Multiple sequence alignment - TraesCS2D01G461300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G461300 chr2D 100.000 2240 0 0 1 2240 567641046 567643285 0.000000e+00 4137.0
1 TraesCS2D01G461300 chr2D 81.125 800 64 35 743 1490 567594592 567595356 5.400000e-156 560.0
2 TraesCS2D01G461300 chr2D 79.032 558 68 26 894 1430 567677811 567678340 9.910000e-89 337.0
3 TraesCS2D01G461300 chr2D 91.045 134 12 0 993 1126 567806020 567806153 4.910000e-42 182.0
4 TraesCS2D01G461300 chr2A 96.429 784 26 1 1457 2240 707176780 707177561 0.000000e+00 1291.0
5 TraesCS2D01G461300 chr2A 90.997 622 25 8 866 1463 707168574 707169188 0.000000e+00 809.0
6 TraesCS2D01G461300 chr2A 81.234 762 70 27 743 1449 707077211 707077954 4.210000e-152 547.0
7 TraesCS2D01G461300 chr2A 91.255 263 21 2 467 728 742051742 742051481 7.610000e-95 357.0
8 TraesCS2D01G461300 chr2A 91.255 263 21 2 467 728 742083610 742083349 7.610000e-95 357.0
9 TraesCS2D01G461300 chr2A 79.107 560 74 19 894 1430 707235726 707236265 1.650000e-91 346.0
10 TraesCS2D01G461300 chr2A 90.114 263 24 2 467 728 742115888 742115627 7.660000e-90 340.0
11 TraesCS2D01G461300 chr2A 78.383 532 68 20 894 1395 707222022 707222536 3.620000e-78 302.0
12 TraesCS2D01G461300 chr2A 75.073 686 97 44 788 1453 707064116 707064747 3.690000e-63 252.0
13 TraesCS2D01G461300 chr2A 76.050 238 54 3 1882 2118 595386938 595386703 1.090000e-23 121.0
14 TraesCS2D01G461300 chr2A 81.481 135 10 6 960 1079 706922491 706922625 1.830000e-16 97.1
15 TraesCS2D01G461300 chr2A 89.583 48 5 0 1543 1590 374072100 374072147 6.680000e-06 62.1
16 TraesCS2D01G461300 chr2A 85.000 60 7 2 1997 2056 719734570 719734513 2.400000e-05 60.2
17 TraesCS2D01G461300 chr2B 90.143 842 37 7 727 1546 680408716 680409533 0.000000e+00 1053.0
18 TraesCS2D01G461300 chr2B 93.956 364 21 1 1878 2240 680409628 680409991 1.170000e-152 549.0
19 TraesCS2D01G461300 chr2B 80.267 750 66 35 797 1490 680322333 680323056 7.190000e-135 490.0
20 TraesCS2D01G461300 chr2B 78.585 537 61 28 864 1373 680221227 680221736 2.790000e-79 305.0
21 TraesCS2D01G461300 chr2B 79.412 476 49 19 993 1430 680446078 680446542 7.830000e-75 291.0
22 TraesCS2D01G461300 chr2B 74.474 760 118 42 788 1521 680237369 680238078 2.210000e-65 259.0
23 TraesCS2D01G461300 chr2B 79.429 350 46 16 993 1336 680308726 680309055 8.050000e-55 224.0
24 TraesCS2D01G461300 chr2B 94.828 58 3 0 274 331 141541561 141541504 8.520000e-15 91.6
25 TraesCS2D01G461300 chr2B 96.296 54 2 0 269 322 111667195 111667248 3.060000e-14 89.8
26 TraesCS2D01G461300 chr2B 93.333 45 3 0 1546 1590 477002101 477002145 1.440000e-07 67.6
27 TraesCS2D01G461300 chr7D 97.289 332 6 2 1 332 62282509 62282181 5.400000e-156 560.0
28 TraesCS2D01G461300 chr1D 94.152 342 9 6 1 331 318477181 318476840 5.520000e-141 510.0
29 TraesCS2D01G461300 chr5D 96.444 225 8 0 462 686 538716880 538716656 2.720000e-99 372.0
30 TraesCS2D01G461300 chr5D 96.364 220 8 0 467 686 413283043 413282824 1.640000e-96 363.0
31 TraesCS2D01G461300 chr5D 95.909 220 9 0 467 686 340514238 340514019 7.610000e-95 357.0
32 TraesCS2D01G461300 chr5D 85.981 214 18 7 467 679 296966029 296966231 3.750000e-53 219.0
33 TraesCS2D01G461300 chr5D 83.505 194 30 2 142 334 210775241 210775049 1.770000e-41 180.0
34 TraesCS2D01G461300 chr5D 94.000 50 3 0 1544 1593 285859483 285859434 2.390000e-10 76.8
35 TraesCS2D01G461300 chr3D 90.840 262 20 2 467 728 485206655 485206398 4.580000e-92 348.0
36 TraesCS2D01G461300 chr3D 89.888 267 20 4 463 728 61600621 61600881 9.910000e-89 337.0
37 TraesCS2D01G461300 chr3D 87.019 208 15 3 467 673 388809882 388809686 8.050000e-55 224.0
38 TraesCS2D01G461300 chr3D 83.417 199 31 2 136 333 553331464 553331661 1.370000e-42 183.0
39 TraesCS2D01G461300 chr3D 79.325 237 43 5 1885 2119 427084545 427084313 6.400000e-36 161.0
40 TraesCS2D01G461300 chr4D 89.179 268 23 6 462 728 480816457 480816195 1.660000e-86 329.0
41 TraesCS2D01G461300 chr4D 87.500 48 6 0 1543 1590 292176079 292176126 3.110000e-04 56.5
42 TraesCS2D01G461300 chr5A 92.544 228 16 1 456 682 616634248 616634475 2.150000e-85 326.0
43 TraesCS2D01G461300 chr6D 83.505 194 30 2 136 328 460806927 460807119 1.770000e-41 180.0
44 TraesCS2D01G461300 chr1B 79.545 220 39 5 1887 2104 185077600 185077815 3.850000e-33 152.0
45 TraesCS2D01G461300 chr1B 76.471 187 31 12 1938 2118 594003290 594003111 3.060000e-14 89.8
46 TraesCS2D01G461300 chr7B 78.218 202 39 5 1907 2106 52921600 52921798 8.400000e-25 124.0
47 TraesCS2D01G461300 chr7B 77.835 194 37 5 1929 2119 731855758 731855948 5.060000e-22 115.0
48 TraesCS2D01G461300 chr5B 77.000 200 34 7 143 341 461708567 461708379 1.090000e-18 104.0
49 TraesCS2D01G461300 chr3A 86.486 74 10 0 269 342 21335295 21335222 5.130000e-12 82.4
50 TraesCS2D01G461300 chr3A 91.304 46 4 0 1545 1590 681753517 681753562 1.860000e-06 63.9
51 TraesCS2D01G461300 chr3B 92.157 51 4 0 1543 1593 55365475 55365425 3.090000e-09 73.1
52 TraesCS2D01G461300 chr4B 91.667 48 4 0 1546 1593 371286826 371286779 1.440000e-07 67.6
53 TraesCS2D01G461300 chr6A 90.000 50 5 0 1544 1593 98181482 98181433 5.160000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G461300 chr2D 567641046 567643285 2239 False 4137 4137 100.0000 1 2240 1 chr2D.!!$F2 2239
1 TraesCS2D01G461300 chr2D 567594592 567595356 764 False 560 560 81.1250 743 1490 1 chr2D.!!$F1 747
2 TraesCS2D01G461300 chr2D 567677811 567678340 529 False 337 337 79.0320 894 1430 1 chr2D.!!$F3 536
3 TraesCS2D01G461300 chr2A 707176780 707177561 781 False 1291 1291 96.4290 1457 2240 1 chr2A.!!$F6 783
4 TraesCS2D01G461300 chr2A 707168574 707169188 614 False 809 809 90.9970 866 1463 1 chr2A.!!$F5 597
5 TraesCS2D01G461300 chr2A 707077211 707077954 743 False 547 547 81.2340 743 1449 1 chr2A.!!$F4 706
6 TraesCS2D01G461300 chr2A 707235726 707236265 539 False 346 346 79.1070 894 1430 1 chr2A.!!$F8 536
7 TraesCS2D01G461300 chr2A 707222022 707222536 514 False 302 302 78.3830 894 1395 1 chr2A.!!$F7 501
8 TraesCS2D01G461300 chr2A 707064116 707064747 631 False 252 252 75.0730 788 1453 1 chr2A.!!$F3 665
9 TraesCS2D01G461300 chr2B 680408716 680409991 1275 False 801 1053 92.0495 727 2240 2 chr2B.!!$F8 1513
10 TraesCS2D01G461300 chr2B 680322333 680323056 723 False 490 490 80.2670 797 1490 1 chr2B.!!$F6 693
11 TraesCS2D01G461300 chr2B 680221227 680221736 509 False 305 305 78.5850 864 1373 1 chr2B.!!$F3 509
12 TraesCS2D01G461300 chr2B 680237369 680238078 709 False 259 259 74.4740 788 1521 1 chr2B.!!$F4 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.031994 GACATGCGGGCTGTTTTGTT 59.968 50.0 0.0 0.0 0.00 2.83 F
163 164 0.034767 CATGGAGGCAGAGGCAGAAA 60.035 55.0 0.0 0.0 43.71 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 1319 0.985760 ATGGTGCTGGTACCGGTAAA 59.014 50.0 21.95 9.97 43.87 2.01 R
1342 1529 1.035139 CCATTAAGGAGCATGGGCAC 58.965 55.0 0.00 0.00 44.61 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.654939 GAGCAACGAACTAGCGAGG 58.345 57.895 0.00 0.00 34.83 4.63
19 20 0.802607 GAGCAACGAACTAGCGAGGG 60.803 60.000 0.00 0.00 34.83 4.30
20 21 1.214589 GCAACGAACTAGCGAGGGA 59.785 57.895 0.00 0.00 34.83 4.20
21 22 0.179108 GCAACGAACTAGCGAGGGAT 60.179 55.000 0.00 0.00 34.83 3.85
22 23 1.560923 CAACGAACTAGCGAGGGATG 58.439 55.000 0.00 0.00 34.83 3.51
23 24 1.135083 CAACGAACTAGCGAGGGATGT 60.135 52.381 0.00 0.00 34.83 3.06
24 25 1.183549 ACGAACTAGCGAGGGATGTT 58.816 50.000 0.00 0.00 34.83 2.71
25 26 1.135083 ACGAACTAGCGAGGGATGTTG 60.135 52.381 0.00 0.00 34.83 3.33
26 27 1.291132 GAACTAGCGAGGGATGTTGC 58.709 55.000 0.00 0.00 0.00 4.17
27 28 0.460284 AACTAGCGAGGGATGTTGCG 60.460 55.000 0.00 0.00 31.41 4.85
28 29 1.320344 ACTAGCGAGGGATGTTGCGA 61.320 55.000 0.00 0.00 31.41 5.10
29 30 0.872021 CTAGCGAGGGATGTTGCGAC 60.872 60.000 0.00 0.00 31.41 5.19
30 31 1.600511 TAGCGAGGGATGTTGCGACA 61.601 55.000 9.77 9.77 40.71 4.35
32 33 2.009108 CGAGGGATGTTGCGACATG 58.991 57.895 24.47 5.65 46.27 3.21
42 43 3.737172 GCGACATGCGGGCTGTTT 61.737 61.111 10.70 0.00 41.29 2.83
43 44 2.953821 CGACATGCGGGCTGTTTT 59.046 55.556 0.00 0.00 36.03 2.43
44 45 1.442520 CGACATGCGGGCTGTTTTG 60.443 57.895 0.00 0.00 36.03 2.44
45 46 1.659794 GACATGCGGGCTGTTTTGT 59.340 52.632 0.00 0.00 0.00 2.83
46 47 0.031994 GACATGCGGGCTGTTTTGTT 59.968 50.000 0.00 0.00 0.00 2.83
47 48 0.249405 ACATGCGGGCTGTTTTGTTG 60.249 50.000 0.00 0.00 0.00 3.33
48 49 0.945265 CATGCGGGCTGTTTTGTTGG 60.945 55.000 0.00 0.00 0.00 3.77
49 50 1.112315 ATGCGGGCTGTTTTGTTGGA 61.112 50.000 0.00 0.00 0.00 3.53
50 51 1.323271 TGCGGGCTGTTTTGTTGGAA 61.323 50.000 0.00 0.00 0.00 3.53
51 52 0.874175 GCGGGCTGTTTTGTTGGAAC 60.874 55.000 0.00 0.00 0.00 3.62
52 53 0.249280 CGGGCTGTTTTGTTGGAACC 60.249 55.000 0.00 0.00 0.00 3.62
53 54 0.249280 GGGCTGTTTTGTTGGAACCG 60.249 55.000 0.00 0.00 0.00 4.44
54 55 0.741915 GGCTGTTTTGTTGGAACCGA 59.258 50.000 0.00 0.00 0.00 4.69
55 56 1.535226 GGCTGTTTTGTTGGAACCGAC 60.535 52.381 4.40 4.40 0.00 4.79
56 57 1.133407 GCTGTTTTGTTGGAACCGACA 59.867 47.619 9.59 9.59 38.45 4.35
57 58 2.416162 GCTGTTTTGTTGGAACCGACAA 60.416 45.455 19.14 19.14 45.47 3.18
58 59 3.175929 CTGTTTTGTTGGAACCGACAAC 58.824 45.455 21.80 14.76 46.41 3.32
61 62 3.727146 GTTGGAACCGACAACGCT 58.273 55.556 6.37 0.00 38.83 5.07
62 63 2.019337 GTTGGAACCGACAACGCTT 58.981 52.632 6.37 0.00 38.83 4.68
63 64 0.379316 GTTGGAACCGACAACGCTTT 59.621 50.000 6.37 0.00 38.83 3.51
64 65 1.096416 TTGGAACCGACAACGCTTTT 58.904 45.000 0.00 0.00 38.29 2.27
65 66 1.096416 TGGAACCGACAACGCTTTTT 58.904 45.000 0.00 0.00 38.29 1.94
66 67 1.202200 TGGAACCGACAACGCTTTTTG 60.202 47.619 0.00 0.00 38.29 2.44
67 68 0.843872 GAACCGACAACGCTTTTTGC 59.156 50.000 0.00 0.00 38.29 3.68
68 69 0.454196 AACCGACAACGCTTTTTGCT 59.546 45.000 0.00 0.00 40.11 3.91
69 70 1.301423 ACCGACAACGCTTTTTGCTA 58.699 45.000 0.00 0.00 40.11 3.49
70 71 1.003223 ACCGACAACGCTTTTTGCTAC 60.003 47.619 0.00 0.00 40.11 3.58
71 72 1.003331 CCGACAACGCTTTTTGCTACA 60.003 47.619 0.00 0.00 40.11 2.74
72 73 2.350388 CCGACAACGCTTTTTGCTACAT 60.350 45.455 0.00 0.00 40.11 2.29
73 74 3.120477 CCGACAACGCTTTTTGCTACATA 60.120 43.478 0.00 0.00 40.11 2.29
74 75 4.081761 CGACAACGCTTTTTGCTACATAG 58.918 43.478 0.00 0.00 40.11 2.23
75 76 4.403453 GACAACGCTTTTTGCTACATAGG 58.597 43.478 0.00 0.00 40.11 2.57
76 77 3.190535 ACAACGCTTTTTGCTACATAGGG 59.809 43.478 0.00 0.00 40.11 3.53
77 78 2.365582 ACGCTTTTTGCTACATAGGGG 58.634 47.619 0.00 0.00 40.11 4.79
78 79 1.065551 CGCTTTTTGCTACATAGGGGC 59.934 52.381 0.00 0.00 40.11 5.80
79 80 1.065551 GCTTTTTGCTACATAGGGGCG 59.934 52.381 0.00 0.00 38.95 6.13
80 81 1.676006 CTTTTTGCTACATAGGGGCGG 59.324 52.381 0.00 0.00 0.00 6.13
81 82 0.913205 TTTTGCTACATAGGGGCGGA 59.087 50.000 0.00 0.00 0.00 5.54
82 83 1.136828 TTTGCTACATAGGGGCGGAT 58.863 50.000 0.00 0.00 0.00 4.18
83 84 2.018355 TTGCTACATAGGGGCGGATA 57.982 50.000 0.00 0.00 0.00 2.59
84 85 1.557099 TGCTACATAGGGGCGGATAG 58.443 55.000 0.00 0.00 0.00 2.08
85 86 1.076513 TGCTACATAGGGGCGGATAGA 59.923 52.381 0.00 0.00 0.00 1.98
86 87 1.477295 GCTACATAGGGGCGGATAGAC 59.523 57.143 0.00 0.00 0.00 2.59
87 88 1.743958 CTACATAGGGGCGGATAGACG 59.256 57.143 0.00 0.00 0.00 4.18
109 110 3.422303 GCACGAGCGATGCAACCA 61.422 61.111 0.00 0.00 42.88 3.67
110 111 2.753966 GCACGAGCGATGCAACCAT 61.754 57.895 0.00 0.00 42.88 3.55
111 112 1.061411 CACGAGCGATGCAACCATG 59.939 57.895 0.00 0.00 0.00 3.66
112 113 1.375908 ACGAGCGATGCAACCATGT 60.376 52.632 0.00 0.00 0.00 3.21
113 114 0.108377 ACGAGCGATGCAACCATGTA 60.108 50.000 0.00 0.00 0.00 2.29
114 115 0.578683 CGAGCGATGCAACCATGTAG 59.421 55.000 0.00 0.00 0.00 2.74
115 116 0.305922 GAGCGATGCAACCATGTAGC 59.694 55.000 0.00 0.00 0.00 3.58
116 117 1.097547 AGCGATGCAACCATGTAGCC 61.098 55.000 0.00 0.00 0.00 3.93
117 118 1.375853 GCGATGCAACCATGTAGCCA 61.376 55.000 0.00 0.00 0.00 4.75
118 119 0.659427 CGATGCAACCATGTAGCCAG 59.341 55.000 0.00 0.00 0.00 4.85
119 120 0.383231 GATGCAACCATGTAGCCAGC 59.617 55.000 0.00 0.00 0.00 4.85
120 121 1.378882 ATGCAACCATGTAGCCAGCG 61.379 55.000 0.00 0.00 0.00 5.18
121 122 1.745115 GCAACCATGTAGCCAGCGA 60.745 57.895 0.00 0.00 0.00 4.93
122 123 1.709147 GCAACCATGTAGCCAGCGAG 61.709 60.000 0.00 0.00 0.00 5.03
123 124 1.450312 AACCATGTAGCCAGCGAGC 60.450 57.895 0.00 0.00 0.00 5.03
125 126 1.886313 CCATGTAGCCAGCGAGCTG 60.886 63.158 17.44 17.44 44.67 4.24
126 127 2.202987 ATGTAGCCAGCGAGCTGC 60.203 61.111 18.81 13.94 44.67 5.25
146 147 4.498520 CGGTGAGAGCGACGCCAT 62.499 66.667 17.79 4.93 42.41 4.40
147 148 2.887568 GGTGAGAGCGACGCCATG 60.888 66.667 17.79 0.00 37.78 3.66
148 149 2.887568 GTGAGAGCGACGCCATGG 60.888 66.667 17.79 7.63 0.00 3.66
149 150 3.068064 TGAGAGCGACGCCATGGA 61.068 61.111 18.40 0.00 0.00 3.41
150 151 2.279120 GAGAGCGACGCCATGGAG 60.279 66.667 18.40 16.40 0.00 3.86
151 152 3.781770 GAGAGCGACGCCATGGAGG 62.782 68.421 18.40 8.99 41.84 4.30
160 161 2.192443 CCATGGAGGCAGAGGCAG 59.808 66.667 5.56 0.00 43.71 4.85
161 162 2.372890 CCATGGAGGCAGAGGCAGA 61.373 63.158 5.56 0.00 43.71 4.26
162 163 1.605992 CATGGAGGCAGAGGCAGAA 59.394 57.895 0.00 0.00 43.71 3.02
163 164 0.034767 CATGGAGGCAGAGGCAGAAA 60.035 55.000 0.00 0.00 43.71 2.52
164 165 0.255318 ATGGAGGCAGAGGCAGAAAG 59.745 55.000 0.00 0.00 43.71 2.62
165 166 1.748500 GGAGGCAGAGGCAGAAAGC 60.749 63.158 0.00 0.00 43.71 3.51
175 176 4.715523 CAGAAAGCCGCGGGGGAA 62.716 66.667 29.38 0.00 38.47 3.97
176 177 4.717313 AGAAAGCCGCGGGGGAAC 62.717 66.667 29.38 9.78 38.47 3.62
182 183 4.460683 CCGCGGGGGAACGATGAA 62.461 66.667 20.10 0.00 38.47 2.57
183 184 3.192922 CGCGGGGGAACGATGAAC 61.193 66.667 0.00 0.00 35.47 3.18
184 185 2.046700 GCGGGGGAACGATGAACA 60.047 61.111 0.00 0.00 35.47 3.18
185 186 1.673009 GCGGGGGAACGATGAACAA 60.673 57.895 0.00 0.00 35.47 2.83
186 187 1.644786 GCGGGGGAACGATGAACAAG 61.645 60.000 0.00 0.00 35.47 3.16
187 188 1.644786 CGGGGGAACGATGAACAAGC 61.645 60.000 0.00 0.00 35.47 4.01
188 189 0.608035 GGGGGAACGATGAACAAGCA 60.608 55.000 0.00 0.00 0.00 3.91
189 190 0.804989 GGGGAACGATGAACAAGCAG 59.195 55.000 0.00 0.00 0.00 4.24
190 191 0.804989 GGGAACGATGAACAAGCAGG 59.195 55.000 0.00 0.00 0.00 4.85
191 192 0.804989 GGAACGATGAACAAGCAGGG 59.195 55.000 0.00 0.00 0.00 4.45
192 193 0.804989 GAACGATGAACAAGCAGGGG 59.195 55.000 0.00 0.00 0.00 4.79
193 194 0.609131 AACGATGAACAAGCAGGGGG 60.609 55.000 0.00 0.00 0.00 5.40
194 195 1.299648 CGATGAACAAGCAGGGGGA 59.700 57.895 0.00 0.00 0.00 4.81
195 196 0.107017 CGATGAACAAGCAGGGGGAT 60.107 55.000 0.00 0.00 0.00 3.85
196 197 1.683011 CGATGAACAAGCAGGGGGATT 60.683 52.381 0.00 0.00 0.00 3.01
197 198 2.460669 GATGAACAAGCAGGGGGATTT 58.539 47.619 0.00 0.00 0.00 2.17
198 199 1.631405 TGAACAAGCAGGGGGATTTG 58.369 50.000 0.00 0.00 0.00 2.32
199 200 0.247460 GAACAAGCAGGGGGATTTGC 59.753 55.000 0.00 0.00 40.57 3.68
200 201 1.535204 AACAAGCAGGGGGATTTGCG 61.535 55.000 0.00 0.00 44.80 4.85
201 202 1.978617 CAAGCAGGGGGATTTGCGT 60.979 57.895 0.00 0.00 44.80 5.24
202 203 1.978617 AAGCAGGGGGATTTGCGTG 60.979 57.895 0.00 0.00 44.80 5.34
203 204 2.361104 GCAGGGGGATTTGCGTGA 60.361 61.111 0.00 0.00 0.00 4.35
204 205 2.700773 GCAGGGGGATTTGCGTGAC 61.701 63.158 0.00 0.00 0.00 3.67
205 206 2.046285 CAGGGGGATTTGCGTGACC 61.046 63.158 0.00 0.00 0.00 4.02
206 207 3.131478 GGGGGATTTGCGTGACCG 61.131 66.667 0.00 0.00 37.07 4.79
207 208 3.131478 GGGGATTTGCGTGACCGG 61.131 66.667 0.00 0.00 33.68 5.28
208 209 3.810896 GGGATTTGCGTGACCGGC 61.811 66.667 0.00 0.00 33.68 6.13
209 210 4.160635 GGATTTGCGTGACCGGCG 62.161 66.667 0.00 0.00 33.68 6.46
210 211 3.419759 GATTTGCGTGACCGGCGT 61.420 61.111 6.01 0.00 33.68 5.68
211 212 3.362851 GATTTGCGTGACCGGCGTC 62.363 63.158 6.01 4.26 39.66 5.19
227 228 2.959372 TCGCTCGCGAGAAGGAAA 59.041 55.556 38.74 13.24 44.01 3.13
228 229 1.154016 TCGCTCGCGAGAAGGAAAG 60.154 57.895 38.74 18.48 44.01 2.62
229 230 2.161486 CGCTCGCGAGAAGGAAAGG 61.161 63.158 38.74 11.21 42.83 3.11
230 231 1.811679 GCTCGCGAGAAGGAAAGGG 60.812 63.158 38.74 10.41 41.32 3.95
231 232 1.890894 CTCGCGAGAAGGAAAGGGA 59.109 57.895 32.06 0.00 41.32 4.20
232 233 0.458716 CTCGCGAGAAGGAAAGGGAC 60.459 60.000 32.06 0.00 41.32 4.46
233 234 1.805945 CGCGAGAAGGAAAGGGACG 60.806 63.158 0.00 0.00 0.00 4.79
234 235 1.292541 GCGAGAAGGAAAGGGACGT 59.707 57.895 0.00 0.00 0.00 4.34
235 236 1.014564 GCGAGAAGGAAAGGGACGTG 61.015 60.000 0.00 0.00 0.00 4.49
236 237 0.317479 CGAGAAGGAAAGGGACGTGT 59.683 55.000 0.00 0.00 0.00 4.49
237 238 1.797025 GAGAAGGAAAGGGACGTGTG 58.203 55.000 0.00 0.00 0.00 3.82
238 239 0.250338 AGAAGGAAAGGGACGTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
239 240 1.566018 GAAGGAAAGGGACGTGTGCG 61.566 60.000 0.00 0.00 44.93 5.34
240 241 2.029964 GGAAAGGGACGTGTGCGA 59.970 61.111 0.00 0.00 42.00 5.10
241 242 2.027625 GGAAAGGGACGTGTGCGAG 61.028 63.158 0.00 0.00 42.00 5.03
242 243 2.027625 GAAAGGGACGTGTGCGAGG 61.028 63.158 0.00 0.00 42.00 4.63
243 244 4.681978 AAGGGACGTGTGCGAGGC 62.682 66.667 0.00 0.00 42.00 4.70
245 246 4.980805 GGGACGTGTGCGAGGCAA 62.981 66.667 0.00 0.00 41.47 4.52
246 247 2.742372 GGACGTGTGCGAGGCAAT 60.742 61.111 0.00 0.00 41.47 3.56
247 248 2.740714 GGACGTGTGCGAGGCAATC 61.741 63.158 0.00 0.00 41.47 2.67
248 249 2.740714 GACGTGTGCGAGGCAATCC 61.741 63.158 0.00 0.00 41.47 3.01
250 251 1.153647 CGTGTGCGAGGCAATCCTA 60.154 57.895 0.00 0.00 44.46 2.94
251 252 0.530650 CGTGTGCGAGGCAATCCTAT 60.531 55.000 0.00 0.00 44.46 2.57
252 253 0.940126 GTGTGCGAGGCAATCCTATG 59.060 55.000 0.00 0.00 44.46 2.23
253 254 0.179048 TGTGCGAGGCAATCCTATGG 60.179 55.000 0.00 0.00 44.46 2.74
254 255 0.179045 GTGCGAGGCAATCCTATGGT 60.179 55.000 0.00 0.00 44.46 3.55
255 256 0.106708 TGCGAGGCAATCCTATGGTC 59.893 55.000 0.00 0.00 44.46 4.02
256 257 0.603975 GCGAGGCAATCCTATGGTCC 60.604 60.000 0.00 0.00 44.46 4.46
257 258 0.758734 CGAGGCAATCCTATGGTCCA 59.241 55.000 0.00 0.00 44.46 4.02
258 259 1.270518 CGAGGCAATCCTATGGTCCAG 60.271 57.143 0.00 0.00 44.46 3.86
259 260 1.072965 GAGGCAATCCTATGGTCCAGG 59.927 57.143 0.00 0.00 44.46 4.45
260 261 0.111253 GGCAATCCTATGGTCCAGGG 59.889 60.000 0.00 2.40 33.66 4.45
261 262 0.538287 GCAATCCTATGGTCCAGGGC 60.538 60.000 0.00 0.00 33.66 5.19
262 263 0.250467 CAATCCTATGGTCCAGGGCG 60.250 60.000 0.00 0.00 33.66 6.13
263 264 2.056906 AATCCTATGGTCCAGGGCGC 62.057 60.000 0.00 0.00 33.66 6.53
264 265 3.479203 CCTATGGTCCAGGGCGCA 61.479 66.667 10.83 0.00 0.00 6.09
265 266 2.203070 CTATGGTCCAGGGCGCAC 60.203 66.667 10.83 5.15 0.00 5.34
266 267 4.155733 TATGGTCCAGGGCGCACG 62.156 66.667 10.83 1.33 0.00 5.34
269 270 4.157120 GGTCCAGGGCGCACGTAT 62.157 66.667 10.83 0.00 0.00 3.06
270 271 2.585247 GTCCAGGGCGCACGTATC 60.585 66.667 10.83 0.00 0.00 2.24
271 272 3.071837 TCCAGGGCGCACGTATCA 61.072 61.111 10.83 0.00 0.00 2.15
272 273 2.586079 CCAGGGCGCACGTATCAG 60.586 66.667 10.83 0.00 0.00 2.90
273 274 2.586079 CAGGGCGCACGTATCAGG 60.586 66.667 10.83 0.00 0.00 3.86
274 275 4.530857 AGGGCGCACGTATCAGGC 62.531 66.667 10.83 0.00 0.00 4.85
278 279 4.873129 CGCACGTATCAGGCGGCT 62.873 66.667 5.25 5.25 46.46 5.52
279 280 3.264897 GCACGTATCAGGCGGCTG 61.265 66.667 31.58 31.58 0.00 4.85
280 281 3.264897 CACGTATCAGGCGGCTGC 61.265 66.667 32.43 18.35 41.71 5.25
281 282 4.873129 ACGTATCAGGCGGCTGCG 62.873 66.667 32.43 29.46 44.10 5.18
299 300 2.675075 CGGTGACCGGCCCAAATT 60.675 61.111 17.80 0.00 44.15 1.82
300 301 2.272447 CGGTGACCGGCCCAAATTT 61.272 57.895 17.80 0.00 44.15 1.82
301 302 1.291906 GGTGACCGGCCCAAATTTG 59.708 57.895 11.40 11.40 0.00 2.32
310 311 2.571231 CCAAATTTGGGCCGGTCG 59.429 61.111 26.87 1.10 44.70 4.79
311 312 1.974343 CCAAATTTGGGCCGGTCGA 60.974 57.895 26.87 0.00 44.70 4.20
312 313 1.211709 CAAATTTGGGCCGGTCGAC 59.788 57.895 7.13 7.13 0.00 4.20
313 314 1.974875 AAATTTGGGCCGGTCGACC 60.975 57.895 25.28 25.28 0.00 4.79
324 325 3.204827 GTCGACCGGCGCCTAGTA 61.205 66.667 26.68 4.80 40.61 1.82
325 326 3.204827 TCGACCGGCGCCTAGTAC 61.205 66.667 26.68 13.80 40.61 2.73
326 327 3.207669 CGACCGGCGCCTAGTACT 61.208 66.667 26.68 0.00 0.00 2.73
327 328 2.412112 GACCGGCGCCTAGTACTG 59.588 66.667 26.68 6.56 0.00 2.74
328 329 3.769875 GACCGGCGCCTAGTACTGC 62.770 68.421 26.68 6.03 0.00 4.40
329 330 4.587189 CCGGCGCCTAGTACTGCC 62.587 72.222 26.68 8.80 44.09 4.85
330 331 4.587189 CGGCGCCTAGTACTGCCC 62.587 72.222 26.68 8.77 44.71 5.36
331 332 3.155167 GGCGCCTAGTACTGCCCT 61.155 66.667 22.15 0.00 41.70 5.19
332 333 2.732619 GGCGCCTAGTACTGCCCTT 61.733 63.158 22.15 0.00 41.70 3.95
333 334 1.221021 GCGCCTAGTACTGCCCTTT 59.779 57.895 5.39 0.00 0.00 3.11
334 335 0.392595 GCGCCTAGTACTGCCCTTTT 60.393 55.000 5.39 0.00 0.00 2.27
335 336 1.134610 GCGCCTAGTACTGCCCTTTTA 60.135 52.381 5.39 0.00 0.00 1.52
336 337 2.678769 GCGCCTAGTACTGCCCTTTTAA 60.679 50.000 5.39 0.00 0.00 1.52
337 338 3.195661 CGCCTAGTACTGCCCTTTTAAG 58.804 50.000 5.39 0.00 0.00 1.85
338 339 3.118884 CGCCTAGTACTGCCCTTTTAAGA 60.119 47.826 5.39 0.00 0.00 2.10
339 340 4.622220 CGCCTAGTACTGCCCTTTTAAGAA 60.622 45.833 5.39 0.00 0.00 2.52
340 341 4.876679 GCCTAGTACTGCCCTTTTAAGAAG 59.123 45.833 5.39 0.00 0.00 2.85
341 342 5.429130 CCTAGTACTGCCCTTTTAAGAAGG 58.571 45.833 5.39 8.60 37.17 3.46
342 343 3.687125 AGTACTGCCCTTTTAAGAAGGC 58.313 45.455 0.00 0.00 45.96 4.35
343 344 2.980246 ACTGCCCTTTTAAGAAGGCT 57.020 45.000 7.13 0.00 45.94 4.58
344 345 3.244887 ACTGCCCTTTTAAGAAGGCTT 57.755 42.857 0.00 0.00 45.94 4.35
345 346 3.576861 ACTGCCCTTTTAAGAAGGCTTT 58.423 40.909 0.00 0.00 45.94 3.51
346 347 4.736473 ACTGCCCTTTTAAGAAGGCTTTA 58.264 39.130 0.00 0.00 45.94 1.85
347 348 5.144832 ACTGCCCTTTTAAGAAGGCTTTAA 58.855 37.500 0.00 0.00 45.94 1.52
348 349 5.243954 ACTGCCCTTTTAAGAAGGCTTTAAG 59.756 40.000 0.00 1.18 45.94 1.85
349 350 5.144832 TGCCCTTTTAAGAAGGCTTTAAGT 58.855 37.500 0.00 0.00 45.94 2.24
350 351 5.010617 TGCCCTTTTAAGAAGGCTTTAAGTG 59.989 40.000 0.00 0.00 45.94 3.16
351 352 5.566826 GCCCTTTTAAGAAGGCTTTAAGTGG 60.567 44.000 0.00 3.66 42.34 4.00
352 353 5.773176 CCCTTTTAAGAAGGCTTTAAGTGGA 59.227 40.000 0.00 0.00 36.10 4.02
353 354 6.266786 CCCTTTTAAGAAGGCTTTAAGTGGAA 59.733 38.462 0.00 0.00 36.10 3.53
354 355 7.039011 CCCTTTTAAGAAGGCTTTAAGTGGAAT 60.039 37.037 0.00 0.00 36.10 3.01
355 356 7.814587 CCTTTTAAGAAGGCTTTAAGTGGAATG 59.185 37.037 0.00 0.00 35.56 2.67
356 357 6.834168 TTAAGAAGGCTTTAAGTGGAATGG 57.166 37.500 0.00 0.00 35.56 3.16
357 358 3.092301 AGAAGGCTTTAAGTGGAATGGC 58.908 45.455 0.00 0.00 0.00 4.40
358 359 2.603075 AGGCTTTAAGTGGAATGGCA 57.397 45.000 0.00 0.00 33.12 4.92
359 360 3.105959 AGGCTTTAAGTGGAATGGCAT 57.894 42.857 0.00 0.00 33.12 4.40
360 361 3.444029 AGGCTTTAAGTGGAATGGCATT 58.556 40.909 13.54 13.54 33.12 3.56
361 362 4.609301 AGGCTTTAAGTGGAATGGCATTA 58.391 39.130 13.65 0.00 33.12 1.90
362 363 4.646492 AGGCTTTAAGTGGAATGGCATTAG 59.354 41.667 13.65 5.38 33.12 1.73
363 364 4.402474 GGCTTTAAGTGGAATGGCATTAGT 59.598 41.667 13.65 0.00 0.00 2.24
364 365 5.592688 GGCTTTAAGTGGAATGGCATTAGTA 59.407 40.000 13.65 0.00 0.00 1.82
365 366 6.265422 GGCTTTAAGTGGAATGGCATTAGTAT 59.735 38.462 13.65 1.75 0.00 2.12
366 367 7.447238 GGCTTTAAGTGGAATGGCATTAGTATA 59.553 37.037 13.65 0.79 0.00 1.47
367 368 9.014297 GCTTTAAGTGGAATGGCATTAGTATAT 57.986 33.333 13.65 1.23 0.00 0.86
370 371 9.667107 TTAAGTGGAATGGCATTAGTATATAGC 57.333 33.333 13.65 0.00 0.00 2.97
371 372 6.653989 AGTGGAATGGCATTAGTATATAGCC 58.346 40.000 13.65 7.25 45.41 3.93
377 378 4.192317 GGCATTAGTATATAGCCAGCACC 58.808 47.826 5.33 0.00 44.59 5.01
378 379 4.192317 GCATTAGTATATAGCCAGCACCC 58.808 47.826 0.00 0.00 0.00 4.61
379 380 4.770795 CATTAGTATATAGCCAGCACCCC 58.229 47.826 0.00 0.00 0.00 4.95
380 381 1.267121 AGTATATAGCCAGCACCCCG 58.733 55.000 0.00 0.00 0.00 5.73
381 382 0.249398 GTATATAGCCAGCACCCCGG 59.751 60.000 0.00 0.00 0.00 5.73
387 388 3.797353 CCAGCACCCCGGCTATGT 61.797 66.667 0.00 0.00 43.68 2.29
388 389 2.439960 CCAGCACCCCGGCTATGTA 61.440 63.158 0.00 0.00 43.68 2.29
389 390 1.754745 CAGCACCCCGGCTATGTAT 59.245 57.895 0.00 0.00 43.68 2.29
390 391 0.108585 CAGCACCCCGGCTATGTATT 59.891 55.000 0.00 0.00 43.68 1.89
391 392 1.346395 CAGCACCCCGGCTATGTATTA 59.654 52.381 0.00 0.00 43.68 0.98
392 393 1.623811 AGCACCCCGGCTATGTATTAG 59.376 52.381 0.00 0.00 43.70 1.73
405 406 7.856145 GCTATGTATTAGCCATGCTCTAATT 57.144 36.000 17.79 8.02 46.47 1.40
406 407 7.914465 GCTATGTATTAGCCATGCTCTAATTC 58.086 38.462 17.79 14.66 46.47 2.17
407 408 6.974932 ATGTATTAGCCATGCTCTAATTCG 57.025 37.500 17.79 0.00 40.44 3.34
408 409 6.096673 TGTATTAGCCATGCTCTAATTCGA 57.903 37.500 17.79 0.00 40.44 3.71
409 410 5.926542 TGTATTAGCCATGCTCTAATTCGAC 59.073 40.000 17.79 12.90 40.44 4.20
410 411 2.988010 AGCCATGCTCTAATTCGACA 57.012 45.000 0.00 0.00 30.62 4.35
411 412 2.831333 AGCCATGCTCTAATTCGACAG 58.169 47.619 0.00 0.00 30.62 3.51
412 413 1.262683 GCCATGCTCTAATTCGACAGC 59.737 52.381 0.00 0.00 0.00 4.40
413 414 1.524355 CCATGCTCTAATTCGACAGCG 59.476 52.381 0.00 0.00 34.39 5.18
414 415 1.524355 CATGCTCTAATTCGACAGCGG 59.476 52.381 0.00 0.00 38.28 5.52
415 416 0.806102 TGCTCTAATTCGACAGCGGC 60.806 55.000 0.00 0.00 38.28 6.53
416 417 0.806102 GCTCTAATTCGACAGCGGCA 60.806 55.000 1.45 0.00 38.28 5.69
417 418 0.924090 CTCTAATTCGACAGCGGCAC 59.076 55.000 1.45 0.00 38.28 5.01
418 419 0.459585 TCTAATTCGACAGCGGCACC 60.460 55.000 1.45 0.00 38.28 5.01
419 420 0.460284 CTAATTCGACAGCGGCACCT 60.460 55.000 1.45 0.00 38.28 4.00
420 421 0.036765 TAATTCGACAGCGGCACCTT 60.037 50.000 1.45 0.00 38.28 3.50
421 422 1.577328 AATTCGACAGCGGCACCTTG 61.577 55.000 1.45 0.00 38.28 3.61
431 432 3.567473 GCACCTTGCCTTCTCGAC 58.433 61.111 0.00 0.00 37.42 4.20
432 433 2.383527 GCACCTTGCCTTCTCGACG 61.384 63.158 0.00 0.00 37.42 5.12
433 434 1.738099 CACCTTGCCTTCTCGACGG 60.738 63.158 0.00 0.00 0.00 4.79
434 435 2.815647 CCTTGCCTTCTCGACGGC 60.816 66.667 7.42 7.42 46.46 5.68
438 439 2.719979 GCCTTCTCGACGGCGATA 59.280 61.111 16.81 3.25 46.80 2.92
439 440 1.370657 GCCTTCTCGACGGCGATAG 60.371 63.158 16.81 15.15 46.80 2.08
440 441 1.283181 CCTTCTCGACGGCGATAGG 59.717 63.158 22.74 22.74 46.80 2.57
441 442 1.164662 CCTTCTCGACGGCGATAGGA 61.165 60.000 28.75 15.61 46.80 2.94
442 443 0.041135 CTTCTCGACGGCGATAGGAC 60.041 60.000 16.81 0.00 46.80 3.85
443 444 1.442526 TTCTCGACGGCGATAGGACC 61.443 60.000 16.81 0.00 46.80 4.46
444 445 2.903855 TCGACGGCGATAGGACCC 60.904 66.667 10.67 0.00 42.51 4.46
445 446 4.323843 CGACGGCGATAGGACCCG 62.324 72.222 16.62 0.00 46.97 5.28
448 449 4.323843 CGGCGATAGGACCCGTCG 62.324 72.222 0.00 10.83 46.93 5.12
449 450 3.974757 GGCGATAGGACCCGTCGG 61.975 72.222 15.46 3.60 36.00 4.79
450 451 4.642542 GCGATAGGACCCGTCGGC 62.643 72.222 5.50 0.00 36.00 5.54
451 452 3.214123 CGATAGGACCCGTCGGCA 61.214 66.667 5.50 0.00 0.00 5.69
452 453 2.416260 GATAGGACCCGTCGGCAC 59.584 66.667 5.50 1.33 0.00 5.01
473 474 1.819903 GGATATCCGCCTCAGACTACC 59.180 57.143 5.86 0.00 0.00 3.18
474 475 1.819903 GATATCCGCCTCAGACTACCC 59.180 57.143 0.00 0.00 0.00 3.69
475 476 0.554305 TATCCGCCTCAGACTACCCA 59.446 55.000 0.00 0.00 0.00 4.51
476 477 1.043673 ATCCGCCTCAGACTACCCAC 61.044 60.000 0.00 0.00 0.00 4.61
477 478 1.982395 CCGCCTCAGACTACCCACA 60.982 63.158 0.00 0.00 0.00 4.17
478 479 1.513158 CGCCTCAGACTACCCACAG 59.487 63.158 0.00 0.00 0.00 3.66
479 480 1.251527 CGCCTCAGACTACCCACAGT 61.252 60.000 0.00 0.00 0.00 3.55
480 481 0.247736 GCCTCAGACTACCCACAGTG 59.752 60.000 0.00 0.00 0.00 3.66
481 482 0.898320 CCTCAGACTACCCACAGTGG 59.102 60.000 13.35 13.35 37.25 4.00
493 494 3.543680 CCACAGTGGGAGTAACATAGG 57.456 52.381 12.40 0.00 32.67 2.57
494 495 2.838202 CCACAGTGGGAGTAACATAGGT 59.162 50.000 12.40 0.00 32.67 3.08
495 496 4.028131 CCACAGTGGGAGTAACATAGGTA 58.972 47.826 12.40 0.00 32.67 3.08
496 497 4.099573 CCACAGTGGGAGTAACATAGGTAG 59.900 50.000 12.40 0.00 32.67 3.18
497 498 4.710375 CACAGTGGGAGTAACATAGGTAGT 59.290 45.833 0.00 0.00 0.00 2.73
498 499 5.889853 CACAGTGGGAGTAACATAGGTAGTA 59.110 44.000 0.00 0.00 0.00 1.82
499 500 6.379133 CACAGTGGGAGTAACATAGGTAGTAA 59.621 42.308 0.00 0.00 0.00 2.24
500 501 6.379417 ACAGTGGGAGTAACATAGGTAGTAAC 59.621 42.308 0.00 0.00 0.00 2.50
501 502 6.379133 CAGTGGGAGTAACATAGGTAGTAACA 59.621 42.308 0.00 0.00 0.00 2.41
502 503 7.069578 CAGTGGGAGTAACATAGGTAGTAACAT 59.930 40.741 0.00 0.00 0.00 2.71
503 504 7.287235 AGTGGGAGTAACATAGGTAGTAACATC 59.713 40.741 0.00 0.00 0.00 3.06
504 505 7.069085 GTGGGAGTAACATAGGTAGTAACATCA 59.931 40.741 0.00 0.00 0.00 3.07
505 506 7.069085 TGGGAGTAACATAGGTAGTAACATCAC 59.931 40.741 0.00 0.00 0.00 3.06
506 507 7.069085 GGGAGTAACATAGGTAGTAACATCACA 59.931 40.741 0.00 0.00 0.00 3.58
507 508 7.919621 GGAGTAACATAGGTAGTAACATCACAC 59.080 40.741 0.00 0.00 0.00 3.82
508 509 8.357290 AGTAACATAGGTAGTAACATCACACA 57.643 34.615 0.00 0.00 0.00 3.72
509 510 8.978472 AGTAACATAGGTAGTAACATCACACAT 58.022 33.333 0.00 0.00 0.00 3.21
512 513 9.982651 AACATAGGTAGTAACATCACACATATC 57.017 33.333 0.00 0.00 0.00 1.63
513 514 9.368416 ACATAGGTAGTAACATCACACATATCT 57.632 33.333 0.00 0.00 0.00 1.98
516 517 8.410673 AGGTAGTAACATCACACATATCTAGG 57.589 38.462 0.00 0.00 0.00 3.02
517 518 8.005388 AGGTAGTAACATCACACATATCTAGGT 58.995 37.037 0.00 0.00 0.00 3.08
518 519 8.639761 GGTAGTAACATCACACATATCTAGGTT 58.360 37.037 0.00 0.00 0.00 3.50
537 538 9.987272 TCTAGGTTAAATAGATGATGTGACATG 57.013 33.333 1.23 0.00 0.00 3.21
538 539 9.770097 CTAGGTTAAATAGATGATGTGACATGT 57.230 33.333 1.23 0.00 0.00 3.21
565 566 8.970859 ATAAATGAAGAAAGAGATGGTAGTGG 57.029 34.615 0.00 0.00 0.00 4.00
566 567 6.380079 AATGAAGAAAGAGATGGTAGTGGT 57.620 37.500 0.00 0.00 0.00 4.16
567 568 7.496346 AATGAAGAAAGAGATGGTAGTGGTA 57.504 36.000 0.00 0.00 0.00 3.25
568 569 6.928348 TGAAGAAAGAGATGGTAGTGGTAA 57.072 37.500 0.00 0.00 0.00 2.85
569 570 6.698380 TGAAGAAAGAGATGGTAGTGGTAAC 58.302 40.000 0.00 0.00 0.00 2.50
605 606 8.803397 ACTACTAGTATGAGTAACATCACACA 57.197 34.615 2.33 0.00 40.07 3.72
606 607 9.409918 ACTACTAGTATGAGTAACATCACACAT 57.590 33.333 2.33 0.00 40.07 3.21
612 613 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
613 614 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
614 615 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
615 616 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
616 617 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
617 618 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
618 619 4.592942 ACATCACACATATCAAGGCAAGT 58.407 39.130 0.00 0.00 0.00 3.16
619 620 5.012239 ACATCACACATATCAAGGCAAGTT 58.988 37.500 0.00 0.00 0.00 2.66
620 621 5.106038 ACATCACACATATCAAGGCAAGTTG 60.106 40.000 0.00 0.00 0.00 3.16
621 622 4.397420 TCACACATATCAAGGCAAGTTGT 58.603 39.130 4.48 0.00 0.00 3.32
622 623 4.216042 TCACACATATCAAGGCAAGTTGTG 59.784 41.667 4.48 0.00 39.03 3.33
623 624 4.022935 CACACATATCAAGGCAAGTTGTGT 60.023 41.667 4.48 0.00 44.95 3.72
624 625 4.216257 ACACATATCAAGGCAAGTTGTGTC 59.784 41.667 4.48 0.00 41.53 3.67
626 627 5.643348 CACATATCAAGGCAAGTTGTGTCTA 59.357 40.000 4.48 0.00 43.11 2.59
627 628 6.317140 CACATATCAAGGCAAGTTGTGTCTAT 59.683 38.462 4.48 0.00 43.11 1.98
628 629 7.495606 CACATATCAAGGCAAGTTGTGTCTATA 59.504 37.037 4.48 0.00 43.11 1.31
629 630 7.712639 ACATATCAAGGCAAGTTGTGTCTATAG 59.287 37.037 4.48 0.00 43.11 1.31
630 631 5.483685 TCAAGGCAAGTTGTGTCTATAGT 57.516 39.130 4.48 0.00 43.11 2.12
631 632 5.479306 TCAAGGCAAGTTGTGTCTATAGTC 58.521 41.667 4.48 0.00 43.11 2.59
632 633 5.246203 TCAAGGCAAGTTGTGTCTATAGTCT 59.754 40.000 4.48 0.00 43.11 3.24
633 634 6.436218 TCAAGGCAAGTTGTGTCTATAGTCTA 59.564 38.462 4.48 0.00 43.11 2.59
634 635 6.852420 AGGCAAGTTGTGTCTATAGTCTAA 57.148 37.500 4.48 0.00 41.69 2.10
635 636 7.425224 AGGCAAGTTGTGTCTATAGTCTAAT 57.575 36.000 4.48 0.00 41.69 1.73
636 637 8.534954 AGGCAAGTTGTGTCTATAGTCTAATA 57.465 34.615 4.48 0.00 41.69 0.98
637 638 8.978472 AGGCAAGTTGTGTCTATAGTCTAATAA 58.022 33.333 4.48 0.00 41.69 1.40
638 639 9.595823 GGCAAGTTGTGTCTATAGTCTAATAAA 57.404 33.333 4.48 0.00 0.00 1.40
652 653 7.798596 AGTCTAATAAATGAAGTGCTCCATG 57.201 36.000 0.00 0.00 0.00 3.66
653 654 7.341805 AGTCTAATAAATGAAGTGCTCCATGT 58.658 34.615 0.00 0.00 0.00 3.21
654 655 7.831193 AGTCTAATAAATGAAGTGCTCCATGTT 59.169 33.333 0.00 0.00 0.00 2.71
655 656 9.109393 GTCTAATAAATGAAGTGCTCCATGTTA 57.891 33.333 0.00 0.00 0.00 2.41
656 657 9.109393 TCTAATAAATGAAGTGCTCCATGTTAC 57.891 33.333 0.00 0.00 0.00 2.50
657 658 6.699575 ATAAATGAAGTGCTCCATGTTACC 57.300 37.500 0.00 0.00 0.00 2.85
658 659 3.719268 ATGAAGTGCTCCATGTTACCA 57.281 42.857 0.00 0.00 0.00 3.25
659 660 2.778299 TGAAGTGCTCCATGTTACCAC 58.222 47.619 0.00 0.00 0.00 4.16
660 661 2.105649 TGAAGTGCTCCATGTTACCACA 59.894 45.455 0.00 0.00 37.31 4.17
661 662 2.185004 AGTGCTCCATGTTACCACAC 57.815 50.000 0.00 0.00 35.03 3.82
662 663 1.419762 AGTGCTCCATGTTACCACACA 59.580 47.619 0.00 0.00 35.03 3.72
663 664 2.040278 AGTGCTCCATGTTACCACACAT 59.960 45.455 0.00 0.00 37.93 3.21
664 665 3.263170 AGTGCTCCATGTTACCACACATA 59.737 43.478 0.00 0.00 35.51 2.29
665 666 4.080356 AGTGCTCCATGTTACCACACATAT 60.080 41.667 0.00 0.00 35.51 1.78
666 667 4.035558 GTGCTCCATGTTACCACACATATG 59.964 45.833 0.00 0.00 35.51 1.78
667 668 4.199310 GCTCCATGTTACCACACATATGT 58.801 43.478 1.41 1.41 40.80 2.29
668 669 4.640201 GCTCCATGTTACCACACATATGTT 59.360 41.667 5.37 0.00 36.72 2.71
669 670 5.820423 GCTCCATGTTACCACACATATGTTA 59.180 40.000 5.37 0.00 36.72 2.41
670 671 6.238374 GCTCCATGTTACCACACATATGTTAC 60.238 42.308 5.37 0.00 36.72 2.50
671 672 6.953101 TCCATGTTACCACACATATGTTACT 58.047 36.000 5.37 0.00 36.72 2.24
672 673 7.045416 TCCATGTTACCACACATATGTTACTC 58.955 38.462 5.37 0.00 36.72 2.59
673 674 6.260050 CCATGTTACCACACATATGTTACTCC 59.740 42.308 5.37 0.00 36.72 3.85
674 675 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
675 676 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
676 677 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
677 678 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
678 679 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
679 680 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
680 681 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
681 682 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
682 683 7.202056 CCACACATATGTTACTCCCCACTATAA 60.202 40.741 5.37 0.00 36.72 0.98
683 684 8.208224 CACACATATGTTACTCCCCACTATAAA 58.792 37.037 5.37 0.00 36.72 1.40
684 685 8.429641 ACACATATGTTACTCCCCACTATAAAG 58.570 37.037 5.37 0.00 34.46 1.85
685 686 7.878127 CACATATGTTACTCCCCACTATAAAGG 59.122 40.741 5.37 0.00 0.00 3.11
686 687 4.765813 TGTTACTCCCCACTATAAAGGC 57.234 45.455 0.00 0.00 0.00 4.35
687 688 3.457012 TGTTACTCCCCACTATAAAGGCC 59.543 47.826 0.00 0.00 0.00 5.19
688 689 1.519498 ACTCCCCACTATAAAGGCCC 58.481 55.000 0.00 0.00 0.00 5.80
689 690 1.274767 ACTCCCCACTATAAAGGCCCA 60.275 52.381 0.00 0.00 0.00 5.36
690 691 2.065799 CTCCCCACTATAAAGGCCCAT 58.934 52.381 0.00 0.00 0.00 4.00
691 692 1.780309 TCCCCACTATAAAGGCCCATG 59.220 52.381 0.00 0.00 0.00 3.66
692 693 1.499007 CCCCACTATAAAGGCCCATGT 59.501 52.381 0.00 0.00 0.00 3.21
693 694 2.091333 CCCCACTATAAAGGCCCATGTT 60.091 50.000 0.00 0.00 0.00 2.71
694 695 3.139397 CCCCACTATAAAGGCCCATGTTA 59.861 47.826 0.00 0.00 0.00 2.41
695 696 4.142038 CCCACTATAAAGGCCCATGTTAC 58.858 47.826 0.00 0.00 0.00 2.50
696 697 4.141251 CCCACTATAAAGGCCCATGTTACT 60.141 45.833 0.00 0.00 0.00 2.24
697 698 5.072600 CCCACTATAAAGGCCCATGTTACTA 59.927 44.000 0.00 0.00 0.00 1.82
698 699 6.231211 CCACTATAAAGGCCCATGTTACTAG 58.769 44.000 0.00 0.00 0.00 2.57
699 700 6.183361 CCACTATAAAGGCCCATGTTACTAGT 60.183 42.308 0.00 0.00 0.00 2.57
700 701 6.929606 CACTATAAAGGCCCATGTTACTAGTC 59.070 42.308 0.00 0.00 0.00 2.59
701 702 6.844917 ACTATAAAGGCCCATGTTACTAGTCT 59.155 38.462 0.00 0.00 0.00 3.24
702 703 8.008922 ACTATAAAGGCCCATGTTACTAGTCTA 58.991 37.037 0.00 0.00 0.00 2.59
703 704 7.873699 ATAAAGGCCCATGTTACTAGTCTAT 57.126 36.000 0.00 0.00 0.00 1.98
704 705 5.552870 AAGGCCCATGTTACTAGTCTATG 57.447 43.478 0.00 2.86 0.00 2.23
705 706 4.557705 AGGCCCATGTTACTAGTCTATGT 58.442 43.478 0.00 0.00 0.00 2.29
706 707 4.969359 AGGCCCATGTTACTAGTCTATGTT 59.031 41.667 0.00 0.00 0.00 2.71
707 708 6.141083 AGGCCCATGTTACTAGTCTATGTTA 58.859 40.000 0.00 0.00 0.00 2.41
708 709 6.041751 AGGCCCATGTTACTAGTCTATGTTAC 59.958 42.308 0.00 0.00 0.00 2.50
709 710 6.041751 GGCCCATGTTACTAGTCTATGTTACT 59.958 42.308 0.00 0.00 0.00 2.24
710 711 7.232127 GGCCCATGTTACTAGTCTATGTTACTA 59.768 40.741 0.00 0.00 0.00 1.82
711 712 8.804204 GCCCATGTTACTAGTCTATGTTACTAT 58.196 37.037 0.00 0.00 0.00 2.12
720 721 8.861086 ACTAGTCTATGTTACTATCCATTGTGG 58.139 37.037 0.00 0.00 39.43 4.17
721 722 6.525629 AGTCTATGTTACTATCCATTGTGGC 58.474 40.000 0.00 0.00 37.47 5.01
722 723 6.327626 AGTCTATGTTACTATCCATTGTGGCT 59.672 38.462 0.00 0.00 37.47 4.75
723 724 7.509318 AGTCTATGTTACTATCCATTGTGGCTA 59.491 37.037 0.00 0.00 37.47 3.93
724 725 7.815068 GTCTATGTTACTATCCATTGTGGCTAG 59.185 40.741 5.55 5.55 40.94 3.42
764 770 3.623060 GCATTCCGCTATACCCATACATG 59.377 47.826 0.00 0.00 37.77 3.21
887 909 3.227276 CCCGTCCAGCTCGCCTAT 61.227 66.667 0.00 0.00 0.00 2.57
888 910 1.901948 CCCGTCCAGCTCGCCTATA 60.902 63.158 0.00 0.00 0.00 1.31
889 911 1.461091 CCCGTCCAGCTCGCCTATAA 61.461 60.000 0.00 0.00 0.00 0.98
890 912 0.039074 CCGTCCAGCTCGCCTATAAG 60.039 60.000 0.00 0.00 0.00 1.73
891 913 0.952280 CGTCCAGCTCGCCTATAAGA 59.048 55.000 0.00 0.00 0.00 2.10
892 914 1.542030 CGTCCAGCTCGCCTATAAGAT 59.458 52.381 0.00 0.00 0.00 2.40
999 1132 8.398878 ACTATCTCCTCAGTAGTATTAGCAAC 57.601 38.462 0.00 0.00 0.00 4.17
1599 1808 4.380867 GCTACAATGAGTTGACAATTGGGG 60.381 45.833 10.83 6.90 38.71 4.96
1601 1810 2.899256 CAATGAGTTGACAATTGGGGGT 59.101 45.455 10.83 0.00 37.53 4.95
1614 1823 0.417437 TGGGGGTGAAGAGGATGAGA 59.583 55.000 0.00 0.00 0.00 3.27
1713 1922 7.174253 GGTTGTCCCGCATCATTAATAAAGATA 59.826 37.037 0.00 0.00 0.00 1.98
1830 2039 3.118454 CAAATGTCCGCGGCGACT 61.118 61.111 25.92 1.32 33.70 4.18
1889 2098 7.413657 GCGTTGGAATTGCTCTAAGTGTATAAA 60.414 37.037 0.00 0.00 0.00 1.40
2227 2437 3.932089 GTGCACAAATCCAAAACAACAGT 59.068 39.130 13.17 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.802607 CCCTCGCTAGTTCGTTGCTC 60.803 60.000 0.00 0.00 0.00 4.26
1 2 1.215647 CCCTCGCTAGTTCGTTGCT 59.784 57.895 0.00 0.00 0.00 3.91
4 5 1.183549 ACATCCCTCGCTAGTTCGTT 58.816 50.000 0.00 0.00 0.00 3.85
5 6 1.135083 CAACATCCCTCGCTAGTTCGT 60.135 52.381 0.00 0.00 0.00 3.85
6 7 1.560923 CAACATCCCTCGCTAGTTCG 58.439 55.000 0.00 0.00 0.00 3.95
7 8 1.291132 GCAACATCCCTCGCTAGTTC 58.709 55.000 0.00 0.00 0.00 3.01
8 9 0.460284 CGCAACATCCCTCGCTAGTT 60.460 55.000 0.00 0.00 0.00 2.24
9 10 1.141881 CGCAACATCCCTCGCTAGT 59.858 57.895 0.00 0.00 0.00 2.57
10 11 0.872021 GTCGCAACATCCCTCGCTAG 60.872 60.000 0.00 0.00 0.00 3.42
11 12 1.141019 GTCGCAACATCCCTCGCTA 59.859 57.895 0.00 0.00 0.00 4.26
12 13 2.125512 GTCGCAACATCCCTCGCT 60.126 61.111 0.00 0.00 0.00 4.93
13 14 1.815421 ATGTCGCAACATCCCTCGC 60.815 57.895 0.00 0.00 42.59 5.03
14 15 2.009108 CATGTCGCAACATCCCTCG 58.991 57.895 0.00 0.00 44.41 4.63
15 16 1.723870 GCATGTCGCAACATCCCTC 59.276 57.895 0.00 0.00 44.41 4.30
16 17 2.108514 CGCATGTCGCAACATCCCT 61.109 57.895 0.00 0.00 44.41 4.20
17 18 2.404789 CGCATGTCGCAACATCCC 59.595 61.111 0.00 0.00 44.41 3.85
18 19 2.404789 CCGCATGTCGCAACATCC 59.595 61.111 0.00 0.00 44.41 3.51
19 20 2.404789 CCCGCATGTCGCAACATC 59.595 61.111 0.00 0.00 44.41 3.06
22 23 4.465512 CAGCCCGCATGTCGCAAC 62.466 66.667 0.00 0.00 42.60 4.17
25 26 3.267597 AAAACAGCCCGCATGTCGC 62.268 57.895 0.00 0.00 36.73 5.19
26 27 1.442520 CAAAACAGCCCGCATGTCG 60.443 57.895 0.00 0.00 38.08 4.35
27 28 0.031994 AACAAAACAGCCCGCATGTC 59.968 50.000 0.00 0.00 0.00 3.06
28 29 0.249405 CAACAAAACAGCCCGCATGT 60.249 50.000 0.00 0.00 0.00 3.21
29 30 0.945265 CCAACAAAACAGCCCGCATG 60.945 55.000 0.00 0.00 0.00 4.06
30 31 1.112315 TCCAACAAAACAGCCCGCAT 61.112 50.000 0.00 0.00 0.00 4.73
31 32 1.323271 TTCCAACAAAACAGCCCGCA 61.323 50.000 0.00 0.00 0.00 5.69
32 33 0.874175 GTTCCAACAAAACAGCCCGC 60.874 55.000 0.00 0.00 0.00 6.13
33 34 0.249280 GGTTCCAACAAAACAGCCCG 60.249 55.000 0.00 0.00 0.00 6.13
34 35 0.249280 CGGTTCCAACAAAACAGCCC 60.249 55.000 0.00 0.00 0.00 5.19
35 36 0.741915 TCGGTTCCAACAAAACAGCC 59.258 50.000 0.00 0.00 0.00 4.85
36 37 1.133407 TGTCGGTTCCAACAAAACAGC 59.867 47.619 0.00 0.00 0.00 4.40
37 38 3.175929 GTTGTCGGTTCCAACAAAACAG 58.824 45.455 0.00 0.00 41.40 3.16
38 39 2.414293 CGTTGTCGGTTCCAACAAAACA 60.414 45.455 0.00 0.00 41.76 2.83
39 40 2.178783 CGTTGTCGGTTCCAACAAAAC 58.821 47.619 0.00 0.00 41.76 2.43
40 41 1.467713 GCGTTGTCGGTTCCAACAAAA 60.468 47.619 0.00 0.00 41.76 2.44
41 42 0.099082 GCGTTGTCGGTTCCAACAAA 59.901 50.000 0.00 0.00 41.76 2.83
42 43 0.745128 AGCGTTGTCGGTTCCAACAA 60.745 50.000 0.00 0.00 45.64 2.83
43 44 1.153329 AGCGTTGTCGGTTCCAACA 60.153 52.632 0.00 0.00 45.64 3.33
44 45 3.727146 AGCGTTGTCGGTTCCAAC 58.273 55.556 0.00 0.00 45.64 3.77
59 60 1.065551 CGCCCCTATGTAGCAAAAAGC 59.934 52.381 0.00 0.00 46.19 3.51
60 61 1.676006 CCGCCCCTATGTAGCAAAAAG 59.324 52.381 0.00 0.00 0.00 2.27
61 62 1.282447 TCCGCCCCTATGTAGCAAAAA 59.718 47.619 0.00 0.00 0.00 1.94
62 63 0.913205 TCCGCCCCTATGTAGCAAAA 59.087 50.000 0.00 0.00 0.00 2.44
63 64 1.136828 ATCCGCCCCTATGTAGCAAA 58.863 50.000 0.00 0.00 0.00 3.68
64 65 1.899814 CTATCCGCCCCTATGTAGCAA 59.100 52.381 0.00 0.00 0.00 3.91
65 66 1.076513 TCTATCCGCCCCTATGTAGCA 59.923 52.381 0.00 0.00 0.00 3.49
66 67 1.477295 GTCTATCCGCCCCTATGTAGC 59.523 57.143 0.00 0.00 0.00 3.58
67 68 1.743958 CGTCTATCCGCCCCTATGTAG 59.256 57.143 0.00 0.00 0.00 2.74
68 69 1.830279 CGTCTATCCGCCCCTATGTA 58.170 55.000 0.00 0.00 0.00 2.29
69 70 2.654802 CGTCTATCCGCCCCTATGT 58.345 57.895 0.00 0.00 0.00 2.29
80 81 4.899687 TCGTGCGCCGCGTCTATC 62.900 66.667 15.34 0.00 38.57 2.08
81 82 4.907034 CTCGTGCGCCGCGTCTAT 62.907 66.667 15.34 0.00 38.57 1.98
92 93 2.753966 ATGGTTGCATCGCTCGTGC 61.754 57.895 0.00 0.00 42.81 5.34
93 94 1.061411 CATGGTTGCATCGCTCGTG 59.939 57.895 0.00 0.00 0.00 4.35
94 95 0.108377 TACATGGTTGCATCGCTCGT 60.108 50.000 0.00 0.00 0.00 4.18
95 96 0.578683 CTACATGGTTGCATCGCTCG 59.421 55.000 0.00 0.00 0.00 5.03
96 97 0.305922 GCTACATGGTTGCATCGCTC 59.694 55.000 0.00 0.00 34.70 5.03
97 98 1.097547 GGCTACATGGTTGCATCGCT 61.098 55.000 0.00 0.00 36.13 4.93
98 99 1.356624 GGCTACATGGTTGCATCGC 59.643 57.895 0.00 0.00 36.13 4.58
99 100 0.659427 CTGGCTACATGGTTGCATCG 59.341 55.000 0.00 0.00 36.13 3.84
100 101 0.383231 GCTGGCTACATGGTTGCATC 59.617 55.000 0.00 0.00 36.13 3.91
101 102 1.378882 CGCTGGCTACATGGTTGCAT 61.379 55.000 0.00 0.00 36.13 3.96
102 103 2.039974 CGCTGGCTACATGGTTGCA 61.040 57.895 0.00 0.00 36.13 4.08
103 104 1.709147 CTCGCTGGCTACATGGTTGC 61.709 60.000 0.00 0.00 33.89 4.17
104 105 1.709147 GCTCGCTGGCTACATGGTTG 61.709 60.000 0.00 0.00 0.00 3.77
105 106 1.450312 GCTCGCTGGCTACATGGTT 60.450 57.895 0.00 0.00 0.00 3.67
106 107 2.187946 GCTCGCTGGCTACATGGT 59.812 61.111 0.00 0.00 0.00 3.55
107 108 1.886313 CAGCTCGCTGGCTACATGG 60.886 63.158 10.98 0.00 41.00 3.66
108 109 2.532256 GCAGCTCGCTGGCTACATG 61.532 63.158 19.42 0.00 43.77 3.21
109 110 2.202987 GCAGCTCGCTGGCTACAT 60.203 61.111 19.42 0.00 43.77 2.29
110 111 4.801624 CGCAGCTCGCTGGCTACA 62.802 66.667 19.42 0.00 43.77 2.74
129 130 4.498520 ATGGCGTCGCTCTCACCG 62.499 66.667 18.11 0.00 0.00 4.94
130 131 2.887568 CATGGCGTCGCTCTCACC 60.888 66.667 18.11 0.00 0.00 4.02
131 132 2.887568 CCATGGCGTCGCTCTCAC 60.888 66.667 18.11 0.00 0.00 3.51
132 133 3.068064 TCCATGGCGTCGCTCTCA 61.068 61.111 18.11 7.17 0.00 3.27
133 134 2.279120 CTCCATGGCGTCGCTCTC 60.279 66.667 18.11 0.57 0.00 3.20
134 135 3.842923 CCTCCATGGCGTCGCTCT 61.843 66.667 18.11 1.40 0.00 4.09
143 144 1.918467 TTCTGCCTCTGCCTCCATGG 61.918 60.000 4.97 4.97 36.33 3.66
144 145 0.034767 TTTCTGCCTCTGCCTCCATG 60.035 55.000 0.00 0.00 36.33 3.66
145 146 0.255318 CTTTCTGCCTCTGCCTCCAT 59.745 55.000 0.00 0.00 36.33 3.41
146 147 1.681666 CTTTCTGCCTCTGCCTCCA 59.318 57.895 0.00 0.00 36.33 3.86
147 148 1.748500 GCTTTCTGCCTCTGCCTCC 60.749 63.158 0.00 0.00 36.33 4.30
148 149 3.902318 GCTTTCTGCCTCTGCCTC 58.098 61.111 0.00 0.00 36.33 4.70
158 159 4.715523 TTCCCCCGCGGCTTTCTG 62.716 66.667 22.85 4.41 0.00 3.02
159 160 4.717313 GTTCCCCCGCGGCTTTCT 62.717 66.667 22.85 0.00 0.00 2.52
165 166 4.460683 TTCATCGTTCCCCCGCGG 62.461 66.667 21.04 21.04 0.00 6.46
166 167 3.192922 GTTCATCGTTCCCCCGCG 61.193 66.667 0.00 0.00 0.00 6.46
167 168 1.644786 CTTGTTCATCGTTCCCCCGC 61.645 60.000 0.00 0.00 0.00 6.13
168 169 1.644786 GCTTGTTCATCGTTCCCCCG 61.645 60.000 0.00 0.00 0.00 5.73
169 170 0.608035 TGCTTGTTCATCGTTCCCCC 60.608 55.000 0.00 0.00 0.00 5.40
170 171 0.804989 CTGCTTGTTCATCGTTCCCC 59.195 55.000 0.00 0.00 0.00 4.81
171 172 0.804989 CCTGCTTGTTCATCGTTCCC 59.195 55.000 0.00 0.00 0.00 3.97
172 173 0.804989 CCCTGCTTGTTCATCGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
173 174 0.804989 CCCCTGCTTGTTCATCGTTC 59.195 55.000 0.00 0.00 0.00 3.95
174 175 0.609131 CCCCCTGCTTGTTCATCGTT 60.609 55.000 0.00 0.00 0.00 3.85
175 176 1.002134 CCCCCTGCTTGTTCATCGT 60.002 57.895 0.00 0.00 0.00 3.73
176 177 0.107017 ATCCCCCTGCTTGTTCATCG 60.107 55.000 0.00 0.00 0.00 3.84
177 178 2.149973 AATCCCCCTGCTTGTTCATC 57.850 50.000 0.00 0.00 0.00 2.92
178 179 2.181975 CAAATCCCCCTGCTTGTTCAT 58.818 47.619 0.00 0.00 0.00 2.57
179 180 1.631405 CAAATCCCCCTGCTTGTTCA 58.369 50.000 0.00 0.00 0.00 3.18
180 181 0.247460 GCAAATCCCCCTGCTTGTTC 59.753 55.000 0.00 0.00 35.62 3.18
181 182 1.535204 CGCAAATCCCCCTGCTTGTT 61.535 55.000 0.00 0.00 36.38 2.83
182 183 1.978617 CGCAAATCCCCCTGCTTGT 60.979 57.895 0.00 0.00 36.38 3.16
183 184 1.978617 ACGCAAATCCCCCTGCTTG 60.979 57.895 0.00 0.00 36.38 4.01
184 185 1.978617 CACGCAAATCCCCCTGCTT 60.979 57.895 0.00 0.00 36.38 3.91
185 186 2.361610 CACGCAAATCCCCCTGCT 60.362 61.111 0.00 0.00 36.38 4.24
186 187 2.361104 TCACGCAAATCCCCCTGC 60.361 61.111 0.00 0.00 35.14 4.85
187 188 2.046285 GGTCACGCAAATCCCCCTG 61.046 63.158 0.00 0.00 0.00 4.45
188 189 2.355115 GGTCACGCAAATCCCCCT 59.645 61.111 0.00 0.00 0.00 4.79
189 190 3.131478 CGGTCACGCAAATCCCCC 61.131 66.667 0.00 0.00 0.00 5.40
190 191 3.131478 CCGGTCACGCAAATCCCC 61.131 66.667 0.00 0.00 39.22 4.81
191 192 3.810896 GCCGGTCACGCAAATCCC 61.811 66.667 1.90 0.00 39.22 3.85
192 193 4.160635 CGCCGGTCACGCAAATCC 62.161 66.667 1.90 0.00 39.22 3.01
193 194 3.362851 GACGCCGGTCACGCAAATC 62.363 63.158 1.90 0.00 42.91 2.17
194 195 3.419759 GACGCCGGTCACGCAAAT 61.420 61.111 1.90 0.00 42.91 2.32
208 209 3.662623 TTCCTTCTCGCGAGCGACG 62.663 63.158 30.97 17.06 44.01 5.12
209 210 1.406970 CTTTCCTTCTCGCGAGCGAC 61.407 60.000 30.97 0.00 44.01 5.19
210 211 1.154016 CTTTCCTTCTCGCGAGCGA 60.154 57.895 30.97 21.39 46.87 4.93
211 212 2.161486 CCTTTCCTTCTCGCGAGCG 61.161 63.158 30.97 22.25 41.35 5.03
212 213 1.811679 CCCTTTCCTTCTCGCGAGC 60.812 63.158 30.97 0.00 0.00 5.03
213 214 0.458716 GTCCCTTTCCTTCTCGCGAG 60.459 60.000 30.03 30.03 0.00 5.03
214 215 1.590147 GTCCCTTTCCTTCTCGCGA 59.410 57.895 9.26 9.26 0.00 5.87
215 216 1.805945 CGTCCCTTTCCTTCTCGCG 60.806 63.158 0.00 0.00 0.00 5.87
216 217 1.014564 CACGTCCCTTTCCTTCTCGC 61.015 60.000 0.00 0.00 0.00 5.03
217 218 0.317479 ACACGTCCCTTTCCTTCTCG 59.683 55.000 0.00 0.00 0.00 4.04
218 219 1.797025 CACACGTCCCTTTCCTTCTC 58.203 55.000 0.00 0.00 0.00 2.87
219 220 0.250338 GCACACGTCCCTTTCCTTCT 60.250 55.000 0.00 0.00 0.00 2.85
220 221 1.566018 CGCACACGTCCCTTTCCTTC 61.566 60.000 0.00 0.00 33.53 3.46
221 222 1.597027 CGCACACGTCCCTTTCCTT 60.597 57.895 0.00 0.00 33.53 3.36
222 223 2.030562 CGCACACGTCCCTTTCCT 59.969 61.111 0.00 0.00 33.53 3.36
223 224 2.027625 CTCGCACACGTCCCTTTCC 61.028 63.158 0.00 0.00 41.18 3.13
224 225 2.027625 CCTCGCACACGTCCCTTTC 61.028 63.158 0.00 0.00 41.18 2.62
225 226 2.030562 CCTCGCACACGTCCCTTT 59.969 61.111 0.00 0.00 41.18 3.11
226 227 4.681978 GCCTCGCACACGTCCCTT 62.682 66.667 0.00 0.00 41.18 3.95
228 229 4.980805 TTGCCTCGCACACGTCCC 62.981 66.667 0.00 0.00 38.71 4.46
229 230 2.740714 GATTGCCTCGCACACGTCC 61.741 63.158 0.00 0.00 38.71 4.79
230 231 2.740714 GGATTGCCTCGCACACGTC 61.741 63.158 0.00 0.00 38.71 4.34
231 232 1.884075 TAGGATTGCCTCGCACACGT 61.884 55.000 0.00 0.00 45.54 4.49
232 233 0.530650 ATAGGATTGCCTCGCACACG 60.531 55.000 0.00 0.00 45.54 4.49
233 234 0.940126 CATAGGATTGCCTCGCACAC 59.060 55.000 0.00 0.00 45.54 3.82
234 235 0.179048 CCATAGGATTGCCTCGCACA 60.179 55.000 0.00 0.00 45.54 4.57
235 236 0.179045 ACCATAGGATTGCCTCGCAC 60.179 55.000 0.00 0.00 45.54 5.34
236 237 0.106708 GACCATAGGATTGCCTCGCA 59.893 55.000 0.00 0.00 45.54 5.10
237 238 0.603975 GGACCATAGGATTGCCTCGC 60.604 60.000 0.00 0.00 45.54 5.03
238 239 0.758734 TGGACCATAGGATTGCCTCG 59.241 55.000 0.00 0.00 45.54 4.63
239 240 1.072965 CCTGGACCATAGGATTGCCTC 59.927 57.143 0.00 0.00 45.54 4.70
241 242 0.111253 CCCTGGACCATAGGATTGCC 59.889 60.000 4.93 0.00 37.52 4.52
242 243 0.538287 GCCCTGGACCATAGGATTGC 60.538 60.000 13.70 0.28 37.52 3.56
243 244 0.250467 CGCCCTGGACCATAGGATTG 60.250 60.000 13.70 0.66 37.52 2.67
244 245 2.056906 GCGCCCTGGACCATAGGATT 62.057 60.000 13.70 0.00 37.52 3.01
245 246 2.520536 GCGCCCTGGACCATAGGAT 61.521 63.158 13.70 0.00 37.52 3.24
246 247 3.161450 GCGCCCTGGACCATAGGA 61.161 66.667 13.70 0.00 37.52 2.94
247 248 3.479203 TGCGCCCTGGACCATAGG 61.479 66.667 4.18 0.00 35.01 2.57
248 249 2.203070 GTGCGCCCTGGACCATAG 60.203 66.667 4.18 0.00 31.75 2.23
249 250 4.155733 CGTGCGCCCTGGACCATA 62.156 66.667 4.18 0.00 35.07 2.74
252 253 4.157120 ATACGTGCGCCCTGGACC 62.157 66.667 4.18 0.00 35.07 4.46
253 254 2.585247 GATACGTGCGCCCTGGAC 60.585 66.667 4.18 0.00 35.21 4.02
254 255 3.071837 TGATACGTGCGCCCTGGA 61.072 61.111 4.18 0.00 0.00 3.86
255 256 2.586079 CTGATACGTGCGCCCTGG 60.586 66.667 4.18 0.00 0.00 4.45
256 257 2.586079 CCTGATACGTGCGCCCTG 60.586 66.667 4.18 0.00 0.00 4.45
257 258 4.530857 GCCTGATACGTGCGCCCT 62.531 66.667 4.18 0.00 0.00 5.19
262 263 3.264897 CAGCCGCCTGATACGTGC 61.265 66.667 0.00 0.00 41.77 5.34
263 264 3.264897 GCAGCCGCCTGATACGTG 61.265 66.667 0.00 0.00 41.77 4.49
264 265 4.873129 CGCAGCCGCCTGATACGT 62.873 66.667 0.00 0.00 41.77 3.57
283 284 1.291906 CAAATTTGGGCCGGTCACC 59.708 57.895 9.07 6.71 0.00 4.02
284 285 1.291906 CCAAATTTGGGCCGGTCAC 59.708 57.895 26.87 0.00 44.70 3.67
285 286 3.784573 CCAAATTTGGGCCGGTCA 58.215 55.556 26.87 1.16 44.70 4.02
294 295 1.211709 GTCGACCGGCCCAAATTTG 59.788 57.895 11.40 11.40 0.00 2.32
295 296 1.974875 GGTCGACCGGCCCAAATTT 60.975 57.895 20.85 0.00 32.85 1.82
296 297 2.360726 GGTCGACCGGCCCAAATT 60.361 61.111 20.85 0.00 32.85 1.82
308 309 3.204827 GTACTAGGCGCCGGTCGA 61.205 66.667 26.37 11.60 41.67 4.20
309 310 3.207669 AGTACTAGGCGCCGGTCG 61.208 66.667 26.37 16.40 42.12 4.79
310 311 2.412112 CAGTACTAGGCGCCGGTC 59.588 66.667 26.37 18.67 0.00 4.79
311 312 3.834799 GCAGTACTAGGCGCCGGT 61.835 66.667 25.98 25.98 0.00 5.28
312 313 4.587189 GGCAGTACTAGGCGCCGG 62.587 72.222 23.20 20.35 34.26 6.13
313 314 4.587189 GGGCAGTACTAGGCGCCG 62.587 72.222 23.20 10.77 45.85 6.46
314 315 2.253403 AAAGGGCAGTACTAGGCGCC 62.253 60.000 21.89 21.89 43.22 6.53
315 316 0.392595 AAAAGGGCAGTACTAGGCGC 60.393 55.000 12.68 12.68 42.61 6.53
316 317 2.973694 TAAAAGGGCAGTACTAGGCG 57.026 50.000 0.00 0.00 0.00 5.52
317 318 4.482952 TCTTAAAAGGGCAGTACTAGGC 57.517 45.455 0.00 2.62 0.00 3.93
318 319 5.429130 CCTTCTTAAAAGGGCAGTACTAGG 58.571 45.833 0.00 0.00 33.79 3.02
319 320 4.876679 GCCTTCTTAAAAGGGCAGTACTAG 59.123 45.833 14.41 0.00 43.59 2.57
320 321 4.534897 AGCCTTCTTAAAAGGGCAGTACTA 59.465 41.667 4.57 0.00 46.23 1.82
321 322 3.330998 AGCCTTCTTAAAAGGGCAGTACT 59.669 43.478 4.57 0.00 46.23 2.73
322 323 3.687125 AGCCTTCTTAAAAGGGCAGTAC 58.313 45.455 4.57 0.00 46.23 2.73
323 324 4.382386 AAGCCTTCTTAAAAGGGCAGTA 57.618 40.909 4.57 0.00 46.23 2.74
324 325 2.980246 AGCCTTCTTAAAAGGGCAGT 57.020 45.000 4.57 0.00 46.23 4.40
325 326 5.243954 ACTTAAAGCCTTCTTAAAAGGGCAG 59.756 40.000 4.57 0.00 46.23 4.85
326 327 5.010617 CACTTAAAGCCTTCTTAAAAGGGCA 59.989 40.000 4.57 0.00 46.23 5.36
327 328 5.470368 CACTTAAAGCCTTCTTAAAAGGGC 58.530 41.667 14.41 6.25 44.38 5.19
328 329 5.773176 TCCACTTAAAGCCTTCTTAAAAGGG 59.227 40.000 14.41 0.00 37.88 3.95
329 330 6.894339 TCCACTTAAAGCCTTCTTAAAAGG 57.106 37.500 10.40 10.40 40.39 3.11
330 331 7.814587 CCATTCCACTTAAAGCCTTCTTAAAAG 59.185 37.037 0.00 0.00 34.30 2.27
331 332 7.666623 CCATTCCACTTAAAGCCTTCTTAAAA 58.333 34.615 0.00 0.00 31.02 1.52
332 333 6.295067 GCCATTCCACTTAAAGCCTTCTTAAA 60.295 38.462 0.00 0.00 31.02 1.52
333 334 5.185056 GCCATTCCACTTAAAGCCTTCTTAA 59.815 40.000 0.00 0.00 31.02 1.85
334 335 4.705023 GCCATTCCACTTAAAGCCTTCTTA 59.295 41.667 0.00 0.00 31.02 2.10
335 336 3.511540 GCCATTCCACTTAAAGCCTTCTT 59.488 43.478 0.00 0.00 0.00 2.52
336 337 3.092301 GCCATTCCACTTAAAGCCTTCT 58.908 45.455 0.00 0.00 0.00 2.85
337 338 2.825532 TGCCATTCCACTTAAAGCCTTC 59.174 45.455 0.00 0.00 0.00 3.46
338 339 2.888212 TGCCATTCCACTTAAAGCCTT 58.112 42.857 0.00 0.00 0.00 4.35
339 340 2.603075 TGCCATTCCACTTAAAGCCT 57.397 45.000 0.00 0.00 0.00 4.58
340 341 3.893326 AATGCCATTCCACTTAAAGCC 57.107 42.857 0.00 0.00 0.00 4.35
341 342 5.582689 ACTAATGCCATTCCACTTAAAGC 57.417 39.130 0.00 0.00 0.00 3.51
344 345 9.667107 GCTATATACTAATGCCATTCCACTTAA 57.333 33.333 0.00 0.00 0.00 1.85
345 346 8.265055 GGCTATATACTAATGCCATTCCACTTA 58.735 37.037 0.00 0.00 42.79 2.24
346 347 7.112779 GGCTATATACTAATGCCATTCCACTT 58.887 38.462 0.00 0.00 42.79 3.16
347 348 6.653989 GGCTATATACTAATGCCATTCCACT 58.346 40.000 0.00 0.00 42.79 4.00
348 349 6.927294 GGCTATATACTAATGCCATTCCAC 57.073 41.667 0.00 0.00 42.79 4.02
355 356 4.192317 GGTGCTGGCTATATACTAATGCC 58.808 47.826 3.54 3.54 43.49 4.40
356 357 4.192317 GGGTGCTGGCTATATACTAATGC 58.808 47.826 0.00 0.00 0.00 3.56
357 358 4.680708 CGGGGTGCTGGCTATATACTAATG 60.681 50.000 0.00 0.00 0.00 1.90
358 359 3.451178 CGGGGTGCTGGCTATATACTAAT 59.549 47.826 0.00 0.00 0.00 1.73
359 360 2.829720 CGGGGTGCTGGCTATATACTAA 59.170 50.000 0.00 0.00 0.00 2.24
360 361 2.453521 CGGGGTGCTGGCTATATACTA 58.546 52.381 0.00 0.00 0.00 1.82
361 362 1.267121 CGGGGTGCTGGCTATATACT 58.733 55.000 0.00 0.00 0.00 2.12
362 363 0.249398 CCGGGGTGCTGGCTATATAC 59.751 60.000 0.00 0.00 0.00 1.47
363 364 2.678786 CCGGGGTGCTGGCTATATA 58.321 57.895 0.00 0.00 0.00 0.86
364 365 3.483587 CCGGGGTGCTGGCTATAT 58.516 61.111 0.00 0.00 0.00 0.86
370 371 1.768684 ATACATAGCCGGGGTGCTGG 61.769 60.000 9.43 0.00 42.77 4.85
371 372 0.108585 AATACATAGCCGGGGTGCTG 59.891 55.000 9.43 8.88 42.77 4.41
372 373 1.623811 CTAATACATAGCCGGGGTGCT 59.376 52.381 9.43 0.00 45.38 4.40
373 374 2.094762 CTAATACATAGCCGGGGTGC 57.905 55.000 9.43 0.00 0.00 5.01
382 383 7.976175 TCGAATTAGAGCATGGCTAATACATAG 59.024 37.037 0.00 0.00 39.88 2.23
383 384 7.759886 GTCGAATTAGAGCATGGCTAATACATA 59.240 37.037 0.00 0.00 39.88 2.29
384 385 6.591834 GTCGAATTAGAGCATGGCTAATACAT 59.408 38.462 0.00 0.00 39.88 2.29
385 386 5.926542 GTCGAATTAGAGCATGGCTAATACA 59.073 40.000 0.00 0.00 39.88 2.29
386 387 5.926542 TGTCGAATTAGAGCATGGCTAATAC 59.073 40.000 0.00 0.00 39.88 1.89
387 388 6.096673 TGTCGAATTAGAGCATGGCTAATA 57.903 37.500 0.00 0.00 39.88 0.98
388 389 4.960938 TGTCGAATTAGAGCATGGCTAAT 58.039 39.130 0.00 0.00 39.88 1.73
389 390 4.371786 CTGTCGAATTAGAGCATGGCTAA 58.628 43.478 0.00 0.00 39.88 3.09
390 391 3.800261 GCTGTCGAATTAGAGCATGGCTA 60.800 47.826 0.00 0.00 39.88 3.93
391 392 2.831333 CTGTCGAATTAGAGCATGGCT 58.169 47.619 0.00 0.00 43.88 4.75
392 393 1.262683 GCTGTCGAATTAGAGCATGGC 59.737 52.381 0.00 0.00 35.88 4.40
393 394 1.524355 CGCTGTCGAATTAGAGCATGG 59.476 52.381 0.00 0.00 35.57 3.66
394 395 1.524355 CCGCTGTCGAATTAGAGCATG 59.476 52.381 0.00 0.00 35.57 4.06
395 396 1.858091 CCGCTGTCGAATTAGAGCAT 58.142 50.000 0.00 0.00 35.57 3.79
396 397 0.806102 GCCGCTGTCGAATTAGAGCA 60.806 55.000 0.00 0.00 35.57 4.26
397 398 0.806102 TGCCGCTGTCGAATTAGAGC 60.806 55.000 0.00 0.00 38.10 4.09
398 399 0.924090 GTGCCGCTGTCGAATTAGAG 59.076 55.000 0.00 0.00 38.10 2.43
399 400 0.459585 GGTGCCGCTGTCGAATTAGA 60.460 55.000 0.00 0.00 38.10 2.10
400 401 0.460284 AGGTGCCGCTGTCGAATTAG 60.460 55.000 0.00 0.00 38.10 1.73
401 402 0.036765 AAGGTGCCGCTGTCGAATTA 60.037 50.000 0.00 0.00 38.10 1.40
402 403 1.302511 AAGGTGCCGCTGTCGAATT 60.303 52.632 0.00 0.00 38.10 2.17
403 404 2.034879 CAAGGTGCCGCTGTCGAAT 61.035 57.895 0.00 0.00 38.10 3.34
404 405 2.664851 CAAGGTGCCGCTGTCGAA 60.665 61.111 0.00 0.00 38.10 3.71
414 415 2.383527 CGTCGAGAAGGCAAGGTGC 61.384 63.158 0.00 0.00 44.08 5.01
415 416 1.738099 CCGTCGAGAAGGCAAGGTG 60.738 63.158 0.00 0.00 0.00 4.00
416 417 2.657237 CCGTCGAGAAGGCAAGGT 59.343 61.111 0.00 0.00 0.00 3.50
428 429 4.323843 CGGGTCCTATCGCCGTCG 62.324 72.222 0.00 0.00 0.00 5.12
429 430 3.191637 GACGGGTCCTATCGCCGTC 62.192 68.421 11.73 11.73 40.66 4.79
430 431 3.214845 GACGGGTCCTATCGCCGT 61.215 66.667 0.00 0.00 37.20 5.68
431 432 4.323843 CGACGGGTCCTATCGCCG 62.324 72.222 0.00 0.00 0.00 6.46
432 433 3.974757 CCGACGGGTCCTATCGCC 61.975 72.222 5.81 0.00 34.52 5.54
433 434 4.642542 GCCGACGGGTCCTATCGC 62.643 72.222 17.22 0.00 34.52 4.58
434 435 3.214123 TGCCGACGGGTCCTATCG 61.214 66.667 17.22 7.99 34.97 2.92
435 436 2.416260 GTGCCGACGGGTCCTATC 59.584 66.667 17.22 0.00 34.97 2.08
436 437 3.524606 CGTGCCGACGGGTCCTAT 61.525 66.667 17.22 0.00 42.18 2.57
453 454 1.819903 GGTAGTCTGAGGCGGATATCC 59.180 57.143 12.14 12.14 0.00 2.59
454 455 1.819903 GGGTAGTCTGAGGCGGATATC 59.180 57.143 0.00 0.00 0.00 1.63
455 456 1.147191 TGGGTAGTCTGAGGCGGATAT 59.853 52.381 0.00 0.00 0.00 1.63
456 457 0.554305 TGGGTAGTCTGAGGCGGATA 59.446 55.000 0.00 0.00 0.00 2.59
457 458 1.043673 GTGGGTAGTCTGAGGCGGAT 61.044 60.000 0.00 0.00 0.00 4.18
458 459 1.681327 GTGGGTAGTCTGAGGCGGA 60.681 63.158 0.00 0.00 0.00 5.54
459 460 1.949847 CTGTGGGTAGTCTGAGGCGG 61.950 65.000 0.00 0.00 0.00 6.13
460 461 1.251527 ACTGTGGGTAGTCTGAGGCG 61.252 60.000 0.00 0.00 0.00 5.52
461 462 0.247736 CACTGTGGGTAGTCTGAGGC 59.752 60.000 0.00 0.00 0.00 4.70
462 463 0.898320 CCACTGTGGGTAGTCTGAGG 59.102 60.000 19.23 0.00 32.67 3.86
473 474 2.838202 ACCTATGTTACTCCCACTGTGG 59.162 50.000 20.01 20.01 37.25 4.17
474 475 4.710375 ACTACCTATGTTACTCCCACTGTG 59.290 45.833 0.00 0.00 0.00 3.66
475 476 4.944177 ACTACCTATGTTACTCCCACTGT 58.056 43.478 0.00 0.00 0.00 3.55
476 477 6.379133 TGTTACTACCTATGTTACTCCCACTG 59.621 42.308 0.00 0.00 0.00 3.66
477 478 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
478 479 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
479 480 7.069085 GTGATGTTACTACCTATGTTACTCCCA 59.931 40.741 0.00 0.00 0.00 4.37
480 481 7.069085 TGTGATGTTACTACCTATGTTACTCCC 59.931 40.741 0.00 0.00 0.00 4.30
481 482 7.919621 GTGTGATGTTACTACCTATGTTACTCC 59.080 40.741 0.00 0.00 0.00 3.85
482 483 8.464404 TGTGTGATGTTACTACCTATGTTACTC 58.536 37.037 0.00 0.00 0.00 2.59
483 484 8.357290 TGTGTGATGTTACTACCTATGTTACT 57.643 34.615 0.00 0.00 0.00 2.24
486 487 9.982651 GATATGTGTGATGTTACTACCTATGTT 57.017 33.333 0.00 0.00 0.00 2.71
487 488 9.368416 AGATATGTGTGATGTTACTACCTATGT 57.632 33.333 0.00 0.00 0.00 2.29
490 491 9.516546 CCTAGATATGTGTGATGTTACTACCTA 57.483 37.037 0.00 0.00 0.00 3.08
491 492 8.005388 ACCTAGATATGTGTGATGTTACTACCT 58.995 37.037 0.00 0.00 0.00 3.08
492 493 8.179509 ACCTAGATATGTGTGATGTTACTACC 57.820 38.462 0.00 0.00 0.00 3.18
511 512 9.987272 CATGTCACATCATCTATTTAACCTAGA 57.013 33.333 0.00 0.00 0.00 2.43
512 513 9.770097 ACATGTCACATCATCTATTTAACCTAG 57.230 33.333 0.00 0.00 0.00 3.02
539 540 9.401058 CCACTACCATCTCTTTCTTCATTTATT 57.599 33.333 0.00 0.00 0.00 1.40
540 541 8.552296 ACCACTACCATCTCTTTCTTCATTTAT 58.448 33.333 0.00 0.00 0.00 1.40
541 542 7.918076 ACCACTACCATCTCTTTCTTCATTTA 58.082 34.615 0.00 0.00 0.00 1.40
542 543 6.784031 ACCACTACCATCTCTTTCTTCATTT 58.216 36.000 0.00 0.00 0.00 2.32
543 544 6.380079 ACCACTACCATCTCTTTCTTCATT 57.620 37.500 0.00 0.00 0.00 2.57
544 545 7.038302 TGTTACCACTACCATCTCTTTCTTCAT 60.038 37.037 0.00 0.00 0.00 2.57
545 546 6.269077 TGTTACCACTACCATCTCTTTCTTCA 59.731 38.462 0.00 0.00 0.00 3.02
546 547 6.698380 TGTTACCACTACCATCTCTTTCTTC 58.302 40.000 0.00 0.00 0.00 2.87
547 548 6.681729 TGTTACCACTACCATCTCTTTCTT 57.318 37.500 0.00 0.00 0.00 2.52
548 549 6.875972 ATGTTACCACTACCATCTCTTTCT 57.124 37.500 0.00 0.00 0.00 2.52
549 550 6.702282 GCTATGTTACCACTACCATCTCTTTC 59.298 42.308 0.00 0.00 0.00 2.62
550 551 6.384305 AGCTATGTTACCACTACCATCTCTTT 59.616 38.462 0.00 0.00 0.00 2.52
551 552 5.900123 AGCTATGTTACCACTACCATCTCTT 59.100 40.000 0.00 0.00 0.00 2.85
552 553 5.459505 AGCTATGTTACCACTACCATCTCT 58.540 41.667 0.00 0.00 0.00 3.10
553 554 5.793030 AGCTATGTTACCACTACCATCTC 57.207 43.478 0.00 0.00 0.00 2.75
554 555 6.374588 ACTAGCTATGTTACCACTACCATCT 58.625 40.000 0.00 0.00 0.00 2.90
555 556 6.651975 ACTAGCTATGTTACCACTACCATC 57.348 41.667 0.00 0.00 0.00 3.51
556 557 7.783596 AGTAACTAGCTATGTTACCACTACCAT 59.216 37.037 25.92 13.30 46.31 3.55
557 558 7.121382 AGTAACTAGCTATGTTACCACTACCA 58.879 38.462 25.92 4.92 46.31 3.25
558 559 7.579761 AGTAACTAGCTATGTTACCACTACC 57.420 40.000 25.92 11.98 46.31 3.18
559 560 9.336171 AGTAGTAACTAGCTATGTTACCACTAC 57.664 37.037 26.20 23.96 44.53 2.73
561 562 9.558396 CTAGTAGTAACTAGCTATGTTACCACT 57.442 37.037 27.98 27.98 46.53 4.00
579 580 9.895138 TGTGTGATGTTACTCATACTAGTAGTA 57.105 33.333 12.38 12.38 37.92 1.82
580 581 8.803397 TGTGTGATGTTACTCATACTAGTAGT 57.197 34.615 8.85 8.14 37.92 2.73
586 587 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
587 588 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
588 589 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
589 590 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
590 591 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
591 592 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
592 593 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
593 594 6.094048 ACTTGCCTTGATATGTGTGATGTTAC 59.906 38.462 0.00 0.00 0.00 2.50
594 595 6.179756 ACTTGCCTTGATATGTGTGATGTTA 58.820 36.000 0.00 0.00 0.00 2.41
595 596 5.012239 ACTTGCCTTGATATGTGTGATGTT 58.988 37.500 0.00 0.00 0.00 2.71
596 597 4.592942 ACTTGCCTTGATATGTGTGATGT 58.407 39.130 0.00 0.00 0.00 3.06
597 598 5.106038 ACAACTTGCCTTGATATGTGTGATG 60.106 40.000 0.00 0.00 0.00 3.07
598 599 5.012239 ACAACTTGCCTTGATATGTGTGAT 58.988 37.500 0.00 0.00 0.00 3.06
599 600 4.216042 CACAACTTGCCTTGATATGTGTGA 59.784 41.667 0.00 0.00 33.76 3.58
600 601 4.022935 ACACAACTTGCCTTGATATGTGTG 60.023 41.667 7.74 0.00 45.66 3.82
601 602 4.144297 ACACAACTTGCCTTGATATGTGT 58.856 39.130 3.04 3.04 43.46 3.72
602 603 4.456911 AGACACAACTTGCCTTGATATGTG 59.543 41.667 0.00 0.00 41.69 3.21
603 604 4.655963 AGACACAACTTGCCTTGATATGT 58.344 39.130 0.00 0.00 0.00 2.29
604 605 6.932356 ATAGACACAACTTGCCTTGATATG 57.068 37.500 0.00 0.00 0.00 1.78
605 606 7.796054 ACTATAGACACAACTTGCCTTGATAT 58.204 34.615 6.78 0.00 0.00 1.63
606 607 7.124298 AGACTATAGACACAACTTGCCTTGATA 59.876 37.037 6.78 0.00 0.00 2.15
607 608 6.054860 ACTATAGACACAACTTGCCTTGAT 57.945 37.500 6.78 0.00 0.00 2.57
608 609 5.246203 AGACTATAGACACAACTTGCCTTGA 59.754 40.000 6.78 0.00 0.00 3.02
609 610 5.482908 AGACTATAGACACAACTTGCCTTG 58.517 41.667 6.78 0.00 0.00 3.61
610 611 5.746990 AGACTATAGACACAACTTGCCTT 57.253 39.130 6.78 0.00 0.00 4.35
611 612 6.852420 TTAGACTATAGACACAACTTGCCT 57.148 37.500 6.78 0.00 0.00 4.75
612 613 9.595823 TTTATTAGACTATAGACACAACTTGCC 57.404 33.333 6.78 0.00 0.00 4.52
626 627 9.499479 CATGGAGCACTTCATTTATTAGACTAT 57.501 33.333 0.00 0.00 0.00 2.12
627 628 8.486210 ACATGGAGCACTTCATTTATTAGACTA 58.514 33.333 0.00 0.00 0.00 2.59
628 629 7.341805 ACATGGAGCACTTCATTTATTAGACT 58.658 34.615 0.00 0.00 0.00 3.24
629 630 7.559590 ACATGGAGCACTTCATTTATTAGAC 57.440 36.000 0.00 0.00 0.00 2.59
630 631 9.109393 GTAACATGGAGCACTTCATTTATTAGA 57.891 33.333 0.00 0.00 0.00 2.10
631 632 8.345565 GGTAACATGGAGCACTTCATTTATTAG 58.654 37.037 0.00 0.00 0.00 1.73
632 633 7.831690 TGGTAACATGGAGCACTTCATTTATTA 59.168 33.333 0.00 0.00 46.17 0.98
633 634 6.663093 TGGTAACATGGAGCACTTCATTTATT 59.337 34.615 0.00 0.00 46.17 1.40
634 635 6.186957 TGGTAACATGGAGCACTTCATTTAT 58.813 36.000 0.00 0.00 46.17 1.40
635 636 5.565509 TGGTAACATGGAGCACTTCATTTA 58.434 37.500 0.00 0.00 46.17 1.40
636 637 4.406456 TGGTAACATGGAGCACTTCATTT 58.594 39.130 0.00 0.00 46.17 2.32
637 638 4.032960 TGGTAACATGGAGCACTTCATT 57.967 40.909 0.00 0.00 46.17 2.57
638 639 3.719268 TGGTAACATGGAGCACTTCAT 57.281 42.857 0.00 0.00 46.17 2.57
652 653 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
653 654 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
654 655 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
655 656 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
656 657 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
657 658 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
658 659 7.924358 TTATAGTGGGGAGTAACATATGTGT 57.076 36.000 9.63 2.63 41.28 3.72
659 660 7.878127 CCTTTATAGTGGGGAGTAACATATGTG 59.122 40.741 9.63 0.00 0.00 3.21
660 661 7.474364 GCCTTTATAGTGGGGAGTAACATATGT 60.474 40.741 1.41 1.41 0.00 2.29
661 662 6.879458 GCCTTTATAGTGGGGAGTAACATATG 59.121 42.308 0.00 0.00 0.00 1.78
662 663 6.012771 GGCCTTTATAGTGGGGAGTAACATAT 60.013 42.308 0.00 0.00 0.00 1.78
663 664 5.308759 GGCCTTTATAGTGGGGAGTAACATA 59.691 44.000 0.00 0.00 0.00 2.29
664 665 4.104261 GGCCTTTATAGTGGGGAGTAACAT 59.896 45.833 0.00 0.00 0.00 2.71
665 666 3.457012 GGCCTTTATAGTGGGGAGTAACA 59.543 47.826 0.00 0.00 0.00 2.41
666 667 3.181447 GGGCCTTTATAGTGGGGAGTAAC 60.181 52.174 0.84 0.00 0.00 2.50
667 668 3.050835 GGGCCTTTATAGTGGGGAGTAA 58.949 50.000 0.84 0.00 0.00 2.24
668 669 2.021837 TGGGCCTTTATAGTGGGGAGTA 60.022 50.000 4.53 0.00 0.00 2.59
669 670 1.274767 TGGGCCTTTATAGTGGGGAGT 60.275 52.381 4.53 0.00 0.00 3.85
670 671 1.518367 TGGGCCTTTATAGTGGGGAG 58.482 55.000 4.53 0.00 0.00 4.30
671 672 1.780309 CATGGGCCTTTATAGTGGGGA 59.220 52.381 4.53 0.00 0.00 4.81
672 673 1.499007 ACATGGGCCTTTATAGTGGGG 59.501 52.381 4.53 0.00 0.00 4.96
673 674 3.312736 AACATGGGCCTTTATAGTGGG 57.687 47.619 4.53 0.00 0.00 4.61
674 675 5.048846 AGTAACATGGGCCTTTATAGTGG 57.951 43.478 4.53 0.00 0.00 4.00
675 676 6.827727 ACTAGTAACATGGGCCTTTATAGTG 58.172 40.000 4.53 0.00 0.00 2.74
676 677 6.844917 AGACTAGTAACATGGGCCTTTATAGT 59.155 38.462 4.53 4.18 0.00 2.12
677 678 7.304497 AGACTAGTAACATGGGCCTTTATAG 57.696 40.000 4.53 0.88 0.00 1.31
678 679 8.812972 CATAGACTAGTAACATGGGCCTTTATA 58.187 37.037 4.53 0.00 0.00 0.98
679 680 7.292591 ACATAGACTAGTAACATGGGCCTTTAT 59.707 37.037 4.53 0.00 0.00 1.40
680 681 6.614087 ACATAGACTAGTAACATGGGCCTTTA 59.386 38.462 4.53 0.00 0.00 1.85
681 682 5.428783 ACATAGACTAGTAACATGGGCCTTT 59.571 40.000 4.53 0.00 0.00 3.11
682 683 4.969359 ACATAGACTAGTAACATGGGCCTT 59.031 41.667 4.53 0.00 0.00 4.35
683 684 4.557705 ACATAGACTAGTAACATGGGCCT 58.442 43.478 4.53 0.00 0.00 5.19
684 685 4.957684 ACATAGACTAGTAACATGGGCC 57.042 45.455 0.00 0.00 0.00 5.80
685 686 7.052142 AGTAACATAGACTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
694 695 8.861086 CCACAATGGATAGTAACATAGACTAGT 58.139 37.037 0.00 0.00 40.96 2.57
695 696 7.815068 GCCACAATGGATAGTAACATAGACTAG 59.185 40.741 0.00 0.00 40.96 2.57
696 697 7.509318 AGCCACAATGGATAGTAACATAGACTA 59.491 37.037 0.00 0.00 40.96 2.59
697 698 6.327626 AGCCACAATGGATAGTAACATAGACT 59.672 38.462 0.00 0.00 40.96 3.24
698 699 6.525629 AGCCACAATGGATAGTAACATAGAC 58.474 40.000 0.00 0.00 40.96 2.59
699 700 6.747414 AGCCACAATGGATAGTAACATAGA 57.253 37.500 0.00 0.00 40.96 1.98
709 710 5.221722 GGAATGAGACTAGCCACAATGGATA 60.222 44.000 0.00 0.00 40.96 2.59
710 711 4.445448 GGAATGAGACTAGCCACAATGGAT 60.445 45.833 0.00 0.00 40.96 3.41
711 712 3.118261 GGAATGAGACTAGCCACAATGGA 60.118 47.826 0.00 0.00 40.96 3.41
712 713 3.209410 GGAATGAGACTAGCCACAATGG 58.791 50.000 0.00 0.00 41.55 3.16
713 714 3.877559 TGGAATGAGACTAGCCACAATG 58.122 45.455 0.00 0.00 0.00 2.82
714 715 4.574674 TTGGAATGAGACTAGCCACAAT 57.425 40.909 0.00 0.00 0.00 2.71
715 716 4.517285 GATTGGAATGAGACTAGCCACAA 58.483 43.478 0.00 0.00 0.00 3.33
716 717 3.118261 GGATTGGAATGAGACTAGCCACA 60.118 47.826 0.00 0.00 0.00 4.17
717 718 3.118261 TGGATTGGAATGAGACTAGCCAC 60.118 47.826 0.00 0.00 0.00 5.01
718 719 3.114606 TGGATTGGAATGAGACTAGCCA 58.885 45.455 0.00 0.00 0.00 4.75
719 720 3.471680 GTGGATTGGAATGAGACTAGCC 58.528 50.000 0.00 0.00 0.00 3.93
720 721 3.471680 GGTGGATTGGAATGAGACTAGC 58.528 50.000 0.00 0.00 0.00 3.42
721 722 3.722147 CGGTGGATTGGAATGAGACTAG 58.278 50.000 0.00 0.00 0.00 2.57
722 723 2.158957 GCGGTGGATTGGAATGAGACTA 60.159 50.000 0.00 0.00 0.00 2.59
723 724 1.407437 GCGGTGGATTGGAATGAGACT 60.407 52.381 0.00 0.00 0.00 3.24
724 725 1.017387 GCGGTGGATTGGAATGAGAC 58.983 55.000 0.00 0.00 0.00 3.36
725 726 0.617935 TGCGGTGGATTGGAATGAGA 59.382 50.000 0.00 0.00 0.00 3.27
887 909 5.065602 TCGTCTACGCTGCTTCTTAATCTTA 59.934 40.000 0.00 0.00 39.60 2.10
888 910 4.106197 CGTCTACGCTGCTTCTTAATCTT 58.894 43.478 0.00 0.00 0.00 2.40
889 911 3.377485 TCGTCTACGCTGCTTCTTAATCT 59.623 43.478 0.00 0.00 39.60 2.40
890 912 3.692576 TCGTCTACGCTGCTTCTTAATC 58.307 45.455 0.00 0.00 39.60 1.75
891 913 3.777465 TCGTCTACGCTGCTTCTTAAT 57.223 42.857 0.00 0.00 39.60 1.40
892 914 3.435566 CATCGTCTACGCTGCTTCTTAA 58.564 45.455 0.00 0.00 39.60 1.85
1165 1310 1.065926 GGTACCGGTAAAGGTTCCCAG 60.066 57.143 17.78 0.00 43.44 4.45
1174 1319 0.985760 ATGGTGCTGGTACCGGTAAA 59.014 50.000 21.95 9.97 43.87 2.01
1338 1518 1.264749 TAAGGAGCATGGGCACGAGT 61.265 55.000 0.00 0.00 44.61 4.18
1342 1529 1.035139 CCATTAAGGAGCATGGGCAC 58.965 55.000 0.00 0.00 44.61 5.01
1580 1789 2.899256 ACCCCCAATTGTCAACTCATTG 59.101 45.455 4.43 0.00 37.14 2.82
1599 1808 1.066858 TGCGTTCTCATCCTCTTCACC 60.067 52.381 0.00 0.00 0.00 4.02
1601 1810 1.066858 GGTGCGTTCTCATCCTCTTCA 60.067 52.381 0.00 0.00 0.00 3.02
1690 1899 7.336679 CCATATCTTTATTAATGATGCGGGACA 59.663 37.037 12.66 0.00 0.00 4.02
1713 1922 2.582436 CGTCCAACTACCGCCCAT 59.418 61.111 0.00 0.00 0.00 4.00
1752 1961 2.125512 GCGCATCCTCTCGGTGTT 60.126 61.111 0.30 0.00 0.00 3.32
1786 1995 2.433664 AACGCGTCGACCCATTCC 60.434 61.111 14.44 0.00 0.00 3.01
1845 2054 1.351707 CGGCGACCCATTTCATTCG 59.648 57.895 0.00 0.00 34.56 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.