>input_sequence_76376
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--------------------------------------------ATGGTAG---------------------TCGTGCC-
--AAAAACCATGATGCGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTCCTCCTCTTGGTCCTCGTCTCCTCCGACGCTTC
CACTCTAGACGACACATGCAAGTCCGTCGCGGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTTCTTCCAGG
GCGACAGCGCCAGCGCCACCGCGGACAGGCGCGGCCTCGTCGTCATCGCCACGAAGATGACCCGAGCAGAGGCCGCGAAC
ATCCGCAAGCGCATCGATGCCCTCAAGGCCTCGGTGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGCCGCATGCA
CTACACGGCGGCGCTGAAATGGCTCGAAGCCGCGGCGGAGGGCGTCAAGTCGGGTAATTTGCAGGACGCGAAGACGAACC
TCACGGGCGTGATATTGGGCACCGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGCGTCGTGTCGCCGCTGGCCGCCGAG
GACGCCGAGTTCTCCAAGGGCTGCTCCATCGCTCTCGCCATAACGACCATGTTGTAG-----------------------
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>chr2D_1_TraesCS2D01G452600
ACTGCTCCCGCAACCTACGCTCGGGTTACTGTTACTCTTTCCGTCAGTTTATTCCTTTCCTCGTTGCATGCATCCTTAAA
TTAGACCTCCTCACGCGCGCCGCCACACCAGACCGGCCGCGCGCTACCGCAAAACAAACAGGCACGGGGCGTACGTGAGG
TCAACATGACGCCTACTCAATTCATTTTTCGATTCTTCCTTCGTTTTCCCTTCTTAATTAATTAATCTTGTCAACTGCAA
TCTCTCGTCTCTCCCAGCAGAAGAAATAAAAAAAAAAGTCCCGGCGAATCGATCGGCAAAGCCTTGCTCCCTCGCTGCCT
GCCCACGTACGGCCCGCCTCTCTTCTATTTCTACTCCTCGTCACCCGCCGTTGCCGTACGTCCCGGCCGCTGCAGCCGCC
CGGACCCGGACCGCCTCTGCTCGTCTCCTTCCTCTCCGGTCATCACCGCCGTCCGGTCCGGCCACTCAACAACTTGATTG
CAATACGGAGCGCAAAGACCGCGCGCAGCTTGAGTCCAAAAAGGAATATAATTACTCCCTCCAATCCATATTAATTCTTA
GTGATAAGTACAACTTTATACTAAATGAGCAACAATTAACATGGATTGGAGACAATAATGATCCATATTAATTCTGAGTG
ATTCGGTAGTACAACTTTATACTACTAAATGAGCAGCAATTAACATGGATCGGAGAGAGTAACAATCCATATTAATTCTC
GGTGATTAATTACAACTTTGGACTAAATCGGCAACAATTAATATGGATCAATGGAGTAATTTATTAATAGCAAAATACAA
TATTTTTTTGGAATAAACTGCTGAAAACAAAAAGATAACGTTGGAAAAGGAAGTAATTGGCGGCAAAAAATTTTTTTTGA
GGGAAAACCTTTTTCATGGGTTTGTTCAGATT----GGAAGATTGATATACTCATAAGGTATTATCGCATTTACGATCAC
GGCTATATATATGCACCAGATTTTTGTTATCAAACAACACATATATGGTAG---------------------TCGTGCC-
--AAAAACCATGATGCGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTCCTCCTCTTGGTCCTCGTCTCCTCCGACGCTTC
CACTCTAGACGACACATGCAAGTCCGTCGCGGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTTCTTCCAGG
GCGACAGCGCCAGCGCCACCGCGGACAGGCGCGGCCTCGTCGTCATCGCCACGAAGATGACCCGAGCAGAGGCCGCGAAC
ATCCGCAAGCGCATCGATGCCCTCAAGGCCTCGGTGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGCCGCATGCA
CTACACGGCGGCGCTGAAATGGCTCGAAGCCGCGGCGGAGGGCGTCAAGTCGGGTAATTTGCAGGACGCGAAGACGAACC
TCACGGGCGTGATATTGGGCACCGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGCGTCGTGTCGCCGCTGGCCGCCGAG
GACGCCGAGTTCTCCAAGGGCTGCTCCATCGCTCTCGCCATAACGACCATGTTGTAGCTAAGCTAGCCGCCGAGGATGTG
TGAATCTGGCTAATAGCTATGAGTCCA----ATGATCATTTGGATCCACC-AATAAACTCTTGGAACCTGCAATTTCAGA
TC--------TTGCAAGTATGTTTGGACGGAATTTTTGTTTTCTTATAGAA-----TTGAATTACTATTTCTCTGGAGCT
TATAGAATTAATTTTGTGATTTCCTTTTTTTGTAA-AGCCTATTGAATGGAAATACTCCATCTGTCCATATTTACATGCA
TG------------------------------------------------------------------------------
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---------------------------------------GCGCACTG-TCTGCGTACGATCGCGCTAATGGAGGA---AA
TGGATGTGGCCCGTTAATGTTCATCCTTCTTTAGGAGATCTGATGCCATAAGAGTATCTACAACCAGACCCCCGTATCGG
CCCCAAATGCTCGAGCAGGCTGCGCGGTCACTAACCAGAGGAGAAAAATAGTATCCAACCGAGT----------------
-----------------TTCCACAACCGGCCCAAACGCCTGACCCGCATCAAATCT------------------------
--GGGGCGAATATGGGGACGCCCGGCCGTGCCTGCAACATCGGACTGACCGCTAGGCCCGTGCCAATTCGCGCATATCCG
CCCCTCCTTGCCAGACCAGCCCTCTTCTCTTCTTTGTTTGTCCTCGTTTGTACAGTCGCAAACGGTCAAGGTCAGCACCA
TCGGACGCCGCCCCGTGGTCATTACTTCTAGATCATCGATGAATTCACCGTGGAATGATGGCTATGAGTGGGAAAATGAT
TTAACTTAAAAAGTTTCTTAGTGCGAAGGGCAATCAATGTTGGCTC---------TGTGAAGAATATGAACTGTGACTCG
GCTGTTCATACCCTTCACG-------------------------------------------------------------
-------------TCGCTCCTCGTGTGGCGAGGTGAGACTAAACCCCCAACCCCGCCGGACCTGAAATTTTGTATTTGTG
TGCACTGTTTGACCAAAATGATCGACGTGCATGTCTTTGCATGTATTTGATGTTTTAAAAATAGGGTTTATTGTGGCAAA
TAGCAAAATTCCGGTCACTTTGTGTTTGTGTTTG------CATGTGAGGCATGTCCGGTCACGTT
>chr2A_518
AAAAGGGAAAC---------------------------------------------------------------------
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-----------------------------------------------ATAATTACTCCCTCCAATCCATATTAATTCTTA
GTGATAAGTACAACTTTATACTAAATGAGCAACAATTAACATGGATTGGAGACAATAATGATCCATGTTAATTCTGAGTG
ATTCAGTACAACTCTA------TACTAAATGAGCAACAACTAACATGGATCGGAGAGAGTAATGTTCCATATTAATTCTC
GGTGATTTAATACAACTTTGGACTAAATCGGCGATAATTAATATGGATCGGGGGAGTAATTTATTAATAGCAGAACATAA
TATATTTGCAATACAT----------------------------------------------------------------
------ACCTTTTTCATTGGTTTGTTCAAATT----GGAAGATTGATATACTCATGGGGTATTTTTGTATCA---ATCAT
GGCTATATATATGCACCATCTACAAACGATTTGTTA------------TAG---------------------TCGTGCC-
--AAAAACCATGATGAGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTGCTCCTCTTCGTCCTCGTCTCCTCCGAGGCTTC
CACTCTAGAGGACACATGCAAGTCCGTCGGCGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTTCTTCCAGG
GCGACAGCGCCAGCGCCACCGCGGACAGGCACGGCCTCGTCGTCATCGCCACTAAGATCACCCGAGGAGAGGCCGCGAAC
ACCCGCAAGCGCATCGATGCCCTCAAGGCCTCGGTGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGCCGGATGCA
CTACACGGCGGCGCTGAAATGGCTCGAAGCCGCCGCGGAGGGCGTCAAGTCGGGTAATTTGCAGGACGCGAAGACGAACC
TCACGGCCGTGATATTGGGCACGGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGCGTCGTGTCGCCGCTGGCCGCCGAG
GACGCTGAGTTCTCCAAGGGCTGCTCCATCGCGCTCGCCATAACCACCATGTTGTAGCTAACG-----------------
------TGGTAACTGCTCTAGCTGCGAGTCCATGATCATTTGGATCGACCAAATAAACTCTTGGAACCTGCAATTTCAAA
TCAGTGAACTTTGCAAATATGTTTGGACGGAAATTTTGTTTCCTTATAGAATTGCCTTGAATTATTATTTTTCTGGAGCT
TATAGAATTAATTTTATGATTTCTTATTTTTCTGG-AGCTTACAGAATAGAAATACTCCATCTGTCCATATTTACATGCA
TG------------------------------------------------------------------------------
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---------------------------------------GCGCACGGTTTTATGTACGATGGCGCTGATGGAGGA---AA
TGGATGTGCCCCATTAATGTTCATCCTTATTTAGGAGATCTGATGCCACAAGATTATGTATAACCAGACTCCCATATCGT
TCCTAAATGCTCGAGCAGGTTGCCCGGTCATTGACCGGACGAAAAAAATAGTATCAAACCAGCATTGACCGGACGAAAAA
AATAGTATCAAACCAGGTTTCC--ACCAGCCCAAACGCCGGGCCCGCACCAATTTTTTTATTCTTTTTTGGGTGGTGGAG
GGGGGGGGGGTATGGGGACGTCCGGATGT----GCAACATCAGAATGATCGCTAGGGCCCGCGCGCCCATATTCACTCCC
A----CCTTGCCGGACCAGCCCTCTTCTCTTCTTTGTTTGTCCTCGTCCATACAGCCGTAATCGGTCAAGGTCACCACTA
CCGGACGCCGCCCCATGGTCATTACTTCTAGATCATCGATGAATTCGTCATGGAATGATGGCTATGAGTGGAAAAATGAT
TTAACTTAAAAACTTTCTAAATGTGAACGGCCATCAACGCTCACTTTTGTGAAGTTGTGAAGAGTATGAACTATGACTCG
GCTGTTCATACCCCTCACAAAGGGGGCATTGATGGTCATACTGAGAGAGAAGATTACTGCTTTTGCATGATGCGGCTATC
TAAGCCGGCCGCATCGCTCCTCGTGCAGCGAGGTGACACTAAACCCCCAACCCCGCCGGACCTGAAATTTTCTATTTGTG
TGCACTGTTTGACCAAAATGATCGACGTGCATGTGTTTTCATGTATTTGATGTTTCAAAAATACGGTTTATGATTGCAAA
TGGCAAAATTCCGGTTTCTTTGTGTTTGTGTTTG------CA--TGAGGCATGTCCGGTCACTTT
>chr2B_887
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------ACCTTTTTCATTGGTTTGTTCAAATTAATTGGAAGATTGATATACTCATGAGGTATTTTTGTATCA---ATCAT
GGCTATATATATGCACCATCCGCATATGATTTGTTA------------TAAAAAACAAGACATATACGACAATCGTGCCG
AAAAAAACCATGATGAGGCATTGGCAAGCTCCCTCCTGTCTCCTCGTCCTCCTCTTCGCCCTCGTTTCCTCCGAGGCTTC
CACTCTAGACGATACATGCAGGTCCATCGGCGCAAGCAAGAAGGACATCGGCTACGACTACTGCATCAAGTTCTTCCAGG
CCGACAACGCCAGTGCGACCGCGGACAGGCGCGGCCTTGTCGTCATCGCCACTAAGATCACCCGAGAAGAGGCCGCGAAC
ATCCGGAAGCGGATCGATGCCCTCAAGGCCTCGGGGACGGACAAGAAGGTCAGCGGGCGCCTCTCCGACTGCCGCATGCA
CTACACGAACGCGCTGAAATGGCTCGAAGCCGCGGCGGAGGGCGTCAAGTCGGGTAATTTGCAGAAGGCGAAGATGAACC
TCACAGGCGTGATATTGGGCACCGACACCTGCGAGGAAAGGTTCCGCGAGCTGGGTGTCGTGTCGCCGCTGGCCGCCGAG
GACGCCGAGTTCTCCAAGGGCTGCTCTATCGCTCTCGCCATAACGACCATGTTGTAGCTA-GCTAGCCGCCGAGGATGTG
TGAACCTGGTAACAGCTCTGGCTTCGAGTCCATGATCATTTGGATCGACC-AATAAACTCTTGGAACCTGCAATTCCAGA
TCAGTGAACTTTGCAAGTATGTTTGGAGGAAAATCCTGTTTTCTTATAGAA-----TTGAATTATTATC------GAGCT
TATAGAATTAATTTTGTGATTTCCTTTTTTTTCTAAAGCTTATAGAATGGAAATACTCCATCTGTCCATGTTTACATGCA
GCCACACTTGTCTTATAGGGGTCCTAACTGGGTTTAGTGCCATGCCTCTTGCCGGTGCCTTCAAAGAGGGAAGGTCATGG
ACGCGCGCTACCCTGATCAGATAGACAGACATAAGCCTTGCGAGCCCGAGTTTGGTTATGTGCACATGTCCCCGTTTGAG
ATCGTTTATTGTTTTGCCACGATGATGGCCATTGAGTGTGCGCACAG-TTTGCGTACGATTGTGGTGATGGAGGAAATAA
TGGATTTGGCCCATTAATGTTCGTC-TTATTTAGGAGATCTGATGCCATAAGAGTATCTACAACCAGACCCTCGGATCCG
CCATAAACGCTCGAGCGGGCTGCCCGT-----------------------------------CACTGATCGGACGAAAAA
AGTAGTATCCAACCGGGTTCCACAGCCGGCCCAAACGTCTGGACTGCCCGTGCACTGT----------------------
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-------TTTGACCAAAATGATCGACACACATGTTTTTACATGTATTTGATGTTTTAAAAATAGGGTTTATGGTTGCAAA
TAGCAAAATTCTGGTCACTTTGTGTTTGTGTTTGTGTTTGCATGTGAGGCATGTCCGATCACTTT
>SNPs
-SSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
------------------------------------------------------------------S-------------
----S---SS--SSSSSSSSSS-------------S---S----------------------SSS---------------
-------S-S----------------------S-S--------------SSS--------------------S--S-S--
---S---SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----------S----------S--------------------------S-------S-S-S--SSSSS----S
------------------SS-SSS-S-S--SSSSS-SSSSSSSSSSSS--------------------------------
---------------S----------------------------------------S-----------------S-----
-----------------------------SS-------------------------------------------------
----------------------------------------------------S-----S-------S-------------
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----S----SS-S-SSSSSS-SS--S--------------------S---------------------------------
--------------------------------S-------------------------------S-----S---------
-------------------------------S-S-----S---S------------------------------------
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---------------------------------------------S---S----------S-----S-------------
------------S---------------S---------------------------------------------------
---S-------------------S------S-S---S--S--S------------S----SSSS----------------
-----------------------------------------S------S---S---------------------------
------S-SS----------S----SS--SSSS--------S--S---S-------S--SSSS-SSSSSSSSSSSS---S
SSSSS-------S----------------------------------SSS-----S--S--S------------S---S-
S-------------S-------------------------------SS-S---------------------S--------
------------S-----S-S--S---S---S-----S-S-SS--S-----------------S--------S-------
-------------S----S-------------------------------------------------------------
-------------------------SS---------S----------------------------------S--------
----------------------------------S---S--------------------------------S--S-----
--------------------------------------------------------------S--
>forward_76
--------------------------------------------------------TTCCTCGTTGCATGCATCCT----
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>reverse_1253
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----------------------------------------------------GAAGATGACCCGAGCAGAGG--------
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>forward_262
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--TCTCGTCTCTCCCAGCAGAA----------------------------------------------------------
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>reverse_2449
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------------------------------------------------TGTACAGTCGCAAACGGTCA------------
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