43.478 0.00 0.00 41.76 1.40
250 264 2.287970 GCCCAACGAACTCCGAAAATTT 60.288 45.455 0.00 0.00 41.76 1.82
251 265 1.268625 GCCCAACGAACTCCGAAAATT 59.731 47.619 0.00 0.00 41.76 1.82
252 266 0.879090 GCCCAACGAACTCCGAAAAT 59.121 50.000 0.00 0.00 41.76 1.82
253 267 0.179040 AGCCCAACGAACTCCGAAAA 60.179 50.000 0.00 0.00 41.76 2.29
254 268 0.179040 AAGCCCAACGAACTCCGAAA 60.179 50.000 0.00 0.00 41.76 3.46
255 269 0.179040 AAAGCCCAACGAACTCCGAA 60.179 50.000 0.00 0.00 41.76 4.30
256 270 0.601841 GAAAGCCCAACGAACTCCGA 60.602 55.000 0.00 0.00 41.76 4.55
317 358 1.000060 TGGTAAGGACGTTTCGGTGAG 60.000 52.381 0.00 0.00 0.00 3.51
365 406 0.249911 ACGAATTAGGGATCGGCAGC 60.250 55.000 0.00 0.00 43.11 5.25
634 675 4.193334 CCGCGGATCTGACGAGCA 62.193 66.667 24.07 0.00 0.00 4.26
721 762 4.292178 GGAGCGGCGGAGGAGATG 62.292 72.222 9.78 0.00 0.00 2.90
803 845 1.687297 GAGGGAAGGGGATGACGGAC 61.687 65.000 0.00 0.00 0.00 4.79
897 939 3.963724 CGAACAACAAACGGAACATGTAC 59.036 43.478 0.00 0.00 0.00 2.90
909 951 4.391830 GCAGGAGATATGACGAACAACAAA 59.608 41.667 0.00 0.00 0.00 2.83
941 983 4.446311 GGAAACAGGCATCCATGGTAGTAT 60.446 45.833 12.58 0.00 35.71 2.12
942 984 3.118038 GGAAACAGGCATCCATGGTAGTA 60.118 47.826 12.58 0.00 35.71 1.82
943 985 2.357154 GGAAACAGGCATCCATGGTAGT 60.357 50.000 12.58 0.00 35.71 2.73
944 986 2.092212 AGGAAACAGGCATCCATGGTAG 60.092 50.000 12.58 6.73 38.23 3.18
957 999 7.038154 TGTTTTTCATAAGGACAGGAAACAG 57.962 36.000 0.00 0.00 32.67 3.16
985 1027 3.868369 GCACACATAGCCTACAGGTTCAA 60.868 47.826 0.00 0.00 37.57 2.69
1000 1043 1.808531 AACGCCATTGCAGCACACAT 61.809 50.000 0.00 0.00 37.32 3.21
1005 1048 1.213275 CATGAACGCCATTGCAGCA 59.787 52.632 0.00 0.00 37.32 4.41
1233 1276 1.960689 GGGACAGCTCTGAGGAGTATC 59.039 57.143 6.83 0.00 41.38 2.24
1239 1282 0.820871 GTACAGGGACAGCTCTGAGG 59.179 60.000 6.83 0.00 45.92 3.86
1368 1413 7.338800 ACCTAAACTGGATAATGATGCAAAG 57.661 36.000 0.00 0.00 32.35 2.77
1443 1494 7.618019 AGCCTATGAACACCAATCTTCTATA 57.382 36.000 0.00 0.00 0.00 1.31
1444 1495 6.506538 AGCCTATGAACACCAATCTTCTAT 57.493 37.500 0.00 0.00 0.00 1.98
1483 1534 8.681486 TCTTGCTTACTTGCATGAATGTATAT 57.319 30.769 6.60 0.00 41.82 0.86
1642 1704 8.956426 TGTCTGTTTAATTATCTGTCCATTTCC 58.044 33.333 0.00 0.00 0.00 3.13
1701 1763 4.177026 GGCAACAACATTACACAACAACA 58.823 39.130 0.00 0.00 0.00 3.33
1936 1998 2.281517 ACGTTTGAAACCGTGACATGA 58.718 42.857 0.00 0.00 35.69 3.07
2352 2414 0.679002 CTCCACACATCCTGGCCTTG 60.679 60.000 3.32 0.00 0.00 3.61
2598 2660 0.954452 CTCTTTGAACAGGTGGTGCC 59.046 55.000 0.00 0.00 37.58 5.01
2699 2761 1.694696 GGGTCTCTTGTGGTCTCTTGT 59.305 52.381 0.00 0.00 0.00 3.16
2700 2762 1.974236 AGGGTCTCTTGTGGTCTCTTG 59.026 52.381 0.00 0.00 0.00 3.02
2701 2763 2.407340 AGGGTCTCTTGTGGTCTCTT 57.593 50.000 0.00 0.00 0.00 2.85
2702 2764 2.407340 AAGGGTCTCTTGTGGTCTCT 57.593 50.000 0.00 0.00 33.76 3.10
2703 2765 3.142174 CAAAAGGGTCTCTTGTGGTCTC 58.858 50.000 0.00 0.00 37.12 3.36
2704 2766 3.214696 CAAAAGGGTCTCTTGTGGTCT 57.785 47.619 0.00 0.00 37.12 3.85
2708 2770 3.254166 CACATCCAAAAGGGTCTCTTGTG 59.746 47.826 0.00 0.00 39.79 3.33
2825 2897 2.757868 CCTTCTCACCTACTGTCCTGAG 59.242 54.545 3.92 3.92 32.86 3.35
2827 2899 2.808919 TCCTTCTCACCTACTGTCCTG 58.191 52.381 0.00 0.00 0.00 3.86
2854 2926 7.517614 TTCAGCTAATTGGTAAACATGAACA 57.482 32.000 0.00 0.00 0.00 3.18
3051 3128 2.425683 CCCCTTGGAAAAAGAACTCCCA 60.426 50.000 0.00 0.00 0.00 4.37
3272 3350 0.897621 CAAAAAGGGGGCCAAGCTAG 59.102 55.000 4.39 0.00 0.00 3.42
3416 3516 3.139077 ACAAAGGGAGTACTTTTCAGCG 58.861 45.455 0.00 0.00 38.56 5.18
3422 3522 8.706322 ACATTTTGATACAAAGGGAGTACTTT 57.294 30.769 0.00 0.00 41.12 2.66
3502 3604 2.037772 CACTCAGTACAAAGCACTCCCT 59.962 50.000 0.00 0.00 0.00 4.20
3503 3605 2.417719 CACTCAGTACAAAGCACTCCC 58.582 52.381 0.00 0.00 0.00 4.30
3592 3695 7.523293 AAACATGTTTCCAGAATGACATACA 57.477 32.000 18.13 0.00 39.69 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.