Multiple sequence alignment - TraesCS2D01G453200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G453200 chr2D 100.000 2282 0 0 1 2282 562234286 562236567 0.000000e+00 4215.0
1 TraesCS2D01G453200 chr2D 83.682 1863 162 57 1 1793 562267027 562268817 0.000000e+00 1626.0
2 TraesCS2D01G453200 chr2D 84.607 968 98 33 687 1635 562340676 562341611 0.000000e+00 915.0
3 TraesCS2D01G453200 chr2D 81.854 766 74 24 886 1616 562353531 562354266 3.270000e-163 584.0
4 TraesCS2D01G453200 chr2D 89.937 318 28 3 1319 1634 562315843 562316158 7.590000e-110 407.0
5 TraesCS2D01G453200 chr2D 78.187 651 104 26 1004 1625 562362548 562363189 4.600000e-102 381.0
6 TraesCS2D01G453200 chr2D 89.732 224 19 2 996 1218 562449267 562449487 1.330000e-72 283.0
7 TraesCS2D01G453200 chr2D 83.681 288 27 9 1991 2265 315116997 315116717 1.050000e-63 254.0
8 TraesCS2D01G453200 chr2D 87.845 181 8 4 619 799 562306473 562306639 1.380000e-47 200.0
9 TraesCS2D01G453200 chr2D 83.333 162 16 5 1635 1796 562354325 562354475 3.060000e-29 139.0
10 TraesCS2D01G453200 chr2B 86.111 1152 84 27 207 1332 672022459 672023560 0.000000e+00 1171.0
11 TraesCS2D01G453200 chr2B 86.588 1014 84 20 632 1630 671909881 671910857 0.000000e+00 1072.0
12 TraesCS2D01G453200 chr2B 86.196 652 44 22 1 629 671903541 671904169 0.000000e+00 664.0
13 TraesCS2D01G453200 chr2B 86.029 272 31 4 1012 1281 673170698 673170964 3.710000e-73 285.0
14 TraesCS2D01G453200 chr2B 92.105 190 15 0 1 190 672022226 672022415 3.740000e-68 268.0
15 TraesCS2D01G453200 chr2B 85.976 164 18 3 1635 1797 672030958 672031117 1.080000e-38 171.0
16 TraesCS2D01G453200 chr2B 83.838 99 10 4 1991 2089 18916605 18916697 3.120000e-14 89.8
17 TraesCS2D01G453200 chr2A 86.994 815 56 14 1 769 702939267 702940077 0.000000e+00 872.0
18 TraesCS2D01G453200 chr2A 85.129 659 67 21 884 1530 702940157 702940796 0.000000e+00 645.0
19 TraesCS2D01G453200 chr2A 81.601 837 96 37 808 1616 702956684 702957490 6.870000e-180 640.0
20 TraesCS2D01G453200 chr2A 79.343 731 63 46 915 1618 702950939 702951608 1.250000e-117 433.0
21 TraesCS2D01G453200 chr2A 86.397 272 30 5 1012 1281 703353829 703354095 7.970000e-75 291.0
22 TraesCS2D01G453200 chr2A 77.177 333 55 13 1311 1625 703095763 703096092 8.380000e-40 174.0
23 TraesCS2D01G453200 chr2A 81.463 205 30 2 420 624 702948662 702948858 6.520000e-36 161.0
24 TraesCS2D01G453200 chr1D 88.235 238 15 7 2035 2265 240119196 240118965 2.890000e-69 272.0
25 TraesCS2D01G453200 chr1D 83.264 239 23 5 2045 2272 427789420 427789188 1.070000e-48 204.0
26 TraesCS2D01G453200 chr6D 87.054 224 19 3 2042 2265 27457152 27457365 6.300000e-61 244.0
27 TraesCS2D01G453200 chr6D 82.105 285 32 7 1991 2262 209436265 209436543 2.280000e-55 226.0
28 TraesCS2D01G453200 chr6D 78.244 262 25 16 1991 2246 50204777 50204542 3.060000e-29 139.0
29 TraesCS2D01G453200 chr1A 81.848 303 33 8 1979 2265 463356307 463356603 3.790000e-58 235.0
30 TraesCS2D01G453200 chr3D 75.449 501 95 19 1027 1504 66247247 66247742 3.820000e-53 219.0
31 TraesCS2D01G453200 chr7A 82.308 260 37 5 2009 2265 652304894 652305147 1.370000e-52 217.0
32 TraesCS2D01G453200 chr3A 84.255 235 24 9 2035 2265 64327886 64328111 1.370000e-52 217.0
33 TraesCS2D01G453200 chr4D 83.197 244 24 6 2041 2274 467869563 467869327 8.260000e-50 207.0
34 TraesCS2D01G453200 chr7D 80.634 284 34 8 1994 2265 164631195 164631469 1.380000e-47 200.0
35 TraesCS2D01G453200 chr4A 78.231 294 38 11 1991 2265 709856685 709856399 5.040000e-37 165.0
36 TraesCS2D01G453200 chr5B 82.609 115 16 3 1991 2102 139409819 139409706 5.190000e-17 99.0
37 TraesCS2D01G453200 chr5B 85.882 85 8 4 1994 2078 423626213 423626133 1.120000e-13 87.9
38 TraesCS2D01G453200 chr6A 85.882 85 8 3 1994 2078 404243362 404243282 1.120000e-13 87.9
39 TraesCS2D01G453200 chr7B 81.818 99 12 3 1991 2089 41336197 41336105 6.760000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G453200 chr2D 562234286 562236567 2281 False 4215.0 4215 100.0000 1 2282 1 chr2D.!!$F1 2281
1 TraesCS2D01G453200 chr2D 562267027 562268817 1790 False 1626.0 1626 83.6820 1 1793 1 chr2D.!!$F2 1792
2 TraesCS2D01G453200 chr2D 562340676 562341611 935 False 915.0 915 84.6070 687 1635 1 chr2D.!!$F5 948
3 TraesCS2D01G453200 chr2D 562362548 562363189 641 False 381.0 381 78.1870 1004 1625 1 chr2D.!!$F6 621
4 TraesCS2D01G453200 chr2D 562353531 562354475 944 False 361.5 584 82.5935 886 1796 2 chr2D.!!$F8 910
5 TraesCS2D01G453200 chr2B 671909881 671910857 976 False 1072.0 1072 86.5880 632 1630 1 chr2B.!!$F3 998
6 TraesCS2D01G453200 chr2B 672022226 672023560 1334 False 719.5 1171 89.1080 1 1332 2 chr2B.!!$F6 1331
7 TraesCS2D01G453200 chr2B 671903541 671904169 628 False 664.0 664 86.1960 1 629 1 chr2B.!!$F2 628
8 TraesCS2D01G453200 chr2A 702939267 702940796 1529 False 758.5 872 86.0615 1 1530 2 chr2A.!!$F4 1529
9 TraesCS2D01G453200 chr2A 702956684 702957490 806 False 640.0 640 81.6010 808 1616 1 chr2A.!!$F1 808
10 TraesCS2D01G453200 chr2A 702948662 702951608 2946 False 297.0 433 80.4030 420 1618 2 chr2A.!!$F5 1198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 527 0.035343 GTTCAGGCCAGGGGTACTTC 60.035 60.0 5.01 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 4374 0.17899 GACTCACCTGGCCAAACCTT 60.179 55.0 7.01 0.0 40.22 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.673333 CTGGTGCTGGCGTATGACAA 60.673 55.000 0.00 0.00 27.78 3.18
60 61 4.098196 GGTGTAGAGGTGTAGACAAGATCC 59.902 50.000 0.00 0.00 0.00 3.36
148 149 3.770040 CTCGCCCATGGACCACGA 61.770 66.667 15.22 15.21 0.00 4.35
190 191 2.414691 GGCTGCACCTCGATTTCTTTTC 60.415 50.000 0.50 0.00 34.51 2.29
192 193 3.669023 GCTGCACCTCGATTTCTTTTCTG 60.669 47.826 0.00 0.00 0.00 3.02
193 194 3.738982 TGCACCTCGATTTCTTTTCTGA 58.261 40.909 0.00 0.00 0.00 3.27
194 195 4.133820 TGCACCTCGATTTCTTTTCTGAA 58.866 39.130 0.00 0.00 0.00 3.02
195 196 4.578516 TGCACCTCGATTTCTTTTCTGAAA 59.421 37.500 0.00 0.00 39.79 2.69
433 473 6.925718 TGGAGCGAATATTTACTCAGATCTTG 59.074 38.462 16.21 0.00 0.00 3.02
458 498 2.096819 CGAGAGAAAAGTAGAGCGAGCT 59.903 50.000 0.00 0.00 0.00 4.09
478 524 0.111639 TTTGTTCAGGCCAGGGGTAC 59.888 55.000 5.01 0.00 0.00 3.34
479 525 0.770557 TTGTTCAGGCCAGGGGTACT 60.771 55.000 5.01 0.00 0.00 2.73
480 526 0.770557 TGTTCAGGCCAGGGGTACTT 60.771 55.000 5.01 0.00 0.00 2.24
481 527 0.035343 GTTCAGGCCAGGGGTACTTC 60.035 60.000 5.01 0.00 0.00 3.01
482 528 1.550130 TTCAGGCCAGGGGTACTTCG 61.550 60.000 5.01 0.00 0.00 3.79
483 529 2.687566 AGGCCAGGGGTACTTCGG 60.688 66.667 5.01 0.00 0.00 4.30
484 530 3.007323 GGCCAGGGGTACTTCGGT 61.007 66.667 0.00 0.00 0.00 4.69
566 624 4.590487 GCGCTAGCACACAGGTTA 57.410 55.556 16.45 0.00 44.35 2.85
579 638 2.093128 CACAGGTTAGGGGTACATGGAC 60.093 54.545 0.00 0.00 31.98 4.02
580 639 1.489230 CAGGTTAGGGGTACATGGACC 59.511 57.143 19.90 19.90 38.93 4.46
607 667 1.021202 CTCTGGAGCGACCTCTGTAG 58.979 60.000 4.77 0.00 38.21 2.74
805 2101 1.775039 CGCATGGTATTGCCTGACCG 61.775 60.000 0.00 0.00 39.52 4.79
806 2102 1.447317 GCATGGTATTGCCTGACCGG 61.447 60.000 0.00 0.00 38.69 5.28
860 2168 0.245539 CTGTTTTCTCCTCGCGGGTA 59.754 55.000 4.71 0.00 36.25 3.69
861 2169 0.245539 TGTTTTCTCCTCGCGGGTAG 59.754 55.000 4.71 0.00 36.25 3.18
863 2171 1.610554 TTTTCTCCTCGCGGGTAGGG 61.611 60.000 4.71 0.83 34.66 3.53
865 2173 4.835891 CTCCTCGCGGGTAGGGGT 62.836 72.222 4.71 0.00 34.66 4.95
873 2181 3.455469 GGGTAGGGGTCGTGTCCG 61.455 72.222 0.00 0.00 0.00 4.79
874 2182 4.139234 GGTAGGGGTCGTGTCCGC 62.139 72.222 0.00 0.00 40.15 5.54
875 2183 4.487412 GTAGGGGTCGTGTCCGCG 62.487 72.222 0.00 0.00 43.76 6.46
920 2254 0.385390 CCCAGTTTGGTTCAGCACAC 59.615 55.000 0.00 0.00 35.17 3.82
937 2891 3.821033 GCACACCAAATACTCTCAACCTT 59.179 43.478 0.00 0.00 0.00 3.50
938 2892 4.278419 GCACACCAAATACTCTCAACCTTT 59.722 41.667 0.00 0.00 0.00 3.11
947 2901 1.344763 CTCTCAACCTTTCACTCCCGT 59.655 52.381 0.00 0.00 0.00 5.28
961 2921 3.055719 CCGTCGCACCAAAGGCAT 61.056 61.111 0.00 0.00 0.00 4.40
967 2927 1.851021 CGCACCAAAGGCATCAACGA 61.851 55.000 0.00 0.00 0.00 3.85
990 2957 0.721718 GCCAAGTTAGCTACACGCAG 59.278 55.000 0.00 0.00 42.61 5.18
995 2962 0.989890 GTTAGCTACACGCAGGAACG 59.010 55.000 0.00 0.00 42.61 3.95
1122 3113 3.181486 GCGACATCTTCATGTACAGAGGA 60.181 47.826 0.33 5.74 43.79 3.71
1134 3125 1.122019 ACAGAGGAGACACGCCCTTT 61.122 55.000 0.00 0.00 31.84 3.11
1266 3267 1.995626 CCGGGAGTCATGGGAGGTT 60.996 63.158 0.00 0.00 0.00 3.50
1283 3284 1.798725 TTTCCGTCGCGAGCTAACG 60.799 57.895 10.24 10.08 36.22 3.18
1288 3289 3.367743 TCGCGAGCTAACGGGTGT 61.368 61.111 3.71 0.00 44.35 4.16
1316 3340 1.374758 GCTGCCTACGCACTTGAGT 60.375 57.895 0.00 0.00 41.12 3.41
1332 3356 3.934457 TGAGTCAACAAGATCTGCGTA 57.066 42.857 0.00 0.00 0.00 4.42
1337 3361 1.390123 CAACAAGATCTGCGTACACGG 59.610 52.381 0.00 0.00 40.23 4.94
1365 3392 1.216977 CGCCCGTGACCAACTGATA 59.783 57.895 0.00 0.00 0.00 2.15
1379 3412 1.004277 CTGATAAGCGCGGGATCGAC 61.004 60.000 8.83 0.00 39.00 4.20
1390 3423 2.328639 GATCGACGAGACTCGCCC 59.671 66.667 24.38 15.10 45.12 6.13
1508 3556 1.694133 GGGGCTGGACTGGATCTGAG 61.694 65.000 0.00 0.00 0.00 3.35
1618 3708 4.093408 TCTGTATGAGAGCGAATTTGCAAC 59.907 41.667 19.82 12.60 37.31 4.17
1636 3759 2.908073 CGGCACTTGCACTGGGTTC 61.908 63.158 3.15 0.00 44.36 3.62
1645 3768 1.875963 CACTGGGTTCGTGCAATCC 59.124 57.895 0.00 0.00 35.48 3.01
1646 3769 1.303317 ACTGGGTTCGTGCAATCCC 60.303 57.895 9.06 9.06 33.61 3.85
1680 3803 1.634757 TTCAGCGTGCGTGCTAATGG 61.635 55.000 1.83 0.00 45.23 3.16
1685 3808 0.732571 CGTGCGTGCTAATGGGATTT 59.267 50.000 0.00 0.00 0.00 2.17
1686 3809 1.132262 CGTGCGTGCTAATGGGATTTT 59.868 47.619 0.00 0.00 0.00 1.82
1696 3819 7.543756 GTGCTAATGGGATTTTACAAGCTAAA 58.456 34.615 0.00 0.00 0.00 1.85
1699 3822 6.926630 AATGGGATTTTACAAGCTAAACCA 57.073 33.333 0.00 0.00 0.00 3.67
1713 3836 4.398044 AGCTAAACCATTGGATGTTTACCG 59.602 41.667 10.37 0.00 0.00 4.02
1717 3840 1.134175 CCATTGGATGTTTACCGCACC 59.866 52.381 0.00 0.00 0.00 5.01
1738 3861 8.543774 CGCACCATTTAAAACTGAATTTTGTTA 58.456 29.630 0.00 0.00 40.80 2.41
1739 3862 9.644993 GCACCATTTAAAACTGAATTTTGTTAC 57.355 29.630 0.00 0.00 40.80 2.50
1747 3871 8.579682 AAAACTGAATTTTGTTACAGATCTGC 57.420 30.769 22.83 7.24 39.13 4.26
1755 3879 2.263077 GTTACAGATCTGCGGTGTCAG 58.737 52.381 22.83 0.00 35.46 3.51
1796 3920 1.134367 TCTGATGGCTAAACTCGGTCG 59.866 52.381 0.00 0.00 0.00 4.79
1797 3921 0.892755 TGATGGCTAAACTCGGTCGT 59.107 50.000 0.00 0.00 0.00 4.34
1798 3922 1.274167 TGATGGCTAAACTCGGTCGTT 59.726 47.619 0.00 0.00 0.00 3.85
1799 3923 2.289195 TGATGGCTAAACTCGGTCGTTT 60.289 45.455 0.00 0.00 40.06 3.60
1800 3924 2.243602 TGGCTAAACTCGGTCGTTTT 57.756 45.000 4.29 0.00 38.08 2.43
1801 3925 2.137523 TGGCTAAACTCGGTCGTTTTC 58.862 47.619 4.29 0.00 38.08 2.29
1802 3926 2.224113 TGGCTAAACTCGGTCGTTTTCT 60.224 45.455 4.29 0.00 38.08 2.52
1803 3927 2.804527 GGCTAAACTCGGTCGTTTTCTT 59.195 45.455 4.29 0.00 38.08 2.52
1804 3928 3.249320 GGCTAAACTCGGTCGTTTTCTTT 59.751 43.478 4.29 0.00 38.08 2.52
1805 3929 4.260907 GGCTAAACTCGGTCGTTTTCTTTT 60.261 41.667 4.29 0.00 38.08 2.27
1806 3930 5.268544 GCTAAACTCGGTCGTTTTCTTTTT 58.731 37.500 4.29 0.00 38.08 1.94
1807 3931 5.170803 GCTAAACTCGGTCGTTTTCTTTTTG 59.829 40.000 4.29 0.00 38.08 2.44
1808 3932 3.060978 ACTCGGTCGTTTTCTTTTTGC 57.939 42.857 0.00 0.00 0.00 3.68
1809 3933 2.034076 CTCGGTCGTTTTCTTTTTGCG 58.966 47.619 0.00 0.00 0.00 4.85
1810 3934 1.117234 CGGTCGTTTTCTTTTTGCGG 58.883 50.000 0.00 0.00 0.00 5.69
1811 3935 1.483316 GGTCGTTTTCTTTTTGCGGG 58.517 50.000 0.00 0.00 0.00 6.13
1812 3936 0.850217 GTCGTTTTCTTTTTGCGGGC 59.150 50.000 0.00 0.00 0.00 6.13
1813 3937 0.456221 TCGTTTTCTTTTTGCGGGCA 59.544 45.000 0.00 0.00 0.00 5.36
1814 3938 0.574922 CGTTTTCTTTTTGCGGGCAC 59.425 50.000 0.00 0.00 0.00 5.01
1815 3939 1.801025 CGTTTTCTTTTTGCGGGCACT 60.801 47.619 0.00 0.00 0.00 4.40
1816 3940 2.541999 CGTTTTCTTTTTGCGGGCACTA 60.542 45.455 0.00 0.00 0.00 2.74
1817 3941 3.449632 GTTTTCTTTTTGCGGGCACTAA 58.550 40.909 0.00 0.00 0.00 2.24
1818 3942 3.802948 TTTCTTTTTGCGGGCACTAAA 57.197 38.095 0.00 0.00 0.00 1.85
1819 3943 2.785713 TCTTTTTGCGGGCACTAAAC 57.214 45.000 0.00 0.00 0.00 2.01
1820 3944 2.303175 TCTTTTTGCGGGCACTAAACT 58.697 42.857 0.00 0.00 0.00 2.66
1821 3945 2.292292 TCTTTTTGCGGGCACTAAACTC 59.708 45.455 0.00 0.00 0.00 3.01
1822 3946 0.589223 TTTTGCGGGCACTAAACTCG 59.411 50.000 0.00 0.00 0.00 4.18
1823 3947 1.231958 TTTGCGGGCACTAAACTCGG 61.232 55.000 0.00 0.00 0.00 4.63
1824 3948 2.047560 GCGGGCACTAAACTCGGT 60.048 61.111 0.00 0.00 0.00 4.69
1825 3949 1.216178 GCGGGCACTAAACTCGGTA 59.784 57.895 0.00 0.00 0.00 4.02
1826 3950 0.390209 GCGGGCACTAAACTCGGTAA 60.390 55.000 0.00 0.00 0.00 2.85
1827 3951 1.940752 GCGGGCACTAAACTCGGTAAA 60.941 52.381 0.00 0.00 0.00 2.01
1828 3952 2.415776 CGGGCACTAAACTCGGTAAAA 58.584 47.619 0.00 0.00 0.00 1.52
1829 3953 3.004862 CGGGCACTAAACTCGGTAAAAT 58.995 45.455 0.00 0.00 0.00 1.82
1830 3954 3.437741 CGGGCACTAAACTCGGTAAAATT 59.562 43.478 0.00 0.00 0.00 1.82
1831 3955 4.630940 CGGGCACTAAACTCGGTAAAATTA 59.369 41.667 0.00 0.00 0.00 1.40
1832 3956 5.122082 CGGGCACTAAACTCGGTAAAATTAA 59.878 40.000 0.00 0.00 0.00 1.40
1833 3957 6.348376 CGGGCACTAAACTCGGTAAAATTAAA 60.348 38.462 0.00 0.00 0.00 1.52
1834 3958 7.369607 GGGCACTAAACTCGGTAAAATTAAAA 58.630 34.615 0.00 0.00 0.00 1.52
1835 3959 8.030692 GGGCACTAAACTCGGTAAAATTAAAAT 58.969 33.333 0.00 0.00 0.00 1.82
1859 3983 9.469807 AATATTCTCGATCTACTGAACATCAAC 57.530 33.333 0.00 0.00 0.00 3.18
1860 3984 5.897377 TCTCGATCTACTGAACATCAACA 57.103 39.130 0.00 0.00 0.00 3.33
1861 3985 6.267496 TCTCGATCTACTGAACATCAACAA 57.733 37.500 0.00 0.00 0.00 2.83
1862 3986 6.325596 TCTCGATCTACTGAACATCAACAAG 58.674 40.000 0.00 0.00 0.00 3.16
1863 3987 6.151144 TCTCGATCTACTGAACATCAACAAGA 59.849 38.462 0.00 0.00 0.00 3.02
1864 3988 6.093404 TCGATCTACTGAACATCAACAAGAC 58.907 40.000 0.00 0.00 0.00 3.01
1865 3989 5.863935 CGATCTACTGAACATCAACAAGACA 59.136 40.000 0.00 0.00 0.00 3.41
1866 3990 6.366061 CGATCTACTGAACATCAACAAGACAA 59.634 38.462 0.00 0.00 0.00 3.18
1867 3991 6.844696 TCTACTGAACATCAACAAGACAAC 57.155 37.500 0.00 0.00 0.00 3.32
1868 3992 6.582636 TCTACTGAACATCAACAAGACAACT 58.417 36.000 0.00 0.00 0.00 3.16
1869 3993 5.741388 ACTGAACATCAACAAGACAACTC 57.259 39.130 0.00 0.00 0.00 3.01
1870 3994 5.431765 ACTGAACATCAACAAGACAACTCT 58.568 37.500 0.00 0.00 0.00 3.24
1871 3995 6.582636 ACTGAACATCAACAAGACAACTCTA 58.417 36.000 0.00 0.00 0.00 2.43
1872 3996 6.480320 ACTGAACATCAACAAGACAACTCTAC 59.520 38.462 0.00 0.00 0.00 2.59
1873 3997 6.345298 TGAACATCAACAAGACAACTCTACA 58.655 36.000 0.00 0.00 0.00 2.74
1874 3998 6.821160 TGAACATCAACAAGACAACTCTACAA 59.179 34.615 0.00 0.00 0.00 2.41
1875 3999 7.498900 TGAACATCAACAAGACAACTCTACAAT 59.501 33.333 0.00 0.00 0.00 2.71
1876 4000 8.902540 AACATCAACAAGACAACTCTACAATA 57.097 30.769 0.00 0.00 0.00 1.90
1877 4001 8.311650 ACATCAACAAGACAACTCTACAATAC 57.688 34.615 0.00 0.00 0.00 1.89
1878 4002 8.150945 ACATCAACAAGACAACTCTACAATACT 58.849 33.333 0.00 0.00 0.00 2.12
1879 4003 8.993121 CATCAACAAGACAACTCTACAATACTT 58.007 33.333 0.00 0.00 0.00 2.24
1883 4007 9.654663 AACAAGACAACTCTACAATACTTATCC 57.345 33.333 0.00 0.00 0.00 2.59
1884 4008 9.036980 ACAAGACAACTCTACAATACTTATCCT 57.963 33.333 0.00 0.00 0.00 3.24
1911 4035 6.405278 AAAACTCCACTGGACTAATTTTGG 57.595 37.500 0.00 0.00 0.00 3.28
1912 4036 3.421844 ACTCCACTGGACTAATTTTGGC 58.578 45.455 0.00 0.00 0.00 4.52
1913 4037 2.755103 CTCCACTGGACTAATTTTGGCC 59.245 50.000 0.00 0.00 0.00 5.36
1914 4038 2.378547 TCCACTGGACTAATTTTGGCCT 59.621 45.455 3.32 0.00 0.00 5.19
1915 4039 3.165071 CCACTGGACTAATTTTGGCCTT 58.835 45.455 3.32 0.00 0.00 4.35
1916 4040 3.056607 CCACTGGACTAATTTTGGCCTTG 60.057 47.826 3.32 1.96 0.00 3.61
1917 4041 3.826157 CACTGGACTAATTTTGGCCTTGA 59.174 43.478 3.32 0.00 0.00 3.02
1918 4042 4.082125 ACTGGACTAATTTTGGCCTTGAG 58.918 43.478 3.32 0.00 0.00 3.02
1919 4043 4.082125 CTGGACTAATTTTGGCCTTGAGT 58.918 43.478 3.32 0.00 0.00 3.41
1920 4044 4.479158 TGGACTAATTTTGGCCTTGAGTT 58.521 39.130 3.32 0.00 0.00 3.01
1921 4045 5.636123 TGGACTAATTTTGGCCTTGAGTTA 58.364 37.500 3.32 0.00 0.00 2.24
1922 4046 5.710099 TGGACTAATTTTGGCCTTGAGTTAG 59.290 40.000 3.32 8.97 0.00 2.34
1923 4047 5.125578 GGACTAATTTTGGCCTTGAGTTAGG 59.874 44.000 3.32 0.00 38.40 2.69
1924 4048 5.887754 ACTAATTTTGGCCTTGAGTTAGGA 58.112 37.500 3.32 0.00 37.50 2.94
1925 4049 6.311735 ACTAATTTTGGCCTTGAGTTAGGAA 58.688 36.000 3.32 0.00 37.50 3.36
1926 4050 6.954102 ACTAATTTTGGCCTTGAGTTAGGAAT 59.046 34.615 3.32 0.00 37.50 3.01
1927 4051 6.686484 AATTTTGGCCTTGAGTTAGGAATT 57.314 33.333 3.32 0.00 37.50 2.17
1928 4052 6.686484 ATTTTGGCCTTGAGTTAGGAATTT 57.314 33.333 3.32 0.00 37.50 1.82
1929 4053 7.790782 ATTTTGGCCTTGAGTTAGGAATTTA 57.209 32.000 3.32 0.00 37.50 1.40
1930 4054 7.604657 TTTTGGCCTTGAGTTAGGAATTTAA 57.395 32.000 3.32 0.00 37.50 1.52
1931 4055 7.604657 TTTGGCCTTGAGTTAGGAATTTAAA 57.395 32.000 3.32 0.00 37.50 1.52
1932 4056 7.790782 TTGGCCTTGAGTTAGGAATTTAAAT 57.209 32.000 3.32 0.00 37.50 1.40
1933 4057 7.790782 TGGCCTTGAGTTAGGAATTTAAATT 57.209 32.000 13.24 13.24 37.50 1.82
1934 4058 7.836842 TGGCCTTGAGTTAGGAATTTAAATTC 58.163 34.615 26.19 26.19 43.12 2.17
1935 4059 7.453126 TGGCCTTGAGTTAGGAATTTAAATTCA 59.547 33.333 31.78 16.77 45.10 2.57
1936 4060 7.759886 GGCCTTGAGTTAGGAATTTAAATTCAC 59.240 37.037 31.78 23.93 45.10 3.18
1937 4061 8.523658 GCCTTGAGTTAGGAATTTAAATTCACT 58.476 33.333 31.78 27.01 45.10 3.41
1938 4062 9.846248 CCTTGAGTTAGGAATTTAAATTCACTG 57.154 33.333 31.78 18.62 45.10 3.66
1939 4063 9.346725 CTTGAGTTAGGAATTTAAATTCACTGC 57.653 33.333 31.78 22.84 45.10 4.40
1940 4064 8.402798 TGAGTTAGGAATTTAAATTCACTGCA 57.597 30.769 31.78 23.02 45.10 4.41
1941 4065 8.855110 TGAGTTAGGAATTTAAATTCACTGCAA 58.145 29.630 31.78 19.09 45.10 4.08
1942 4066 9.860898 GAGTTAGGAATTTAAATTCACTGCAAT 57.139 29.630 31.78 19.50 45.10 3.56
1943 4067 9.643693 AGTTAGGAATTTAAATTCACTGCAATG 57.356 29.630 31.78 0.00 45.10 2.82
1944 4068 6.973229 AGGAATTTAAATTCACTGCAATGC 57.027 33.333 31.78 17.01 45.10 3.56
1945 4069 6.704310 AGGAATTTAAATTCACTGCAATGCT 58.296 32.000 31.78 18.51 45.10 3.79
1946 4070 7.839907 AGGAATTTAAATTCACTGCAATGCTA 58.160 30.769 31.78 0.00 45.10 3.49
1947 4071 7.977853 AGGAATTTAAATTCACTGCAATGCTAG 59.022 33.333 31.78 4.98 45.10 3.42
1948 4072 7.975616 GGAATTTAAATTCACTGCAATGCTAGA 59.024 33.333 31.78 0.00 45.10 2.43
1949 4073 9.357652 GAATTTAAATTCACTGCAATGCTAGAA 57.642 29.630 28.20 8.28 43.29 2.10
1950 4074 8.922058 ATTTAAATTCACTGCAATGCTAGAAG 57.078 30.769 6.82 0.00 0.00 2.85
1951 4075 5.972107 AAATTCACTGCAATGCTAGAAGT 57.028 34.783 6.82 4.53 0.00 3.01
1952 4076 8.560355 TTAAATTCACTGCAATGCTAGAAGTA 57.440 30.769 6.82 2.76 0.00 2.24
1953 4077 6.428385 AATTCACTGCAATGCTAGAAGTAC 57.572 37.500 6.82 0.00 0.00 2.73
1954 4078 3.511699 TCACTGCAATGCTAGAAGTACG 58.488 45.455 6.82 0.00 0.00 3.67
1955 4079 3.056821 TCACTGCAATGCTAGAAGTACGT 60.057 43.478 6.82 0.00 0.00 3.57
1956 4080 3.679980 CACTGCAATGCTAGAAGTACGTT 59.320 43.478 6.82 0.00 0.00 3.99
1957 4081 3.679980 ACTGCAATGCTAGAAGTACGTTG 59.320 43.478 6.82 0.00 34.22 4.10
1958 4082 3.659786 TGCAATGCTAGAAGTACGTTGT 58.340 40.909 6.82 0.00 33.74 3.32
1959 4083 4.062293 TGCAATGCTAGAAGTACGTTGTT 58.938 39.130 6.82 0.00 33.74 2.83
1960 4084 4.513692 TGCAATGCTAGAAGTACGTTGTTT 59.486 37.500 6.82 0.00 33.74 2.83
1961 4085 4.846137 GCAATGCTAGAAGTACGTTGTTTG 59.154 41.667 0.00 0.00 33.74 2.93
1962 4086 5.560183 GCAATGCTAGAAGTACGTTGTTTGT 60.560 40.000 0.00 0.00 33.74 2.83
1963 4087 5.591643 ATGCTAGAAGTACGTTGTTTGTG 57.408 39.130 0.00 0.00 0.00 3.33
1964 4088 4.435425 TGCTAGAAGTACGTTGTTTGTGT 58.565 39.130 0.00 0.00 0.00 3.72
1965 4089 5.590145 TGCTAGAAGTACGTTGTTTGTGTA 58.410 37.500 0.00 0.00 0.00 2.90
1966 4090 5.459762 TGCTAGAAGTACGTTGTTTGTGTAC 59.540 40.000 0.00 0.00 38.94 2.90
1968 4092 6.857964 GCTAGAAGTACGTTGTTTGTGTACTA 59.142 38.462 0.00 0.00 45.89 1.82
1969 4093 7.540055 GCTAGAAGTACGTTGTTTGTGTACTAT 59.460 37.037 0.00 1.06 45.89 2.12
1970 4094 7.633361 AGAAGTACGTTGTTTGTGTACTATG 57.367 36.000 0.00 0.00 45.89 2.23
1971 4095 7.205297 AGAAGTACGTTGTTTGTGTACTATGT 58.795 34.615 0.00 0.00 45.89 2.29
1972 4096 6.758593 AGTACGTTGTTTGTGTACTATGTG 57.241 37.500 0.00 0.00 45.06 3.21
1973 4097 6.275335 AGTACGTTGTTTGTGTACTATGTGT 58.725 36.000 0.00 0.00 45.06 3.72
1974 4098 5.398176 ACGTTGTTTGTGTACTATGTGTG 57.602 39.130 0.00 0.00 0.00 3.82
1975 4099 4.271533 ACGTTGTTTGTGTACTATGTGTGG 59.728 41.667 0.00 0.00 0.00 4.17
1976 4100 4.271533 CGTTGTTTGTGTACTATGTGTGGT 59.728 41.667 0.00 0.00 0.00 4.16
1977 4101 5.507077 GTTGTTTGTGTACTATGTGTGGTG 58.493 41.667 0.00 0.00 0.00 4.17
1978 4102 4.130857 TGTTTGTGTACTATGTGTGGTGG 58.869 43.478 0.00 0.00 0.00 4.61
1979 4103 3.410631 TTGTGTACTATGTGTGGTGGG 57.589 47.619 0.00 0.00 0.00 4.61
1980 4104 1.626321 TGTGTACTATGTGTGGTGGGG 59.374 52.381 0.00 0.00 0.00 4.96
1981 4105 0.616371 TGTACTATGTGTGGTGGGGC 59.384 55.000 0.00 0.00 0.00 5.80
1982 4106 0.909623 GTACTATGTGTGGTGGGGCT 59.090 55.000 0.00 0.00 0.00 5.19
1983 4107 1.134491 GTACTATGTGTGGTGGGGCTC 60.134 57.143 0.00 0.00 0.00 4.70
1984 4108 0.840288 ACTATGTGTGGTGGGGCTCA 60.840 55.000 0.00 0.00 0.00 4.26
1985 4109 0.392998 CTATGTGTGGTGGGGCTCAC 60.393 60.000 9.60 9.60 45.34 3.51
1986 4110 2.178876 TATGTGTGGTGGGGCTCACG 62.179 60.000 12.12 0.00 46.96 4.35
1991 4115 4.767255 GGTGGGGCTCACGCTCAG 62.767 72.222 12.12 0.00 46.96 3.35
1992 4116 4.008933 GTGGGGCTCACGCTCAGT 62.009 66.667 0.00 0.00 38.83 3.41
1993 4117 3.695606 TGGGGCTCACGCTCAGTC 61.696 66.667 0.00 0.00 38.83 3.51
1994 4118 4.459089 GGGGCTCACGCTCAGTCC 62.459 72.222 0.00 0.00 38.83 3.85
1995 4119 3.386237 GGGCTCACGCTCAGTCCT 61.386 66.667 0.00 0.00 36.36 3.85
1996 4120 2.125753 GGCTCACGCTCAGTCCTG 60.126 66.667 0.00 0.00 36.09 3.86
1997 4121 2.125753 GCTCACGCTCAGTCCTGG 60.126 66.667 0.00 0.00 0.00 4.45
1998 4122 2.125753 CTCACGCTCAGTCCTGGC 60.126 66.667 0.00 0.00 0.00 4.85
1999 4123 3.655810 CTCACGCTCAGTCCTGGCC 62.656 68.421 0.00 0.00 0.00 5.36
2000 4124 4.007644 CACGCTCAGTCCTGGCCA 62.008 66.667 4.71 4.71 0.00 5.36
2001 4125 3.005539 ACGCTCAGTCCTGGCCAT 61.006 61.111 5.51 0.00 0.00 4.40
2002 4126 2.513204 CGCTCAGTCCTGGCCATG 60.513 66.667 5.51 2.84 0.00 3.66
2003 4127 2.124403 GCTCAGTCCTGGCCATGG 60.124 66.667 5.51 7.63 0.00 3.66
2004 4128 2.593978 CTCAGTCCTGGCCATGGG 59.406 66.667 15.13 4.96 0.00 4.00
2005 4129 1.997311 CTCAGTCCTGGCCATGGGA 60.997 63.158 15.13 8.01 0.00 4.37
2006 4130 1.541118 TCAGTCCTGGCCATGGGAA 60.541 57.895 15.05 0.00 33.01 3.97
2007 4131 1.077212 CAGTCCTGGCCATGGGAAG 60.077 63.158 15.05 7.66 33.01 3.46
2008 4132 2.440980 GTCCTGGCCATGGGAAGC 60.441 66.667 15.05 0.89 33.01 3.86
2035 4159 2.994995 CCCGAAAAGGCCCAACCC 60.995 66.667 0.00 0.00 40.58 4.11
2036 4160 3.370231 CCGAAAAGGCCCAACCCG 61.370 66.667 0.00 0.00 40.58 5.28
2037 4161 3.370231 CGAAAAGGCCCAACCCGG 61.370 66.667 0.00 0.00 40.58 5.73
2054 4178 2.812664 GGCCTGGCCCTAGATTTTG 58.187 57.895 27.77 0.00 44.06 2.44
2055 4179 0.258774 GGCCTGGCCCTAGATTTTGA 59.741 55.000 27.77 0.00 44.06 2.69
2056 4180 1.685148 GCCTGGCCCTAGATTTTGAG 58.315 55.000 7.66 0.00 0.00 3.02
2057 4181 1.685148 CCTGGCCCTAGATTTTGAGC 58.315 55.000 0.00 0.00 0.00 4.26
2058 4182 1.685148 CTGGCCCTAGATTTTGAGCC 58.315 55.000 0.00 0.00 40.87 4.70
2059 4183 0.258774 TGGCCCTAGATTTTGAGCCC 59.741 55.000 0.00 0.00 39.72 5.19
2060 4184 0.819666 GGCCCTAGATTTTGAGCCCG 60.820 60.000 0.00 0.00 34.23 6.13
2061 4185 0.180406 GCCCTAGATTTTGAGCCCGA 59.820 55.000 0.00 0.00 0.00 5.14
2062 4186 1.202818 GCCCTAGATTTTGAGCCCGAT 60.203 52.381 0.00 0.00 0.00 4.18
2063 4187 2.498167 CCCTAGATTTTGAGCCCGATG 58.502 52.381 0.00 0.00 0.00 3.84
2064 4188 2.498167 CCTAGATTTTGAGCCCGATGG 58.502 52.381 0.00 0.00 0.00 3.51
2088 4212 4.032987 CCGGGCCCGTCGTTTTTG 62.033 66.667 40.52 20.46 37.81 2.44
2089 4213 4.693525 CGGGCCCGTCGTTTTTGC 62.694 66.667 36.64 0.00 34.35 3.68
2090 4214 4.693525 GGGCCCGTCGTTTTTGCG 62.694 66.667 5.69 0.00 0.00 4.85
2091 4215 3.956317 GGCCCGTCGTTTTTGCGT 61.956 61.111 0.00 0.00 0.00 5.24
2092 4216 2.025013 GCCCGTCGTTTTTGCGTT 59.975 55.556 0.00 0.00 0.00 4.84
2093 4217 1.586826 GCCCGTCGTTTTTGCGTTT 60.587 52.632 0.00 0.00 0.00 3.60
2094 4218 1.140999 GCCCGTCGTTTTTGCGTTTT 61.141 50.000 0.00 0.00 0.00 2.43
2095 4219 1.270068 CCCGTCGTTTTTGCGTTTTT 58.730 45.000 0.00 0.00 0.00 1.94
2096 4220 1.253289 CCCGTCGTTTTTGCGTTTTTC 59.747 47.619 0.00 0.00 0.00 2.29
2097 4221 1.073308 CCGTCGTTTTTGCGTTTTTCG 60.073 47.619 0.00 0.00 43.12 3.46
2098 4222 1.073308 CGTCGTTTTTGCGTTTTTCGG 60.073 47.619 0.00 0.00 40.26 4.30
2099 4223 2.175566 GTCGTTTTTGCGTTTTTCGGA 58.824 42.857 0.00 0.00 40.26 4.55
2105 4229 0.309612 TTGCGTTTTTCGGAAGAGGC 59.690 50.000 4.78 4.78 44.23 4.70
2106 4230 1.209383 GCGTTTTTCGGAAGAGGCC 59.791 57.895 0.00 0.00 43.69 5.19
2107 4231 1.873863 CGTTTTTCGGAAGAGGCCC 59.126 57.895 0.00 0.00 43.69 5.80
2109 4233 1.302993 TTTTTCGGAAGAGGCCCGG 60.303 57.895 0.00 0.00 46.47 5.73
2110 4234 3.912745 TTTTCGGAAGAGGCCCGGC 62.913 63.158 0.00 0.00 46.47 6.13
2134 4258 3.206374 CCCGGTGGGCTTTTATGC 58.794 61.111 0.00 0.00 35.35 3.14
2135 4259 2.770589 CCCGGTGGGCTTTTATGCG 61.771 63.158 0.00 0.00 35.35 4.73
2136 4260 2.043980 CCGGTGGGCTTTTATGCGT 61.044 57.895 0.00 0.00 0.00 5.24
2137 4261 1.591504 CCGGTGGGCTTTTATGCGTT 61.592 55.000 0.00 0.00 0.00 4.84
2138 4262 0.179174 CGGTGGGCTTTTATGCGTTC 60.179 55.000 0.00 0.00 0.00 3.95
2139 4263 0.179174 GGTGGGCTTTTATGCGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
2140 4264 0.179174 GTGGGCTTTTATGCGTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
2141 4265 1.309499 TGGGCTTTTATGCGTTCGGG 61.309 55.000 0.00 0.00 0.00 5.14
2142 4266 1.310216 GGGCTTTTATGCGTTCGGGT 61.310 55.000 0.00 0.00 0.00 5.28
2143 4267 0.524414 GGCTTTTATGCGTTCGGGTT 59.476 50.000 0.00 0.00 0.00 4.11
2144 4268 1.613270 GCTTTTATGCGTTCGGGTTG 58.387 50.000 0.00 0.00 0.00 3.77
2145 4269 1.731098 GCTTTTATGCGTTCGGGTTGG 60.731 52.381 0.00 0.00 0.00 3.77
2146 4270 0.241481 TTTTATGCGTTCGGGTTGGC 59.759 50.000 0.00 0.00 0.00 4.52
2147 4271 1.587933 TTTATGCGTTCGGGTTGGCC 61.588 55.000 0.00 0.00 0.00 5.36
2148 4272 2.472414 TTATGCGTTCGGGTTGGCCT 62.472 55.000 3.32 0.00 34.45 5.19
2149 4273 2.472414 TATGCGTTCGGGTTGGCCTT 62.472 55.000 3.32 0.00 34.45 4.35
2150 4274 4.038080 GCGTTCGGGTTGGCCTTG 62.038 66.667 3.32 0.00 34.45 3.61
2151 4275 3.361977 CGTTCGGGTTGGCCTTGG 61.362 66.667 3.32 0.00 34.45 3.61
2152 4276 2.989253 GTTCGGGTTGGCCTTGGG 60.989 66.667 3.32 0.00 34.45 4.12
2162 4286 2.429930 GCCTTGGGCCCAAAAACC 59.570 61.111 36.16 20.53 44.06 3.27
2163 4287 2.447714 GCCTTGGGCCCAAAAACCA 61.448 57.895 36.16 15.25 44.06 3.67
2164 4288 1.754107 CCTTGGGCCCAAAAACCAG 59.246 57.895 36.16 23.68 35.37 4.00
2165 4289 1.754107 CTTGGGCCCAAAAACCAGG 59.246 57.895 36.16 19.93 35.37 4.45
2166 4290 2.395988 CTTGGGCCCAAAAACCAGGC 62.396 60.000 36.16 0.00 46.37 4.85
2169 4293 4.002506 GCCCAAAAACCAGGCCCG 62.003 66.667 0.00 0.00 41.00 6.13
2170 4294 2.203567 CCCAAAAACCAGGCCCGA 60.204 61.111 0.00 0.00 0.00 5.14
2171 4295 1.609210 CCCAAAAACCAGGCCCGAT 60.609 57.895 0.00 0.00 0.00 4.18
2172 4296 1.591183 CCAAAAACCAGGCCCGATG 59.409 57.895 0.00 0.00 0.00 3.84
2173 4297 1.591183 CAAAAACCAGGCCCGATGG 59.409 57.895 7.96 7.96 43.87 3.51
2200 4324 4.865629 GCCTGGGCCTAGGTTTTT 57.134 55.556 33.45 0.00 40.11 1.94
2221 4345 4.729918 CTCGGGCTTGGCTTGGCT 62.730 66.667 4.28 0.00 0.00 4.75
2222 4346 3.326578 TCGGGCTTGGCTTGGCTA 61.327 61.111 4.28 0.00 0.00 3.93
2223 4347 2.825836 CGGGCTTGGCTTGGCTAG 60.826 66.667 1.76 1.76 0.00 3.42
2224 4348 2.440980 GGGCTTGGCTTGGCTAGG 60.441 66.667 7.58 0.00 0.00 3.02
2265 4389 3.458653 CCAAGGTTTGGCCAGGTG 58.541 61.111 5.11 0.70 45.17 4.00
2266 4390 1.152567 CCAAGGTTTGGCCAGGTGA 60.153 57.895 5.11 0.00 45.17 4.02
2267 4391 1.181098 CCAAGGTTTGGCCAGGTGAG 61.181 60.000 5.11 0.00 45.17 3.51
2268 4392 0.468029 CAAGGTTTGGCCAGGTGAGT 60.468 55.000 5.11 0.00 40.61 3.41
2269 4393 0.178990 AAGGTTTGGCCAGGTGAGTC 60.179 55.000 5.11 0.00 40.61 3.36
2270 4394 1.150536 GGTTTGGCCAGGTGAGTCA 59.849 57.895 5.11 0.00 37.17 3.41
2271 4395 1.172812 GGTTTGGCCAGGTGAGTCAC 61.173 60.000 15.24 15.24 37.17 3.67
2272 4396 1.227823 TTTGGCCAGGTGAGTCACG 60.228 57.895 16.89 4.81 34.83 4.35
2273 4397 3.825160 TTGGCCAGGTGAGTCACGC 62.825 63.158 16.89 14.12 34.83 5.34
2274 4398 4.008933 GGCCAGGTGAGTCACGCT 62.009 66.667 16.89 12.04 34.83 5.07
2275 4399 2.740055 GCCAGGTGAGTCACGCTG 60.740 66.667 24.00 24.00 34.83 5.18
2276 4400 2.737180 CCAGGTGAGTCACGCTGT 59.263 61.111 26.49 9.52 33.80 4.40
2277 4401 1.665916 CCAGGTGAGTCACGCTGTG 60.666 63.158 26.49 18.98 33.80 3.66
2278 4402 1.068083 CAGGTGAGTCACGCTGTGT 59.932 57.895 23.23 0.00 34.83 3.72
2279 4403 0.530650 CAGGTGAGTCACGCTGTGTT 60.531 55.000 23.23 2.89 34.83 3.32
2280 4404 0.249489 AGGTGAGTCACGCTGTGTTC 60.249 55.000 16.89 0.70 34.83 3.18
2281 4405 1.548973 GGTGAGTCACGCTGTGTTCG 61.549 60.000 16.89 0.00 34.83 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.424403 CACGAACTTGTCATACGCCA 58.576 50.000 0.00 0.00 0.00 5.69
19 20 0.591170 CCCAATCAAACGCACGAACT 59.409 50.000 0.00 0.00 0.00 3.01
169 170 1.168714 AAAGAAATCGAGGTGCAGCC 58.831 50.000 13.29 4.65 37.58 4.85
336 376 6.017192 CGTGGGCATCAAATCTACATCATTAA 60.017 38.462 0.00 0.00 0.00 1.40
433 473 1.551145 CTCTACTTTTCTCTCGGCGC 58.449 55.000 0.00 0.00 0.00 6.53
458 498 0.854218 TACCCCTGGCCTGAACAAAA 59.146 50.000 11.88 0.00 0.00 2.44
478 524 6.310711 GGAAATACAAGTACTGAAGACCGAAG 59.689 42.308 0.00 0.00 0.00 3.79
479 525 6.161381 GGAAATACAAGTACTGAAGACCGAA 58.839 40.000 0.00 0.00 0.00 4.30
480 526 5.244402 TGGAAATACAAGTACTGAAGACCGA 59.756 40.000 0.00 0.00 0.00 4.69
481 527 5.475719 TGGAAATACAAGTACTGAAGACCG 58.524 41.667 0.00 0.00 0.00 4.79
482 528 7.065923 GGAATGGAAATACAAGTACTGAAGACC 59.934 40.741 0.00 0.00 0.00 3.85
483 529 7.606456 TGGAATGGAAATACAAGTACTGAAGAC 59.394 37.037 0.00 0.00 0.00 3.01
484 530 7.685481 TGGAATGGAAATACAAGTACTGAAGA 58.315 34.615 0.00 0.00 0.00 2.87
566 624 3.467226 CGCGGTCCATGTACCCCT 61.467 66.667 1.25 0.00 36.03 4.79
579 638 4.838486 GCTCCAGAGACGTCGCGG 62.838 72.222 18.72 18.72 0.00 6.46
607 667 2.588034 GGGCGACCGATAGCAACC 60.588 66.667 0.00 0.00 43.64 3.77
874 2182 1.652124 GTATATATGGTTGCGCGGACG 59.348 52.381 8.83 0.00 44.07 4.79
875 2183 1.997606 GGTATATATGGTTGCGCGGAC 59.002 52.381 8.83 3.71 0.00 4.79
876 2184 1.066716 GGGTATATATGGTTGCGCGGA 60.067 52.381 8.83 0.00 0.00 5.54
877 2185 1.338294 TGGGTATATATGGTTGCGCGG 60.338 52.381 8.83 0.00 0.00 6.46
878 2186 1.999735 CTGGGTATATATGGTTGCGCG 59.000 52.381 0.00 0.00 0.00 6.86
879 2187 3.000727 GTCTGGGTATATATGGTTGCGC 58.999 50.000 0.00 0.00 0.00 6.09
880 2188 3.596214 GGTCTGGGTATATATGGTTGCG 58.404 50.000 0.00 0.00 0.00 4.85
920 2254 5.412904 GGAGTGAAAGGTTGAGAGTATTTGG 59.587 44.000 0.00 0.00 0.00 3.28
925 2877 2.561419 CGGGAGTGAAAGGTTGAGAGTA 59.439 50.000 0.00 0.00 0.00 2.59
947 2901 1.851021 CGTTGATGCCTTTGGTGCGA 61.851 55.000 0.00 0.00 0.00 5.10
961 2921 1.871039 GCTAACTTGGCAGTTCGTTGA 59.129 47.619 5.75 0.00 42.66 3.18
967 2927 2.413837 CGTGTAGCTAACTTGGCAGTT 58.586 47.619 0.00 7.34 45.73 3.16
990 2957 3.499737 CAGGCCATCGTGCGTTCC 61.500 66.667 5.01 0.00 0.00 3.62
1122 3113 2.555547 GCTGCAAAAGGGCGTGTCT 61.556 57.895 0.00 0.00 36.28 3.41
1266 3267 2.202388 CGTTAGCTCGCGACGGAA 60.202 61.111 3.71 0.00 33.45 4.30
1283 3284 2.113986 AGCTTGGCACTGACACCC 59.886 61.111 0.00 0.00 0.00 4.61
1288 3289 1.003355 GTAGGCAGCTTGGCACTGA 60.003 57.895 9.12 0.00 46.46 3.41
1316 3340 2.324860 CGTGTACGCAGATCTTGTTGA 58.675 47.619 7.29 0.00 0.00 3.18
1355 3382 1.449601 CCCGCGCTTATCAGTTGGT 60.450 57.895 5.56 0.00 0.00 3.67
1365 3392 4.554363 CTCGTCGATCCCGCGCTT 62.554 66.667 5.56 0.00 36.07 4.68
1379 3412 2.125912 CAACCAGGGCGAGTCTCG 60.126 66.667 18.08 18.08 43.89 4.04
1390 3423 1.538950 GCCTCTTGCTTCTTCAACCAG 59.461 52.381 0.00 0.00 36.87 4.00
1508 3556 5.382618 AGAATCCTGTTTGATTGACTTGC 57.617 39.130 0.00 0.00 35.15 4.01
1618 3708 2.906897 AACCCAGTGCAAGTGCCG 60.907 61.111 0.00 0.00 41.18 5.69
1645 3768 3.725895 CGCTGAATCATGAACAGAAACGG 60.726 47.826 26.52 12.27 34.07 4.44
1646 3769 3.120546 ACGCTGAATCATGAACAGAAACG 60.121 43.478 26.52 22.54 34.07 3.60
1675 3798 8.602472 ATGGTTTAGCTTGTAAAATCCCATTA 57.398 30.769 0.00 0.00 0.00 1.90
1680 3803 6.930731 TCCAATGGTTTAGCTTGTAAAATCC 58.069 36.000 0.00 0.00 0.00 3.01
1685 3808 6.909550 AACATCCAATGGTTTAGCTTGTAA 57.090 33.333 0.00 0.00 33.60 2.41
1686 3809 6.909550 AAACATCCAATGGTTTAGCTTGTA 57.090 33.333 0.00 0.00 36.65 2.41
1696 3819 1.816224 GTGCGGTAAACATCCAATGGT 59.184 47.619 0.00 0.00 33.60 3.55
1699 3822 2.208132 TGGTGCGGTAAACATCCAAT 57.792 45.000 0.00 0.00 0.00 3.16
1713 3836 9.644993 GTAACAAAATTCAGTTTTAAATGGTGC 57.355 29.630 1.44 0.00 37.93 5.01
1738 3861 0.969149 TTCTGACACCGCAGATCTGT 59.031 50.000 23.38 4.32 43.84 3.41
1739 3862 1.728971 GTTTCTGACACCGCAGATCTG 59.271 52.381 18.84 18.84 43.84 2.90
1743 3867 0.750249 TCAGTTTCTGACACCGCAGA 59.250 50.000 0.00 0.00 42.81 4.26
1747 3871 2.076863 GGGATTCAGTTTCTGACACCG 58.923 52.381 0.00 0.00 40.46 4.94
1755 3879 7.509546 TCAGATTAGTATGGGGATTCAGTTTC 58.490 38.462 0.00 0.00 0.00 2.78
1796 3920 1.934589 AGTGCCCGCAAAAAGAAAAC 58.065 45.000 0.00 0.00 0.00 2.43
1797 3921 3.802948 TTAGTGCCCGCAAAAAGAAAA 57.197 38.095 0.00 0.00 0.00 2.29
1798 3922 3.131400 AGTTTAGTGCCCGCAAAAAGAAA 59.869 39.130 0.00 0.00 0.00 2.52
1799 3923 2.691011 AGTTTAGTGCCCGCAAAAAGAA 59.309 40.909 0.00 0.00 0.00 2.52
1800 3924 2.292292 GAGTTTAGTGCCCGCAAAAAGA 59.708 45.455 0.00 0.00 0.00 2.52
1801 3925 2.661594 GAGTTTAGTGCCCGCAAAAAG 58.338 47.619 0.00 0.00 0.00 2.27
1802 3926 1.002251 CGAGTTTAGTGCCCGCAAAAA 60.002 47.619 0.00 0.00 0.00 1.94
1803 3927 0.589223 CGAGTTTAGTGCCCGCAAAA 59.411 50.000 0.00 0.00 0.00 2.44
1804 3928 1.231958 CCGAGTTTAGTGCCCGCAAA 61.232 55.000 0.00 0.00 0.00 3.68
1805 3929 1.669760 CCGAGTTTAGTGCCCGCAA 60.670 57.895 0.00 0.00 0.00 4.85
1806 3930 1.534336 TACCGAGTTTAGTGCCCGCA 61.534 55.000 0.00 0.00 0.00 5.69
1807 3931 0.390209 TTACCGAGTTTAGTGCCCGC 60.390 55.000 0.00 0.00 0.00 6.13
1808 3932 2.083167 TTTACCGAGTTTAGTGCCCG 57.917 50.000 0.00 0.00 0.00 6.13
1809 3933 6.499234 TTAATTTTACCGAGTTTAGTGCCC 57.501 37.500 0.00 0.00 0.00 5.36
1810 3934 8.975410 ATTTTAATTTTACCGAGTTTAGTGCC 57.025 30.769 0.00 0.00 0.00 5.01
1833 3957 9.469807 GTTGATGTTCAGTAGATCGAGAATATT 57.530 33.333 0.00 0.00 29.24 1.28
1834 3958 8.633561 TGTTGATGTTCAGTAGATCGAGAATAT 58.366 33.333 0.00 0.00 29.24 1.28
1835 3959 7.996385 TGTTGATGTTCAGTAGATCGAGAATA 58.004 34.615 0.00 0.00 29.24 1.75
1836 3960 6.867550 TGTTGATGTTCAGTAGATCGAGAAT 58.132 36.000 0.00 0.00 29.24 2.40
1837 3961 6.267496 TGTTGATGTTCAGTAGATCGAGAA 57.733 37.500 0.00 0.00 29.24 2.87
1838 3962 5.897377 TGTTGATGTTCAGTAGATCGAGA 57.103 39.130 0.00 0.00 29.24 4.04
1839 3963 6.252441 GTCTTGTTGATGTTCAGTAGATCGAG 59.748 42.308 0.00 0.00 29.24 4.04
1840 3964 6.093404 GTCTTGTTGATGTTCAGTAGATCGA 58.907 40.000 0.00 0.00 29.24 3.59
1841 3965 5.863935 TGTCTTGTTGATGTTCAGTAGATCG 59.136 40.000 0.00 0.00 29.24 3.69
1842 3966 7.386299 AGTTGTCTTGTTGATGTTCAGTAGATC 59.614 37.037 0.00 0.00 0.00 2.75
1843 3967 7.220030 AGTTGTCTTGTTGATGTTCAGTAGAT 58.780 34.615 0.00 0.00 0.00 1.98
1844 3968 6.582636 AGTTGTCTTGTTGATGTTCAGTAGA 58.417 36.000 0.00 0.00 0.00 2.59
1845 3969 6.703607 AGAGTTGTCTTGTTGATGTTCAGTAG 59.296 38.462 0.00 0.00 0.00 2.57
1846 3970 6.582636 AGAGTTGTCTTGTTGATGTTCAGTA 58.417 36.000 0.00 0.00 0.00 2.74
1847 3971 5.431765 AGAGTTGTCTTGTTGATGTTCAGT 58.568 37.500 0.00 0.00 0.00 3.41
1848 3972 5.998454 AGAGTTGTCTTGTTGATGTTCAG 57.002 39.130 0.00 0.00 0.00 3.02
1849 3973 6.345298 TGTAGAGTTGTCTTGTTGATGTTCA 58.655 36.000 0.00 0.00 33.84 3.18
1850 3974 6.844696 TGTAGAGTTGTCTTGTTGATGTTC 57.155 37.500 0.00 0.00 33.84 3.18
1851 3975 7.807977 ATTGTAGAGTTGTCTTGTTGATGTT 57.192 32.000 0.00 0.00 33.84 2.71
1852 3976 8.150945 AGTATTGTAGAGTTGTCTTGTTGATGT 58.849 33.333 0.00 0.00 33.84 3.06
1853 3977 8.539770 AGTATTGTAGAGTTGTCTTGTTGATG 57.460 34.615 0.00 0.00 33.84 3.07
1857 3981 9.654663 GGATAAGTATTGTAGAGTTGTCTTGTT 57.345 33.333 0.00 0.00 33.84 2.83
1858 3982 9.036980 AGGATAAGTATTGTAGAGTTGTCTTGT 57.963 33.333 0.00 0.00 33.84 3.16
1887 4011 6.685368 GCCAAAATTAGTCCAGTGGAGTTTTT 60.685 38.462 24.53 20.68 36.65 1.94
1888 4012 5.221441 GCCAAAATTAGTCCAGTGGAGTTTT 60.221 40.000 24.53 16.34 36.65 2.43
1889 4013 4.280929 GCCAAAATTAGTCCAGTGGAGTTT 59.719 41.667 24.53 11.21 36.65 2.66
1890 4014 3.826729 GCCAAAATTAGTCCAGTGGAGTT 59.173 43.478 24.53 12.64 36.65 3.01
1891 4015 3.421844 GCCAAAATTAGTCCAGTGGAGT 58.578 45.455 23.03 23.03 39.02 3.85
1892 4016 2.755103 GGCCAAAATTAGTCCAGTGGAG 59.245 50.000 13.61 0.00 29.39 3.86
1893 4017 2.378547 AGGCCAAAATTAGTCCAGTGGA 59.621 45.455 8.12 8.12 0.00 4.02
1894 4018 2.807676 AGGCCAAAATTAGTCCAGTGG 58.192 47.619 5.01 1.40 0.00 4.00
1895 4019 3.826157 TCAAGGCCAAAATTAGTCCAGTG 59.174 43.478 5.01 0.00 0.00 3.66
1896 4020 4.082125 CTCAAGGCCAAAATTAGTCCAGT 58.918 43.478 5.01 0.00 0.00 4.00
1897 4021 4.082125 ACTCAAGGCCAAAATTAGTCCAG 58.918 43.478 5.01 0.00 0.00 3.86
1898 4022 4.112634 ACTCAAGGCCAAAATTAGTCCA 57.887 40.909 5.01 0.00 0.00 4.02
1899 4023 5.125578 CCTAACTCAAGGCCAAAATTAGTCC 59.874 44.000 5.01 0.00 0.00 3.85
1900 4024 5.944007 TCCTAACTCAAGGCCAAAATTAGTC 59.056 40.000 5.01 0.00 36.51 2.59
1901 4025 5.887754 TCCTAACTCAAGGCCAAAATTAGT 58.112 37.500 5.01 0.00 36.51 2.24
1902 4026 6.834168 TTCCTAACTCAAGGCCAAAATTAG 57.166 37.500 5.01 6.19 36.51 1.73
1903 4027 7.790782 AATTCCTAACTCAAGGCCAAAATTA 57.209 32.000 5.01 0.00 36.51 1.40
1904 4028 6.686484 AATTCCTAACTCAAGGCCAAAATT 57.314 33.333 5.01 0.00 36.51 1.82
1905 4029 6.686484 AAATTCCTAACTCAAGGCCAAAAT 57.314 33.333 5.01 0.00 36.51 1.82
1906 4030 7.604657 TTAAATTCCTAACTCAAGGCCAAAA 57.395 32.000 5.01 0.00 36.51 2.44
1907 4031 7.604657 TTTAAATTCCTAACTCAAGGCCAAA 57.395 32.000 5.01 0.00 36.51 3.28
1908 4032 7.790782 ATTTAAATTCCTAACTCAAGGCCAA 57.209 32.000 5.01 0.00 36.51 4.52
1909 4033 7.453126 TGAATTTAAATTCCTAACTCAAGGCCA 59.547 33.333 29.31 10.52 43.19 5.36
1910 4034 7.759886 GTGAATTTAAATTCCTAACTCAAGGCC 59.240 37.037 29.31 0.00 43.19 5.19
1911 4035 8.523658 AGTGAATTTAAATTCCTAACTCAAGGC 58.476 33.333 29.31 8.79 43.19 4.35
1912 4036 9.846248 CAGTGAATTTAAATTCCTAACTCAAGG 57.154 33.333 29.31 15.01 43.19 3.61
1913 4037 9.346725 GCAGTGAATTTAAATTCCTAACTCAAG 57.653 33.333 29.31 18.09 43.19 3.02
1914 4038 8.855110 TGCAGTGAATTTAAATTCCTAACTCAA 58.145 29.630 29.31 16.85 43.19 3.02
1915 4039 8.402798 TGCAGTGAATTTAAATTCCTAACTCA 57.597 30.769 29.31 21.89 43.19 3.41
1916 4040 9.860898 ATTGCAGTGAATTTAAATTCCTAACTC 57.139 29.630 29.31 20.39 43.19 3.01
1917 4041 9.643693 CATTGCAGTGAATTTAAATTCCTAACT 57.356 29.630 29.31 24.00 43.19 2.24
1918 4042 8.382875 GCATTGCAGTGAATTTAAATTCCTAAC 58.617 33.333 29.31 22.61 43.19 2.34
1919 4043 8.313292 AGCATTGCAGTGAATTTAAATTCCTAA 58.687 29.630 29.31 19.59 43.19 2.69
1920 4044 7.839907 AGCATTGCAGTGAATTTAAATTCCTA 58.160 30.769 29.31 15.13 43.19 2.94
1921 4045 6.704310 AGCATTGCAGTGAATTTAAATTCCT 58.296 32.000 29.31 23.52 43.19 3.36
1922 4046 6.973229 AGCATTGCAGTGAATTTAAATTCC 57.027 33.333 29.31 22.15 43.19 3.01
1923 4047 8.915871 TCTAGCATTGCAGTGAATTTAAATTC 57.084 30.769 27.02 27.02 43.91 2.17
1924 4048 9.362539 CTTCTAGCATTGCAGTGAATTTAAATT 57.637 29.630 14.15 13.24 0.00 1.82
1925 4049 8.526147 ACTTCTAGCATTGCAGTGAATTTAAAT 58.474 29.630 14.15 0.00 0.00 1.40
1926 4050 7.885297 ACTTCTAGCATTGCAGTGAATTTAAA 58.115 30.769 14.15 0.00 0.00 1.52
1927 4051 7.452880 ACTTCTAGCATTGCAGTGAATTTAA 57.547 32.000 14.15 0.00 0.00 1.52
1928 4052 7.201522 CGTACTTCTAGCATTGCAGTGAATTTA 60.202 37.037 14.15 0.00 0.00 1.40
1929 4053 5.972107 ACTTCTAGCATTGCAGTGAATTT 57.028 34.783 14.15 0.00 0.00 1.82
1930 4054 5.063944 CGTACTTCTAGCATTGCAGTGAATT 59.936 40.000 14.15 8.44 0.00 2.17
1931 4055 4.568359 CGTACTTCTAGCATTGCAGTGAAT 59.432 41.667 14.15 3.00 0.00 2.57
1932 4056 3.926527 CGTACTTCTAGCATTGCAGTGAA 59.073 43.478 14.15 10.39 0.00 3.18
1933 4057 3.056821 ACGTACTTCTAGCATTGCAGTGA 60.057 43.478 14.15 2.93 0.00 3.41
1934 4058 3.254060 ACGTACTTCTAGCATTGCAGTG 58.746 45.455 11.91 4.57 0.00 3.66
1935 4059 3.594603 ACGTACTTCTAGCATTGCAGT 57.405 42.857 11.91 7.93 0.00 4.40
1936 4060 3.679980 ACAACGTACTTCTAGCATTGCAG 59.320 43.478 11.91 6.59 0.00 4.41
1937 4061 3.659786 ACAACGTACTTCTAGCATTGCA 58.340 40.909 11.91 0.00 0.00 4.08
1938 4062 4.663636 AACAACGTACTTCTAGCATTGC 57.336 40.909 0.00 0.00 0.00 3.56
1939 4063 5.845953 CACAAACAACGTACTTCTAGCATTG 59.154 40.000 0.00 0.00 0.00 2.82
1940 4064 5.526111 ACACAAACAACGTACTTCTAGCATT 59.474 36.000 0.00 0.00 0.00 3.56
1941 4065 5.054477 ACACAAACAACGTACTTCTAGCAT 58.946 37.500 0.00 0.00 0.00 3.79
1942 4066 4.435425 ACACAAACAACGTACTTCTAGCA 58.565 39.130 0.00 0.00 0.00 3.49
1943 4067 5.689068 AGTACACAAACAACGTACTTCTAGC 59.311 40.000 0.00 0.00 42.37 3.42
1944 4068 8.847567 CATAGTACACAAACAACGTACTTCTAG 58.152 37.037 6.75 0.00 42.37 2.43
1945 4069 8.352201 ACATAGTACACAAACAACGTACTTCTA 58.648 33.333 6.75 0.00 42.37 2.10
1946 4070 7.168637 CACATAGTACACAAACAACGTACTTCT 59.831 37.037 6.75 0.00 42.37 2.85
1947 4071 7.043192 ACACATAGTACACAAACAACGTACTTC 60.043 37.037 6.75 0.00 42.37 3.01
1948 4072 6.757947 ACACATAGTACACAAACAACGTACTT 59.242 34.615 6.75 0.00 42.37 2.24
1949 4073 6.199531 CACACATAGTACACAAACAACGTACT 59.800 38.462 6.67 6.67 45.78 2.73
1950 4074 6.349426 CACACATAGTACACAAACAACGTAC 58.651 40.000 0.00 0.00 36.57 3.67
1951 4075 5.462729 CCACACATAGTACACAAACAACGTA 59.537 40.000 0.00 0.00 0.00 3.57
1952 4076 4.271533 CCACACATAGTACACAAACAACGT 59.728 41.667 0.00 0.00 0.00 3.99
1953 4077 4.271533 ACCACACATAGTACACAAACAACG 59.728 41.667 0.00 0.00 0.00 4.10
1954 4078 5.504994 CCACCACACATAGTACACAAACAAC 60.505 44.000 0.00 0.00 0.00 3.32
1955 4079 4.576873 CCACCACACATAGTACACAAACAA 59.423 41.667 0.00 0.00 0.00 2.83
1956 4080 4.130857 CCACCACACATAGTACACAAACA 58.869 43.478 0.00 0.00 0.00 2.83
1957 4081 3.500680 CCCACCACACATAGTACACAAAC 59.499 47.826 0.00 0.00 0.00 2.93
1958 4082 3.497048 CCCCACCACACATAGTACACAAA 60.497 47.826 0.00 0.00 0.00 2.83
1959 4083 2.039216 CCCCACCACACATAGTACACAA 59.961 50.000 0.00 0.00 0.00 3.33
1960 4084 1.626321 CCCCACCACACATAGTACACA 59.374 52.381 0.00 0.00 0.00 3.72
1961 4085 1.677820 GCCCCACCACACATAGTACAC 60.678 57.143 0.00 0.00 0.00 2.90
1962 4086 0.616371 GCCCCACCACACATAGTACA 59.384 55.000 0.00 0.00 0.00 2.90
1963 4087 0.909623 AGCCCCACCACACATAGTAC 59.090 55.000 0.00 0.00 0.00 2.73
1964 4088 1.200519 GAGCCCCACCACACATAGTA 58.799 55.000 0.00 0.00 0.00 1.82
1965 4089 0.840288 TGAGCCCCACCACACATAGT 60.840 55.000 0.00 0.00 0.00 2.12
1966 4090 0.392998 GTGAGCCCCACCACACATAG 60.393 60.000 0.00 0.00 39.86 2.23
1967 4091 1.682849 GTGAGCCCCACCACACATA 59.317 57.895 0.00 0.00 39.86 2.29
1968 4092 2.436109 GTGAGCCCCACCACACAT 59.564 61.111 0.00 0.00 39.86 3.21
1969 4093 4.248842 CGTGAGCCCCACCACACA 62.249 66.667 0.00 0.00 42.76 3.72
1981 4105 2.125753 GCCAGGACTGAGCGTGAG 60.126 66.667 0.00 0.00 0.00 3.51
1982 4106 3.695606 GGCCAGGACTGAGCGTGA 61.696 66.667 0.00 0.00 0.00 4.35
1983 4107 3.320879 ATGGCCAGGACTGAGCGTG 62.321 63.158 13.05 0.00 0.00 5.34
1984 4108 3.005539 ATGGCCAGGACTGAGCGT 61.006 61.111 13.05 0.00 0.00 5.07
1985 4109 2.513204 CATGGCCAGGACTGAGCG 60.513 66.667 13.35 0.00 0.00 5.03
1986 4110 2.124403 CCATGGCCAGGACTGAGC 60.124 66.667 21.32 2.84 0.00 4.26
1987 4111 1.565390 TTCCCATGGCCAGGACTGAG 61.565 60.000 21.32 0.00 0.00 3.35
1988 4112 1.541118 TTCCCATGGCCAGGACTGA 60.541 57.895 21.32 9.59 0.00 3.41
1989 4113 1.077212 CTTCCCATGGCCAGGACTG 60.077 63.158 21.32 8.21 0.00 3.51
1990 4114 2.988839 GCTTCCCATGGCCAGGACT 61.989 63.158 21.32 0.00 0.00 3.85
1991 4115 2.440980 GCTTCCCATGGCCAGGAC 60.441 66.667 21.32 2.25 0.00 3.85
1992 4116 3.743017 GGCTTCCCATGGCCAGGA 61.743 66.667 21.32 15.01 46.84 3.86
2018 4142 2.994995 GGGTTGGGCCTTTTCGGG 60.995 66.667 4.53 0.00 37.43 5.14
2019 4143 3.370231 CGGGTTGGGCCTTTTCGG 61.370 66.667 4.53 0.00 37.43 4.30
2020 4144 3.370231 CCGGGTTGGGCCTTTTCG 61.370 66.667 4.53 3.98 37.43 3.46
2037 4161 1.685148 CTCAAAATCTAGGGCCAGGC 58.315 55.000 6.18 1.26 0.00 4.85
2038 4162 1.685148 GCTCAAAATCTAGGGCCAGG 58.315 55.000 6.18 0.00 0.00 4.45
2039 4163 1.685148 GGCTCAAAATCTAGGGCCAG 58.315 55.000 6.18 0.85 39.38 4.85
2040 4164 0.258774 GGGCTCAAAATCTAGGGCCA 59.741 55.000 6.18 0.00 41.12 5.36
2041 4165 0.819666 CGGGCTCAAAATCTAGGGCC 60.820 60.000 0.00 0.00 38.92 5.80
2042 4166 0.180406 TCGGGCTCAAAATCTAGGGC 59.820 55.000 0.00 0.00 0.00 5.19
2043 4167 2.498167 CATCGGGCTCAAAATCTAGGG 58.502 52.381 0.00 0.00 0.00 3.53
2044 4168 2.498167 CCATCGGGCTCAAAATCTAGG 58.502 52.381 0.00 0.00 0.00 3.02
2071 4195 4.032987 CAAAAACGACGGGCCCGG 62.033 66.667 44.99 31.45 44.69 5.73
2072 4196 4.693525 GCAAAAACGACGGGCCCG 62.694 66.667 42.17 42.17 46.03 6.13
2073 4197 4.693525 CGCAAAAACGACGGGCCC 62.694 66.667 13.57 13.57 34.06 5.80
2074 4198 2.940250 AAACGCAAAAACGACGGGCC 62.940 55.000 0.00 0.00 36.70 5.80
2075 4199 1.140999 AAAACGCAAAAACGACGGGC 61.141 50.000 0.00 0.00 36.70 6.13
2076 4200 1.253289 GAAAAACGCAAAAACGACGGG 59.747 47.619 0.00 0.00 36.70 5.28
2077 4201 1.073308 CGAAAAACGCAAAAACGACGG 60.073 47.619 0.00 0.00 36.70 4.79
2078 4202 1.073308 CCGAAAAACGCAAAAACGACG 60.073 47.619 0.00 0.00 41.07 5.12
2079 4203 2.175566 TCCGAAAAACGCAAAAACGAC 58.824 42.857 0.00 0.00 41.07 4.34
2080 4204 2.539346 TCCGAAAAACGCAAAAACGA 57.461 40.000 0.00 0.00 41.07 3.85
2081 4205 2.847133 TCTTCCGAAAAACGCAAAAACG 59.153 40.909 0.00 0.00 41.07 3.60
2082 4206 3.242016 CCTCTTCCGAAAAACGCAAAAAC 59.758 43.478 0.00 0.00 41.07 2.43
2083 4207 3.440228 CCTCTTCCGAAAAACGCAAAAA 58.560 40.909 0.00 0.00 41.07 1.94
2084 4208 2.796735 GCCTCTTCCGAAAAACGCAAAA 60.797 45.455 0.00 0.00 41.07 2.44
2085 4209 1.268845 GCCTCTTCCGAAAAACGCAAA 60.269 47.619 0.00 0.00 41.07 3.68
2086 4210 0.309612 GCCTCTTCCGAAAAACGCAA 59.690 50.000 0.00 0.00 41.07 4.85
2087 4211 1.512156 GGCCTCTTCCGAAAAACGCA 61.512 55.000 0.00 0.00 41.07 5.24
2088 4212 1.209383 GGCCTCTTCCGAAAAACGC 59.791 57.895 0.00 0.00 41.07 4.84
2089 4213 1.873863 GGGCCTCTTCCGAAAAACG 59.126 57.895 0.84 0.00 42.18 3.60
2118 4242 1.591504 AACGCATAAAAGCCCACCGG 61.592 55.000 0.00 0.00 0.00 5.28
2119 4243 0.179174 GAACGCATAAAAGCCCACCG 60.179 55.000 0.00 0.00 0.00 4.94
2120 4244 0.179174 CGAACGCATAAAAGCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
2121 4245 0.179174 CCGAACGCATAAAAGCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
2122 4246 1.309499 CCCGAACGCATAAAAGCCCA 61.309 55.000 0.00 0.00 0.00 5.36
2123 4247 1.310216 ACCCGAACGCATAAAAGCCC 61.310 55.000 0.00 0.00 0.00 5.19
2124 4248 0.524414 AACCCGAACGCATAAAAGCC 59.476 50.000 0.00 0.00 0.00 4.35
2125 4249 1.613270 CAACCCGAACGCATAAAAGC 58.387 50.000 0.00 0.00 0.00 3.51
2126 4250 1.731098 GCCAACCCGAACGCATAAAAG 60.731 52.381 0.00 0.00 0.00 2.27
2127 4251 0.241481 GCCAACCCGAACGCATAAAA 59.759 50.000 0.00 0.00 0.00 1.52
2128 4252 1.587933 GGCCAACCCGAACGCATAAA 61.588 55.000 0.00 0.00 0.00 1.40
2129 4253 2.041686 GGCCAACCCGAACGCATAA 61.042 57.895 0.00 0.00 0.00 1.90
2130 4254 2.437002 GGCCAACCCGAACGCATA 60.437 61.111 0.00 0.00 0.00 3.14
2131 4255 3.860930 AAGGCCAACCCGAACGCAT 62.861 57.895 5.01 0.00 39.21 4.73
2132 4256 4.572571 AAGGCCAACCCGAACGCA 62.573 61.111 5.01 0.00 39.21 5.24
2133 4257 4.038080 CAAGGCCAACCCGAACGC 62.038 66.667 5.01 0.00 39.21 4.84
2134 4258 3.361977 CCAAGGCCAACCCGAACG 61.362 66.667 5.01 0.00 39.21 3.95
2135 4259 2.989253 CCCAAGGCCAACCCGAAC 60.989 66.667 5.01 0.00 39.21 3.95
2136 4260 4.986708 GCCCAAGGCCAACCCGAA 62.987 66.667 5.01 0.00 44.06 4.30
2146 4270 1.754107 CTGGTTTTTGGGCCCAAGG 59.246 57.895 35.02 18.32 37.24 3.61
2147 4271 1.754107 CCTGGTTTTTGGGCCCAAG 59.246 57.895 35.02 23.09 37.24 3.61
2148 4272 2.447714 GCCTGGTTTTTGGGCCCAA 61.448 57.895 34.07 34.07 39.96 4.12
2149 4273 2.846754 GCCTGGTTTTTGGGCCCA 60.847 61.111 24.45 24.45 39.96 5.36
2152 4276 4.002506 CGGGCCTGGTTTTTGGGC 62.003 66.667 2.57 0.00 46.59 5.36
2153 4277 1.609210 ATCGGGCCTGGTTTTTGGG 60.609 57.895 12.87 0.00 0.00 4.12
2154 4278 1.591183 CATCGGGCCTGGTTTTTGG 59.409 57.895 12.87 0.00 0.00 3.28
2155 4279 1.591183 CCATCGGGCCTGGTTTTTG 59.409 57.895 12.87 2.29 0.00 2.44
2156 4280 4.111967 CCATCGGGCCTGGTTTTT 57.888 55.556 12.87 0.00 0.00 1.94
2183 4307 4.865629 AAAAACCTAGGCCCAGGC 57.134 55.556 18.25 0.00 39.53 4.85
2204 4328 3.329542 TAGCCAAGCCAAGCCCGAG 62.330 63.158 0.00 0.00 0.00 4.63
2205 4329 3.326578 TAGCCAAGCCAAGCCCGA 61.327 61.111 0.00 0.00 0.00 5.14
2206 4330 2.825836 CTAGCCAAGCCAAGCCCG 60.826 66.667 0.00 0.00 0.00 6.13
2207 4331 2.440980 CCTAGCCAAGCCAAGCCC 60.441 66.667 0.00 0.00 0.00 5.19
2208 4332 3.143515 GCCTAGCCAAGCCAAGCC 61.144 66.667 0.00 0.00 0.00 4.35
2249 4373 0.468029 ACTCACCTGGCCAAACCTTG 60.468 55.000 7.01 0.00 40.22 3.61
2250 4374 0.178990 GACTCACCTGGCCAAACCTT 60.179 55.000 7.01 0.00 40.22 3.50
2251 4375 1.352622 TGACTCACCTGGCCAAACCT 61.353 55.000 7.01 0.00 40.22 3.50
2252 4376 1.150536 TGACTCACCTGGCCAAACC 59.849 57.895 7.01 0.00 39.84 3.27
2253 4377 1.507141 CGTGACTCACCTGGCCAAAC 61.507 60.000 7.01 0.00 0.00 2.93
2254 4378 1.227823 CGTGACTCACCTGGCCAAA 60.228 57.895 7.01 0.00 0.00 3.28
2255 4379 2.425592 CGTGACTCACCTGGCCAA 59.574 61.111 7.01 0.00 0.00 4.52
2256 4380 4.314440 GCGTGACTCACCTGGCCA 62.314 66.667 4.71 4.71 0.00 5.36
2257 4381 4.008933 AGCGTGACTCACCTGGCC 62.009 66.667 0.00 0.00 0.00 5.36
2258 4382 2.740055 CAGCGTGACTCACCTGGC 60.740 66.667 15.02 8.78 32.82 4.85
2259 4383 1.665916 CACAGCGTGACTCACCTGG 60.666 63.158 21.82 12.72 37.15 4.45
2260 4384 0.530650 AACACAGCGTGACTCACCTG 60.531 55.000 18.69 18.69 38.05 4.00
2261 4385 0.249489 GAACACAGCGTGACTCACCT 60.249 55.000 14.18 0.00 36.96 4.00
2262 4386 1.548973 CGAACACAGCGTGACTCACC 61.549 60.000 14.18 0.00 36.96 4.02
2263 4387 1.846648 CGAACACAGCGTGACTCAC 59.153 57.895 14.18 0.00 36.96 3.51
2264 4388 4.319249 CGAACACAGCGTGACTCA 57.681 55.556 14.18 0.00 36.96 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.