Multiple sequence alignment - TraesCS2D01G453700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G453700 chr2D 100.000 2638 0 0 1 2638 562448177 562450814 0.000000e+00 4872
1 TraesCS2D01G453700 chr2D 80.340 824 91 39 1081 1885 562735109 562735880 2.290000e-155 558
2 TraesCS2D01G453700 chr2D 83.439 628 60 22 1075 1691 562785592 562786186 6.420000e-151 544
3 TraesCS2D01G453700 chr2D 81.030 738 92 33 1081 1784 562839672 562840395 6.420000e-151 544
4 TraesCS2D01G453700 chr2D 89.848 394 34 3 1077 1465 562807908 562808300 3.920000e-138 501
5 TraesCS2D01G453700 chr2D 88.831 385 43 0 1081 1465 562754098 562754482 8.550000e-130 473
6 TraesCS2D01G453700 chr2B 87.183 1537 128 35 253 1763 672319324 672320817 0.000000e+00 1683
7 TraesCS2D01G453700 chr2B 83.031 937 67 40 1 897 672085981 672086865 0.000000e+00 765
8 TraesCS2D01G453700 chr2B 86.591 619 67 13 1613 2224 672531381 672531990 0.000000e+00 669
9 TraesCS2D01G453700 chr2B 80.932 708 85 30 1075 1756 672646570 672647253 5.030000e-142 514
10 TraesCS2D01G453700 chr2B 90.336 238 20 2 2401 2638 672336685 672336919 2.550000e-80 309
11 TraesCS2D01G453700 chr2B 81.606 386 43 13 1849 2225 672322814 672323180 7.140000e-76 294
12 TraesCS2D01G453700 chr2B 83.158 285 25 7 1510 1779 672107042 672107318 3.390000e-59 239
13 TraesCS2D01G453700 chr2B 90.123 162 7 4 39 194 672319153 672319311 4.450000e-48 202
14 TraesCS2D01G453700 chr2B 92.254 142 10 1 1703 1844 672321000 672321140 1.600000e-47 200
15 TraesCS2D01G453700 chr2A 87.138 933 53 30 1029 1919 703105740 703106647 0.000000e+00 996
16 TraesCS2D01G453700 chr2A 82.002 839 90 42 1075 1885 703291232 703292037 0.000000e+00 656
17 TraesCS2D01G453700 chr2A 89.331 478 32 6 405 882 703105067 703105525 1.360000e-162 582
18 TraesCS2D01G453700 chr2A 83.650 263 36 4 1967 2225 703106977 703107236 9.440000e-60 241
19 TraesCS2D01G453700 chr2A 87.097 155 19 1 2224 2378 703107271 703107424 9.710000e-40 174
20 TraesCS2D01G453700 chr2A 76.302 384 30 18 1 361 703104715 703105060 5.880000e-32 148
21 TraesCS2D01G453700 chr2A 83.688 141 6 9 896 1028 703105576 703105707 1.660000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G453700 chr2D 562448177 562450814 2637 False 4872.000000 4872 100.000000 1 2638 1 chr2D.!!$F1 2637
1 TraesCS2D01G453700 chr2D 562735109 562735880 771 False 558.000000 558 80.340000 1081 1885 1 chr2D.!!$F2 804
2 TraesCS2D01G453700 chr2D 562785592 562786186 594 False 544.000000 544 83.439000 1075 1691 1 chr2D.!!$F4 616
3 TraesCS2D01G453700 chr2D 562839672 562840395 723 False 544.000000 544 81.030000 1081 1784 1 chr2D.!!$F6 703
4 TraesCS2D01G453700 chr2B 672085981 672086865 884 False 765.000000 765 83.031000 1 897 1 chr2B.!!$F1 896
5 TraesCS2D01G453700 chr2B 672531381 672531990 609 False 669.000000 669 86.591000 1613 2224 1 chr2B.!!$F4 611
6 TraesCS2D01G453700 chr2B 672319153 672323180 4027 False 594.750000 1683 87.791500 39 2225 4 chr2B.!!$F6 2186
7 TraesCS2D01G453700 chr2B 672646570 672647253 683 False 514.000000 514 80.932000 1075 1756 1 chr2B.!!$F5 681
8 TraesCS2D01G453700 chr2A 703291232 703292037 805 False 656.000000 656 82.002000 1075 1885 1 chr2A.!!$F1 810
9 TraesCS2D01G453700 chr2A 703104715 703107424 2709 False 376.333333 996 84.534333 1 2378 6 chr2A.!!$F2 2377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 455 0.108329 GTGCTACCAGGTGCGTGTAT 60.108 55.0 0.76 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 4581 0.032017 AGGTGTTCCTCGGCCTATCT 60.032 55.0 0.0 0.0 40.58 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 162 3.206150 GGATCTCAAGTGTTGTGTGTGT 58.794 45.455 0.00 0.00 0.00 3.72
133 163 3.002656 GGATCTCAAGTGTTGTGTGTGTG 59.997 47.826 0.00 0.00 0.00 3.82
147 177 0.250793 TGTGTGACAAGGTGGTTCGT 59.749 50.000 0.00 0.00 0.00 3.85
171 209 5.679734 TTGATTGAGCAGACAAGAACTTC 57.320 39.130 0.00 0.00 33.22 3.01
191 229 3.064324 GCGTGCCAAGCTCCCAAT 61.064 61.111 0.00 0.00 0.00 3.16
192 230 2.879907 CGTGCCAAGCTCCCAATG 59.120 61.111 0.00 0.00 0.00 2.82
193 231 1.973281 CGTGCCAAGCTCCCAATGT 60.973 57.895 0.00 0.00 0.00 2.71
194 232 1.885871 GTGCCAAGCTCCCAATGTC 59.114 57.895 0.00 0.00 0.00 3.06
195 233 0.610232 GTGCCAAGCTCCCAATGTCT 60.610 55.000 0.00 0.00 0.00 3.41
196 234 0.112995 TGCCAAGCTCCCAATGTCTT 59.887 50.000 0.00 0.00 0.00 3.01
197 235 0.529378 GCCAAGCTCCCAATGTCTTG 59.471 55.000 0.00 0.00 36.57 3.02
228 266 1.899814 CCCAGTGTCTTGGCTACTGTA 59.100 52.381 0.00 0.00 40.04 2.74
315 354 1.899534 CCGGCGGGTGAAAAGGAAA 60.900 57.895 20.56 0.00 0.00 3.13
316 355 1.284715 CGGCGGGTGAAAAGGAAAC 59.715 57.895 0.00 0.00 0.00 2.78
323 362 1.611491 GGTGAAAAGGAAACGGCATCA 59.389 47.619 0.00 0.00 0.00 3.07
346 397 8.757164 TCAAACTCTTTTCTGGTTTTCTTTTC 57.243 30.769 0.00 0.00 31.87 2.29
370 421 8.865590 TCGTTTTATTTCTTTTCTGAAAAGGG 57.134 30.769 31.56 16.21 46.11 3.95
382 433 4.191544 TCTGAAAAGGGCACGAATCATAG 58.808 43.478 0.00 0.00 0.00 2.23
387 438 3.735237 AGGGCACGAATCATAGTAGTG 57.265 47.619 0.00 0.00 36.05 2.74
403 454 1.183030 AGTGCTACCAGGTGCGTGTA 61.183 55.000 0.76 0.00 0.00 2.90
404 455 0.108329 GTGCTACCAGGTGCGTGTAT 60.108 55.000 0.76 0.00 0.00 2.29
405 456 0.108377 TGCTACCAGGTGCGTGTATG 60.108 55.000 0.76 0.00 0.00 2.39
406 457 0.108329 GCTACCAGGTGCGTGTATGT 60.108 55.000 0.76 0.00 0.00 2.29
418 469 2.159585 GCGTGTATGTGCATTTGCTGTA 60.160 45.455 3.94 0.00 42.66 2.74
467 518 2.430921 GTGTCTCCGTGCCTGTCG 60.431 66.667 0.00 0.00 0.00 4.35
540 621 8.895737 AGACGTTCAAGTTACTTTAATCCAAAA 58.104 29.630 0.00 0.00 0.00 2.44
586 667 2.669569 CCCGACAAGTGGCACAGG 60.670 66.667 21.41 13.50 41.80 4.00
587 668 2.669569 CCGACAAGTGGCACAGGG 60.670 66.667 21.41 10.86 41.80 4.45
588 669 2.425592 CGACAAGTGGCACAGGGA 59.574 61.111 21.41 0.00 41.80 4.20
589 670 1.003355 CGACAAGTGGCACAGGGAT 60.003 57.895 21.41 0.00 41.80 3.85
590 671 0.249120 CGACAAGTGGCACAGGGATA 59.751 55.000 21.41 0.00 41.80 2.59
591 672 1.739067 GACAAGTGGCACAGGGATAC 58.261 55.000 21.41 0.66 41.80 2.24
592 673 1.003118 GACAAGTGGCACAGGGATACA 59.997 52.381 21.41 0.00 41.80 2.29
593 674 1.635487 ACAAGTGGCACAGGGATACAT 59.365 47.619 21.41 0.00 41.80 2.29
602 683 2.557920 CAGGGATACATGGAGGCTTC 57.442 55.000 0.00 0.00 46.79 3.86
698 779 5.678483 GCAATTGCTCGTAGTATTTCATGTG 59.322 40.000 23.21 0.00 38.21 3.21
699 780 6.675486 GCAATTGCTCGTAGTATTTCATGTGT 60.675 38.462 23.21 0.00 38.21 3.72
744 826 0.891373 AGGTCGACATGGACACTCTG 59.109 55.000 18.91 0.00 38.70 3.35
752 834 0.529833 ATGGACACTCTGCAGAGACG 59.470 55.000 42.76 33.48 44.74 4.18
760 842 2.673341 TGCAGAGACGCCTCGAGT 60.673 61.111 12.31 0.00 44.08 4.18
1025 1150 3.717294 CACCCACCTCTTCCCCCG 61.717 72.222 0.00 0.00 0.00 5.73
1042 1200 2.753029 GCCCTCTGGAGCACAAGT 59.247 61.111 0.00 0.00 0.00 3.16
1043 1201 1.376553 GCCCTCTGGAGCACAAGTC 60.377 63.158 0.00 0.00 0.00 3.01
1050 1208 0.898326 TGGAGCACAAGTCCGAGCTA 60.898 55.000 0.00 0.00 37.48 3.32
1063 1221 1.000717 CCGAGCTAGCTAGAAGAAGCC 60.001 57.143 25.15 5.38 43.86 4.35
1066 1224 2.296190 GAGCTAGCTAGAAGAAGCCTCC 59.704 54.545 25.15 2.33 43.86 4.30
1067 1225 1.000717 GCTAGCTAGAAGAAGCCTCCG 60.001 57.143 25.15 0.00 43.86 4.63
1070 1228 1.107945 GCTAGAAGAAGCCTCCGTCT 58.892 55.000 0.00 0.00 36.45 4.18
1074 1232 0.608640 GAAGAAGCCTCCGTCTCCAA 59.391 55.000 0.00 0.00 0.00 3.53
1075 1233 0.321996 AAGAAGCCTCCGTCTCCAAC 59.678 55.000 0.00 0.00 0.00 3.77
1272 1440 2.182791 CAGATGCACCTCGACGCT 59.817 61.111 0.00 0.00 0.00 5.07
1408 1579 4.461081 CCGGAAAGTATTGTTTGGATCCAA 59.539 41.667 23.63 23.63 0.00 3.53
1411 1582 7.096551 CGGAAAGTATTGTTTGGATCCAAAAT 58.903 34.615 35.70 28.24 45.86 1.82
1417 1588 8.917088 AGTATTGTTTGGATCCAAAATATCTGG 58.083 33.333 35.70 0.00 45.86 3.86
1476 1660 0.250513 GATGTCTCTTGGGAGGCGTT 59.749 55.000 0.00 0.00 46.33 4.84
1477 1661 0.036010 ATGTCTCTTGGGAGGCGTTG 60.036 55.000 0.00 0.00 46.33 4.10
1478 1662 1.371558 GTCTCTTGGGAGGCGTTGT 59.628 57.895 0.00 0.00 39.86 3.32
1578 1816 2.125106 GGTGCCTGTAGCTTCCCG 60.125 66.667 0.00 0.00 44.23 5.14
1636 1885 6.657541 GGATGGGAGTAAATTGTACTTGTTCA 59.342 38.462 0.00 0.00 0.00 3.18
1637 1886 7.148239 GGATGGGAGTAAATTGTACTTGTTCAG 60.148 40.741 0.00 0.00 0.00 3.02
1638 1887 6.597562 TGGGAGTAAATTGTACTTGTTCAGT 58.402 36.000 0.00 0.00 39.87 3.41
1639 1888 7.057894 TGGGAGTAAATTGTACTTGTTCAGTT 58.942 34.615 0.00 0.00 36.88 3.16
1640 1889 7.012894 TGGGAGTAAATTGTACTTGTTCAGTTG 59.987 37.037 0.00 0.00 36.88 3.16
1641 1890 7.012989 GGGAGTAAATTGTACTTGTTCAGTTGT 59.987 37.037 0.00 0.00 36.88 3.32
1642 1891 8.403236 GGAGTAAATTGTACTTGTTCAGTTGTT 58.597 33.333 0.00 0.00 36.88 2.83
1643 1892 9.434559 GAGTAAATTGTACTTGTTCAGTTGTTC 57.565 33.333 0.00 0.00 36.88 3.18
1657 1906 2.095161 AGTTGTTCTCGGTCGATCTGTC 60.095 50.000 0.00 0.00 0.00 3.51
1886 4056 5.375417 CTGTAAACAGTTCATGGCAATGA 57.625 39.130 0.00 0.00 38.53 2.57
1887 4057 5.771469 CTGTAAACAGTTCATGGCAATGAA 58.229 37.500 12.71 12.71 41.17 2.57
1900 4070 7.725251 TCATGGCAATGAAAAAGAACTAACTT 58.275 30.769 0.00 0.00 39.92 2.66
1924 4383 2.290071 ACCGGTCAACCCAAACAGATAG 60.290 50.000 0.00 0.00 0.00 2.08
1934 4393 6.764308 ACCCAAACAGATAGATGATTTGTG 57.236 37.500 0.00 0.00 33.29 3.33
1935 4394 6.248433 ACCCAAACAGATAGATGATTTGTGT 58.752 36.000 0.00 0.00 33.29 3.72
1936 4395 6.721208 ACCCAAACAGATAGATGATTTGTGTT 59.279 34.615 0.00 0.00 33.29 3.32
1975 4435 1.590698 GCCAAACAAAAATTGCGACGT 59.409 42.857 0.00 0.00 0.00 4.34
1982 4442 1.787057 AAAATTGCGACGTTGGCGGA 61.787 50.000 4.64 0.00 43.45 5.54
1983 4443 1.787057 AAATTGCGACGTTGGCGGAA 61.787 50.000 0.53 0.53 42.92 4.30
1984 4444 2.182614 AATTGCGACGTTGGCGGAAG 62.183 55.000 5.08 0.00 42.08 3.46
1985 4445 3.793775 TTGCGACGTTGGCGGAAGA 62.794 57.895 4.64 0.00 43.45 2.87
1986 4446 3.479269 GCGACGTTGGCGGAAGAG 61.479 66.667 4.64 0.00 43.45 2.85
1987 4447 2.257371 CGACGTTGGCGGAAGAGA 59.743 61.111 0.00 0.00 43.45 3.10
1988 4448 1.153823 CGACGTTGGCGGAAGAGAT 60.154 57.895 0.00 0.00 43.45 2.75
1989 4449 1.413767 CGACGTTGGCGGAAGAGATG 61.414 60.000 0.00 0.00 43.45 2.90
1994 4454 1.552799 TTGGCGGAAGAGATGAGGCA 61.553 55.000 0.00 0.00 35.59 4.75
2002 4478 3.118112 GGAAGAGATGAGGCAATGGAGAA 60.118 47.826 0.00 0.00 0.00 2.87
2004 4480 2.842496 AGAGATGAGGCAATGGAGAACA 59.158 45.455 0.00 0.00 0.00 3.18
2030 4506 4.162690 ACGGGGATGCCGAAGAGC 62.163 66.667 0.00 0.00 34.52 4.09
2034 4510 3.267860 GGATGCCGAAGAGCGCAG 61.268 66.667 11.47 0.00 39.11 5.18
2056 4532 2.458610 CGATGGAGGACGACGACGA 61.459 63.158 15.32 0.00 42.66 4.20
2066 4542 2.372690 CGACGACGAGCAAAGGTGG 61.373 63.158 0.00 0.00 42.66 4.61
2073 4549 0.036010 CGAGCAAAGGTGGTGGAGAT 60.036 55.000 0.00 0.00 35.00 2.75
2077 4557 1.819305 GCAAAGGTGGTGGAGATGTGT 60.819 52.381 0.00 0.00 0.00 3.72
2091 4577 0.602638 ATGTGTGTGACGGTCGCAAT 60.603 50.000 24.44 12.86 38.76 3.56
2095 4581 3.047280 GTGACGGTCGCAATGGCA 61.047 61.111 16.35 0.00 41.24 4.92
2098 4584 1.815421 GACGGTCGCAATGGCAGAT 60.815 57.895 0.00 0.00 41.24 2.90
2136 4622 2.689785 CGATGGCGGCAAGAGCAAA 61.690 57.895 18.31 0.00 44.61 3.68
2145 4631 2.282462 AAGAGCAAAGTGGCCGGG 60.282 61.111 2.18 0.00 0.00 5.73
2169 4655 1.677552 GGGGCGTGAGAGGAGAAAA 59.322 57.895 0.00 0.00 0.00 2.29
2208 4694 4.080807 TGAGAAACCGCCAAATGGACTATA 60.081 41.667 2.98 0.00 37.39 1.31
2225 4711 5.401531 ACTATATGTGTTGTCGAAGTGGT 57.598 39.130 0.00 0.00 0.00 4.16
2240 4762 1.462432 TGGTGACACTAAGGGCCCA 60.462 57.895 27.56 2.12 33.40 5.36
2254 4776 1.119684 GGCCCACCACTTTTGTTTCT 58.880 50.000 0.00 0.00 35.26 2.52
2255 4777 1.202521 GGCCCACCACTTTTGTTTCTG 60.203 52.381 0.00 0.00 35.26 3.02
2291 4813 5.385509 AAATAACATCCAAACAAGGACGG 57.614 39.130 0.00 0.00 41.30 4.79
2293 4815 2.649531 ACATCCAAACAAGGACGGAA 57.350 45.000 0.00 0.00 41.30 4.30
2294 4816 2.938838 ACATCCAAACAAGGACGGAAA 58.061 42.857 0.00 0.00 41.30 3.13
2297 4819 3.007473 TCCAAACAAGGACGGAAAAGT 57.993 42.857 0.00 0.00 31.23 2.66
2300 4822 3.862845 CCAAACAAGGACGGAAAAGTTTG 59.137 43.478 14.20 14.20 43.08 2.93
2314 4836 8.565416 ACGGAAAAGTTTGAATCTTTTACTAGG 58.435 33.333 17.11 8.11 42.63 3.02
2330 4852 9.815936 CTTTTACTAGGTTTAAAATACACACCG 57.184 33.333 0.00 0.00 30.07 4.94
2337 4859 5.519206 GGTTTAAAATACACACCGTTGCAAA 59.481 36.000 0.00 0.00 0.00 3.68
2338 4860 6.291902 GGTTTAAAATACACACCGTTGCAAAG 60.292 38.462 0.00 2.09 0.00 2.77
2355 4877 4.922692 TGCAAAGTTCATGCTTAAATTCGG 59.077 37.500 1.49 0.00 44.14 4.30
2370 4892 4.400529 AATTCGGCCACTTTTTGAGTTT 57.599 36.364 2.24 0.00 36.10 2.66
2378 4900 6.220201 GGCCACTTTTTGAGTTTATTTGCTA 58.780 36.000 0.00 0.00 36.10 3.49
2379 4901 6.873605 GGCCACTTTTTGAGTTTATTTGCTAT 59.126 34.615 0.00 0.00 36.10 2.97
2380 4902 7.387673 GGCCACTTTTTGAGTTTATTTGCTATT 59.612 33.333 0.00 0.00 36.10 1.73
2381 4903 8.773645 GCCACTTTTTGAGTTTATTTGCTATTT 58.226 29.630 0.00 0.00 36.10 1.40
2389 4911 9.539825 TTGAGTTTATTTGCTATTTTCAAAGCA 57.460 25.926 0.00 0.00 46.59 3.91
2399 4921 8.845413 TGCTATTTTCAAAGCATTAACCAATT 57.155 26.923 0.00 0.00 43.56 2.32
2400 4922 9.282569 TGCTATTTTCAAAGCATTAACCAATTT 57.717 25.926 0.00 0.00 43.56 1.82
2407 4929 8.954950 TCAAAGCATTAACCAATTTTTCTTCA 57.045 26.923 0.00 0.00 0.00 3.02
2408 4930 9.558396 TCAAAGCATTAACCAATTTTTCTTCAT 57.442 25.926 0.00 0.00 0.00 2.57
2409 4931 9.601971 CAAAGCATTAACCAATTTTTCTTCATG 57.398 29.630 0.00 0.00 0.00 3.07
2410 4932 9.558396 AAAGCATTAACCAATTTTTCTTCATGA 57.442 25.926 0.00 0.00 0.00 3.07
2411 4933 9.729281 AAGCATTAACCAATTTTTCTTCATGAT 57.271 25.926 0.00 0.00 0.00 2.45
2417 4939 7.781324 ACCAATTTTTCTTCATGATAGTGGT 57.219 32.000 0.00 3.55 30.23 4.16
2418 4940 7.605449 ACCAATTTTTCTTCATGATAGTGGTG 58.395 34.615 0.00 0.00 32.28 4.17
2419 4941 7.451255 ACCAATTTTTCTTCATGATAGTGGTGA 59.549 33.333 0.00 0.00 32.28 4.02
2420 4942 8.306038 CCAATTTTTCTTCATGATAGTGGTGAA 58.694 33.333 0.00 0.00 0.00 3.18
2421 4943 9.865321 CAATTTTTCTTCATGATAGTGGTGAAT 57.135 29.630 0.00 0.00 32.05 2.57
2422 4944 9.865321 AATTTTTCTTCATGATAGTGGTGAATG 57.135 29.630 0.00 0.00 32.05 2.67
2423 4945 6.441093 TTTCTTCATGATAGTGGTGAATGC 57.559 37.500 0.00 0.00 32.05 3.56
2424 4946 4.454678 TCTTCATGATAGTGGTGAATGCC 58.545 43.478 0.00 0.00 32.05 4.40
2425 4947 4.164796 TCTTCATGATAGTGGTGAATGCCT 59.835 41.667 0.00 0.00 32.05 4.75
2426 4948 4.077300 TCATGATAGTGGTGAATGCCTC 57.923 45.455 0.00 0.00 0.00 4.70
2427 4949 3.713248 TCATGATAGTGGTGAATGCCTCT 59.287 43.478 0.00 0.00 36.47 3.69
2428 4950 3.548745 TGATAGTGGTGAATGCCTCTG 57.451 47.619 0.00 0.00 34.58 3.35
2429 4951 2.171237 TGATAGTGGTGAATGCCTCTGG 59.829 50.000 0.00 0.00 34.58 3.86
2430 4952 1.951209 TAGTGGTGAATGCCTCTGGA 58.049 50.000 0.00 0.00 34.58 3.86
2431 4953 0.326264 AGTGGTGAATGCCTCTGGAC 59.674 55.000 0.00 0.00 31.85 4.02
2432 4954 1.021390 GTGGTGAATGCCTCTGGACG 61.021 60.000 0.00 0.00 0.00 4.79
2433 4955 1.450312 GGTGAATGCCTCTGGACGG 60.450 63.158 0.00 0.00 0.00 4.79
2434 4956 1.296715 GTGAATGCCTCTGGACGGT 59.703 57.895 0.00 0.00 0.00 4.83
2435 4957 0.535335 GTGAATGCCTCTGGACGGTA 59.465 55.000 0.00 0.00 0.00 4.02
2436 4958 1.066430 GTGAATGCCTCTGGACGGTAA 60.066 52.381 0.00 0.00 0.00 2.85
2437 4959 1.066430 TGAATGCCTCTGGACGGTAAC 60.066 52.381 0.00 0.00 0.00 2.50
2438 4960 0.252197 AATGCCTCTGGACGGTAACC 59.748 55.000 0.00 0.00 0.00 2.85
2439 4961 0.617820 ATGCCTCTGGACGGTAACCT 60.618 55.000 0.00 0.00 0.00 3.50
2440 4962 0.834687 TGCCTCTGGACGGTAACCTT 60.835 55.000 0.00 0.00 0.00 3.50
2441 4963 0.108281 GCCTCTGGACGGTAACCTTC 60.108 60.000 0.00 0.00 0.00 3.46
2442 4964 1.558233 CCTCTGGACGGTAACCTTCT 58.442 55.000 0.00 0.00 0.00 2.85
2443 4965 1.900486 CCTCTGGACGGTAACCTTCTT 59.100 52.381 0.00 0.00 0.00 2.52
2444 4966 2.353803 CCTCTGGACGGTAACCTTCTTG 60.354 54.545 0.00 0.00 0.00 3.02
2445 4967 2.299297 CTCTGGACGGTAACCTTCTTGT 59.701 50.000 0.00 0.00 0.00 3.16
2446 4968 2.036733 TCTGGACGGTAACCTTCTTGTG 59.963 50.000 0.00 0.00 0.00 3.33
2447 4969 1.764134 TGGACGGTAACCTTCTTGTGT 59.236 47.619 0.00 0.00 0.00 3.72
2448 4970 2.171027 TGGACGGTAACCTTCTTGTGTT 59.829 45.455 0.00 0.00 0.00 3.32
2449 4971 2.804527 GGACGGTAACCTTCTTGTGTTC 59.195 50.000 0.00 0.00 0.00 3.18
2450 4972 3.460103 GACGGTAACCTTCTTGTGTTCA 58.540 45.455 0.00 0.00 0.00 3.18
2451 4973 4.062991 GACGGTAACCTTCTTGTGTTCAT 58.937 43.478 0.00 0.00 0.00 2.57
2452 4974 3.813166 ACGGTAACCTTCTTGTGTTCATG 59.187 43.478 0.00 0.00 0.00 3.07
2453 4975 4.062293 CGGTAACCTTCTTGTGTTCATGA 58.938 43.478 0.00 0.00 0.00 3.07
2454 4976 4.513692 CGGTAACCTTCTTGTGTTCATGAA 59.486 41.667 3.38 3.38 36.66 2.57
2455 4977 5.181245 CGGTAACCTTCTTGTGTTCATGAAT 59.819 40.000 12.12 0.00 37.20 2.57
2456 4978 6.381801 GGTAACCTTCTTGTGTTCATGAATG 58.618 40.000 12.12 0.80 37.20 2.67
2457 4979 5.458041 AACCTTCTTGTGTTCATGAATGG 57.542 39.130 12.12 1.73 37.20 3.16
2458 4980 4.473444 ACCTTCTTGTGTTCATGAATGGT 58.527 39.130 12.12 2.37 37.20 3.55
2459 4981 5.630121 ACCTTCTTGTGTTCATGAATGGTA 58.370 37.500 12.12 0.00 37.41 3.25
2460 4982 6.068010 ACCTTCTTGTGTTCATGAATGGTAA 58.932 36.000 12.12 4.60 37.41 2.85
2461 4983 6.016276 ACCTTCTTGTGTTCATGAATGGTAAC 60.016 38.462 12.12 6.37 37.41 2.50
2462 4984 5.957842 TCTTGTGTTCATGAATGGTAACC 57.042 39.130 12.12 0.00 0.00 2.85
2463 4985 4.764823 TCTTGTGTTCATGAATGGTAACCC 59.235 41.667 12.12 0.00 0.00 4.11
2465 4987 3.823873 TGTGTTCATGAATGGTAACCCAC 59.176 43.478 12.12 12.21 45.65 4.61
2466 4988 3.192633 GTGTTCATGAATGGTAACCCACC 59.807 47.826 12.12 0.00 45.65 4.61
2479 5001 3.426917 CCACCCTGGGCTATGGTT 58.573 61.111 14.08 0.00 32.67 3.67
2480 5002 1.076777 CCACCCTGGGCTATGGTTG 60.077 63.158 14.08 0.96 32.67 3.77
2481 5003 1.570857 CCACCCTGGGCTATGGTTGA 61.571 60.000 14.08 0.00 32.67 3.18
2482 5004 0.107017 CACCCTGGGCTATGGTTGAG 60.107 60.000 14.08 0.00 0.00 3.02
2483 5005 0.253160 ACCCTGGGCTATGGTTGAGA 60.253 55.000 14.08 0.00 0.00 3.27
2484 5006 1.143813 CCCTGGGCTATGGTTGAGAT 58.856 55.000 0.00 0.00 0.00 2.75
2485 5007 1.202855 CCCTGGGCTATGGTTGAGATG 60.203 57.143 0.00 0.00 0.00 2.90
2486 5008 1.202855 CCTGGGCTATGGTTGAGATGG 60.203 57.143 0.00 0.00 0.00 3.51
2487 5009 1.492176 CTGGGCTATGGTTGAGATGGT 59.508 52.381 0.00 0.00 0.00 3.55
2488 5010 1.212688 TGGGCTATGGTTGAGATGGTG 59.787 52.381 0.00 0.00 0.00 4.17
2489 5011 1.477558 GGGCTATGGTTGAGATGGTGG 60.478 57.143 0.00 0.00 0.00 4.61
2490 5012 1.490490 GGCTATGGTTGAGATGGTGGA 59.510 52.381 0.00 0.00 0.00 4.02
2491 5013 2.107204 GGCTATGGTTGAGATGGTGGAT 59.893 50.000 0.00 0.00 0.00 3.41
2492 5014 3.327757 GGCTATGGTTGAGATGGTGGATA 59.672 47.826 0.00 0.00 0.00 2.59
2493 5015 4.018960 GGCTATGGTTGAGATGGTGGATAT 60.019 45.833 0.00 0.00 0.00 1.63
2494 5016 5.515534 GGCTATGGTTGAGATGGTGGATATT 60.516 44.000 0.00 0.00 0.00 1.28
2495 5017 6.006449 GCTATGGTTGAGATGGTGGATATTT 58.994 40.000 0.00 0.00 0.00 1.40
2496 5018 6.491403 GCTATGGTTGAGATGGTGGATATTTT 59.509 38.462 0.00 0.00 0.00 1.82
2497 5019 7.014615 GCTATGGTTGAGATGGTGGATATTTTT 59.985 37.037 0.00 0.00 0.00 1.94
2519 5041 7.466746 TTTTTCCCTTCTTCTATGGTTGATG 57.533 36.000 0.00 0.00 0.00 3.07
2520 5042 4.156455 TCCCTTCTTCTATGGTTGATGC 57.844 45.455 0.00 0.00 0.00 3.91
2521 5043 3.523157 TCCCTTCTTCTATGGTTGATGCA 59.477 43.478 0.00 0.00 0.00 3.96
2522 5044 3.881688 CCCTTCTTCTATGGTTGATGCAG 59.118 47.826 0.00 0.00 0.00 4.41
2523 5045 4.384537 CCCTTCTTCTATGGTTGATGCAGA 60.385 45.833 0.00 0.00 0.00 4.26
2524 5046 4.815308 CCTTCTTCTATGGTTGATGCAGAG 59.185 45.833 0.00 0.00 0.00 3.35
2525 5047 5.396101 CCTTCTTCTATGGTTGATGCAGAGA 60.396 44.000 0.00 0.00 0.00 3.10
2526 5048 5.883685 TCTTCTATGGTTGATGCAGAGAT 57.116 39.130 0.00 0.00 0.00 2.75
2527 5049 5.608449 TCTTCTATGGTTGATGCAGAGATG 58.392 41.667 0.00 0.00 0.00 2.90
2528 5050 5.364735 TCTTCTATGGTTGATGCAGAGATGA 59.635 40.000 0.00 0.00 0.00 2.92
2529 5051 5.619132 TCTATGGTTGATGCAGAGATGAA 57.381 39.130 0.00 0.00 0.00 2.57
2530 5052 5.993055 TCTATGGTTGATGCAGAGATGAAA 58.007 37.500 0.00 0.00 0.00 2.69
2531 5053 6.417258 TCTATGGTTGATGCAGAGATGAAAA 58.583 36.000 0.00 0.00 0.00 2.29
2532 5054 7.058525 TCTATGGTTGATGCAGAGATGAAAAT 58.941 34.615 0.00 0.00 0.00 1.82
2533 5055 8.212995 TCTATGGTTGATGCAGAGATGAAAATA 58.787 33.333 0.00 0.00 0.00 1.40
2534 5056 7.834881 ATGGTTGATGCAGAGATGAAAATAT 57.165 32.000 0.00 0.00 0.00 1.28
2535 5057 7.649533 TGGTTGATGCAGAGATGAAAATATT 57.350 32.000 0.00 0.00 0.00 1.28
2536 5058 7.485810 TGGTTGATGCAGAGATGAAAATATTG 58.514 34.615 0.00 0.00 0.00 1.90
2537 5059 6.420008 GGTTGATGCAGAGATGAAAATATTGC 59.580 38.462 0.00 0.00 0.00 3.56
2538 5060 6.080648 TGATGCAGAGATGAAAATATTGCC 57.919 37.500 0.00 0.00 0.00 4.52
2539 5061 4.924305 TGCAGAGATGAAAATATTGCCC 57.076 40.909 0.00 0.00 0.00 5.36
2540 5062 4.539726 TGCAGAGATGAAAATATTGCCCT 58.460 39.130 0.00 0.00 0.00 5.19
2541 5063 4.581824 TGCAGAGATGAAAATATTGCCCTC 59.418 41.667 0.00 0.00 0.00 4.30
2542 5064 4.826183 GCAGAGATGAAAATATTGCCCTCT 59.174 41.667 0.00 0.00 0.00 3.69
2543 5065 5.301298 GCAGAGATGAAAATATTGCCCTCTT 59.699 40.000 0.00 0.00 0.00 2.85
2544 5066 6.183360 GCAGAGATGAAAATATTGCCCTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
2545 5067 7.632245 GCAGAGATGAAAATATTGCCCTCTTTT 60.632 37.037 0.00 0.00 0.00 2.27
2546 5068 8.906867 CAGAGATGAAAATATTGCCCTCTTTTA 58.093 33.333 0.00 0.00 0.00 1.52
2547 5069 9.129532 AGAGATGAAAATATTGCCCTCTTTTAG 57.870 33.333 0.00 0.00 0.00 1.85
2548 5070 9.125026 GAGATGAAAATATTGCCCTCTTTTAGA 57.875 33.333 0.00 0.00 0.00 2.10
2549 5071 9.652114 AGATGAAAATATTGCCCTCTTTTAGAT 57.348 29.630 0.00 0.00 0.00 1.98
2552 5074 8.477256 TGAAAATATTGCCCTCTTTTAGATTGG 58.523 33.333 0.00 0.00 0.00 3.16
2553 5075 7.978099 AAATATTGCCCTCTTTTAGATTGGT 57.022 32.000 0.00 0.00 0.00 3.67
2554 5076 9.487442 AAAATATTGCCCTCTTTTAGATTGGTA 57.513 29.630 0.00 0.00 0.00 3.25
2555 5077 9.487442 AAATATTGCCCTCTTTTAGATTGGTAA 57.513 29.630 0.00 0.00 29.96 2.85
2556 5078 9.660544 AATATTGCCCTCTTTTAGATTGGTAAT 57.339 29.630 10.94 10.94 36.29 1.89
2558 5080 7.875327 TTGCCCTCTTTTAGATTGGTAATAC 57.125 36.000 0.00 0.00 0.00 1.89
2559 5081 7.208064 TGCCCTCTTTTAGATTGGTAATACT 57.792 36.000 0.00 0.00 0.00 2.12
2560 5082 7.054124 TGCCCTCTTTTAGATTGGTAATACTG 58.946 38.462 0.00 0.00 0.00 2.74
2561 5083 7.092623 TGCCCTCTTTTAGATTGGTAATACTGA 60.093 37.037 0.00 0.00 0.00 3.41
2562 5084 7.773690 GCCCTCTTTTAGATTGGTAATACTGAA 59.226 37.037 0.00 0.00 0.00 3.02
2563 5085 9.331282 CCCTCTTTTAGATTGGTAATACTGAAG 57.669 37.037 0.00 0.00 0.00 3.02
2564 5086 8.831550 CCTCTTTTAGATTGGTAATACTGAAGC 58.168 37.037 0.00 0.00 0.00 3.86
2565 5087 8.732746 TCTTTTAGATTGGTAATACTGAAGCC 57.267 34.615 0.00 0.00 0.00 4.35
2566 5088 8.548877 TCTTTTAGATTGGTAATACTGAAGCCT 58.451 33.333 0.00 0.00 0.00 4.58
2567 5089 9.178758 CTTTTAGATTGGTAATACTGAAGCCTT 57.821 33.333 0.00 0.00 0.00 4.35
2568 5090 8.506168 TTTAGATTGGTAATACTGAAGCCTTG 57.494 34.615 0.00 0.00 0.00 3.61
2569 5091 4.884164 AGATTGGTAATACTGAAGCCTTGC 59.116 41.667 0.00 0.00 0.00 4.01
2570 5092 2.999331 TGGTAATACTGAAGCCTTGCC 58.001 47.619 0.00 0.00 0.00 4.52
2571 5093 2.576191 TGGTAATACTGAAGCCTTGCCT 59.424 45.455 0.00 0.00 0.00 4.75
2572 5094 3.206964 GGTAATACTGAAGCCTTGCCTC 58.793 50.000 0.00 0.00 0.00 4.70
2573 5095 3.370527 GGTAATACTGAAGCCTTGCCTCA 60.371 47.826 0.00 0.00 0.00 3.86
2574 5096 3.659183 AATACTGAAGCCTTGCCTCAT 57.341 42.857 0.00 0.00 28.21 2.90
2575 5097 2.408271 TACTGAAGCCTTGCCTCATG 57.592 50.000 0.00 0.00 28.21 3.07
2576 5098 0.403271 ACTGAAGCCTTGCCTCATGT 59.597 50.000 0.00 0.00 28.21 3.21
2577 5099 0.809385 CTGAAGCCTTGCCTCATGTG 59.191 55.000 0.00 0.00 28.21 3.21
2578 5100 0.401356 TGAAGCCTTGCCTCATGTGA 59.599 50.000 0.00 0.00 0.00 3.58
2579 5101 1.093159 GAAGCCTTGCCTCATGTGAG 58.907 55.000 3.01 3.01 41.71 3.51
2580 5102 0.964358 AAGCCTTGCCTCATGTGAGC 60.964 55.000 4.48 0.00 40.75 4.26
2581 5103 2.413142 GCCTTGCCTCATGTGAGCC 61.413 63.158 4.48 0.00 40.75 4.70
2582 5104 1.751927 CCTTGCCTCATGTGAGCCC 60.752 63.158 4.48 0.00 40.75 5.19
2583 5105 1.302285 CTTGCCTCATGTGAGCCCT 59.698 57.895 4.48 0.00 40.75 5.19
2584 5106 0.747283 CTTGCCTCATGTGAGCCCTC 60.747 60.000 4.48 0.00 40.75 4.30
2585 5107 1.203441 TTGCCTCATGTGAGCCCTCT 61.203 55.000 4.48 0.00 40.75 3.69
2586 5108 1.145819 GCCTCATGTGAGCCCTCTC 59.854 63.158 4.48 0.00 40.75 3.20
2587 5109 1.828768 CCTCATGTGAGCCCTCTCC 59.171 63.158 4.48 0.00 40.75 3.71
2588 5110 0.979709 CCTCATGTGAGCCCTCTCCA 60.980 60.000 4.48 0.00 40.75 3.86
2589 5111 0.907486 CTCATGTGAGCCCTCTCCAA 59.093 55.000 0.00 0.00 38.58 3.53
2590 5112 1.280133 CTCATGTGAGCCCTCTCCAAA 59.720 52.381 0.00 0.00 38.58 3.28
2591 5113 1.280133 TCATGTGAGCCCTCTCCAAAG 59.720 52.381 0.00 0.00 38.58 2.77
2592 5114 1.004044 CATGTGAGCCCTCTCCAAAGT 59.996 52.381 0.00 0.00 38.58 2.66
2593 5115 0.687354 TGTGAGCCCTCTCCAAAGTC 59.313 55.000 0.00 0.00 38.58 3.01
2594 5116 0.390472 GTGAGCCCTCTCCAAAGTCG 60.390 60.000 0.00 0.00 38.58 4.18
2595 5117 1.448717 GAGCCCTCTCCAAAGTCGC 60.449 63.158 0.00 0.00 33.19 5.19
2596 5118 1.893919 GAGCCCTCTCCAAAGTCGCT 61.894 60.000 0.00 0.00 33.19 4.93
2597 5119 0.614979 AGCCCTCTCCAAAGTCGCTA 60.615 55.000 0.00 0.00 0.00 4.26
2598 5120 0.249398 GCCCTCTCCAAAGTCGCTAA 59.751 55.000 0.00 0.00 0.00 3.09
2599 5121 1.338769 GCCCTCTCCAAAGTCGCTAAA 60.339 52.381 0.00 0.00 0.00 1.85
2600 5122 2.347731 CCCTCTCCAAAGTCGCTAAAC 58.652 52.381 0.00 0.00 0.00 2.01
2601 5123 2.347731 CCTCTCCAAAGTCGCTAAACC 58.652 52.381 0.00 0.00 0.00 3.27
2602 5124 2.289444 CCTCTCCAAAGTCGCTAAACCA 60.289 50.000 0.00 0.00 0.00 3.67
2603 5125 3.399330 CTCTCCAAAGTCGCTAAACCAA 58.601 45.455 0.00 0.00 0.00 3.67
2604 5126 3.399330 TCTCCAAAGTCGCTAAACCAAG 58.601 45.455 0.00 0.00 0.00 3.61
2605 5127 2.484264 CTCCAAAGTCGCTAAACCAAGG 59.516 50.000 0.00 0.00 0.00 3.61
2606 5128 2.105134 TCCAAAGTCGCTAAACCAAGGA 59.895 45.455 0.00 0.00 0.00 3.36
2607 5129 2.225727 CCAAAGTCGCTAAACCAAGGAC 59.774 50.000 0.00 0.00 0.00 3.85
2608 5130 3.139077 CAAAGTCGCTAAACCAAGGACT 58.861 45.455 0.00 0.00 39.50 3.85
2609 5131 3.487120 AAGTCGCTAAACCAAGGACTT 57.513 42.857 0.00 0.00 41.65 3.01
2610 5132 3.487120 AGTCGCTAAACCAAGGACTTT 57.513 42.857 0.00 0.00 34.49 2.66
2611 5133 3.816994 AGTCGCTAAACCAAGGACTTTT 58.183 40.909 0.00 0.00 34.49 2.27
2612 5134 3.813724 AGTCGCTAAACCAAGGACTTTTC 59.186 43.478 0.00 0.00 34.49 2.29
2613 5135 3.813724 GTCGCTAAACCAAGGACTTTTCT 59.186 43.478 0.00 0.00 0.00 2.52
2614 5136 3.813166 TCGCTAAACCAAGGACTTTTCTG 59.187 43.478 0.00 0.00 0.00 3.02
2615 5137 3.564225 CGCTAAACCAAGGACTTTTCTGT 59.436 43.478 0.00 0.00 0.00 3.41
2616 5138 4.036380 CGCTAAACCAAGGACTTTTCTGTT 59.964 41.667 0.00 0.00 0.00 3.16
2617 5139 5.449999 CGCTAAACCAAGGACTTTTCTGTTT 60.450 40.000 0.00 0.00 0.00 2.83
2618 5140 6.338146 GCTAAACCAAGGACTTTTCTGTTTT 58.662 36.000 0.00 0.00 0.00 2.43
2619 5141 7.485810 GCTAAACCAAGGACTTTTCTGTTTTA 58.514 34.615 0.00 0.00 0.00 1.52
2620 5142 7.977293 GCTAAACCAAGGACTTTTCTGTTTTAA 59.023 33.333 0.00 0.00 0.00 1.52
2622 5144 8.942338 AAACCAAGGACTTTTCTGTTTTAATC 57.058 30.769 0.00 0.00 0.00 1.75
2623 5145 7.898014 ACCAAGGACTTTTCTGTTTTAATCT 57.102 32.000 0.00 0.00 0.00 2.40
2624 5146 8.306313 ACCAAGGACTTTTCTGTTTTAATCTT 57.694 30.769 0.00 0.00 0.00 2.40
2625 5147 8.758829 ACCAAGGACTTTTCTGTTTTAATCTTT 58.241 29.630 0.00 0.00 0.00 2.52
2626 5148 9.599866 CCAAGGACTTTTCTGTTTTAATCTTTT 57.400 29.630 0.00 0.00 0.00 2.27
2628 5150 9.516314 AAGGACTTTTCTGTTTTAATCTTTTCG 57.484 29.630 0.00 0.00 0.00 3.46
2629 5151 8.683615 AGGACTTTTCTGTTTTAATCTTTTCGT 58.316 29.630 0.00 0.00 0.00 3.85
2630 5152 8.743099 GGACTTTTCTGTTTTAATCTTTTCGTG 58.257 33.333 0.00 0.00 0.00 4.35
2631 5153 9.498307 GACTTTTCTGTTTTAATCTTTTCGTGA 57.502 29.630 0.00 0.00 0.00 4.35
2632 5154 9.503427 ACTTTTCTGTTTTAATCTTTTCGTGAG 57.497 29.630 0.00 0.00 0.00 3.51
2633 5155 9.716507 CTTTTCTGTTTTAATCTTTTCGTGAGA 57.283 29.630 0.00 0.00 39.20 3.27
2635 5157 9.878599 TTTCTGTTTTAATCTTTTCGTGAGATC 57.121 29.630 0.00 0.00 41.60 2.75
2636 5158 8.029642 TCTGTTTTAATCTTTTCGTGAGATCC 57.970 34.615 0.00 0.00 41.60 3.36
2637 5159 7.119262 TCTGTTTTAATCTTTTCGTGAGATCCC 59.881 37.037 0.00 0.00 41.60 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 162 2.712709 TCAAAACGAACCACCTTGTCA 58.287 42.857 0.00 0.00 0.00 3.58
133 163 3.982576 ATCAAAACGAACCACCTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
147 177 6.095300 TGAAGTTCTTGTCTGCTCAATCAAAA 59.905 34.615 4.17 0.00 0.00 2.44
188 226 4.100808 TGGGAAAAGGAAACCAAGACATTG 59.899 41.667 0.00 0.00 36.09 2.82
189 227 4.294347 TGGGAAAAGGAAACCAAGACATT 58.706 39.130 0.00 0.00 0.00 2.71
190 228 3.897505 CTGGGAAAAGGAAACCAAGACAT 59.102 43.478 0.00 0.00 31.63 3.06
191 229 3.295973 CTGGGAAAAGGAAACCAAGACA 58.704 45.455 0.00 0.00 31.63 3.41
192 230 3.068165 CACTGGGAAAAGGAAACCAAGAC 59.932 47.826 0.00 0.00 31.63 3.01
193 231 3.295973 CACTGGGAAAAGGAAACCAAGA 58.704 45.455 0.00 0.00 31.63 3.02
194 232 3.031013 ACACTGGGAAAAGGAAACCAAG 58.969 45.455 0.00 0.00 31.63 3.61
195 233 3.028130 GACACTGGGAAAAGGAAACCAA 58.972 45.455 0.00 0.00 31.63 3.67
196 234 2.243736 AGACACTGGGAAAAGGAAACCA 59.756 45.455 0.00 0.00 0.00 3.67
197 235 2.945456 AGACACTGGGAAAAGGAAACC 58.055 47.619 0.00 0.00 0.00 3.27
198 236 3.068165 CCAAGACACTGGGAAAAGGAAAC 59.932 47.826 0.00 0.00 32.32 2.78
199 237 3.295973 CCAAGACACTGGGAAAAGGAAA 58.704 45.455 0.00 0.00 32.32 3.13
200 238 2.944129 CCAAGACACTGGGAAAAGGAA 58.056 47.619 0.00 0.00 32.32 3.36
201 239 1.478654 GCCAAGACACTGGGAAAAGGA 60.479 52.381 0.00 0.00 36.92 3.36
202 240 0.961753 GCCAAGACACTGGGAAAAGG 59.038 55.000 0.00 0.00 36.92 3.11
203 241 1.986882 AGCCAAGACACTGGGAAAAG 58.013 50.000 0.00 0.00 36.92 2.27
204 242 2.441750 AGTAGCCAAGACACTGGGAAAA 59.558 45.455 0.00 0.00 36.92 2.29
205 243 2.054799 AGTAGCCAAGACACTGGGAAA 58.945 47.619 0.00 0.00 36.92 3.13
206 244 1.347707 CAGTAGCCAAGACACTGGGAA 59.652 52.381 0.00 0.00 36.79 3.97
207 245 0.976641 CAGTAGCCAAGACACTGGGA 59.023 55.000 0.00 0.00 36.79 4.37
208 246 0.687354 ACAGTAGCCAAGACACTGGG 59.313 55.000 5.98 0.00 43.18 4.45
300 339 1.284715 CCGTTTCCTTTTCACCCGC 59.715 57.895 0.00 0.00 0.00 6.13
302 341 0.966179 ATGCCGTTTCCTTTTCACCC 59.034 50.000 0.00 0.00 0.00 4.61
304 343 3.363341 TTGATGCCGTTTCCTTTTCAC 57.637 42.857 0.00 0.00 0.00 3.18
311 350 3.643159 AAAGAGTTTGATGCCGTTTCC 57.357 42.857 0.00 0.00 0.00 3.13
315 354 2.554032 CCAGAAAAGAGTTTGATGCCGT 59.446 45.455 0.00 0.00 0.00 5.68
316 355 2.554032 ACCAGAAAAGAGTTTGATGCCG 59.446 45.455 0.00 0.00 0.00 5.69
323 362 7.375834 ACGAAAAGAAAACCAGAAAAGAGTTT 58.624 30.769 0.00 0.00 35.29 2.66
382 433 0.736325 CACGCACCTGGTAGCACTAC 60.736 60.000 17.31 0.00 35.40 2.73
387 438 0.108329 ACATACACGCACCTGGTAGC 60.108 55.000 0.00 5.09 0.00 3.58
403 454 2.559668 ACAAGCTACAGCAAATGCACAT 59.440 40.909 8.28 0.00 45.16 3.21
404 455 1.955778 ACAAGCTACAGCAAATGCACA 59.044 42.857 8.28 0.00 45.16 4.57
405 456 2.030893 TGACAAGCTACAGCAAATGCAC 60.031 45.455 8.28 0.00 45.16 4.57
406 457 2.228925 TGACAAGCTACAGCAAATGCA 58.771 42.857 8.28 0.00 45.16 3.96
418 469 0.036010 AGCCACGCTAATGACAAGCT 60.036 50.000 0.00 0.00 36.99 3.74
474 525 4.261197 GGTTCCAGCACTAGAACAAACAAG 60.261 45.833 10.42 0.00 43.37 3.16
540 621 3.065095 GGCGTCAAATCTACTCTCGTAGT 59.935 47.826 0.00 0.00 42.95 2.73
545 626 2.541999 CGAGGGCGTCAAATCTACTCTC 60.542 54.545 8.06 0.00 0.00 3.20
586 667 1.871080 CGTGAAGCCTCCATGTATCC 58.129 55.000 0.00 0.00 0.00 2.59
587 668 1.221414 GCGTGAAGCCTCCATGTATC 58.779 55.000 0.00 0.00 40.81 2.24
588 669 3.386543 GCGTGAAGCCTCCATGTAT 57.613 52.632 0.00 0.00 40.81 2.29
589 670 4.932789 GCGTGAAGCCTCCATGTA 57.067 55.556 0.00 0.00 40.81 2.29
694 775 1.964223 AGGCGATCGATTAGGACACAT 59.036 47.619 21.57 0.00 0.00 3.21
698 779 2.510768 AACAGGCGATCGATTAGGAC 57.489 50.000 21.57 0.00 0.00 3.85
699 780 3.536956 AAAACAGGCGATCGATTAGGA 57.463 42.857 21.57 0.00 0.00 2.94
744 826 2.101380 GACTCGAGGCGTCTCTGC 59.899 66.667 18.41 0.00 37.86 4.26
752 834 1.596895 AAACGGAGAGGACTCGAGGC 61.597 60.000 18.41 14.96 43.44 4.70
838 920 0.811616 GTGGTTGGCTCGATGGCTAG 60.812 60.000 9.21 0.00 42.34 3.42
1025 1150 1.376553 GACTTGTGCTCCAGAGGGC 60.377 63.158 0.00 0.00 0.00 5.19
1026 1151 1.298014 GGACTTGTGCTCCAGAGGG 59.702 63.158 0.00 0.00 0.00 4.30
1033 1191 0.804156 GCTAGCTCGGACTTGTGCTC 60.804 60.000 7.70 0.00 39.27 4.26
1037 1195 2.421751 TCTAGCTAGCTCGGACTTGT 57.578 50.000 23.26 0.00 0.00 3.16
1042 1200 1.950909 GCTTCTTCTAGCTAGCTCGGA 59.049 52.381 23.26 17.64 38.15 4.55
1043 1201 1.000717 GGCTTCTTCTAGCTAGCTCGG 60.001 57.143 23.26 15.50 40.99 4.63
1050 1208 1.107945 GACGGAGGCTTCTTCTAGCT 58.892 55.000 0.00 0.00 40.99 3.32
1063 1221 2.963101 TGGTATATGGTTGGAGACGGAG 59.037 50.000 0.00 0.00 0.00 4.63
1066 1224 3.664107 CCATGGTATATGGTTGGAGACG 58.336 50.000 2.57 0.00 34.56 4.18
1067 1225 3.412386 GCCATGGTATATGGTTGGAGAC 58.588 50.000 14.67 0.00 41.17 3.36
1070 1228 1.073125 CCGCCATGGTATATGGTTGGA 59.927 52.381 14.67 0.00 41.17 3.53
1074 1232 0.698238 ATGCCGCCATGGTATATGGT 59.302 50.000 14.67 0.00 41.87 3.55
1075 1233 1.382522 GATGCCGCCATGGTATATGG 58.617 55.000 14.67 8.97 43.96 2.74
1385 1555 4.013728 TGGATCCAAACAATACTTTCCGG 58.986 43.478 13.46 0.00 0.00 5.14
1411 1582 8.868522 ATGTTGTTTTCTTCAGAATCCAGATA 57.131 30.769 0.00 0.00 33.54 1.98
1476 1660 1.683319 CGGAGAGGGAGACATCAGACA 60.683 57.143 0.00 0.00 45.49 3.41
1477 1661 1.028905 CGGAGAGGGAGACATCAGAC 58.971 60.000 0.00 0.00 45.49 3.51
1478 1662 0.106469 CCGGAGAGGGAGACATCAGA 60.106 60.000 0.00 0.00 45.49 3.27
1620 1859 8.332464 CGAGAACAACTGAACAAGTACAATTTA 58.668 33.333 0.00 0.00 38.56 1.40
1636 1885 1.887198 ACAGATCGACCGAGAACAACT 59.113 47.619 0.00 0.00 0.00 3.16
1637 1886 2.251893 GACAGATCGACCGAGAACAAC 58.748 52.381 0.00 0.00 0.00 3.32
1638 1887 1.883926 TGACAGATCGACCGAGAACAA 59.116 47.619 0.00 0.00 0.00 2.83
1639 1888 1.530323 TGACAGATCGACCGAGAACA 58.470 50.000 0.00 0.00 0.00 3.18
1640 1889 2.159366 ACATGACAGATCGACCGAGAAC 60.159 50.000 0.00 0.00 0.00 3.01
1641 1890 2.092323 ACATGACAGATCGACCGAGAA 58.908 47.619 0.00 0.00 0.00 2.87
1642 1891 1.401905 CACATGACAGATCGACCGAGA 59.598 52.381 0.00 0.00 0.00 4.04
1643 1892 1.832600 CACATGACAGATCGACCGAG 58.167 55.000 0.00 0.00 0.00 4.63
1657 1906 8.291740 TCTAATCAAATAATTCATCGGCACATG 58.708 33.333 0.00 0.00 0.00 3.21
1885 4055 6.127810 ACCGGTTGAAGTTAGTTCTTTTTC 57.872 37.500 0.00 0.00 35.99 2.29
1886 4056 5.648960 TGACCGGTTGAAGTTAGTTCTTTTT 59.351 36.000 9.42 0.00 35.99 1.94
1887 4057 5.187687 TGACCGGTTGAAGTTAGTTCTTTT 58.812 37.500 9.42 0.00 35.99 2.27
1888 4058 4.773013 TGACCGGTTGAAGTTAGTTCTTT 58.227 39.130 9.42 0.00 35.99 2.52
1892 4062 3.208594 GGTTGACCGGTTGAAGTTAGTT 58.791 45.455 9.42 0.00 0.00 2.24
1900 4070 0.034380 TGTTTGGGTTGACCGGTTGA 60.034 50.000 9.42 0.00 44.64 3.18
1955 4415 1.590698 ACGTCGCAATTTTTGTTTGGC 59.409 42.857 0.00 0.00 0.00 4.52
1956 4416 3.543070 CCAACGTCGCAATTTTTGTTTGG 60.543 43.478 0.00 0.00 0.00 3.28
1957 4417 3.592309 CCAACGTCGCAATTTTTGTTTG 58.408 40.909 0.00 0.00 0.00 2.93
1958 4418 2.029849 GCCAACGTCGCAATTTTTGTTT 59.970 40.909 2.88 0.00 0.00 2.83
1959 4419 1.590698 GCCAACGTCGCAATTTTTGTT 59.409 42.857 2.88 0.00 0.00 2.83
1960 4420 1.204792 GCCAACGTCGCAATTTTTGT 58.795 45.000 2.88 0.00 0.00 2.83
1961 4421 0.158511 CGCCAACGTCGCAATTTTTG 59.841 50.000 8.16 0.00 33.53 2.44
1962 4422 0.937231 CCGCCAACGTCGCAATTTTT 60.937 50.000 8.16 0.00 37.70 1.94
1965 4425 2.182614 CTTCCGCCAACGTCGCAATT 62.183 55.000 8.16 0.00 37.70 2.32
1975 4435 1.221840 GCCTCATCTCTTCCGCCAA 59.778 57.895 0.00 0.00 0.00 4.52
1982 4442 3.265221 TGTTCTCCATTGCCTCATCTCTT 59.735 43.478 0.00 0.00 0.00 2.85
1983 4443 2.842496 TGTTCTCCATTGCCTCATCTCT 59.158 45.455 0.00 0.00 0.00 3.10
1984 4444 3.204526 CTGTTCTCCATTGCCTCATCTC 58.795 50.000 0.00 0.00 0.00 2.75
1985 4445 2.575279 ACTGTTCTCCATTGCCTCATCT 59.425 45.455 0.00 0.00 0.00 2.90
1986 4446 2.941720 GACTGTTCTCCATTGCCTCATC 59.058 50.000 0.00 0.00 0.00 2.92
1987 4447 2.679059 CGACTGTTCTCCATTGCCTCAT 60.679 50.000 0.00 0.00 0.00 2.90
1988 4448 1.338105 CGACTGTTCTCCATTGCCTCA 60.338 52.381 0.00 0.00 0.00 3.86
1989 4449 1.363744 CGACTGTTCTCCATTGCCTC 58.636 55.000 0.00 0.00 0.00 4.70
1994 4454 1.741770 GCGCCGACTGTTCTCCATT 60.742 57.895 0.00 0.00 0.00 3.16
2026 4502 2.816958 CCATCGTTGCTGCGCTCT 60.817 61.111 9.73 0.00 0.00 4.09
2030 4506 2.125552 TCCTCCATCGTTGCTGCG 60.126 61.111 0.00 0.00 0.00 5.18
2034 4510 2.158959 CGTCGTCCTCCATCGTTGC 61.159 63.158 0.00 0.00 0.00 4.17
2056 4532 0.773644 ACATCTCCACCACCTTTGCT 59.226 50.000 0.00 0.00 0.00 3.91
2066 4542 0.033504 ACCGTCACACACATCTCCAC 59.966 55.000 0.00 0.00 0.00 4.02
2073 4549 1.227409 ATTGCGACCGTCACACACA 60.227 52.632 0.00 0.00 0.00 3.72
2077 4557 3.047280 GCCATTGCGACCGTCACA 61.047 61.111 0.00 0.00 0.00 3.58
2095 4581 0.032017 AGGTGTTCCTCGGCCTATCT 60.032 55.000 0.00 0.00 40.58 1.98
2098 4584 1.550130 CCAAGGTGTTCCTCGGCCTA 61.550 60.000 0.00 0.00 44.35 3.93
2148 4634 3.827898 CTCCTCTCACGCCCCGAC 61.828 72.222 0.00 0.00 0.00 4.79
2150 4636 2.167398 TTTTCTCCTCTCACGCCCCG 62.167 60.000 0.00 0.00 0.00 5.73
2154 4640 0.321996 ACCCTTTTCTCCTCTCACGC 59.678 55.000 0.00 0.00 0.00 5.34
2157 4643 2.304221 TCGACCCTTTTCTCCTCTCA 57.696 50.000 0.00 0.00 0.00 3.27
2169 4655 6.349033 CGGTTTCTCAATTTTAATTCGACCCT 60.349 38.462 0.00 0.00 0.00 4.34
2208 4694 2.210116 GTCACCACTTCGACAACACAT 58.790 47.619 0.00 0.00 32.24 3.21
2225 4711 1.462432 TGGTGGGCCCTTAGTGTCA 60.462 57.895 25.70 7.68 0.00 3.58
2230 4752 1.256812 CAAAAGTGGTGGGCCCTTAG 58.743 55.000 25.70 0.97 0.00 2.18
2232 4754 0.326143 AACAAAAGTGGTGGGCCCTT 60.326 50.000 25.70 5.13 0.00 3.95
2237 4759 1.480137 TGCAGAAACAAAAGTGGTGGG 59.520 47.619 0.00 0.00 0.00 4.61
2240 4762 5.123661 CCAAAAATGCAGAAACAAAAGTGGT 59.876 36.000 0.00 0.00 0.00 4.16
2254 4776 7.500227 TGGATGTTATTTTGAACCAAAAATGCA 59.500 29.630 8.64 6.76 44.68 3.96
2255 4777 7.869800 TGGATGTTATTTTGAACCAAAAATGC 58.130 30.769 8.64 4.68 44.68 3.56
2314 4836 6.253942 ACTTTGCAACGGTGTGTATTTTAAAC 59.746 34.615 0.66 0.00 0.00 2.01
2318 4840 4.379339 ACTTTGCAACGGTGTGTATTTT 57.621 36.364 0.66 0.00 0.00 1.82
2321 4843 2.946329 TGAACTTTGCAACGGTGTGTAT 59.054 40.909 0.66 0.00 0.00 2.29
2330 4852 6.291385 CGAATTTAAGCATGAACTTTGCAAC 58.709 36.000 0.00 0.00 42.62 4.17
2337 4859 3.088532 TGGCCGAATTTAAGCATGAACT 58.911 40.909 0.00 0.00 0.00 3.01
2338 4860 3.119495 AGTGGCCGAATTTAAGCATGAAC 60.119 43.478 0.00 0.00 0.00 3.18
2355 4877 7.889589 ATAGCAAATAAACTCAAAAAGTGGC 57.110 32.000 0.00 0.00 38.58 5.01
2381 4903 9.388506 TGAAGAAAAATTGGTTAATGCTTTGAA 57.611 25.926 0.00 0.00 0.00 2.69
2382 4904 8.954950 TGAAGAAAAATTGGTTAATGCTTTGA 57.045 26.923 0.00 0.00 0.00 2.69
2383 4905 9.601971 CATGAAGAAAAATTGGTTAATGCTTTG 57.398 29.630 0.00 0.00 0.00 2.77
2384 4906 9.558396 TCATGAAGAAAAATTGGTTAATGCTTT 57.442 25.926 0.00 0.00 0.00 3.51
2385 4907 9.729281 ATCATGAAGAAAAATTGGTTAATGCTT 57.271 25.926 0.00 0.00 0.00 3.91
2391 4913 9.308000 ACCACTATCATGAAGAAAAATTGGTTA 57.692 29.630 0.00 0.00 0.00 2.85
2392 4914 8.090214 CACCACTATCATGAAGAAAAATTGGTT 58.910 33.333 0.00 0.00 0.00 3.67
2393 4915 7.451255 TCACCACTATCATGAAGAAAAATTGGT 59.549 33.333 0.00 4.95 0.00 3.67
2394 4916 7.829725 TCACCACTATCATGAAGAAAAATTGG 58.170 34.615 0.00 4.38 0.00 3.16
2395 4917 9.865321 ATTCACCACTATCATGAAGAAAAATTG 57.135 29.630 0.00 0.00 35.89 2.32
2396 4918 9.865321 CATTCACCACTATCATGAAGAAAAATT 57.135 29.630 0.00 0.00 35.89 1.82
2397 4919 7.977853 GCATTCACCACTATCATGAAGAAAAAT 59.022 33.333 0.00 0.00 35.89 1.82
2398 4920 7.315142 GCATTCACCACTATCATGAAGAAAAA 58.685 34.615 0.00 0.00 35.89 1.94
2399 4921 6.127647 GGCATTCACCACTATCATGAAGAAAA 60.128 38.462 0.00 0.00 35.89 2.29
2400 4922 5.357878 GGCATTCACCACTATCATGAAGAAA 59.642 40.000 0.00 0.00 35.89 2.52
2401 4923 4.883585 GGCATTCACCACTATCATGAAGAA 59.116 41.667 0.00 0.00 35.89 2.52
2402 4924 4.164796 AGGCATTCACCACTATCATGAAGA 59.835 41.667 0.00 0.00 35.89 2.87
2403 4925 4.458397 AGGCATTCACCACTATCATGAAG 58.542 43.478 0.00 1.33 35.89 3.02
2404 4926 4.164796 AGAGGCATTCACCACTATCATGAA 59.835 41.667 0.00 0.00 36.81 2.57
2405 4927 3.713248 AGAGGCATTCACCACTATCATGA 59.287 43.478 0.00 0.00 0.00 3.07
2406 4928 3.813724 CAGAGGCATTCACCACTATCATG 59.186 47.826 0.00 0.00 0.00 3.07
2407 4929 3.181447 CCAGAGGCATTCACCACTATCAT 60.181 47.826 0.00 0.00 0.00 2.45
2408 4930 2.171237 CCAGAGGCATTCACCACTATCA 59.829 50.000 0.00 0.00 0.00 2.15
2409 4931 2.435805 TCCAGAGGCATTCACCACTATC 59.564 50.000 0.00 0.00 0.00 2.08
2410 4932 2.171448 GTCCAGAGGCATTCACCACTAT 59.829 50.000 0.00 0.00 0.00 2.12
2411 4933 1.555075 GTCCAGAGGCATTCACCACTA 59.445 52.381 0.00 0.00 0.00 2.74
2412 4934 0.326264 GTCCAGAGGCATTCACCACT 59.674 55.000 0.00 0.00 0.00 4.00
2413 4935 1.021390 CGTCCAGAGGCATTCACCAC 61.021 60.000 0.00 0.00 0.00 4.16
2414 4936 1.296392 CGTCCAGAGGCATTCACCA 59.704 57.895 0.00 0.00 0.00 4.17
2415 4937 1.450312 CCGTCCAGAGGCATTCACC 60.450 63.158 0.00 0.00 0.00 4.02
2416 4938 0.535335 TACCGTCCAGAGGCATTCAC 59.465 55.000 0.00 0.00 0.00 3.18
2417 4939 1.066430 GTTACCGTCCAGAGGCATTCA 60.066 52.381 0.00 0.00 0.00 2.57
2418 4940 1.653151 GTTACCGTCCAGAGGCATTC 58.347 55.000 0.00 0.00 0.00 2.67
2419 4941 0.252197 GGTTACCGTCCAGAGGCATT 59.748 55.000 0.00 0.00 0.00 3.56
2420 4942 0.617820 AGGTTACCGTCCAGAGGCAT 60.618 55.000 0.00 0.00 0.00 4.40
2421 4943 0.834687 AAGGTTACCGTCCAGAGGCA 60.835 55.000 0.00 0.00 0.00 4.75
2422 4944 0.108281 GAAGGTTACCGTCCAGAGGC 60.108 60.000 6.04 0.00 0.00 4.70
2423 4945 1.558233 AGAAGGTTACCGTCCAGAGG 58.442 55.000 13.43 0.00 32.53 3.69
2424 4946 2.299297 ACAAGAAGGTTACCGTCCAGAG 59.701 50.000 13.43 4.44 32.53 3.35
2425 4947 2.036733 CACAAGAAGGTTACCGTCCAGA 59.963 50.000 13.43 0.00 32.53 3.86
2426 4948 2.224209 ACACAAGAAGGTTACCGTCCAG 60.224 50.000 13.43 9.00 32.53 3.86
2427 4949 1.764134 ACACAAGAAGGTTACCGTCCA 59.236 47.619 13.43 0.00 32.53 4.02
2428 4950 2.538512 ACACAAGAAGGTTACCGTCC 57.461 50.000 13.43 0.00 32.53 4.79
2429 4951 3.460103 TGAACACAAGAAGGTTACCGTC 58.540 45.455 9.28 9.28 32.29 4.79
2430 4952 3.547054 TGAACACAAGAAGGTTACCGT 57.453 42.857 0.00 0.00 0.00 4.83
2431 4953 4.062293 TCATGAACACAAGAAGGTTACCG 58.938 43.478 0.00 0.00 0.00 4.02
2432 4954 6.381801 CATTCATGAACACAAGAAGGTTACC 58.618 40.000 11.07 0.00 0.00 2.85
2433 4955 6.016276 ACCATTCATGAACACAAGAAGGTTAC 60.016 38.462 11.07 0.00 28.77 2.50
2434 4956 6.068010 ACCATTCATGAACACAAGAAGGTTA 58.932 36.000 11.07 0.00 28.77 2.85
2435 4957 4.895297 ACCATTCATGAACACAAGAAGGTT 59.105 37.500 11.07 0.00 28.77 3.50
2436 4958 4.473444 ACCATTCATGAACACAAGAAGGT 58.527 39.130 11.07 6.14 0.00 3.50
2437 4959 6.381801 GTTACCATTCATGAACACAAGAAGG 58.618 40.000 11.07 5.55 0.00 3.46
2438 4960 6.381801 GGTTACCATTCATGAACACAAGAAG 58.618 40.000 11.07 0.00 0.00 2.85
2439 4961 5.242838 GGGTTACCATTCATGAACACAAGAA 59.757 40.000 11.07 0.00 36.50 2.52
2440 4962 4.764823 GGGTTACCATTCATGAACACAAGA 59.235 41.667 11.07 0.00 36.50 3.02
2441 4963 4.522405 TGGGTTACCATTCATGAACACAAG 59.478 41.667 11.07 0.56 43.37 3.16
2442 4964 4.474394 TGGGTTACCATTCATGAACACAA 58.526 39.130 11.07 0.01 43.37 3.33
2443 4965 4.105754 TGGGTTACCATTCATGAACACA 57.894 40.909 11.07 1.55 43.37 3.72
2462 4984 1.076777 CAACCATAGCCCAGGGTGG 60.077 63.158 11.52 11.52 41.59 4.61
2463 4985 0.107017 CTCAACCATAGCCCAGGGTG 60.107 60.000 7.55 0.00 41.59 4.61
2464 4986 0.253160 TCTCAACCATAGCCCAGGGT 60.253 55.000 7.55 0.00 45.36 4.34
2465 4987 1.143813 ATCTCAACCATAGCCCAGGG 58.856 55.000 0.00 0.00 0.00 4.45
2466 4988 1.202855 CCATCTCAACCATAGCCCAGG 60.203 57.143 0.00 0.00 0.00 4.45
2467 4989 1.492176 ACCATCTCAACCATAGCCCAG 59.508 52.381 0.00 0.00 0.00 4.45
2468 4990 1.212688 CACCATCTCAACCATAGCCCA 59.787 52.381 0.00 0.00 0.00 5.36
2469 4991 1.477558 CCACCATCTCAACCATAGCCC 60.478 57.143 0.00 0.00 0.00 5.19
2470 4992 1.490490 TCCACCATCTCAACCATAGCC 59.510 52.381 0.00 0.00 0.00 3.93
2471 4993 3.498774 ATCCACCATCTCAACCATAGC 57.501 47.619 0.00 0.00 0.00 2.97
2472 4994 8.469309 AAAAATATCCACCATCTCAACCATAG 57.531 34.615 0.00 0.00 0.00 2.23
2495 5017 6.071391 GCATCAACCATAGAAGAAGGGAAAAA 60.071 38.462 0.00 0.00 0.00 1.94
2496 5018 5.418840 GCATCAACCATAGAAGAAGGGAAAA 59.581 40.000 0.00 0.00 0.00 2.29
2497 5019 4.949856 GCATCAACCATAGAAGAAGGGAAA 59.050 41.667 0.00 0.00 0.00 3.13
2498 5020 4.018506 TGCATCAACCATAGAAGAAGGGAA 60.019 41.667 0.00 0.00 0.00 3.97
2499 5021 3.523157 TGCATCAACCATAGAAGAAGGGA 59.477 43.478 0.00 0.00 0.00 4.20
2500 5022 3.881688 CTGCATCAACCATAGAAGAAGGG 59.118 47.826 0.00 0.00 0.00 3.95
2501 5023 4.774124 TCTGCATCAACCATAGAAGAAGG 58.226 43.478 0.00 0.00 0.00 3.46
2502 5024 5.668471 TCTCTGCATCAACCATAGAAGAAG 58.332 41.667 0.00 0.00 0.00 2.85
2503 5025 5.682234 TCTCTGCATCAACCATAGAAGAA 57.318 39.130 0.00 0.00 0.00 2.52
2504 5026 5.364735 TCATCTCTGCATCAACCATAGAAGA 59.635 40.000 0.00 0.00 0.00 2.87
2505 5027 5.608449 TCATCTCTGCATCAACCATAGAAG 58.392 41.667 0.00 0.00 0.00 2.85
2506 5028 5.619132 TCATCTCTGCATCAACCATAGAA 57.381 39.130 0.00 0.00 0.00 2.10
2507 5029 5.619132 TTCATCTCTGCATCAACCATAGA 57.381 39.130 0.00 0.00 0.00 1.98
2508 5030 6.688637 TTTTCATCTCTGCATCAACCATAG 57.311 37.500 0.00 0.00 0.00 2.23
2509 5031 8.929260 ATATTTTCATCTCTGCATCAACCATA 57.071 30.769 0.00 0.00 0.00 2.74
2510 5032 7.834881 ATATTTTCATCTCTGCATCAACCAT 57.165 32.000 0.00 0.00 0.00 3.55
2511 5033 7.485810 CAATATTTTCATCTCTGCATCAACCA 58.514 34.615 0.00 0.00 0.00 3.67
2512 5034 6.420008 GCAATATTTTCATCTCTGCATCAACC 59.580 38.462 0.00 0.00 0.00 3.77
2513 5035 6.420008 GGCAATATTTTCATCTCTGCATCAAC 59.580 38.462 0.00 0.00 0.00 3.18
2514 5036 6.461927 GGGCAATATTTTCATCTCTGCATCAA 60.462 38.462 0.00 0.00 0.00 2.57
2515 5037 5.010314 GGGCAATATTTTCATCTCTGCATCA 59.990 40.000 0.00 0.00 0.00 3.07
2516 5038 5.243283 AGGGCAATATTTTCATCTCTGCATC 59.757 40.000 0.00 0.00 0.00 3.91
2517 5039 5.145564 AGGGCAATATTTTCATCTCTGCAT 58.854 37.500 0.00 0.00 0.00 3.96
2518 5040 4.539726 AGGGCAATATTTTCATCTCTGCA 58.460 39.130 0.00 0.00 0.00 4.41
2519 5041 4.826183 AGAGGGCAATATTTTCATCTCTGC 59.174 41.667 0.00 0.00 0.00 4.26
2520 5042 6.956202 AAGAGGGCAATATTTTCATCTCTG 57.044 37.500 0.00 0.00 31.66 3.35
2521 5043 7.968014 AAAAGAGGGCAATATTTTCATCTCT 57.032 32.000 3.43 0.00 32.47 3.10
2522 5044 9.125026 TCTAAAAGAGGGCAATATTTTCATCTC 57.875 33.333 3.43 0.00 0.00 2.75
2523 5045 9.652114 ATCTAAAAGAGGGCAATATTTTCATCT 57.348 29.630 0.00 0.00 0.00 2.90
2526 5048 8.477256 CCAATCTAAAAGAGGGCAATATTTTCA 58.523 33.333 0.00 0.00 0.00 2.69
2527 5049 8.478066 ACCAATCTAAAAGAGGGCAATATTTTC 58.522 33.333 0.00 0.00 0.00 2.29
2528 5050 8.379428 ACCAATCTAAAAGAGGGCAATATTTT 57.621 30.769 0.00 0.00 0.00 1.82
2529 5051 7.978099 ACCAATCTAAAAGAGGGCAATATTT 57.022 32.000 0.00 0.00 0.00 1.40
2530 5052 9.660544 ATTACCAATCTAAAAGAGGGCAATATT 57.339 29.630 0.00 0.00 0.00 1.28
2532 5054 9.569122 GTATTACCAATCTAAAAGAGGGCAATA 57.431 33.333 0.00 0.00 28.01 1.90
2533 5055 8.282256 AGTATTACCAATCTAAAAGAGGGCAAT 58.718 33.333 0.00 0.00 29.35 3.56
2534 5056 7.556275 CAGTATTACCAATCTAAAAGAGGGCAA 59.444 37.037 0.00 0.00 0.00 4.52
2535 5057 7.054124 CAGTATTACCAATCTAAAAGAGGGCA 58.946 38.462 0.00 0.00 0.00 5.36
2536 5058 7.280356 TCAGTATTACCAATCTAAAAGAGGGC 58.720 38.462 0.00 0.00 0.00 5.19
2537 5059 9.331282 CTTCAGTATTACCAATCTAAAAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
2538 5060 8.831550 GCTTCAGTATTACCAATCTAAAAGAGG 58.168 37.037 0.00 0.00 0.00 3.69
2539 5061 8.831550 GGCTTCAGTATTACCAATCTAAAAGAG 58.168 37.037 0.00 0.00 0.00 2.85
2540 5062 8.548877 AGGCTTCAGTATTACCAATCTAAAAGA 58.451 33.333 0.00 0.00 0.00 2.52
2541 5063 8.738645 AGGCTTCAGTATTACCAATCTAAAAG 57.261 34.615 0.00 0.00 0.00 2.27
2542 5064 8.956426 CAAGGCTTCAGTATTACCAATCTAAAA 58.044 33.333 0.00 0.00 0.00 1.52
2543 5065 7.067008 GCAAGGCTTCAGTATTACCAATCTAAA 59.933 37.037 0.00 0.00 0.00 1.85
2544 5066 6.542370 GCAAGGCTTCAGTATTACCAATCTAA 59.458 38.462 0.00 0.00 0.00 2.10
2545 5067 6.055588 GCAAGGCTTCAGTATTACCAATCTA 58.944 40.000 0.00 0.00 0.00 1.98
2546 5068 4.884164 GCAAGGCTTCAGTATTACCAATCT 59.116 41.667 0.00 0.00 0.00 2.40
2547 5069 4.036852 GGCAAGGCTTCAGTATTACCAATC 59.963 45.833 0.00 0.00 0.00 2.67
2548 5070 3.954258 GGCAAGGCTTCAGTATTACCAAT 59.046 43.478 0.00 0.00 0.00 3.16
2549 5071 3.010138 AGGCAAGGCTTCAGTATTACCAA 59.990 43.478 0.00 0.00 0.00 3.67
2550 5072 2.576191 AGGCAAGGCTTCAGTATTACCA 59.424 45.455 0.00 0.00 0.00 3.25
2551 5073 3.206964 GAGGCAAGGCTTCAGTATTACC 58.793 50.000 0.00 0.00 34.72 2.85
2552 5074 3.873910 TGAGGCAAGGCTTCAGTATTAC 58.126 45.455 0.00 0.00 39.64 1.89
2553 5075 4.080356 ACATGAGGCAAGGCTTCAGTATTA 60.080 41.667 8.92 0.00 46.97 0.98
2554 5076 3.285484 CATGAGGCAAGGCTTCAGTATT 58.715 45.455 8.92 0.00 46.97 1.89
2555 5077 2.240667 ACATGAGGCAAGGCTTCAGTAT 59.759 45.455 8.92 0.00 46.97 2.12
2556 5078 1.630369 ACATGAGGCAAGGCTTCAGTA 59.370 47.619 8.92 0.00 46.97 2.74
2557 5079 0.403271 ACATGAGGCAAGGCTTCAGT 59.597 50.000 8.92 4.86 46.97 3.41
2558 5080 0.809385 CACATGAGGCAAGGCTTCAG 59.191 55.000 8.92 4.32 46.97 3.02
2560 5082 1.093159 CTCACATGAGGCAAGGCTTC 58.907 55.000 0.00 0.00 38.48 3.86
2561 5083 0.964358 GCTCACATGAGGCAAGGCTT 60.964 55.000 10.81 0.00 42.29 4.35
2562 5084 1.378250 GCTCACATGAGGCAAGGCT 60.378 57.895 10.81 0.00 42.29 4.58
2563 5085 3.194719 GCTCACATGAGGCAAGGC 58.805 61.111 10.81 0.00 42.29 4.35
2569 5091 0.979709 TGGAGAGGGCTCACATGAGG 60.980 60.000 10.81 0.00 43.14 3.86
2570 5092 0.907486 TTGGAGAGGGCTCACATGAG 59.093 55.000 0.00 4.43 43.14 2.90
2571 5093 1.280133 CTTTGGAGAGGGCTCACATGA 59.720 52.381 0.00 0.00 43.14 3.07
2572 5094 1.004044 ACTTTGGAGAGGGCTCACATG 59.996 52.381 0.00 0.00 43.14 3.21
2573 5095 1.280421 GACTTTGGAGAGGGCTCACAT 59.720 52.381 0.00 0.00 43.14 3.21
2574 5096 0.687354 GACTTTGGAGAGGGCTCACA 59.313 55.000 0.00 0.00 43.14 3.58
2575 5097 0.390472 CGACTTTGGAGAGGGCTCAC 60.390 60.000 0.00 0.00 43.14 3.51
2576 5098 1.975327 CGACTTTGGAGAGGGCTCA 59.025 57.895 0.00 0.00 43.14 4.26
2577 5099 1.448717 GCGACTTTGGAGAGGGCTC 60.449 63.158 0.00 0.00 40.54 4.70
2578 5100 0.614979 TAGCGACTTTGGAGAGGGCT 60.615 55.000 0.00 0.00 33.38 5.19
2579 5101 0.249398 TTAGCGACTTTGGAGAGGGC 59.751 55.000 0.00 0.00 0.00 5.19
2580 5102 2.347731 GTTTAGCGACTTTGGAGAGGG 58.652 52.381 0.00 0.00 0.00 4.30
2581 5103 2.289444 TGGTTTAGCGACTTTGGAGAGG 60.289 50.000 0.00 0.00 0.00 3.69
2582 5104 3.040147 TGGTTTAGCGACTTTGGAGAG 57.960 47.619 0.00 0.00 0.00 3.20
2583 5105 3.399330 CTTGGTTTAGCGACTTTGGAGA 58.601 45.455 0.00 0.00 0.00 3.71
2584 5106 2.484264 CCTTGGTTTAGCGACTTTGGAG 59.516 50.000 0.00 0.00 0.00 3.86
2585 5107 2.105134 TCCTTGGTTTAGCGACTTTGGA 59.895 45.455 0.00 0.00 0.00 3.53
2586 5108 2.225727 GTCCTTGGTTTAGCGACTTTGG 59.774 50.000 0.00 0.00 0.00 3.28
2587 5109 3.139077 AGTCCTTGGTTTAGCGACTTTG 58.861 45.455 0.00 0.00 29.59 2.77
2588 5110 3.487120 AGTCCTTGGTTTAGCGACTTT 57.513 42.857 0.00 0.00 29.59 2.66
2589 5111 3.487120 AAGTCCTTGGTTTAGCGACTT 57.513 42.857 0.00 0.00 38.60 3.01
2590 5112 3.487120 AAAGTCCTTGGTTTAGCGACT 57.513 42.857 0.00 0.00 35.34 4.18
2591 5113 3.813724 AGAAAAGTCCTTGGTTTAGCGAC 59.186 43.478 0.00 0.00 0.00 5.19
2592 5114 3.813166 CAGAAAAGTCCTTGGTTTAGCGA 59.187 43.478 0.00 0.00 0.00 4.93
2593 5115 3.564225 ACAGAAAAGTCCTTGGTTTAGCG 59.436 43.478 0.00 0.00 0.00 4.26
2594 5116 5.515797 AACAGAAAAGTCCTTGGTTTAGC 57.484 39.130 0.00 0.00 0.00 3.09
2597 5119 8.758829 AGATTAAAACAGAAAAGTCCTTGGTTT 58.241 29.630 0.00 0.00 0.00 3.27
2598 5120 8.306313 AGATTAAAACAGAAAAGTCCTTGGTT 57.694 30.769 0.00 0.00 0.00 3.67
2599 5121 7.898014 AGATTAAAACAGAAAAGTCCTTGGT 57.102 32.000 0.00 0.00 0.00 3.67
2600 5122 9.599866 AAAAGATTAAAACAGAAAAGTCCTTGG 57.400 29.630 0.00 0.00 0.00 3.61
2602 5124 9.516314 CGAAAAGATTAAAACAGAAAAGTCCTT 57.484 29.630 0.00 0.00 0.00 3.36
2603 5125 8.683615 ACGAAAAGATTAAAACAGAAAAGTCCT 58.316 29.630 0.00 0.00 0.00 3.85
2604 5126 8.743099 CACGAAAAGATTAAAACAGAAAAGTCC 58.257 33.333 0.00 0.00 0.00 3.85
2605 5127 9.498307 TCACGAAAAGATTAAAACAGAAAAGTC 57.502 29.630 0.00 0.00 0.00 3.01
2606 5128 9.503427 CTCACGAAAAGATTAAAACAGAAAAGT 57.497 29.630 0.00 0.00 0.00 2.66
2607 5129 9.716507 TCTCACGAAAAGATTAAAACAGAAAAG 57.283 29.630 0.00 0.00 0.00 2.27
2609 5131 9.878599 GATCTCACGAAAAGATTAAAACAGAAA 57.121 29.630 0.00 0.00 33.64 2.52
2610 5132 8.504005 GGATCTCACGAAAAGATTAAAACAGAA 58.496 33.333 0.00 0.00 33.64 3.02
2611 5133 7.119262 GGGATCTCACGAAAAGATTAAAACAGA 59.881 37.037 0.00 0.00 33.64 3.41
2612 5134 7.244192 GGGATCTCACGAAAAGATTAAAACAG 58.756 38.462 0.00 0.00 33.64 3.16
2613 5135 7.141100 GGGATCTCACGAAAAGATTAAAACA 57.859 36.000 0.00 0.00 33.64 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.