Multiple sequence alignment - TraesCS2D01G452600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G452600 chr2D 100.000 2549 0 0 1 2549 561936361 561933813 0.000000e+00 4708.0
1 TraesCS2D01G452600 chr2D 78.049 246 50 4 1054 1297 580003863 580003620 4.390000e-33 152.0
2 TraesCS2D01G452600 chr2D 92.157 51 3 1 810 859 561927626 561927576 1.270000e-08 71.3
3 TraesCS2D01G452600 chr2A 84.554 1379 141 37 621 1972 702194489 702193156 0.000000e+00 1301.0
4 TraesCS2D01G452600 chr2A 90.722 291 20 3 518 807 702194516 702194232 5.150000e-102 381.0
5 TraesCS2D01G452600 chr2A 91.748 206 15 1 2344 2549 702192652 702192449 4.150000e-73 285.0
6 TraesCS2D01G452600 chr2A 82.067 329 40 9 2024 2342 702193047 702192728 1.940000e-66 263.0
7 TraesCS2D01G452600 chr2A 77.733 247 49 6 1054 1297 717878439 717878196 2.040000e-31 147.0
8 TraesCS2D01G452600 chr2B 88.866 952 61 19 887 1806 671213837 671212899 0.000000e+00 1129.0
9 TraesCS2D01G452600 chr2B 84.135 208 27 4 1796 2000 671212712 671212508 2.000000e-46 196.0
10 TraesCS2D01G452600 chr2B 88.435 147 10 2 2410 2549 671212499 671212353 1.210000e-38 171.0
11 TraesCS2D01G452600 chr2B 89.157 83 2 3 1 83 671393625 671393550 2.090000e-16 97.1
12 TraesCS2D01G452600 chr2B 91.071 56 5 0 2410 2465 671239277 671239222 2.720000e-10 76.8
13 TraesCS2D01G452600 chr5B 81.122 196 33 3 2028 2219 572134908 572134713 1.220000e-33 154.0
14 TraesCS2D01G452600 chr7B 96.825 63 2 0 2416 2478 4201124 4201186 3.470000e-19 106.0
15 TraesCS2D01G452600 chr6D 89.831 59 6 0 2416 2474 427229228 427229286 2.720000e-10 76.8
16 TraesCS2D01G452600 chr6B 86.275 51 5 2 525 574 164040172 164040221 1.000000e-03 54.7
17 TraesCS2D01G452600 chr7A 96.875 32 0 1 525 556 19784126 19784156 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G452600 chr2D 561933813 561936361 2548 True 4708.000000 4708 100.000000 1 2549 1 chr2D.!!$R2 2548
1 TraesCS2D01G452600 chr2A 702192449 702194516 2067 True 557.500000 1301 87.272750 518 2549 4 chr2A.!!$R2 2031
2 TraesCS2D01G452600 chr2B 671212353 671213837 1484 True 498.666667 1129 87.145333 887 2549 3 chr2B.!!$R3 1662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.035152 TTCCTCGTTGCATGCATCCT 60.035 50.0 23.37 0.0 0.0 3.24 F
261 262 0.038310 TCTCGTCTCTCCCAGCAGAA 59.962 55.0 0.00 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1253 0.103937 CCTCTGCTCGGGTCATCTTC 59.896 60.0 0.0 0.0 0.00 2.87 R
2141 2449 0.102663 TGACCGTTTGCGACTGTACA 59.897 50.0 0.0 0.0 41.33 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.752879 TGCTCCCGCAACCTACGC 62.753 66.667 0.00 0.00 44.62 4.42
20 21 4.452733 GCTCCCGCAACCTACGCT 62.453 66.667 0.00 0.00 35.78 5.07
21 22 2.202756 CTCCCGCAACCTACGCTC 60.203 66.667 0.00 0.00 0.00 5.03
22 23 4.124351 TCCCGCAACCTACGCTCG 62.124 66.667 0.00 0.00 0.00 5.03
25 26 4.430765 CGCAACCTACGCTCGGGT 62.431 66.667 0.00 0.00 37.44 5.28
26 27 2.047560 GCAACCTACGCTCGGGTT 60.048 61.111 0.00 0.00 45.48 4.11
27 28 1.216178 GCAACCTACGCTCGGGTTA 59.784 57.895 0.00 0.00 43.09 2.85
28 29 1.080435 GCAACCTACGCTCGGGTTAC 61.080 60.000 0.00 0.00 43.09 2.50
29 30 0.529378 CAACCTACGCTCGGGTTACT 59.471 55.000 0.00 0.00 43.09 2.24
30 31 0.529378 AACCTACGCTCGGGTTACTG 59.471 55.000 0.00 0.00 43.13 2.74
31 32 0.610232 ACCTACGCTCGGGTTACTGT 60.610 55.000 0.00 0.00 30.80 3.55
32 33 0.529378 CCTACGCTCGGGTTACTGTT 59.471 55.000 0.00 0.00 0.00 3.16
33 34 1.745087 CCTACGCTCGGGTTACTGTTA 59.255 52.381 0.00 0.00 0.00 2.41
34 35 2.478539 CCTACGCTCGGGTTACTGTTAC 60.479 54.545 0.00 0.00 0.00 2.50
35 36 1.251251 ACGCTCGGGTTACTGTTACT 58.749 50.000 0.00 0.00 0.00 2.24
36 37 1.200948 ACGCTCGGGTTACTGTTACTC 59.799 52.381 0.00 0.00 0.00 2.59
37 38 1.471684 CGCTCGGGTTACTGTTACTCT 59.528 52.381 0.00 0.00 0.00 3.24
38 39 2.094854 CGCTCGGGTTACTGTTACTCTT 60.095 50.000 0.00 0.00 0.00 2.85
39 40 3.613432 CGCTCGGGTTACTGTTACTCTTT 60.613 47.826 0.00 0.00 0.00 2.52
40 41 3.925299 GCTCGGGTTACTGTTACTCTTTC 59.075 47.826 0.00 0.00 0.00 2.62
41 42 4.492611 CTCGGGTTACTGTTACTCTTTCC 58.507 47.826 0.00 0.00 0.00 3.13
42 43 3.057315 TCGGGTTACTGTTACTCTTTCCG 60.057 47.826 5.58 5.58 35.65 4.30
43 44 3.305608 CGGGTTACTGTTACTCTTTCCGT 60.306 47.826 0.00 0.00 0.00 4.69
44 45 4.240888 GGGTTACTGTTACTCTTTCCGTC 58.759 47.826 0.00 0.00 0.00 4.79
45 46 4.262164 GGGTTACTGTTACTCTTTCCGTCA 60.262 45.833 0.00 0.00 0.00 4.35
46 47 4.922103 GGTTACTGTTACTCTTTCCGTCAG 59.078 45.833 0.00 0.00 0.00 3.51
47 48 5.508657 GGTTACTGTTACTCTTTCCGTCAGT 60.509 44.000 0.00 0.00 38.10 3.41
48 49 4.667519 ACTGTTACTCTTTCCGTCAGTT 57.332 40.909 0.00 0.00 31.95 3.16
49 50 5.019785 ACTGTTACTCTTTCCGTCAGTTT 57.980 39.130 0.00 0.00 31.95 2.66
50 51 6.152932 ACTGTTACTCTTTCCGTCAGTTTA 57.847 37.500 0.00 0.00 31.95 2.01
51 52 6.756221 ACTGTTACTCTTTCCGTCAGTTTAT 58.244 36.000 0.00 0.00 31.95 1.40
52 53 7.215085 ACTGTTACTCTTTCCGTCAGTTTATT 58.785 34.615 0.00 0.00 31.95 1.40
53 54 7.384387 ACTGTTACTCTTTCCGTCAGTTTATTC 59.616 37.037 0.00 0.00 31.95 1.75
54 55 6.647895 TGTTACTCTTTCCGTCAGTTTATTCC 59.352 38.462 0.00 0.00 0.00 3.01
55 56 5.485209 ACTCTTTCCGTCAGTTTATTCCT 57.515 39.130 0.00 0.00 0.00 3.36
56 57 5.866207 ACTCTTTCCGTCAGTTTATTCCTT 58.134 37.500 0.00 0.00 0.00 3.36
57 58 6.296803 ACTCTTTCCGTCAGTTTATTCCTTT 58.703 36.000 0.00 0.00 0.00 3.11
58 59 6.427242 ACTCTTTCCGTCAGTTTATTCCTTTC 59.573 38.462 0.00 0.00 0.00 2.62
59 60 5.704053 TCTTTCCGTCAGTTTATTCCTTTCC 59.296 40.000 0.00 0.00 0.00 3.13
60 61 4.903045 TCCGTCAGTTTATTCCTTTCCT 57.097 40.909 0.00 0.00 0.00 3.36
61 62 4.828829 TCCGTCAGTTTATTCCTTTCCTC 58.171 43.478 0.00 0.00 0.00 3.71
62 63 3.617263 CCGTCAGTTTATTCCTTTCCTCG 59.383 47.826 0.00 0.00 0.00 4.63
63 64 4.243270 CGTCAGTTTATTCCTTTCCTCGT 58.757 43.478 0.00 0.00 0.00 4.18
64 65 4.689345 CGTCAGTTTATTCCTTTCCTCGTT 59.311 41.667 0.00 0.00 0.00 3.85
65 66 5.389516 CGTCAGTTTATTCCTTTCCTCGTTG 60.390 44.000 0.00 0.00 0.00 4.10
66 67 4.454504 TCAGTTTATTCCTTTCCTCGTTGC 59.545 41.667 0.00 0.00 0.00 4.17
67 68 4.215399 CAGTTTATTCCTTTCCTCGTTGCA 59.785 41.667 0.00 0.00 0.00 4.08
68 69 5.010282 AGTTTATTCCTTTCCTCGTTGCAT 58.990 37.500 0.00 0.00 0.00 3.96
69 70 4.963276 TTATTCCTTTCCTCGTTGCATG 57.037 40.909 0.00 0.00 0.00 4.06
70 71 0.881118 TTCCTTTCCTCGTTGCATGC 59.119 50.000 11.82 11.82 0.00 4.06
71 72 0.250684 TCCTTTCCTCGTTGCATGCA 60.251 50.000 18.46 18.46 0.00 3.96
72 73 0.813184 CCTTTCCTCGTTGCATGCAT 59.187 50.000 23.37 0.00 0.00 3.96
73 74 1.202222 CCTTTCCTCGTTGCATGCATC 60.202 52.381 23.37 19.85 0.00 3.91
74 75 0.810648 TTTCCTCGTTGCATGCATCC 59.189 50.000 23.37 14.24 0.00 3.51
75 76 0.035152 TTCCTCGTTGCATGCATCCT 60.035 50.000 23.37 0.00 0.00 3.24
76 77 0.035152 TCCTCGTTGCATGCATCCTT 60.035 50.000 23.37 0.00 0.00 3.36
77 78 1.209261 TCCTCGTTGCATGCATCCTTA 59.791 47.619 23.37 2.36 0.00 2.69
78 79 2.016318 CCTCGTTGCATGCATCCTTAA 58.984 47.619 23.37 1.46 0.00 1.85
79 80 2.423185 CCTCGTTGCATGCATCCTTAAA 59.577 45.455 23.37 0.58 0.00 1.52
80 81 3.067180 CCTCGTTGCATGCATCCTTAAAT 59.933 43.478 23.37 0.00 0.00 1.40
81 82 4.440525 CCTCGTTGCATGCATCCTTAAATT 60.441 41.667 23.37 0.00 0.00 1.82
82 83 5.221028 CCTCGTTGCATGCATCCTTAAATTA 60.221 40.000 23.37 0.00 0.00 1.40
83 84 5.820131 TCGTTGCATGCATCCTTAAATTAG 58.180 37.500 23.37 4.80 0.00 1.73
84 85 5.588246 TCGTTGCATGCATCCTTAAATTAGA 59.412 36.000 23.37 7.12 0.00 2.10
85 86 5.682862 CGTTGCATGCATCCTTAAATTAGAC 59.317 40.000 23.37 10.62 0.00 2.59
86 87 5.772825 TGCATGCATCCTTAAATTAGACC 57.227 39.130 18.46 0.00 0.00 3.85
87 88 5.448654 TGCATGCATCCTTAAATTAGACCT 58.551 37.500 18.46 0.00 0.00 3.85
88 89 5.532406 TGCATGCATCCTTAAATTAGACCTC 59.468 40.000 18.46 0.00 0.00 3.85
89 90 5.048434 GCATGCATCCTTAAATTAGACCTCC 60.048 44.000 14.21 0.00 0.00 4.30
90 91 5.975988 TGCATCCTTAAATTAGACCTCCT 57.024 39.130 0.00 0.00 0.00 3.69
91 92 5.930135 TGCATCCTTAAATTAGACCTCCTC 58.070 41.667 0.00 0.00 0.00 3.71
92 93 5.428457 TGCATCCTTAAATTAGACCTCCTCA 59.572 40.000 0.00 0.00 0.00 3.86
93 94 5.760743 GCATCCTTAAATTAGACCTCCTCAC 59.239 44.000 0.00 0.00 0.00 3.51
94 95 5.593679 TCCTTAAATTAGACCTCCTCACG 57.406 43.478 0.00 0.00 0.00 4.35
95 96 4.120589 CCTTAAATTAGACCTCCTCACGC 58.879 47.826 0.00 0.00 0.00 5.34
96 97 2.295253 AAATTAGACCTCCTCACGCG 57.705 50.000 3.53 3.53 0.00 6.01
97 98 0.179108 AATTAGACCTCCTCACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
98 99 2.337749 ATTAGACCTCCTCACGCGCG 62.338 60.000 30.96 30.96 0.00 6.86
139 140 3.535691 CGCTACCGCAAAACAAACA 57.464 47.368 0.00 0.00 35.30 2.83
140 141 1.394697 CGCTACCGCAAAACAAACAG 58.605 50.000 0.00 0.00 35.30 3.16
141 142 1.766069 GCTACCGCAAAACAAACAGG 58.234 50.000 0.00 0.00 35.78 4.00
142 143 1.766069 CTACCGCAAAACAAACAGGC 58.234 50.000 0.00 0.00 0.00 4.85
143 144 1.066303 CTACCGCAAAACAAACAGGCA 59.934 47.619 0.00 0.00 0.00 4.75
144 145 0.459411 ACCGCAAAACAAACAGGCAC 60.459 50.000 0.00 0.00 0.00 5.01
145 146 1.478622 CCGCAAAACAAACAGGCACG 61.479 55.000 0.00 0.00 0.00 5.34
146 147 1.478622 CGCAAAACAAACAGGCACGG 61.479 55.000 0.00 0.00 0.00 4.94
147 148 1.151172 GCAAAACAAACAGGCACGGG 61.151 55.000 0.00 0.00 0.00 5.28
148 149 0.529555 CAAAACAAACAGGCACGGGG 60.530 55.000 0.00 0.00 0.00 5.73
149 150 2.304901 AAAACAAACAGGCACGGGGC 62.305 55.000 1.25 1.25 43.74 5.80
152 153 3.943691 AAACAGGCACGGGGCGTA 61.944 61.111 5.22 0.00 46.16 4.42
153 154 4.692475 AACAGGCACGGGGCGTAC 62.692 66.667 5.22 0.00 46.16 3.67
161 162 4.487412 CGGGGCGTACGTGAGGTC 62.487 72.222 17.90 0.00 0.00 3.85
162 163 3.376078 GGGGCGTACGTGAGGTCA 61.376 66.667 17.90 0.00 0.00 4.02
163 164 2.652530 GGGCGTACGTGAGGTCAA 59.347 61.111 17.90 0.00 0.00 3.18
164 165 1.735559 GGGCGTACGTGAGGTCAAC 60.736 63.158 17.90 0.00 0.00 3.18
165 166 1.007038 GGCGTACGTGAGGTCAACA 60.007 57.895 17.90 0.00 0.00 3.33
166 167 0.389426 GGCGTACGTGAGGTCAACAT 60.389 55.000 17.90 0.00 0.00 2.71
167 168 0.713883 GCGTACGTGAGGTCAACATG 59.286 55.000 17.90 0.00 0.00 3.21
168 169 1.667756 GCGTACGTGAGGTCAACATGA 60.668 52.381 17.90 0.00 0.00 3.07
169 170 1.983605 CGTACGTGAGGTCAACATGAC 59.016 52.381 7.22 1.88 46.23 3.06
178 179 2.363788 GTCAACATGACGCCTACTCA 57.636 50.000 0.00 0.00 37.67 3.41
179 180 2.683968 GTCAACATGACGCCTACTCAA 58.316 47.619 0.00 0.00 37.67 3.02
180 181 3.262420 GTCAACATGACGCCTACTCAAT 58.738 45.455 0.00 0.00 37.67 2.57
181 182 3.684788 GTCAACATGACGCCTACTCAATT 59.315 43.478 0.00 0.00 37.67 2.32
182 183 3.932710 TCAACATGACGCCTACTCAATTC 59.067 43.478 0.00 0.00 0.00 2.17
183 184 3.610040 ACATGACGCCTACTCAATTCA 57.390 42.857 0.00 0.00 0.00 2.57
184 185 4.142609 ACATGACGCCTACTCAATTCAT 57.857 40.909 0.00 0.00 0.00 2.57
185 186 4.517285 ACATGACGCCTACTCAATTCATT 58.483 39.130 0.00 0.00 0.00 2.57
186 187 4.943705 ACATGACGCCTACTCAATTCATTT 59.056 37.500 0.00 0.00 0.00 2.32
187 188 5.415701 ACATGACGCCTACTCAATTCATTTT 59.584 36.000 0.00 0.00 0.00 1.82
188 189 5.957842 TGACGCCTACTCAATTCATTTTT 57.042 34.783 0.00 0.00 0.00 1.94
189 190 5.938322 TGACGCCTACTCAATTCATTTTTC 58.062 37.500 0.00 0.00 0.00 2.29
190 191 4.969816 ACGCCTACTCAATTCATTTTTCG 58.030 39.130 0.00 0.00 0.00 3.46
191 192 4.693566 ACGCCTACTCAATTCATTTTTCGA 59.306 37.500 0.00 0.00 0.00 3.71
192 193 5.354234 ACGCCTACTCAATTCATTTTTCGAT 59.646 36.000 0.00 0.00 0.00 3.59
193 194 6.128007 ACGCCTACTCAATTCATTTTTCGATT 60.128 34.615 0.00 0.00 0.00 3.34
194 195 6.412072 CGCCTACTCAATTCATTTTTCGATTC 59.588 38.462 0.00 0.00 0.00 2.52
195 196 7.475840 GCCTACTCAATTCATTTTTCGATTCT 58.524 34.615 0.00 0.00 0.00 2.40
196 197 7.970614 GCCTACTCAATTCATTTTTCGATTCTT 59.029 33.333 0.00 0.00 0.00 2.52
197 198 9.495754 CCTACTCAATTCATTTTTCGATTCTTC 57.504 33.333 0.00 0.00 0.00 2.87
198 199 9.495754 CTACTCAATTCATTTTTCGATTCTTCC 57.504 33.333 0.00 0.00 0.00 3.46
199 200 8.115490 ACTCAATTCATTTTTCGATTCTTCCT 57.885 30.769 0.00 0.00 0.00 3.36
200 201 8.579863 ACTCAATTCATTTTTCGATTCTTCCTT 58.420 29.630 0.00 0.00 0.00 3.36
201 202 8.970691 TCAATTCATTTTTCGATTCTTCCTTC 57.029 30.769 0.00 0.00 0.00 3.46
202 203 7.750458 TCAATTCATTTTTCGATTCTTCCTTCG 59.250 33.333 0.00 0.00 36.72 3.79
203 204 6.554334 TTCATTTTTCGATTCTTCCTTCGT 57.446 33.333 0.00 0.00 36.74 3.85
204 205 6.554334 TCATTTTTCGATTCTTCCTTCGTT 57.446 33.333 0.00 0.00 36.74 3.85
205 206 6.966021 TCATTTTTCGATTCTTCCTTCGTTT 58.034 32.000 0.00 0.00 36.74 3.60
206 207 7.422399 TCATTTTTCGATTCTTCCTTCGTTTT 58.578 30.769 0.00 0.00 36.74 2.43
207 208 7.589954 TCATTTTTCGATTCTTCCTTCGTTTTC 59.410 33.333 0.00 0.00 36.74 2.29
208 209 5.352643 TTTCGATTCTTCCTTCGTTTTCC 57.647 39.130 0.00 0.00 36.74 3.13
209 210 3.332034 TCGATTCTTCCTTCGTTTTCCC 58.668 45.455 0.00 0.00 36.74 3.97
210 211 3.007614 TCGATTCTTCCTTCGTTTTCCCT 59.992 43.478 0.00 0.00 36.74 4.20
211 212 3.751698 CGATTCTTCCTTCGTTTTCCCTT 59.248 43.478 0.00 0.00 0.00 3.95
212 213 4.142881 CGATTCTTCCTTCGTTTTCCCTTC 60.143 45.833 0.00 0.00 0.00 3.46
213 214 4.432980 TTCTTCCTTCGTTTTCCCTTCT 57.567 40.909 0.00 0.00 0.00 2.85
214 215 4.432980 TCTTCCTTCGTTTTCCCTTCTT 57.567 40.909 0.00 0.00 0.00 2.52
215 216 5.556006 TCTTCCTTCGTTTTCCCTTCTTA 57.444 39.130 0.00 0.00 0.00 2.10
216 217 5.932455 TCTTCCTTCGTTTTCCCTTCTTAA 58.068 37.500 0.00 0.00 0.00 1.85
217 218 6.540083 TCTTCCTTCGTTTTCCCTTCTTAAT 58.460 36.000 0.00 0.00 0.00 1.40
218 219 7.002276 TCTTCCTTCGTTTTCCCTTCTTAATT 58.998 34.615 0.00 0.00 0.00 1.40
219 220 8.158789 TCTTCCTTCGTTTTCCCTTCTTAATTA 58.841 33.333 0.00 0.00 0.00 1.40
220 221 8.694581 TTCCTTCGTTTTCCCTTCTTAATTAA 57.305 30.769 0.00 0.00 0.00 1.40
221 222 8.873186 TCCTTCGTTTTCCCTTCTTAATTAAT 57.127 30.769 0.00 0.00 0.00 1.40
222 223 9.304335 TCCTTCGTTTTCCCTTCTTAATTAATT 57.696 29.630 5.89 5.89 0.00 1.40
244 245 7.934855 ATTAATCTTGTCAACTGCAATCTCT 57.065 32.000 0.00 0.00 0.00 3.10
245 246 5.876612 AATCTTGTCAACTGCAATCTCTC 57.123 39.130 0.00 0.00 0.00 3.20
246 247 3.320626 TCTTGTCAACTGCAATCTCTCG 58.679 45.455 0.00 0.00 0.00 4.04
247 248 2.820059 TGTCAACTGCAATCTCTCGT 57.180 45.000 0.00 0.00 0.00 4.18
248 249 2.677199 TGTCAACTGCAATCTCTCGTC 58.323 47.619 0.00 0.00 0.00 4.20
249 250 2.297315 TGTCAACTGCAATCTCTCGTCT 59.703 45.455 0.00 0.00 0.00 4.18
250 251 2.920490 GTCAACTGCAATCTCTCGTCTC 59.080 50.000 0.00 0.00 0.00 3.36
251 252 2.822561 TCAACTGCAATCTCTCGTCTCT 59.177 45.455 0.00 0.00 0.00 3.10
252 253 3.119673 TCAACTGCAATCTCTCGTCTCTC 60.120 47.826 0.00 0.00 0.00 3.20
253 254 1.748493 ACTGCAATCTCTCGTCTCTCC 59.252 52.381 0.00 0.00 0.00 3.71
254 255 1.066908 CTGCAATCTCTCGTCTCTCCC 59.933 57.143 0.00 0.00 0.00 4.30
255 256 1.107114 GCAATCTCTCGTCTCTCCCA 58.893 55.000 0.00 0.00 0.00 4.37
256 257 1.066908 GCAATCTCTCGTCTCTCCCAG 59.933 57.143 0.00 0.00 0.00 4.45
257 258 1.066908 CAATCTCTCGTCTCTCCCAGC 59.933 57.143 0.00 0.00 0.00 4.85
258 259 0.257328 ATCTCTCGTCTCTCCCAGCA 59.743 55.000 0.00 0.00 0.00 4.41
259 260 0.393673 TCTCTCGTCTCTCCCAGCAG 60.394 60.000 0.00 0.00 0.00 4.24
260 261 0.393673 CTCTCGTCTCTCCCAGCAGA 60.394 60.000 0.00 0.00 0.00 4.26
261 262 0.038310 TCTCGTCTCTCCCAGCAGAA 59.962 55.000 0.00 0.00 0.00 3.02
262 263 0.455410 CTCGTCTCTCCCAGCAGAAG 59.545 60.000 0.00 0.00 0.00 2.85
263 264 0.038310 TCGTCTCTCCCAGCAGAAGA 59.962 55.000 0.00 0.00 0.00 2.87
264 265 0.891373 CGTCTCTCCCAGCAGAAGAA 59.109 55.000 0.00 0.00 0.00 2.52
265 266 1.273606 CGTCTCTCCCAGCAGAAGAAA 59.726 52.381 0.00 0.00 0.00 2.52
266 267 2.093764 CGTCTCTCCCAGCAGAAGAAAT 60.094 50.000 0.00 0.00 0.00 2.17
267 268 3.131223 CGTCTCTCCCAGCAGAAGAAATA 59.869 47.826 0.00 0.00 0.00 1.40
268 269 4.382040 CGTCTCTCCCAGCAGAAGAAATAA 60.382 45.833 0.00 0.00 0.00 1.40
269 270 5.491982 GTCTCTCCCAGCAGAAGAAATAAA 58.508 41.667 0.00 0.00 0.00 1.40
270 271 5.940470 GTCTCTCCCAGCAGAAGAAATAAAA 59.060 40.000 0.00 0.00 0.00 1.52
271 272 6.431234 GTCTCTCCCAGCAGAAGAAATAAAAA 59.569 38.462 0.00 0.00 0.00 1.94
290 291 2.168054 AAAAAGTCCCGGCGAATCG 58.832 52.632 9.30 0.00 0.00 3.34
291 292 0.320946 AAAAAGTCCCGGCGAATCGA 60.321 50.000 9.30 0.00 0.00 3.59
292 293 0.107848 AAAAGTCCCGGCGAATCGAT 60.108 50.000 9.30 0.00 0.00 3.59
293 294 0.529992 AAAGTCCCGGCGAATCGATC 60.530 55.000 9.30 0.00 0.00 3.69
313 314 3.583383 CAAAGCCTTGCTCCCTCG 58.417 61.111 0.00 0.00 38.25 4.63
314 315 2.360475 AAAGCCTTGCTCCCTCGC 60.360 61.111 0.00 0.00 38.25 5.03
315 316 2.900106 AAAGCCTTGCTCCCTCGCT 61.900 57.895 0.00 0.00 38.25 4.93
316 317 3.618780 AAGCCTTGCTCCCTCGCTG 62.619 63.158 0.00 0.00 38.25 5.18
319 320 4.093291 CTTGCTCCCTCGCTGCCT 62.093 66.667 0.00 0.00 0.00 4.75
320 321 4.399395 TTGCTCCCTCGCTGCCTG 62.399 66.667 0.00 0.00 0.00 4.85
343 344 3.459063 GTACGGCCCGCCTCTCTT 61.459 66.667 1.23 0.00 0.00 2.85
344 345 3.145551 TACGGCCCGCCTCTCTTC 61.146 66.667 1.23 0.00 0.00 2.87
345 346 3.657038 TACGGCCCGCCTCTCTTCT 62.657 63.158 1.23 0.00 0.00 2.85
346 347 2.274948 TACGGCCCGCCTCTCTTCTA 62.275 60.000 1.23 0.00 0.00 2.10
347 348 2.203771 CGGCCCGCCTCTCTTCTAT 61.204 63.158 3.84 0.00 0.00 1.98
348 349 1.749334 CGGCCCGCCTCTCTTCTATT 61.749 60.000 3.84 0.00 0.00 1.73
349 350 0.470341 GGCCCGCCTCTCTTCTATTT 59.530 55.000 0.00 0.00 0.00 1.40
350 351 1.541452 GGCCCGCCTCTCTTCTATTTC 60.541 57.143 0.00 0.00 0.00 2.17
351 352 1.414550 GCCCGCCTCTCTTCTATTTCT 59.585 52.381 0.00 0.00 0.00 2.52
352 353 2.628657 GCCCGCCTCTCTTCTATTTCTA 59.371 50.000 0.00 0.00 0.00 2.10
353 354 3.553302 GCCCGCCTCTCTTCTATTTCTAC 60.553 52.174 0.00 0.00 0.00 2.59
354 355 3.892588 CCCGCCTCTCTTCTATTTCTACT 59.107 47.826 0.00 0.00 0.00 2.57
355 356 4.022676 CCCGCCTCTCTTCTATTTCTACTC 60.023 50.000 0.00 0.00 0.00 2.59
356 357 4.022676 CCGCCTCTCTTCTATTTCTACTCC 60.023 50.000 0.00 0.00 0.00 3.85
357 358 4.825085 CGCCTCTCTTCTATTTCTACTCCT 59.175 45.833 0.00 0.00 0.00 3.69
358 359 5.048991 CGCCTCTCTTCTATTTCTACTCCTC 60.049 48.000 0.00 0.00 0.00 3.71
359 360 5.048991 GCCTCTCTTCTATTTCTACTCCTCG 60.049 48.000 0.00 0.00 0.00 4.63
360 361 6.059484 CCTCTCTTCTATTTCTACTCCTCGT 58.941 44.000 0.00 0.00 0.00 4.18
361 362 6.204108 CCTCTCTTCTATTTCTACTCCTCGTC 59.796 46.154 0.00 0.00 0.00 4.20
362 363 6.651086 TCTCTTCTATTTCTACTCCTCGTCA 58.349 40.000 0.00 0.00 0.00 4.35
363 364 6.539464 TCTCTTCTATTTCTACTCCTCGTCAC 59.461 42.308 0.00 0.00 0.00 3.67
364 365 5.589452 TCTTCTATTTCTACTCCTCGTCACC 59.411 44.000 0.00 0.00 0.00 4.02
365 366 4.205587 TCTATTTCTACTCCTCGTCACCC 58.794 47.826 0.00 0.00 0.00 4.61
366 367 1.171308 TTTCTACTCCTCGTCACCCG 58.829 55.000 0.00 0.00 38.13 5.28
367 368 1.310933 TTCTACTCCTCGTCACCCGC 61.311 60.000 0.00 0.00 36.19 6.13
368 369 2.753043 TACTCCTCGTCACCCGCC 60.753 66.667 0.00 0.00 36.19 6.13
424 425 4.500116 GGACCGCCTCTGCTCGTC 62.500 72.222 0.00 0.00 35.07 4.20
425 426 3.444805 GACCGCCTCTGCTCGTCT 61.445 66.667 0.00 0.00 33.80 4.18
426 427 3.404141 GACCGCCTCTGCTCGTCTC 62.404 68.421 0.00 0.00 33.80 3.36
427 428 4.200283 CCGCCTCTGCTCGTCTCC 62.200 72.222 0.00 0.00 34.43 3.71
428 429 3.137459 CGCCTCTGCTCGTCTCCT 61.137 66.667 0.00 0.00 34.43 3.69
429 430 2.705821 CGCCTCTGCTCGTCTCCTT 61.706 63.158 0.00 0.00 34.43 3.36
430 431 1.140804 GCCTCTGCTCGTCTCCTTC 59.859 63.158 0.00 0.00 33.53 3.46
431 432 1.813192 CCTCTGCTCGTCTCCTTCC 59.187 63.158 0.00 0.00 0.00 3.46
432 433 0.682855 CCTCTGCTCGTCTCCTTCCT 60.683 60.000 0.00 0.00 0.00 3.36
433 434 0.738389 CTCTGCTCGTCTCCTTCCTC 59.262 60.000 0.00 0.00 0.00 3.71
434 435 0.329931 TCTGCTCGTCTCCTTCCTCT 59.670 55.000 0.00 0.00 0.00 3.69
435 436 0.738389 CTGCTCGTCTCCTTCCTCTC 59.262 60.000 0.00 0.00 0.00 3.20
436 437 0.681564 TGCTCGTCTCCTTCCTCTCC 60.682 60.000 0.00 0.00 0.00 3.71
437 438 1.720694 GCTCGTCTCCTTCCTCTCCG 61.721 65.000 0.00 0.00 0.00 4.63
438 439 1.077644 TCGTCTCCTTCCTCTCCGG 60.078 63.158 0.00 0.00 0.00 5.14
439 440 1.378778 CGTCTCCTTCCTCTCCGGT 60.379 63.158 0.00 0.00 0.00 5.28
440 441 1.378124 CGTCTCCTTCCTCTCCGGTC 61.378 65.000 0.00 0.00 0.00 4.79
441 442 0.323542 GTCTCCTTCCTCTCCGGTCA 60.324 60.000 0.00 0.00 0.00 4.02
442 443 0.631753 TCTCCTTCCTCTCCGGTCAT 59.368 55.000 0.00 0.00 0.00 3.06
443 444 1.036707 CTCCTTCCTCTCCGGTCATC 58.963 60.000 0.00 0.00 0.00 2.92
444 445 0.335019 TCCTTCCTCTCCGGTCATCA 59.665 55.000 0.00 0.00 0.00 3.07
445 446 0.461961 CCTTCCTCTCCGGTCATCAC 59.538 60.000 0.00 0.00 0.00 3.06
446 447 0.461961 CTTCCTCTCCGGTCATCACC 59.538 60.000 0.00 0.00 39.69 4.02
470 471 4.308458 CGGTCCGGCCACTCAACA 62.308 66.667 14.17 0.00 36.97 3.33
471 472 2.112297 GGTCCGGCCACTCAACAA 59.888 61.111 2.24 0.00 37.17 2.83
472 473 2.258726 GGTCCGGCCACTCAACAAC 61.259 63.158 2.24 0.00 37.17 3.32
473 474 1.227853 GTCCGGCCACTCAACAACT 60.228 57.895 2.24 0.00 0.00 3.16
474 475 0.818040 GTCCGGCCACTCAACAACTT 60.818 55.000 2.24 0.00 0.00 2.66
475 476 0.817634 TCCGGCCACTCAACAACTTG 60.818 55.000 2.24 0.00 0.00 3.16
476 477 0.817634 CCGGCCACTCAACAACTTGA 60.818 55.000 2.24 0.00 35.04 3.02
477 478 1.238439 CGGCCACTCAACAACTTGAT 58.762 50.000 2.24 0.00 35.78 2.57
478 479 1.608590 CGGCCACTCAACAACTTGATT 59.391 47.619 2.24 0.00 35.78 2.57
479 480 2.605338 CGGCCACTCAACAACTTGATTG 60.605 50.000 2.24 0.00 44.60 2.67
480 481 2.397549 GCCACTCAACAACTTGATTGC 58.602 47.619 0.00 0.00 42.62 3.56
481 482 2.223782 GCCACTCAACAACTTGATTGCA 60.224 45.455 0.00 0.00 42.62 4.08
482 483 3.737663 GCCACTCAACAACTTGATTGCAA 60.738 43.478 0.00 0.00 42.62 4.08
483 484 4.624015 CCACTCAACAACTTGATTGCAAT 58.376 39.130 12.83 12.83 42.62 3.56
484 485 5.771469 CCACTCAACAACTTGATTGCAATA 58.229 37.500 12.97 0.00 42.62 1.90
485 486 5.630680 CCACTCAACAACTTGATTGCAATAC 59.369 40.000 12.97 6.91 42.62 1.89
486 487 5.340403 CACTCAACAACTTGATTGCAATACG 59.660 40.000 12.97 6.25 42.62 3.06
487 488 4.793071 TCAACAACTTGATTGCAATACGG 58.207 39.130 12.97 7.61 42.62 4.02
488 489 4.517075 TCAACAACTTGATTGCAATACGGA 59.483 37.500 12.97 0.00 42.62 4.69
489 490 4.685169 ACAACTTGATTGCAATACGGAG 57.315 40.909 12.97 10.11 42.62 4.63
490 491 3.119849 ACAACTTGATTGCAATACGGAGC 60.120 43.478 12.97 0.00 42.62 4.70
491 492 1.665679 ACTTGATTGCAATACGGAGCG 59.334 47.619 12.97 0.00 32.68 5.03
492 493 0.376852 TTGATTGCAATACGGAGCGC 59.623 50.000 12.97 0.00 0.00 5.92
493 494 0.742635 TGATTGCAATACGGAGCGCA 60.743 50.000 12.97 0.12 0.00 6.09
494 495 3.973735 TTGCAATACGGAGCGCAA 58.026 50.000 11.47 2.47 41.79 4.85
495 496 0.808125 ATTGCAATACGGAGCGCAAA 59.192 45.000 11.02 0.00 46.46 3.68
496 497 0.167908 TTGCAATACGGAGCGCAAAG 59.832 50.000 11.47 1.66 41.14 2.77
497 498 0.672091 TGCAATACGGAGCGCAAAGA 60.672 50.000 11.47 0.00 0.00 2.52
498 499 0.247695 GCAATACGGAGCGCAAAGAC 60.248 55.000 11.47 0.00 0.00 3.01
499 500 0.373716 CAATACGGAGCGCAAAGACC 59.626 55.000 11.47 3.79 0.00 3.85
522 523 2.042104 CGCAGCTTGAGTCCAAAAAG 57.958 50.000 0.00 0.00 0.00 2.27
523 524 1.335324 CGCAGCTTGAGTCCAAAAAGG 60.335 52.381 0.00 0.00 39.47 3.11
524 525 1.956477 GCAGCTTGAGTCCAAAAAGGA 59.044 47.619 0.00 0.00 46.75 3.36
644 645 9.428097 TGATCCATATTAATTCTGAGTGATTCG 57.572 33.333 0.00 0.00 0.00 3.34
648 649 9.144747 CCATATTAATTCTGAGTGATTCGGTAG 57.855 37.037 0.00 0.00 33.64 3.18
649 650 9.698309 CATATTAATTCTGAGTGATTCGGTAGT 57.302 33.333 0.00 0.00 33.64 2.73
652 653 6.525578 AATTCTGAGTGATTCGGTAGTACA 57.474 37.500 2.06 0.00 33.64 2.90
653 654 5.970317 TTCTGAGTGATTCGGTAGTACAA 57.030 39.130 2.06 0.00 33.64 2.41
654 655 5.306532 TCTGAGTGATTCGGTAGTACAAC 57.693 43.478 2.06 0.00 33.64 3.32
655 656 5.008331 TCTGAGTGATTCGGTAGTACAACT 58.992 41.667 2.06 0.00 33.64 3.16
656 657 5.475909 TCTGAGTGATTCGGTAGTACAACTT 59.524 40.000 2.06 0.00 33.64 2.66
657 658 6.015688 TCTGAGTGATTCGGTAGTACAACTTT 60.016 38.462 2.06 0.00 33.64 2.66
658 659 7.175467 TCTGAGTGATTCGGTAGTACAACTTTA 59.825 37.037 2.06 0.00 33.64 1.85
659 660 7.833786 TGAGTGATTCGGTAGTACAACTTTAT 58.166 34.615 2.06 0.00 0.00 1.40
660 661 8.959548 TGAGTGATTCGGTAGTACAACTTTATA 58.040 33.333 2.06 0.00 0.00 0.98
661 662 9.230932 GAGTGATTCGGTAGTACAACTTTATAC 57.769 37.037 2.06 0.00 0.00 1.47
679 680 9.838339 ACTTTATACTACTAAATGAGCAGCAAT 57.162 29.630 0.00 0.00 0.00 3.56
702 703 4.657436 AACATGGATCGGAGAGAGTAAC 57.343 45.455 0.00 0.00 43.63 2.50
703 704 3.632333 ACATGGATCGGAGAGAGTAACA 58.368 45.455 0.00 0.00 43.63 2.41
704 705 4.023980 ACATGGATCGGAGAGAGTAACAA 58.976 43.478 0.00 0.00 43.63 2.83
752 753 3.482436 ACAACTTTGGACTAAATCGGCA 58.518 40.909 0.00 0.00 0.00 5.69
754 755 4.226761 CAACTTTGGACTAAATCGGCAAC 58.773 43.478 0.00 0.00 0.00 4.17
769 770 7.523293 AATCGGCAACAATTAATATGGATCA 57.477 32.000 0.00 0.00 0.00 2.92
770 771 6.951062 TCGGCAACAATTAATATGGATCAA 57.049 33.333 0.00 0.00 0.00 2.57
771 772 7.523293 TCGGCAACAATTAATATGGATCAAT 57.477 32.000 0.00 0.00 0.00 2.57
829 830 8.553459 TTTTTGGAATAAACTGCTGAAAACAA 57.447 26.923 0.00 0.00 0.00 2.83
830 831 8.553459 TTTTGGAATAAACTGCTGAAAACAAA 57.447 26.923 0.00 0.00 0.00 2.83
831 832 8.553459 TTTGGAATAAACTGCTGAAAACAAAA 57.447 26.923 0.00 0.00 0.00 2.44
832 833 8.553459 TTGGAATAAACTGCTGAAAACAAAAA 57.447 26.923 0.00 0.00 0.00 1.94
833 834 8.195617 TGGAATAAACTGCTGAAAACAAAAAG 57.804 30.769 0.00 0.00 0.00 2.27
834 835 8.037758 TGGAATAAACTGCTGAAAACAAAAAGA 58.962 29.630 0.00 0.00 0.00 2.52
835 836 9.045223 GGAATAAACTGCTGAAAACAAAAAGAT 57.955 29.630 0.00 0.00 0.00 2.40
839 840 7.449934 AACTGCTGAAAACAAAAAGATAACG 57.550 32.000 0.00 0.00 0.00 3.18
840 841 6.560711 ACTGCTGAAAACAAAAAGATAACGT 58.439 32.000 0.00 0.00 0.00 3.99
841 842 7.033185 ACTGCTGAAAACAAAAAGATAACGTT 58.967 30.769 5.88 5.88 0.00 3.99
842 843 7.009174 ACTGCTGAAAACAAAAAGATAACGTTG 59.991 33.333 11.99 0.00 0.00 4.10
843 844 6.254589 TGCTGAAAACAAAAAGATAACGTTGG 59.745 34.615 11.99 0.00 0.00 3.77
844 845 6.474102 GCTGAAAACAAAAAGATAACGTTGGA 59.526 34.615 11.99 0.00 0.00 3.53
845 846 7.009723 GCTGAAAACAAAAAGATAACGTTGGAA 59.990 33.333 11.99 0.00 0.00 3.53
846 847 8.758633 TGAAAACAAAAAGATAACGTTGGAAA 57.241 26.923 11.99 0.00 0.00 3.13
847 848 9.204570 TGAAAACAAAAAGATAACGTTGGAAAA 57.795 25.926 11.99 0.00 0.00 2.29
848 849 9.683651 GAAAACAAAAAGATAACGTTGGAAAAG 57.316 29.630 11.99 0.00 0.00 2.27
849 850 7.764695 AACAAAAAGATAACGTTGGAAAAGG 57.235 32.000 11.99 0.00 0.00 3.11
850 851 7.102847 ACAAAAAGATAACGTTGGAAAAGGA 57.897 32.000 11.99 0.00 0.00 3.36
851 852 7.548967 ACAAAAAGATAACGTTGGAAAAGGAA 58.451 30.769 11.99 0.00 0.00 3.36
852 853 7.704899 ACAAAAAGATAACGTTGGAAAAGGAAG 59.295 33.333 11.99 0.00 0.00 3.46
853 854 6.954487 AAAGATAACGTTGGAAAAGGAAGT 57.046 33.333 11.99 0.00 0.00 3.01
854 855 8.454570 AAAAGATAACGTTGGAAAAGGAAGTA 57.545 30.769 11.99 0.00 0.00 2.24
855 856 8.454570 AAAGATAACGTTGGAAAAGGAAGTAA 57.545 30.769 11.99 0.00 0.00 2.24
856 857 8.631480 AAGATAACGTTGGAAAAGGAAGTAAT 57.369 30.769 11.99 0.00 0.00 1.89
857 858 8.631480 AGATAACGTTGGAAAAGGAAGTAATT 57.369 30.769 11.99 0.00 0.00 1.40
858 859 8.512138 AGATAACGTTGGAAAAGGAAGTAATTG 58.488 33.333 11.99 0.00 0.00 2.32
859 860 5.447624 ACGTTGGAAAAGGAAGTAATTGG 57.552 39.130 0.00 0.00 0.00 3.16
860 861 4.234574 CGTTGGAAAAGGAAGTAATTGGC 58.765 43.478 0.00 0.00 0.00 4.52
861 862 4.234574 GTTGGAAAAGGAAGTAATTGGCG 58.765 43.478 0.00 0.00 0.00 5.69
862 863 2.823154 TGGAAAAGGAAGTAATTGGCGG 59.177 45.455 0.00 0.00 0.00 6.13
863 864 2.416836 GGAAAAGGAAGTAATTGGCGGC 60.417 50.000 0.00 0.00 0.00 6.53
864 865 1.917872 AAAGGAAGTAATTGGCGGCA 58.082 45.000 7.97 7.97 0.00 5.69
865 866 1.917872 AAGGAAGTAATTGGCGGCAA 58.082 45.000 27.57 27.57 0.00 4.52
866 867 1.917872 AGGAAGTAATTGGCGGCAAA 58.082 45.000 29.04 10.55 0.00 3.68
867 868 2.243810 AGGAAGTAATTGGCGGCAAAA 58.756 42.857 29.04 16.76 0.00 2.44
868 869 2.630580 AGGAAGTAATTGGCGGCAAAAA 59.369 40.909 29.04 16.38 0.00 1.94
908 909 5.022282 ACCTTTTTCATGGGTTTGTTCAG 57.978 39.130 0.00 0.00 0.00 3.02
950 955 8.462143 ACTCATAAGGTATTATCGCATTTACG 57.538 34.615 0.00 0.00 28.73 3.18
974 979 5.262588 TCACGGCTATATATATGCACCAG 57.737 43.478 5.44 0.00 0.00 4.00
975 980 4.953579 TCACGGCTATATATATGCACCAGA 59.046 41.667 5.44 3.07 0.00 3.86
977 982 6.098266 TCACGGCTATATATATGCACCAGATT 59.902 38.462 5.44 0.00 0.00 2.40
978 983 6.763135 CACGGCTATATATATGCACCAGATTT 59.237 38.462 5.44 0.00 0.00 2.17
979 984 7.280876 CACGGCTATATATATGCACCAGATTTT 59.719 37.037 5.44 0.00 0.00 1.82
981 986 8.124823 CGGCTATATATATGCACCAGATTTTTG 58.875 37.037 5.44 0.00 0.00 2.44
990 995 7.656707 ATGCACCAGATTTTTGTTATCAAAC 57.343 32.000 0.00 0.00 42.28 2.93
1027 1056 1.070038 CGTGCCAAAAACCATGATGC 58.930 50.000 0.00 0.00 0.00 3.91
1068 1097 1.099689 GTCTCCTCGTCCTCCTCTTG 58.900 60.000 0.00 0.00 0.00 3.02
1086 1115 2.114051 GGTCCTCGTCTCCTCCGAC 61.114 68.421 0.00 0.00 0.00 4.79
1121 1150 2.227968 GACACATGCAAGTCCGTCGC 62.228 60.000 0.00 0.00 0.00 5.19
1122 1151 3.112075 ACATGCAAGTCCGTCGCG 61.112 61.111 0.00 0.00 0.00 5.87
1224 1253 2.944557 CTCGTCGTCATCGCCACG 60.945 66.667 0.00 0.00 38.18 4.94
1230 1259 0.525455 TCGTCATCGCCACGAAGATG 60.525 55.000 7.83 7.83 43.13 2.90
1238 1267 1.519455 CCACGAAGATGACCCGAGC 60.519 63.158 0.00 0.00 0.00 5.03
1576 1605 1.153369 CCGCCGAGGATGTGTGAAT 60.153 57.895 0.00 0.00 45.00 2.57
1581 1610 1.293924 CGAGGATGTGTGAATCTGGC 58.706 55.000 0.00 0.00 0.00 4.85
1582 1611 1.134580 CGAGGATGTGTGAATCTGGCT 60.135 52.381 0.00 0.00 0.00 4.75
1584 1613 3.430790 CGAGGATGTGTGAATCTGGCTAA 60.431 47.826 0.00 0.00 0.00 3.09
1586 1615 5.509670 CGAGGATGTGTGAATCTGGCTAATA 60.510 44.000 0.00 0.00 0.00 0.98
1587 1616 5.862845 AGGATGTGTGAATCTGGCTAATAG 58.137 41.667 0.00 0.00 0.00 1.73
1588 1617 4.453819 GGATGTGTGAATCTGGCTAATAGC 59.546 45.833 3.17 3.17 41.46 2.97
1589 1618 4.760530 TGTGTGAATCTGGCTAATAGCT 57.239 40.909 12.41 0.00 41.99 3.32
1590 1619 5.869649 TGTGTGAATCTGGCTAATAGCTA 57.130 39.130 12.41 5.08 41.99 3.32
1591 1620 6.425210 TGTGTGAATCTGGCTAATAGCTAT 57.575 37.500 12.41 0.00 41.99 2.97
1593 1622 6.041979 TGTGTGAATCTGGCTAATAGCTATGA 59.958 38.462 12.41 8.26 41.99 2.15
1594 1623 6.589523 GTGTGAATCTGGCTAATAGCTATGAG 59.410 42.308 13.26 13.26 41.99 2.90
1597 1626 5.930837 ATCTGGCTAATAGCTATGAGTCC 57.069 43.478 18.42 18.24 41.99 3.85
1671 1713 3.417101 TGCAAGTATGTTTGGACGGAAT 58.583 40.909 0.00 0.00 0.00 3.01
1815 2061 2.279469 GCACTGTCTGCGTACGATC 58.721 57.895 21.65 2.16 35.72 3.69
1844 2093 1.076777 AGGAAATGGATGTGGCCCG 60.077 57.895 0.00 0.00 0.00 6.13
1860 2109 2.357952 GGCCCGTTAATGTTCATCCTTC 59.642 50.000 0.00 0.00 0.00 3.46
1944 2193 4.435436 CAGGCTGCGCGGTCACTA 62.435 66.667 24.95 0.00 0.00 2.74
1967 2216 8.706521 ACTAACCAGAGGAGAAAAATAGTATCC 58.293 37.037 0.00 0.00 0.00 2.59
1972 2221 6.480320 CAGAGGAGAAAAATAGTATCCAACCG 59.520 42.308 0.00 0.00 32.21 4.44
1973 2222 6.383147 AGAGGAGAAAAATAGTATCCAACCGA 59.617 38.462 0.00 0.00 32.21 4.69
1974 2223 6.583562 AGGAGAAAAATAGTATCCAACCGAG 58.416 40.000 0.00 0.00 32.21 4.63
1975 2224 6.156429 AGGAGAAAAATAGTATCCAACCGAGT 59.844 38.462 0.00 0.00 32.21 4.18
2007 2289 3.055719 CAAACGCCTGACCCGCAT 61.056 61.111 0.00 0.00 0.00 4.73
2011 2293 2.745884 CGCCTGACCCGCATCAAA 60.746 61.111 0.00 0.00 0.00 2.69
2019 2327 2.492773 CCCGCATCAAATCTGGGGC 61.493 63.158 1.18 0.00 43.42 5.80
2021 2329 1.819208 CGCATCAAATCTGGGGCGA 60.819 57.895 0.00 0.00 43.57 5.54
2022 2330 1.375853 CGCATCAAATCTGGGGCGAA 61.376 55.000 0.00 0.00 43.57 4.70
2033 2341 2.668550 GGGCGAATATGGGGACGC 60.669 66.667 0.00 0.00 0.00 5.19
2038 2346 4.265056 AATATGGGGACGCCCGGC 62.265 66.667 6.02 0.00 46.66 6.13
2054 2362 4.465512 GCCGTGCCTGCAACATCG 62.466 66.667 0.00 0.00 0.00 3.84
2057 2365 2.870372 GTGCCTGCAACATCGGAC 59.130 61.111 0.00 0.00 0.00 4.79
2061 2369 1.639298 GCCTGCAACATCGGACTGAC 61.639 60.000 0.00 0.00 0.00 3.51
2072 2380 4.208686 GACTGACCGCTAGGCCCG 62.209 72.222 0.00 0.00 42.76 6.13
2074 2382 4.514577 CTGACCGCTAGGCCCGTG 62.515 72.222 0.00 0.00 42.76 4.94
2087 2395 4.178214 CCGTGCCAATTCGCGCAT 62.178 61.111 8.75 0.00 39.26 4.73
2088 2396 2.706432 CGTGCCAATTCGCGCATA 59.294 55.556 8.75 0.00 39.26 3.14
2092 2400 1.154413 GCCAATTCGCGCATATCCG 60.154 57.895 8.75 0.00 0.00 4.18
2140 2448 4.766375 TCTCTTCTTTGTTTGTCCTCGTT 58.234 39.130 0.00 0.00 0.00 3.85
2141 2449 5.183228 TCTCTTCTTTGTTTGTCCTCGTTT 58.817 37.500 0.00 0.00 0.00 3.60
2142 2450 5.064707 TCTCTTCTTTGTTTGTCCTCGTTTG 59.935 40.000 0.00 0.00 0.00 2.93
2148 2456 3.864243 TGTTTGTCCTCGTTTGTACAGT 58.136 40.909 0.00 0.00 0.00 3.55
2151 2459 1.058404 GTCCTCGTTTGTACAGTCGC 58.942 55.000 14.11 0.00 0.00 5.19
2154 2462 1.862201 CCTCGTTTGTACAGTCGCAAA 59.138 47.619 14.11 0.51 32.89 3.68
2167 2475 0.878523 TCGCAAACGGTCAAGGTCAG 60.879 55.000 0.00 0.00 40.63 3.51
2171 2479 0.818040 AAACGGTCAAGGTCAGCACC 60.818 55.000 0.00 0.00 44.19 5.01
2173 2481 1.003355 CGGTCAAGGTCAGCACCAT 60.003 57.895 0.00 0.00 46.68 3.55
2220 2528 9.684448 TTACTTCTAGATCATCGATGAATTCAC 57.316 33.333 30.41 18.29 40.69 3.18
2222 2530 5.703876 TCTAGATCATCGATGAATTCACCG 58.296 41.667 30.41 16.44 40.69 4.94
2244 2552 2.107031 TGGAATGATGGCTATGAGTGGG 59.893 50.000 0.00 0.00 0.00 4.61
2294 2602 1.632422 GCGAAGGGCAATCAATGTTG 58.368 50.000 0.00 0.00 42.87 3.33
2295 2603 1.736696 GCGAAGGGCAATCAATGTTGG 60.737 52.381 0.00 0.00 42.87 3.77
2307 2624 3.819368 TCAATGTTGGCTCTGTGAAGAA 58.181 40.909 0.00 0.00 0.00 2.52
2316 2633 5.181009 TGGCTCTGTGAAGAATATGAACTG 58.819 41.667 0.00 0.00 0.00 3.16
2337 2654 0.824759 GACTCGGCTGTTCATACCCT 59.175 55.000 0.00 0.00 0.00 4.34
2342 2659 1.369625 GGCTGTTCATACCCTTCACG 58.630 55.000 0.00 0.00 0.00 4.35
2401 2792 0.109319 CCGCCGGACCTGAAATTTTG 60.109 55.000 5.05 0.00 0.00 2.44
2444 2835 3.093574 CAAAATGATCGACGTGCATGTC 58.906 45.455 26.13 26.13 35.49 3.06
2448 2839 1.726248 TGATCGACGTGCATGTCTTTG 59.274 47.619 30.85 18.75 36.71 2.77
2546 2943 2.509336 GAGGCATGTCCGGTCACG 60.509 66.667 2.72 0.00 40.77 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.202756 GAGCGTAGGTTGCGGGAG 60.203 66.667 0.00 0.00 39.88 4.30
5 6 4.124351 CGAGCGTAGGTTGCGGGA 62.124 66.667 0.00 0.00 39.88 5.14
8 9 2.546645 TAACCCGAGCGTAGGTTGCG 62.547 60.000 15.07 0.00 45.89 4.85
9 10 1.080435 GTAACCCGAGCGTAGGTTGC 61.080 60.000 15.07 11.08 45.89 4.17
12 13 0.610232 ACAGTAACCCGAGCGTAGGT 60.610 55.000 0.00 0.00 46.54 3.08
13 14 0.529378 AACAGTAACCCGAGCGTAGG 59.471 55.000 0.00 0.00 0.00 3.18
14 15 2.421424 AGTAACAGTAACCCGAGCGTAG 59.579 50.000 0.00 0.00 0.00 3.51
15 16 2.420022 GAGTAACAGTAACCCGAGCGTA 59.580 50.000 0.00 0.00 0.00 4.42
16 17 1.200948 GAGTAACAGTAACCCGAGCGT 59.799 52.381 0.00 0.00 0.00 5.07
17 18 1.471684 AGAGTAACAGTAACCCGAGCG 59.528 52.381 0.00 0.00 0.00 5.03
18 19 3.589495 AAGAGTAACAGTAACCCGAGC 57.411 47.619 0.00 0.00 0.00 5.03
19 20 4.492611 GGAAAGAGTAACAGTAACCCGAG 58.507 47.826 0.00 0.00 0.00 4.63
20 21 3.057315 CGGAAAGAGTAACAGTAACCCGA 60.057 47.826 0.00 0.00 35.70 5.14
21 22 3.248266 CGGAAAGAGTAACAGTAACCCG 58.752 50.000 0.00 0.00 0.00 5.28
22 23 4.240888 GACGGAAAGAGTAACAGTAACCC 58.759 47.826 0.00 0.00 0.00 4.11
23 24 4.874970 TGACGGAAAGAGTAACAGTAACC 58.125 43.478 0.00 0.00 0.00 2.85
24 25 5.527033 ACTGACGGAAAGAGTAACAGTAAC 58.473 41.667 0.00 0.00 35.77 2.50
25 26 5.779529 ACTGACGGAAAGAGTAACAGTAA 57.220 39.130 0.00 0.00 35.77 2.24
26 27 5.779529 AACTGACGGAAAGAGTAACAGTA 57.220 39.130 0.00 0.00 36.36 2.74
27 28 4.667519 AACTGACGGAAAGAGTAACAGT 57.332 40.909 0.00 0.00 38.48 3.55
28 29 7.148623 GGAATAAACTGACGGAAAGAGTAACAG 60.149 40.741 0.00 0.00 0.00 3.16
29 30 6.647895 GGAATAAACTGACGGAAAGAGTAACA 59.352 38.462 0.00 0.00 0.00 2.41
30 31 6.872547 AGGAATAAACTGACGGAAAGAGTAAC 59.127 38.462 0.00 0.00 0.00 2.50
31 32 7.001099 AGGAATAAACTGACGGAAAGAGTAA 57.999 36.000 0.00 0.00 0.00 2.24
32 33 6.600882 AGGAATAAACTGACGGAAAGAGTA 57.399 37.500 0.00 0.00 0.00 2.59
33 34 5.485209 AGGAATAAACTGACGGAAAGAGT 57.515 39.130 0.00 0.00 0.00 3.24
34 35 6.128254 GGAAAGGAATAAACTGACGGAAAGAG 60.128 42.308 0.00 0.00 0.00 2.85
35 36 5.704053 GGAAAGGAATAAACTGACGGAAAGA 59.296 40.000 0.00 0.00 0.00 2.52
36 37 5.705905 AGGAAAGGAATAAACTGACGGAAAG 59.294 40.000 0.00 0.00 0.00 2.62
37 38 5.627135 AGGAAAGGAATAAACTGACGGAAA 58.373 37.500 0.00 0.00 0.00 3.13
38 39 5.237236 AGGAAAGGAATAAACTGACGGAA 57.763 39.130 0.00 0.00 0.00 4.30
39 40 4.619863 CGAGGAAAGGAATAAACTGACGGA 60.620 45.833 0.00 0.00 0.00 4.69
40 41 3.617263 CGAGGAAAGGAATAAACTGACGG 59.383 47.826 0.00 0.00 0.00 4.79
41 42 4.243270 ACGAGGAAAGGAATAAACTGACG 58.757 43.478 0.00 0.00 0.00 4.35
42 43 5.617087 GCAACGAGGAAAGGAATAAACTGAC 60.617 44.000 0.00 0.00 0.00 3.51
43 44 4.454504 GCAACGAGGAAAGGAATAAACTGA 59.545 41.667 0.00 0.00 0.00 3.41
44 45 4.215399 TGCAACGAGGAAAGGAATAAACTG 59.785 41.667 0.00 0.00 0.00 3.16
45 46 4.394729 TGCAACGAGGAAAGGAATAAACT 58.605 39.130 0.00 0.00 0.00 2.66
46 47 4.759516 TGCAACGAGGAAAGGAATAAAC 57.240 40.909 0.00 0.00 0.00 2.01
47 48 4.380444 GCATGCAACGAGGAAAGGAATAAA 60.380 41.667 14.21 0.00 0.00 1.40
48 49 3.128589 GCATGCAACGAGGAAAGGAATAA 59.871 43.478 14.21 0.00 0.00 1.40
49 50 2.682856 GCATGCAACGAGGAAAGGAATA 59.317 45.455 14.21 0.00 0.00 1.75
50 51 1.474077 GCATGCAACGAGGAAAGGAAT 59.526 47.619 14.21 0.00 0.00 3.01
51 52 0.881118 GCATGCAACGAGGAAAGGAA 59.119 50.000 14.21 0.00 0.00 3.36
52 53 0.250684 TGCATGCAACGAGGAAAGGA 60.251 50.000 20.30 0.00 0.00 3.36
53 54 0.813184 ATGCATGCAACGAGGAAAGG 59.187 50.000 26.68 0.00 0.00 3.11
54 55 1.202222 GGATGCATGCAACGAGGAAAG 60.202 52.381 26.68 0.00 0.00 2.62
55 56 0.810648 GGATGCATGCAACGAGGAAA 59.189 50.000 26.68 0.00 0.00 3.13
56 57 0.035152 AGGATGCATGCAACGAGGAA 60.035 50.000 26.68 0.00 0.00 3.36
57 58 0.035152 AAGGATGCATGCAACGAGGA 60.035 50.000 26.68 0.00 0.00 3.71
58 59 1.667236 TAAGGATGCATGCAACGAGG 58.333 50.000 26.68 0.00 0.00 4.63
59 60 3.763097 TTTAAGGATGCATGCAACGAG 57.237 42.857 26.68 0.00 0.00 4.18
60 61 4.717233 AATTTAAGGATGCATGCAACGA 57.283 36.364 26.68 11.31 0.00 3.85
61 62 5.682862 GTCTAATTTAAGGATGCATGCAACG 59.317 40.000 26.68 5.93 0.00 4.10
62 63 5.979517 GGTCTAATTTAAGGATGCATGCAAC 59.020 40.000 26.68 22.48 0.00 4.17
63 64 5.893255 AGGTCTAATTTAAGGATGCATGCAA 59.107 36.000 26.68 6.44 0.00 4.08
64 65 5.448654 AGGTCTAATTTAAGGATGCATGCA 58.551 37.500 25.04 25.04 0.00 3.96
65 66 5.048434 GGAGGTCTAATTTAAGGATGCATGC 60.048 44.000 11.82 11.82 0.00 4.06
66 67 6.302269 AGGAGGTCTAATTTAAGGATGCATG 58.698 40.000 2.46 0.00 0.00 4.06
67 68 6.101734 TGAGGAGGTCTAATTTAAGGATGCAT 59.898 38.462 0.00 0.00 0.00 3.96
68 69 5.428457 TGAGGAGGTCTAATTTAAGGATGCA 59.572 40.000 0.00 0.00 0.00 3.96
69 70 5.760743 GTGAGGAGGTCTAATTTAAGGATGC 59.239 44.000 0.00 0.00 0.00 3.91
70 71 5.986135 CGTGAGGAGGTCTAATTTAAGGATG 59.014 44.000 0.00 0.00 0.00 3.51
71 72 5.453480 GCGTGAGGAGGTCTAATTTAAGGAT 60.453 44.000 0.00 0.00 0.00 3.24
72 73 4.142004 GCGTGAGGAGGTCTAATTTAAGGA 60.142 45.833 0.00 0.00 0.00 3.36
73 74 4.120589 GCGTGAGGAGGTCTAATTTAAGG 58.879 47.826 0.00 0.00 0.00 2.69
74 75 3.797256 CGCGTGAGGAGGTCTAATTTAAG 59.203 47.826 0.00 0.00 0.00 1.85
75 76 3.777478 CGCGTGAGGAGGTCTAATTTAA 58.223 45.455 0.00 0.00 0.00 1.52
76 77 2.480759 GCGCGTGAGGAGGTCTAATTTA 60.481 50.000 8.43 0.00 0.00 1.40
77 78 1.739371 GCGCGTGAGGAGGTCTAATTT 60.739 52.381 8.43 0.00 0.00 1.82
78 79 0.179108 GCGCGTGAGGAGGTCTAATT 60.179 55.000 8.43 0.00 0.00 1.40
79 80 1.437986 GCGCGTGAGGAGGTCTAAT 59.562 57.895 8.43 0.00 0.00 1.73
80 81 2.882876 GCGCGTGAGGAGGTCTAA 59.117 61.111 8.43 0.00 0.00 2.10
81 82 3.506096 CGCGCGTGAGGAGGTCTA 61.506 66.667 24.19 0.00 0.00 2.59
122 123 1.766069 CCTGTTTGTTTTGCGGTAGC 58.234 50.000 0.00 0.00 45.41 3.58
123 124 1.066303 TGCCTGTTTGTTTTGCGGTAG 59.934 47.619 0.00 0.00 0.00 3.18
124 125 1.103803 TGCCTGTTTGTTTTGCGGTA 58.896 45.000 0.00 0.00 0.00 4.02
125 126 0.459411 GTGCCTGTTTGTTTTGCGGT 60.459 50.000 0.00 0.00 0.00 5.68
126 127 1.478622 CGTGCCTGTTTGTTTTGCGG 61.479 55.000 0.00 0.00 0.00 5.69
127 128 1.478622 CCGTGCCTGTTTGTTTTGCG 61.479 55.000 0.00 0.00 0.00 4.85
128 129 1.151172 CCCGTGCCTGTTTGTTTTGC 61.151 55.000 0.00 0.00 0.00 3.68
129 130 0.529555 CCCCGTGCCTGTTTGTTTTG 60.530 55.000 0.00 0.00 0.00 2.44
130 131 1.819905 CCCCGTGCCTGTTTGTTTT 59.180 52.632 0.00 0.00 0.00 2.43
131 132 2.791868 GCCCCGTGCCTGTTTGTTT 61.792 57.895 0.00 0.00 0.00 2.83
132 133 3.223589 GCCCCGTGCCTGTTTGTT 61.224 61.111 0.00 0.00 0.00 2.83
135 136 3.943691 TACGCCCCGTGCCTGTTT 61.944 61.111 0.00 0.00 41.39 2.83
136 137 4.692475 GTACGCCCCGTGCCTGTT 62.692 66.667 0.00 0.00 41.39 3.16
144 145 4.487412 GACCTCACGTACGCCCCG 62.487 72.222 16.72 3.21 0.00 5.73
145 146 2.934570 TTGACCTCACGTACGCCCC 61.935 63.158 16.72 0.00 0.00 5.80
146 147 1.735559 GTTGACCTCACGTACGCCC 60.736 63.158 16.72 0.00 0.00 6.13
147 148 0.389426 ATGTTGACCTCACGTACGCC 60.389 55.000 16.72 0.00 0.00 5.68
148 149 0.713883 CATGTTGACCTCACGTACGC 59.286 55.000 16.72 0.00 0.00 4.42
149 150 1.983605 GTCATGTTGACCTCACGTACG 59.016 52.381 15.01 15.01 41.37 3.67
150 151 1.983605 CGTCATGTTGACCTCACGTAC 59.016 52.381 2.26 0.00 44.20 3.67
151 152 1.667756 GCGTCATGTTGACCTCACGTA 60.668 52.381 2.26 0.00 44.20 3.57
152 153 0.944311 GCGTCATGTTGACCTCACGT 60.944 55.000 2.26 0.00 44.20 4.49
153 154 1.626654 GGCGTCATGTTGACCTCACG 61.627 60.000 2.26 0.00 44.20 4.35
154 155 0.320771 AGGCGTCATGTTGACCTCAC 60.321 55.000 2.26 0.00 44.20 3.51
155 156 1.067142 GTAGGCGTCATGTTGACCTCA 60.067 52.381 2.26 0.00 44.20 3.86
156 157 1.204941 AGTAGGCGTCATGTTGACCTC 59.795 52.381 2.26 0.00 44.20 3.85
157 158 1.204941 GAGTAGGCGTCATGTTGACCT 59.795 52.381 2.26 0.00 44.20 3.85
158 159 1.067142 TGAGTAGGCGTCATGTTGACC 60.067 52.381 2.26 0.00 44.20 4.02
159 160 2.363788 TGAGTAGGCGTCATGTTGAC 57.636 50.000 0.00 0.00 43.65 3.18
160 161 3.610040 ATTGAGTAGGCGTCATGTTGA 57.390 42.857 0.00 0.00 0.00 3.18
161 162 3.684305 TGAATTGAGTAGGCGTCATGTTG 59.316 43.478 0.00 0.00 0.00 3.33
162 163 3.937814 TGAATTGAGTAGGCGTCATGTT 58.062 40.909 0.00 0.00 0.00 2.71
163 164 3.610040 TGAATTGAGTAGGCGTCATGT 57.390 42.857 0.00 0.00 0.00 3.21
164 165 5.490139 AAATGAATTGAGTAGGCGTCATG 57.510 39.130 0.00 0.00 0.00 3.07
165 166 6.515272 AAAAATGAATTGAGTAGGCGTCAT 57.485 33.333 0.00 0.00 0.00 3.06
166 167 5.390461 CGAAAAATGAATTGAGTAGGCGTCA 60.390 40.000 0.00 0.00 0.00 4.35
167 168 5.022021 CGAAAAATGAATTGAGTAGGCGTC 58.978 41.667 0.00 0.00 0.00 5.19
168 169 4.693566 TCGAAAAATGAATTGAGTAGGCGT 59.306 37.500 0.00 0.00 0.00 5.68
169 170 5.216566 TCGAAAAATGAATTGAGTAGGCG 57.783 39.130 0.00 0.00 0.00 5.52
170 171 7.475840 AGAATCGAAAAATGAATTGAGTAGGC 58.524 34.615 0.00 0.00 0.00 3.93
171 172 9.495754 GAAGAATCGAAAAATGAATTGAGTAGG 57.504 33.333 0.00 0.00 0.00 3.18
172 173 9.495754 GGAAGAATCGAAAAATGAATTGAGTAG 57.504 33.333 0.00 0.00 0.00 2.57
173 174 9.231297 AGGAAGAATCGAAAAATGAATTGAGTA 57.769 29.630 0.00 0.00 0.00 2.59
174 175 8.115490 AGGAAGAATCGAAAAATGAATTGAGT 57.885 30.769 0.00 0.00 0.00 3.41
175 176 8.976986 AAGGAAGAATCGAAAAATGAATTGAG 57.023 30.769 0.00 0.00 0.00 3.02
176 177 7.750458 CGAAGGAAGAATCGAAAAATGAATTGA 59.250 33.333 0.00 0.00 41.43 2.57
177 178 7.538678 ACGAAGGAAGAATCGAAAAATGAATTG 59.461 33.333 1.84 0.00 41.43 2.32
178 179 7.593825 ACGAAGGAAGAATCGAAAAATGAATT 58.406 30.769 1.84 0.00 41.43 2.17
179 180 7.145932 ACGAAGGAAGAATCGAAAAATGAAT 57.854 32.000 1.84 0.00 41.43 2.57
180 181 6.554334 ACGAAGGAAGAATCGAAAAATGAA 57.446 33.333 1.84 0.00 41.43 2.57
181 182 6.554334 AACGAAGGAAGAATCGAAAAATGA 57.446 33.333 1.84 0.00 41.43 2.57
182 183 7.148967 GGAAAACGAAGGAAGAATCGAAAAATG 60.149 37.037 1.84 0.00 41.43 2.32
183 184 6.861572 GGAAAACGAAGGAAGAATCGAAAAAT 59.138 34.615 1.84 0.00 41.43 1.82
184 185 6.203647 GGAAAACGAAGGAAGAATCGAAAAA 58.796 36.000 1.84 0.00 41.43 1.94
185 186 5.278120 GGGAAAACGAAGGAAGAATCGAAAA 60.278 40.000 1.84 0.00 41.43 2.29
186 187 4.214758 GGGAAAACGAAGGAAGAATCGAAA 59.785 41.667 1.84 0.00 41.43 3.46
187 188 3.749609 GGGAAAACGAAGGAAGAATCGAA 59.250 43.478 1.84 0.00 41.43 3.71
188 189 3.007614 AGGGAAAACGAAGGAAGAATCGA 59.992 43.478 1.84 0.00 41.43 3.59
189 190 3.335579 AGGGAAAACGAAGGAAGAATCG 58.664 45.455 0.00 0.00 44.33 3.34
190 191 5.004448 AGAAGGGAAAACGAAGGAAGAATC 58.996 41.667 0.00 0.00 0.00 2.52
191 192 4.986783 AGAAGGGAAAACGAAGGAAGAAT 58.013 39.130 0.00 0.00 0.00 2.40
192 193 4.432980 AGAAGGGAAAACGAAGGAAGAA 57.567 40.909 0.00 0.00 0.00 2.52
193 194 4.432980 AAGAAGGGAAAACGAAGGAAGA 57.567 40.909 0.00 0.00 0.00 2.87
194 195 6.819397 ATTAAGAAGGGAAAACGAAGGAAG 57.181 37.500 0.00 0.00 0.00 3.46
195 196 8.694581 TTAATTAAGAAGGGAAAACGAAGGAA 57.305 30.769 0.00 0.00 0.00 3.36
196 197 8.873186 ATTAATTAAGAAGGGAAAACGAAGGA 57.127 30.769 3.94 0.00 0.00 3.36
218 219 9.453572 AGAGATTGCAGTTGACAAGATTAATTA 57.546 29.630 0.00 0.00 0.00 1.40
219 220 8.345724 AGAGATTGCAGTTGACAAGATTAATT 57.654 30.769 0.00 0.00 0.00 1.40
220 221 7.201591 CGAGAGATTGCAGTTGACAAGATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
221 222 6.091305 CGAGAGATTGCAGTTGACAAGATTAA 59.909 38.462 0.00 0.00 0.00 1.40
222 223 5.578336 CGAGAGATTGCAGTTGACAAGATTA 59.422 40.000 0.00 0.00 0.00 1.75
223 224 4.391216 CGAGAGATTGCAGTTGACAAGATT 59.609 41.667 0.00 0.00 0.00 2.40
224 225 3.931468 CGAGAGATTGCAGTTGACAAGAT 59.069 43.478 0.00 0.00 0.00 2.40
225 226 3.243873 ACGAGAGATTGCAGTTGACAAGA 60.244 43.478 0.00 0.00 0.00 3.02
226 227 3.062763 ACGAGAGATTGCAGTTGACAAG 58.937 45.455 0.00 0.00 0.00 3.16
227 228 3.059884 GACGAGAGATTGCAGTTGACAA 58.940 45.455 0.00 0.00 0.00 3.18
228 229 2.297315 AGACGAGAGATTGCAGTTGACA 59.703 45.455 0.00 0.00 0.00 3.58
229 230 2.920490 GAGACGAGAGATTGCAGTTGAC 59.080 50.000 0.00 0.00 0.00 3.18
230 231 2.822561 AGAGACGAGAGATTGCAGTTGA 59.177 45.455 0.00 0.00 0.00 3.18
231 232 3.178267 GAGAGACGAGAGATTGCAGTTG 58.822 50.000 0.00 0.00 0.00 3.16
232 233 2.165437 GGAGAGACGAGAGATTGCAGTT 59.835 50.000 0.00 0.00 0.00 3.16
233 234 1.748493 GGAGAGACGAGAGATTGCAGT 59.252 52.381 0.00 0.00 0.00 4.40
234 235 1.066908 GGGAGAGACGAGAGATTGCAG 59.933 57.143 0.00 0.00 0.00 4.41
235 236 1.107114 GGGAGAGACGAGAGATTGCA 58.893 55.000 0.00 0.00 0.00 4.08
236 237 1.066908 CTGGGAGAGACGAGAGATTGC 59.933 57.143 0.00 0.00 0.00 3.56
237 238 1.066908 GCTGGGAGAGACGAGAGATTG 59.933 57.143 0.00 0.00 0.00 2.67
238 239 1.341482 TGCTGGGAGAGACGAGAGATT 60.341 52.381 0.00 0.00 0.00 2.40
239 240 0.257328 TGCTGGGAGAGACGAGAGAT 59.743 55.000 0.00 0.00 0.00 2.75
240 241 0.393673 CTGCTGGGAGAGACGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
241 242 0.393673 TCTGCTGGGAGAGACGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
242 243 0.038310 TTCTGCTGGGAGAGACGAGA 59.962 55.000 0.00 0.00 0.00 4.04
243 244 0.455410 CTTCTGCTGGGAGAGACGAG 59.545 60.000 0.00 0.00 0.00 4.18
244 245 0.038310 TCTTCTGCTGGGAGAGACGA 59.962 55.000 0.00 0.00 0.00 4.20
245 246 0.891373 TTCTTCTGCTGGGAGAGACG 59.109 55.000 0.00 0.00 0.00 4.18
246 247 3.625649 ATTTCTTCTGCTGGGAGAGAC 57.374 47.619 0.00 0.00 0.00 3.36
247 248 5.762179 TTTATTTCTTCTGCTGGGAGAGA 57.238 39.130 0.00 0.00 0.00 3.10
248 249 6.824305 TTTTTATTTCTTCTGCTGGGAGAG 57.176 37.500 0.00 0.00 0.00 3.20
272 273 0.320946 TCGATTCGCCGGGACTTTTT 60.321 50.000 2.18 0.00 0.00 1.94
273 274 0.107848 ATCGATTCGCCGGGACTTTT 60.108 50.000 2.18 0.00 0.00 2.27
274 275 0.529992 GATCGATTCGCCGGGACTTT 60.530 55.000 2.18 0.00 0.00 2.66
275 276 1.067582 GATCGATTCGCCGGGACTT 59.932 57.895 2.18 0.00 0.00 3.01
276 277 2.728817 GATCGATTCGCCGGGACT 59.271 61.111 2.18 0.00 0.00 3.85
277 278 2.729862 CGATCGATTCGCCGGGAC 60.730 66.667 10.26 0.00 41.69 4.46
278 279 3.973516 CCGATCGATTCGCCGGGA 61.974 66.667 18.66 0.00 46.71 5.14
280 281 4.942481 TGCCGATCGATTCGCCGG 62.942 66.667 25.00 25.00 46.71 6.13
281 282 2.416372 CTTTGCCGATCGATTCGCCG 62.416 60.000 18.66 7.38 46.71 6.46
282 283 1.276844 CTTTGCCGATCGATTCGCC 59.723 57.895 18.66 3.88 46.71 5.54
283 284 1.368137 GCTTTGCCGATCGATTCGC 60.368 57.895 18.66 12.03 46.71 4.70
296 297 2.694760 GCGAGGGAGCAAGGCTTTG 61.695 63.158 3.80 3.80 39.88 2.77
297 298 2.360475 GCGAGGGAGCAAGGCTTT 60.360 61.111 0.00 0.00 39.88 3.51
298 299 3.325753 AGCGAGGGAGCAAGGCTT 61.326 61.111 0.00 0.00 39.88 4.35
299 300 4.093291 CAGCGAGGGAGCAAGGCT 62.093 66.667 0.00 0.00 43.88 4.58
302 303 4.093291 AGGCAGCGAGGGAGCAAG 62.093 66.667 0.00 0.00 40.15 4.01
303 304 4.399395 CAGGCAGCGAGGGAGCAA 62.399 66.667 0.00 0.00 40.15 3.91
326 327 3.427598 GAAGAGAGGCGGGCCGTAC 62.428 68.421 28.82 20.55 41.95 3.67
327 328 2.274948 TAGAAGAGAGGCGGGCCGTA 62.275 60.000 28.82 5.32 41.95 4.02
328 329 2.930777 ATAGAAGAGAGGCGGGCCGT 62.931 60.000 28.82 8.62 41.95 5.68
329 330 1.749334 AATAGAAGAGAGGCGGGCCG 61.749 60.000 24.35 24.35 41.95 6.13
330 331 0.470341 AAATAGAAGAGAGGCGGGCC 59.530 55.000 0.18 0.18 0.00 5.80
331 332 1.414550 AGAAATAGAAGAGAGGCGGGC 59.585 52.381 0.00 0.00 0.00 6.13
332 333 3.892588 AGTAGAAATAGAAGAGAGGCGGG 59.107 47.826 0.00 0.00 0.00 6.13
333 334 4.022676 GGAGTAGAAATAGAAGAGAGGCGG 60.023 50.000 0.00 0.00 0.00 6.13
334 335 4.825085 AGGAGTAGAAATAGAAGAGAGGCG 59.175 45.833 0.00 0.00 0.00 5.52
335 336 5.048991 CGAGGAGTAGAAATAGAAGAGAGGC 60.049 48.000 0.00 0.00 0.00 4.70
336 337 6.059484 ACGAGGAGTAGAAATAGAAGAGAGG 58.941 44.000 0.00 0.00 0.00 3.69
337 338 6.764085 TGACGAGGAGTAGAAATAGAAGAGAG 59.236 42.308 0.00 0.00 0.00 3.20
338 339 6.539464 GTGACGAGGAGTAGAAATAGAAGAGA 59.461 42.308 0.00 0.00 0.00 3.10
339 340 6.238538 GGTGACGAGGAGTAGAAATAGAAGAG 60.239 46.154 0.00 0.00 0.00 2.85
340 341 5.589452 GGTGACGAGGAGTAGAAATAGAAGA 59.411 44.000 0.00 0.00 0.00 2.87
341 342 5.221087 GGGTGACGAGGAGTAGAAATAGAAG 60.221 48.000 0.00 0.00 0.00 2.85
342 343 4.643784 GGGTGACGAGGAGTAGAAATAGAA 59.356 45.833 0.00 0.00 0.00 2.10
343 344 4.205587 GGGTGACGAGGAGTAGAAATAGA 58.794 47.826 0.00 0.00 0.00 1.98
344 345 4.571372 GGGTGACGAGGAGTAGAAATAG 57.429 50.000 0.00 0.00 0.00 1.73
412 413 1.140804 GAAGGAGACGAGCAGAGGC 59.859 63.158 0.00 0.00 41.61 4.70
413 414 0.682855 AGGAAGGAGACGAGCAGAGG 60.683 60.000 0.00 0.00 0.00 3.69
414 415 0.738389 GAGGAAGGAGACGAGCAGAG 59.262 60.000 0.00 0.00 0.00 3.35
415 416 0.329931 AGAGGAAGGAGACGAGCAGA 59.670 55.000 0.00 0.00 0.00 4.26
416 417 0.738389 GAGAGGAAGGAGACGAGCAG 59.262 60.000 0.00 0.00 0.00 4.24
417 418 0.681564 GGAGAGGAAGGAGACGAGCA 60.682 60.000 0.00 0.00 0.00 4.26
418 419 1.720694 CGGAGAGGAAGGAGACGAGC 61.721 65.000 0.00 0.00 0.00 5.03
419 420 1.098712 CCGGAGAGGAAGGAGACGAG 61.099 65.000 0.00 0.00 45.00 4.18
420 421 1.077644 CCGGAGAGGAAGGAGACGA 60.078 63.158 0.00 0.00 45.00 4.20
421 422 1.378124 GACCGGAGAGGAAGGAGACG 61.378 65.000 9.46 0.00 45.00 4.18
422 423 0.323542 TGACCGGAGAGGAAGGAGAC 60.324 60.000 9.46 0.00 45.00 3.36
423 424 0.631753 ATGACCGGAGAGGAAGGAGA 59.368 55.000 9.46 0.00 45.00 3.71
424 425 1.036707 GATGACCGGAGAGGAAGGAG 58.963 60.000 9.46 0.00 45.00 3.69
425 426 0.335019 TGATGACCGGAGAGGAAGGA 59.665 55.000 9.46 0.00 45.00 3.36
426 427 0.461961 GTGATGACCGGAGAGGAAGG 59.538 60.000 9.46 0.00 45.00 3.46
427 428 0.461961 GGTGATGACCGGAGAGGAAG 59.538 60.000 9.46 0.00 45.00 3.46
428 429 2.591915 GGTGATGACCGGAGAGGAA 58.408 57.895 9.46 0.00 45.00 3.36
429 430 4.356979 GGTGATGACCGGAGAGGA 57.643 61.111 9.46 0.00 45.00 3.71
453 454 3.818121 TTGTTGAGTGGCCGGACCG 62.818 63.158 3.83 6.99 43.94 4.79
454 455 2.112297 TTGTTGAGTGGCCGGACC 59.888 61.111 3.83 6.37 39.84 4.46
455 456 0.818040 AAGTTGTTGAGTGGCCGGAC 60.818 55.000 5.05 0.56 0.00 4.79
456 457 0.817634 CAAGTTGTTGAGTGGCCGGA 60.818 55.000 5.05 0.00 35.46 5.14
457 458 0.817634 TCAAGTTGTTGAGTGGCCGG 60.818 55.000 0.00 0.00 37.79 6.13
458 459 1.238439 ATCAAGTTGTTGAGTGGCCG 58.762 50.000 2.11 0.00 45.96 6.13
463 464 5.451908 CGTATTGCAATCAAGTTGTTGAGT 58.548 37.500 16.86 0.00 45.96 3.41
464 465 4.853196 CCGTATTGCAATCAAGTTGTTGAG 59.147 41.667 16.86 3.41 45.96 3.02
465 466 4.517075 TCCGTATTGCAATCAAGTTGTTGA 59.483 37.500 16.86 0.00 46.81 3.18
466 467 4.793071 TCCGTATTGCAATCAAGTTGTTG 58.207 39.130 16.86 8.05 40.07 3.33
467 468 4.615912 GCTCCGTATTGCAATCAAGTTGTT 60.616 41.667 16.86 0.00 40.07 2.83
468 469 3.119849 GCTCCGTATTGCAATCAAGTTGT 60.120 43.478 16.86 0.00 40.07 3.32
469 470 3.429085 GCTCCGTATTGCAATCAAGTTG 58.571 45.455 16.86 4.70 40.90 3.16
470 471 2.095853 CGCTCCGTATTGCAATCAAGTT 59.904 45.455 16.86 0.00 35.37 2.66
471 472 1.665679 CGCTCCGTATTGCAATCAAGT 59.334 47.619 16.86 0.00 35.37 3.16
472 473 1.595489 GCGCTCCGTATTGCAATCAAG 60.595 52.381 16.86 10.12 35.37 3.02
473 474 0.376852 GCGCTCCGTATTGCAATCAA 59.623 50.000 16.86 0.00 36.51 2.57
474 475 0.742635 TGCGCTCCGTATTGCAATCA 60.743 50.000 16.86 1.88 33.80 2.57
475 476 0.376852 TTGCGCTCCGTATTGCAATC 59.623 50.000 16.86 6.99 42.59 2.67
476 477 0.808125 TTTGCGCTCCGTATTGCAAT 59.192 45.000 17.56 17.56 42.59 3.56
477 478 0.167908 CTTTGCGCTCCGTATTGCAA 59.832 50.000 9.73 0.00 42.59 4.08
478 479 0.672091 TCTTTGCGCTCCGTATTGCA 60.672 50.000 9.73 0.00 35.15 4.08
479 480 0.247695 GTCTTTGCGCTCCGTATTGC 60.248 55.000 9.73 0.00 0.00 3.56
480 481 0.373716 GGTCTTTGCGCTCCGTATTG 59.626 55.000 9.73 0.00 0.00 1.90
481 482 1.082117 CGGTCTTTGCGCTCCGTATT 61.082 55.000 9.73 0.00 38.45 1.89
482 483 1.518572 CGGTCTTTGCGCTCCGTAT 60.519 57.895 9.73 0.00 38.45 3.06
483 484 2.126228 CGGTCTTTGCGCTCCGTA 60.126 61.111 9.73 0.00 38.45 4.02
501 502 2.116736 TTTTGGACTCAAGCTGCGCG 62.117 55.000 0.00 0.00 33.98 6.86
502 503 0.030638 TTTTTGGACTCAAGCTGCGC 59.969 50.000 0.00 0.00 33.98 6.09
503 504 1.335324 CCTTTTTGGACTCAAGCTGCG 60.335 52.381 0.00 0.00 38.35 5.18
504 505 1.956477 TCCTTTTTGGACTCAAGCTGC 59.044 47.619 0.00 0.00 40.56 5.25
505 506 4.861102 ATTCCTTTTTGGACTCAAGCTG 57.139 40.909 0.00 0.00 46.14 4.24
506 507 8.829373 ATTATATTCCTTTTTGGACTCAAGCT 57.171 30.769 0.00 0.00 46.14 3.74
512 513 9.642343 GGGAGTAATTATATTCCTTTTTGGACT 57.358 33.333 11.24 0.00 46.14 3.85
513 514 9.642343 AGGGAGTAATTATATTCCTTTTTGGAC 57.358 33.333 11.24 0.00 46.14 4.02
514 515 9.862149 GAGGGAGTAATTATATTCCTTTTTGGA 57.138 33.333 11.24 0.00 44.51 3.53
515 516 9.078990 GGAGGGAGTAATTATATTCCTTTTTGG 57.921 37.037 11.24 0.00 37.88 3.28
516 517 9.640952 TGGAGGGAGTAATTATATTCCTTTTTG 57.359 33.333 11.24 0.00 37.88 2.44
520 521 8.615705 GGATTGGAGGGAGTAATTATATTCCTT 58.384 37.037 11.24 6.02 37.88 3.36
521 522 7.744068 TGGATTGGAGGGAGTAATTATATTCCT 59.256 37.037 11.24 6.82 37.88 3.36
522 523 7.928873 TGGATTGGAGGGAGTAATTATATTCC 58.071 38.462 5.50 5.50 37.23 3.01
626 627 8.692710 TGTACTACCGAATCACTCAGAATTAAT 58.307 33.333 0.00 0.00 0.00 1.40
652 653 9.667107 TTGCTGCTCATTTAGTAGTATAAAGTT 57.333 29.630 0.00 0.00 39.91 2.66
653 654 9.838339 ATTGCTGCTCATTTAGTAGTATAAAGT 57.162 29.630 0.00 0.00 39.91 2.66
658 659 9.613428 TGTTAATTGCTGCTCATTTAGTAGTAT 57.387 29.630 0.00 0.00 39.91 2.12
659 660 9.613428 ATGTTAATTGCTGCTCATTTAGTAGTA 57.387 29.630 0.00 0.00 39.91 1.82
660 661 7.921786 TGTTAATTGCTGCTCATTTAGTAGT 57.078 32.000 0.00 0.00 39.91 2.73
661 662 7.859377 CCATGTTAATTGCTGCTCATTTAGTAG 59.141 37.037 0.00 0.00 40.66 2.57
675 676 4.380531 TCTCTCCGATCCATGTTAATTGC 58.619 43.478 0.00 0.00 0.00 3.56
679 680 5.655090 TGTTACTCTCTCCGATCCATGTTAA 59.345 40.000 0.00 0.00 0.00 2.01
727 728 6.207810 TGCCGATTTAGTCCAAAGTTGTAATT 59.792 34.615 0.00 0.00 0.00 1.40
729 730 5.064558 TGCCGATTTAGTCCAAAGTTGTAA 58.935 37.500 0.00 0.00 0.00 2.41
807 808 8.553459 TTTTTGTTTTCAGCAGTTTATTCCAA 57.447 26.923 0.00 0.00 0.00 3.53
808 809 8.037758 TCTTTTTGTTTTCAGCAGTTTATTCCA 58.962 29.630 0.00 0.00 0.00 3.53
809 810 8.419076 TCTTTTTGTTTTCAGCAGTTTATTCC 57.581 30.769 0.00 0.00 0.00 3.01
813 814 9.015577 CGTTATCTTTTTGTTTTCAGCAGTTTA 57.984 29.630 0.00 0.00 0.00 2.01
815 816 7.033185 ACGTTATCTTTTTGTTTTCAGCAGTT 58.967 30.769 0.00 0.00 0.00 3.16
816 817 6.560711 ACGTTATCTTTTTGTTTTCAGCAGT 58.439 32.000 0.00 0.00 0.00 4.40
817 818 7.329582 CAACGTTATCTTTTTGTTTTCAGCAG 58.670 34.615 0.00 0.00 0.00 4.24
818 819 6.254589 CCAACGTTATCTTTTTGTTTTCAGCA 59.745 34.615 0.00 0.00 0.00 4.41
819 820 6.474102 TCCAACGTTATCTTTTTGTTTTCAGC 59.526 34.615 0.00 0.00 0.00 4.26
820 821 7.979115 TCCAACGTTATCTTTTTGTTTTCAG 57.021 32.000 0.00 0.00 0.00 3.02
821 822 8.758633 TTTCCAACGTTATCTTTTTGTTTTCA 57.241 26.923 0.00 0.00 0.00 2.69
822 823 9.683651 CTTTTCCAACGTTATCTTTTTGTTTTC 57.316 29.630 0.00 0.00 0.00 2.29
823 824 8.661257 CCTTTTCCAACGTTATCTTTTTGTTTT 58.339 29.630 0.00 0.00 0.00 2.43
824 825 8.035984 TCCTTTTCCAACGTTATCTTTTTGTTT 58.964 29.630 0.00 0.00 0.00 2.83
825 826 7.548967 TCCTTTTCCAACGTTATCTTTTTGTT 58.451 30.769 0.00 0.00 0.00 2.83
826 827 7.102847 TCCTTTTCCAACGTTATCTTTTTGT 57.897 32.000 0.00 0.00 0.00 2.83
827 828 7.704899 ACTTCCTTTTCCAACGTTATCTTTTTG 59.295 33.333 0.00 0.00 0.00 2.44
828 829 7.778083 ACTTCCTTTTCCAACGTTATCTTTTT 58.222 30.769 0.00 0.00 0.00 1.94
829 830 7.342769 ACTTCCTTTTCCAACGTTATCTTTT 57.657 32.000 0.00 0.00 0.00 2.27
830 831 6.954487 ACTTCCTTTTCCAACGTTATCTTT 57.046 33.333 0.00 0.00 0.00 2.52
831 832 8.631480 ATTACTTCCTTTTCCAACGTTATCTT 57.369 30.769 0.00 0.00 0.00 2.40
832 833 8.512138 CAATTACTTCCTTTTCCAACGTTATCT 58.488 33.333 0.00 0.00 0.00 1.98
833 834 7.753580 CCAATTACTTCCTTTTCCAACGTTATC 59.246 37.037 0.00 0.00 0.00 1.75
834 835 7.599171 CCAATTACTTCCTTTTCCAACGTTAT 58.401 34.615 0.00 0.00 0.00 1.89
835 836 6.515365 GCCAATTACTTCCTTTTCCAACGTTA 60.515 38.462 0.00 0.00 0.00 3.18
836 837 5.737922 GCCAATTACTTCCTTTTCCAACGTT 60.738 40.000 0.00 0.00 0.00 3.99
837 838 4.261867 GCCAATTACTTCCTTTTCCAACGT 60.262 41.667 0.00 0.00 0.00 3.99
838 839 4.234574 GCCAATTACTTCCTTTTCCAACG 58.765 43.478 0.00 0.00 0.00 4.10
839 840 4.234574 CGCCAATTACTTCCTTTTCCAAC 58.765 43.478 0.00 0.00 0.00 3.77
840 841 3.257127 CCGCCAATTACTTCCTTTTCCAA 59.743 43.478 0.00 0.00 0.00 3.53
841 842 2.823154 CCGCCAATTACTTCCTTTTCCA 59.177 45.455 0.00 0.00 0.00 3.53
842 843 2.416836 GCCGCCAATTACTTCCTTTTCC 60.417 50.000 0.00 0.00 0.00 3.13
843 844 2.230266 TGCCGCCAATTACTTCCTTTTC 59.770 45.455 0.00 0.00 0.00 2.29
844 845 2.243810 TGCCGCCAATTACTTCCTTTT 58.756 42.857 0.00 0.00 0.00 2.27
845 846 1.917872 TGCCGCCAATTACTTCCTTT 58.082 45.000 0.00 0.00 0.00 3.11
846 847 1.917872 TTGCCGCCAATTACTTCCTT 58.082 45.000 0.00 0.00 0.00 3.36
847 848 1.917872 TTTGCCGCCAATTACTTCCT 58.082 45.000 0.00 0.00 0.00 3.36
848 849 2.734276 TTTTGCCGCCAATTACTTCC 57.266 45.000 0.00 0.00 0.00 3.46
873 874 6.601217 CCATGAAAAAGGTTTTCCCTCAAAAA 59.399 34.615 10.17 0.00 45.47 1.94
874 875 6.118852 CCATGAAAAAGGTTTTCCCTCAAAA 58.881 36.000 10.17 0.00 45.47 2.44
875 876 5.397334 CCCATGAAAAAGGTTTTCCCTCAAA 60.397 40.000 10.17 0.00 45.47 2.69
876 877 4.102367 CCCATGAAAAAGGTTTTCCCTCAA 59.898 41.667 10.17 0.00 45.47 3.02
877 878 3.645687 CCCATGAAAAAGGTTTTCCCTCA 59.354 43.478 10.17 0.87 45.47 3.86
878 879 3.646162 ACCCATGAAAAAGGTTTTCCCTC 59.354 43.478 10.17 0.00 45.47 4.30
880 881 4.431416 AACCCATGAAAAAGGTTTTCCC 57.569 40.909 10.17 0.00 41.07 3.97
885 886 5.188751 TCTGAACAAACCCATGAAAAAGGTT 59.811 36.000 0.00 0.00 45.79 3.50
897 898 5.243730 TCAATCTTCCAATCTGAACAAACCC 59.756 40.000 0.00 0.00 0.00 4.11
941 946 1.483316 TAGCCGTGATCGTAAATGCG 58.517 50.000 0.00 0.00 35.01 4.73
943 948 8.639428 GCATATATATAGCCGTGATCGTAAATG 58.361 37.037 0.00 0.00 35.01 2.32
946 951 7.136772 GTGCATATATATAGCCGTGATCGTAA 58.863 38.462 11.95 0.00 35.01 3.18
947 952 6.293790 GGTGCATATATATAGCCGTGATCGTA 60.294 42.308 11.95 0.00 35.01 3.43
948 953 5.507482 GGTGCATATATATAGCCGTGATCGT 60.507 44.000 11.95 0.00 35.01 3.73
949 954 4.917998 GGTGCATATATATAGCCGTGATCG 59.082 45.833 11.95 0.00 0.00 3.69
950 955 5.842907 TGGTGCATATATATAGCCGTGATC 58.157 41.667 11.95 0.00 0.00 2.92
955 960 7.792374 AAAATCTGGTGCATATATATAGCCG 57.208 36.000 11.95 0.00 0.00 5.52
983 988 9.471084 CGACTACCATATATGTGTTGTTTGATA 57.529 33.333 11.73 0.00 0.00 2.15
986 991 7.398746 CACGACTACCATATATGTGTTGTTTG 58.601 38.462 11.73 12.82 0.00 2.93
987 992 6.036735 GCACGACTACCATATATGTGTTGTTT 59.963 38.462 11.73 5.52 0.00 2.83
988 993 5.522460 GCACGACTACCATATATGTGTTGTT 59.478 40.000 11.73 1.27 0.00 2.83
989 994 5.047847 GCACGACTACCATATATGTGTTGT 58.952 41.667 11.73 14.09 0.00 3.32
990 995 4.447724 GGCACGACTACCATATATGTGTTG 59.552 45.833 11.73 12.25 0.00 3.33
992 997 3.639561 TGGCACGACTACCATATATGTGT 59.360 43.478 11.73 11.00 0.00 3.72
993 998 4.251543 TGGCACGACTACCATATATGTG 57.748 45.455 11.73 5.92 0.00 3.21
994 999 4.948341 TTGGCACGACTACCATATATGT 57.052 40.909 11.73 3.03 35.42 2.29
995 1000 6.427150 GTTTTTGGCACGACTACCATATATG 58.573 40.000 5.68 5.68 35.42 1.78
996 1001 5.529800 GGTTTTTGGCACGACTACCATATAT 59.470 40.000 0.00 0.00 35.42 0.86
997 1002 4.877251 GGTTTTTGGCACGACTACCATATA 59.123 41.667 0.00 0.00 35.42 0.86
998 1003 3.692593 GGTTTTTGGCACGACTACCATAT 59.307 43.478 0.00 0.00 35.42 1.78
999 1004 3.075884 GGTTTTTGGCACGACTACCATA 58.924 45.455 0.00 0.00 35.42 2.74
1000 1005 1.883926 GGTTTTTGGCACGACTACCAT 59.116 47.619 0.00 0.00 35.42 3.55
1001 1006 1.310904 GGTTTTTGGCACGACTACCA 58.689 50.000 0.00 0.00 0.00 3.25
1002 1007 1.310904 TGGTTTTTGGCACGACTACC 58.689 50.000 0.00 0.00 0.00 3.18
1003 1008 2.550606 TCATGGTTTTTGGCACGACTAC 59.449 45.455 0.00 0.00 0.00 2.73
1027 1056 3.830192 GGGAGCTTGCCAATGCCG 61.830 66.667 0.00 0.00 36.33 5.69
1068 1097 2.114051 GTCGGAGGAGACGAGGACC 61.114 68.421 0.00 0.00 41.50 4.46
1086 1115 0.803117 TGTCGTCTAGAGTGGAAGCG 59.197 55.000 0.00 0.00 0.00 4.68
1121 1150 0.449388 GATGTCCTTCTTGCTTGCCG 59.551 55.000 0.00 0.00 0.00 5.69
1122 1151 0.449388 CGATGTCCTTCTTGCTTGCC 59.551 55.000 0.00 0.00 0.00 4.52
1224 1253 0.103937 CCTCTGCTCGGGTCATCTTC 59.896 60.000 0.00 0.00 0.00 2.87
1238 1267 2.892425 GGATGTTCGCGGCCTCTG 60.892 66.667 6.13 0.00 0.00 3.35
1576 1605 4.740902 TGGACTCATAGCTATTAGCCAGA 58.259 43.478 19.00 7.03 43.77 3.86
1581 1610 9.887629 AATGATCATTGGACTCATAGCTATTAG 57.112 33.333 20.11 12.48 0.00 1.73
1584 1613 7.610692 CCAAATGATCATTGGACTCATAGCTAT 59.389 37.037 22.30 0.00 0.00 2.97
1586 1615 5.768662 CCAAATGATCATTGGACTCATAGCT 59.231 40.000 22.30 0.08 0.00 3.32
1587 1616 5.766670 TCCAAATGATCATTGGACTCATAGC 59.233 40.000 22.30 0.00 0.00 2.97
1588 1617 7.997773 ATCCAAATGATCATTGGACTCATAG 57.002 36.000 27.54 11.90 33.82 2.23
1614 1647 4.321230 GCAGGTTCCAAGAGTTTATTGGTG 60.321 45.833 4.75 0.00 46.11 4.17
1745 1792 8.568794 GGAGTATTTCCATTCAATAGGCTTTAC 58.431 37.037 0.00 0.00 46.01 2.01
1747 1794 7.588497 GGAGTATTTCCATTCAATAGGCTTT 57.412 36.000 0.00 0.00 46.01 3.51
1815 2061 0.588252 CCATTTCCTCCATTAGCGCG 59.412 55.000 0.00 0.00 0.00 6.86
1821 2067 2.391678 GCCACATCCATTTCCTCCATT 58.608 47.619 0.00 0.00 0.00 3.16
1860 2109 7.002250 TCTTATGGCATCAGATCTCCTAAAG 57.998 40.000 1.65 0.00 0.00 1.85
1942 2191 8.705594 TGGATACTATTTTTCTCCTCTGGTTAG 58.294 37.037 0.00 0.00 37.61 2.34
1944 2193 7.510675 TGGATACTATTTTTCTCCTCTGGTT 57.489 36.000 0.00 0.00 37.61 3.67
1948 2197 6.383147 TCGGTTGGATACTATTTTTCTCCTCT 59.617 38.462 0.00 0.00 37.61 3.69
1951 2200 6.346896 ACTCGGTTGGATACTATTTTTCTCC 58.653 40.000 0.00 0.00 37.61 3.71
1954 2203 7.120138 TGGAAACTCGGTTGGATACTATTTTTC 59.880 37.037 0.00 0.00 37.61 2.29
1967 2216 0.306533 CGGTTGTGGAAACTCGGTTG 59.693 55.000 0.00 0.00 0.00 3.77
1972 2221 2.265904 GGGCCGGTTGTGGAAACTC 61.266 63.158 1.90 0.00 0.00 3.01
1973 2222 2.203437 GGGCCGGTTGTGGAAACT 60.203 61.111 1.90 0.00 0.00 2.66
1974 2223 1.677637 TTTGGGCCGGTTGTGGAAAC 61.678 55.000 1.90 0.00 0.00 2.78
1975 2224 1.381327 TTTGGGCCGGTTGTGGAAA 60.381 52.632 1.90 0.00 0.00 3.13
2000 2282 1.076777 CCCCAGATTTGATGCGGGT 60.077 57.895 0.00 0.00 34.89 5.28
2007 2289 2.488891 CCCATATTCGCCCCAGATTTGA 60.489 50.000 0.00 0.00 0.00 2.69
2011 2293 0.475632 TCCCCATATTCGCCCCAGAT 60.476 55.000 0.00 0.00 0.00 2.90
2038 2346 3.803082 CCGATGTTGCAGGCACGG 61.803 66.667 6.64 6.64 34.77 4.94
2039 2347 2.741985 TCCGATGTTGCAGGCACG 60.742 61.111 0.00 0.00 0.00 5.34
2042 2350 1.375908 TCAGTCCGATGTTGCAGGC 60.376 57.895 0.00 0.00 0.00 4.85
2043 2351 1.021390 GGTCAGTCCGATGTTGCAGG 61.021 60.000 0.00 0.00 0.00 4.85
2044 2352 2.460330 GGTCAGTCCGATGTTGCAG 58.540 57.895 0.00 0.00 0.00 4.41
2045 2353 4.693532 GGTCAGTCCGATGTTGCA 57.306 55.556 0.00 0.00 0.00 4.08
2054 2362 3.851128 GGGCCTAGCGGTCAGTCC 61.851 72.222 0.84 0.00 36.31 3.85
2057 2365 4.514577 CACGGGCCTAGCGGTCAG 62.515 72.222 0.84 0.00 36.31 3.51
2072 2380 0.385974 GGATATGCGCGAATTGGCAC 60.386 55.000 12.10 3.25 42.76 5.01
2073 2381 1.840630 CGGATATGCGCGAATTGGCA 61.841 55.000 12.10 5.63 44.29 4.92
2074 2382 1.154413 CGGATATGCGCGAATTGGC 60.154 57.895 12.10 1.78 0.00 4.52
2075 2383 1.154413 GCGGATATGCGCGAATTGG 60.154 57.895 25.73 0.00 0.00 3.16
2077 2385 2.325082 GGGCGGATATGCGCGAATT 61.325 57.895 30.97 0.00 38.07 2.17
2078 2386 2.742372 GGGCGGATATGCGCGAAT 60.742 61.111 30.97 7.93 38.07 3.34
2083 2391 2.883828 AAGGAGGGGCGGATATGCG 61.884 63.158 12.80 12.80 35.06 4.73
2084 2392 1.302832 CAAGGAGGGGCGGATATGC 60.303 63.158 0.00 0.00 0.00 3.14
2085 2393 1.302832 GCAAGGAGGGGCGGATATG 60.303 63.158 0.00 0.00 0.00 1.78
2086 2394 2.529744 GGCAAGGAGGGGCGGATAT 61.530 63.158 0.00 0.00 0.00 1.63
2087 2395 3.168528 GGCAAGGAGGGGCGGATA 61.169 66.667 0.00 0.00 0.00 2.59
2092 2400 4.432741 GGTCTGGCAAGGAGGGGC 62.433 72.222 0.00 0.00 0.00 5.80
2093 2401 2.935481 TGGTCTGGCAAGGAGGGG 60.935 66.667 0.00 0.00 0.00 4.79
2094 2402 2.673523 CTGGTCTGGCAAGGAGGG 59.326 66.667 0.00 0.00 0.00 4.30
2095 2403 2.045536 GCTGGTCTGGCAAGGAGG 60.046 66.667 0.00 0.00 0.00 4.30
2096 2404 2.045536 GGCTGGTCTGGCAAGGAG 60.046 66.667 0.00 0.00 0.00 3.69
2097 2405 3.650950 GGGCTGGTCTGGCAAGGA 61.651 66.667 0.00 0.00 0.00 3.36
2105 2413 1.078656 AGAAGAGAAGAGGGCTGGTCT 59.921 52.381 0.00 0.00 0.00 3.85
2140 2448 1.210870 GACCGTTTGCGACTGTACAA 58.789 50.000 0.00 0.00 41.33 2.41
2141 2449 0.102663 TGACCGTTTGCGACTGTACA 59.897 50.000 0.00 0.00 41.33 2.90
2142 2450 1.191647 CTTGACCGTTTGCGACTGTAC 59.808 52.381 0.00 0.00 41.33 2.90
2148 2456 0.878523 CTGACCTTGACCGTTTGCGA 60.879 55.000 0.00 0.00 41.33 5.10
2151 2459 0.307760 GTGCTGACCTTGACCGTTTG 59.692 55.000 0.00 0.00 0.00 2.93
2154 2462 1.768684 ATGGTGCTGACCTTGACCGT 61.769 55.000 0.00 0.00 43.58 4.83
2187 2495 6.971602 TCGATGATCTAGAAGTAATGACCAC 58.028 40.000 0.00 0.00 0.00 4.16
2219 2527 1.768275 TCATAGCCATCATTCCACGGT 59.232 47.619 0.00 0.00 0.00 4.83
2220 2528 2.224378 ACTCATAGCCATCATTCCACGG 60.224 50.000 0.00 0.00 0.00 4.94
2222 2530 3.144506 CCACTCATAGCCATCATTCCAC 58.855 50.000 0.00 0.00 0.00 4.02
2265 2573 1.519408 TGCCCTTCGCACTAAGAAAC 58.481 50.000 0.00 0.00 44.64 2.78
2276 2584 1.736696 GCCAACATTGATTGCCCTTCG 60.737 52.381 0.00 0.00 0.00 3.79
2280 2588 1.134907 CAGAGCCAACATTGATTGCCC 60.135 52.381 0.00 0.00 0.00 5.36
2284 2592 4.401022 TCTTCACAGAGCCAACATTGATT 58.599 39.130 0.00 0.00 0.00 2.57
2290 2598 5.164620 TCATATTCTTCACAGAGCCAACA 57.835 39.130 0.00 0.00 0.00 3.33
2292 2600 5.645067 CAGTTCATATTCTTCACAGAGCCAA 59.355 40.000 0.00 0.00 0.00 4.52
2294 2602 5.064452 CACAGTTCATATTCTTCACAGAGCC 59.936 44.000 0.00 0.00 0.00 4.70
2295 2603 5.871524 TCACAGTTCATATTCTTCACAGAGC 59.128 40.000 0.00 0.00 0.00 4.09
2298 2606 6.034363 CGAGTCACAGTTCATATTCTTCACAG 59.966 42.308 0.00 0.00 0.00 3.66
2307 2624 2.497675 ACAGCCGAGTCACAGTTCATAT 59.502 45.455 0.00 0.00 0.00 1.78
2316 2633 1.641577 GGTATGAACAGCCGAGTCAC 58.358 55.000 0.00 0.00 0.00 3.67
2355 2746 0.606604 GGTTTAGTCTCACCTCGCCA 59.393 55.000 0.00 0.00 0.00 5.69
2356 2747 0.108281 GGGTTTAGTCTCACCTCGCC 60.108 60.000 1.97 0.00 33.09 5.54
2366 2757 1.001764 CGGGGTTGGGGGTTTAGTC 60.002 63.158 0.00 0.00 0.00 2.59
2401 2792 4.041723 GGTCAAACAGTGCACACAAATAC 58.958 43.478 21.04 9.95 0.00 1.89
2481 2872 3.583806 CGGAATTTTGCTATTTGCCACA 58.416 40.909 0.00 0.00 42.00 4.17
2484 2875 3.186909 GACCGGAATTTTGCTATTTGCC 58.813 45.455 9.46 0.00 42.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.