Multiple sequence alignment - TraesCS2D01G418100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G418100 chr2D 100.000 2657 0 0 1 2657 532172587 532175243 0.000000e+00 4907.0
1 TraesCS2D01G418100 chr2D 88.315 368 38 4 2291 2657 584251893 584252256 1.130000e-118 436.0
2 TraesCS2D01G418100 chr2D 90.435 115 11 0 1295 1409 546400153 546400267 4.580000e-33 152.0
3 TraesCS2D01G418100 chr2D 95.833 48 1 1 1727 1774 345866376 345866330 2.840000e-10 76.8
4 TraesCS2D01G418100 chr2B 94.121 1956 54 14 1 1898 632041257 632043209 0.000000e+00 2918.0
5 TraesCS2D01G418100 chr2B 90.463 367 33 2 2291 2657 5780862 5781226 1.430000e-132 483.0
6 TraesCS2D01G418100 chr2B 88.710 186 14 2 1892 2077 632157838 632158016 1.240000e-53 220.0
7 TraesCS2D01G418100 chr2B 97.087 103 3 0 2189 2291 632158162 632158264 9.780000e-40 174.0
8 TraesCS2D01G418100 chr2B 93.069 101 7 0 1297 1397 599936557 599936657 5.930000e-32 148.0
9 TraesCS2D01G418100 chr2B 76.887 212 35 9 1762 1966 577783452 577783248 1.010000e-19 108.0
10 TraesCS2D01G418100 chr2A 92.937 1161 56 13 938 2077 676479055 676480210 0.000000e+00 1666.0
11 TraesCS2D01G418100 chr2A 91.152 486 30 10 1 474 676478469 676478953 0.000000e+00 647.0
12 TraesCS2D01G418100 chr2A 91.667 132 10 1 478 609 10153295 10153425 5.840000e-42 182.0
13 TraesCS2D01G418100 chr2A 88.489 139 14 1 473 609 22594710 22594848 1.640000e-37 167.0
14 TraesCS2D01G418100 chr2A 89.394 132 14 0 475 606 44181108 44180977 1.640000e-37 167.0
15 TraesCS2D01G418100 chr2A 94.000 100 6 0 2103 2202 541385636 541385735 4.580000e-33 152.0
16 TraesCS2D01G418100 chr2A 91.860 86 7 0 2206 2291 676710769 676710854 1.290000e-23 121.0
17 TraesCS2D01G418100 chr2A 75.349 215 39 9 1759 1966 374142225 374142432 1.010000e-14 91.6
18 TraesCS2D01G418100 chr7D 95.616 365 15 1 2292 2655 635572985 635572621 3.810000e-163 584.0
19 TraesCS2D01G418100 chr7D 93.197 294 13 2 2292 2585 571877749 571878035 2.440000e-115 425.0
20 TraesCS2D01G418100 chr7D 90.511 137 13 0 473 609 141635809 141635945 5.840000e-42 182.0
21 TraesCS2D01G418100 chr7D 89.630 135 14 0 475 609 106001265 106001131 3.520000e-39 172.0
22 TraesCS2D01G418100 chr7D 88.235 136 16 0 473 608 11122873 11122738 2.120000e-36 163.0
23 TraesCS2D01G418100 chr7D 88.148 135 16 0 475 609 571008780 571008914 7.610000e-36 161.0
24 TraesCS2D01G418100 chr7D 78.037 214 33 9 1759 1966 19657915 19658120 3.590000e-24 122.0
25 TraesCS2D01G418100 chr1B 90.710 366 34 0 2292 2657 596319631 596319266 3.070000e-134 488.0
26 TraesCS2D01G418100 chr1B 89.702 369 37 1 2289 2657 50324781 50325148 1.110000e-128 470.0
27 TraesCS2D01G418100 chr1B 92.929 99 6 1 2099 2196 112301103 112301005 2.760000e-30 143.0
28 TraesCS2D01G418100 chr1B 75.349 215 39 9 1759 1966 681838368 681838575 1.010000e-14 91.6
29 TraesCS2D01G418100 chr6B 87.433 374 41 6 2286 2657 56010265 56009896 2.440000e-115 425.0
30 TraesCS2D01G418100 chr6B 78.972 214 33 8 1759 1966 693822502 693822295 4.610000e-28 135.0
31 TraesCS2D01G418100 chr7A 91.447 304 26 0 2292 2595 59013218 59012915 4.090000e-113 418.0
32 TraesCS2D01G418100 chr7A 76.613 248 41 14 1726 1966 712149578 712149341 1.290000e-23 121.0
33 TraesCS2D01G418100 chr3A 93.600 250 15 1 2337 2585 727546466 727546715 3.230000e-99 372.0
34 TraesCS2D01G418100 chr4A 93.133 233 16 0 2292 2524 659732218 659731986 2.530000e-90 342.0
35 TraesCS2D01G418100 chr4A 76.757 185 29 9 1789 1966 620421387 620421210 1.010000e-14 91.6
36 TraesCS2D01G418100 chr3B 90.580 138 13 0 472 609 177086359 177086496 1.620000e-42 183.0
37 TraesCS2D01G418100 chr6A 90.441 136 13 0 474 609 6922891 6922756 2.100000e-41 180.0
38 TraesCS2D01G418100 chr6A 86.131 137 19 0 473 609 461780245 461780381 5.930000e-32 148.0
39 TraesCS2D01G418100 chr6A 77.992 259 31 19 1727 1966 207796120 207796371 3.570000e-29 139.0
40 TraesCS2D01G418100 chr1D 89.781 137 14 0 473 609 193502756 193502620 2.720000e-40 176.0
41 TraesCS2D01G418100 chr1D 88.148 135 16 0 474 608 427826051 427825917 7.610000e-36 161.0
42 TraesCS2D01G418100 chr1D 90.476 105 8 2 2089 2192 64325899 64326002 1.280000e-28 137.0
43 TraesCS2D01G418100 chr1D 86.290 124 17 0 484 607 311667150 311667273 4.610000e-28 135.0
44 TraesCS2D01G418100 chr1D 86.290 124 17 0 484 607 345944231 345944108 4.610000e-28 135.0
45 TraesCS2D01G418100 chr1D 85.156 128 19 0 479 606 231021199 231021072 5.970000e-27 132.0
46 TraesCS2D01G418100 chr1D 84.677 124 19 0 484 607 263844342 263844465 9.990000e-25 124.0
47 TraesCS2D01G418100 chr1D 92.405 79 5 1 475 552 141265739 141265817 7.770000e-21 111.0
48 TraesCS2D01G418100 chr1D 80.620 129 20 3 479 607 486655153 486655276 7.830000e-16 95.3
49 TraesCS2D01G418100 chr7B 89.394 132 14 0 478 609 645394575 645394444 1.640000e-37 167.0
50 TraesCS2D01G418100 chr7B 77.778 261 31 17 1726 1966 494497554 494497807 4.610000e-28 135.0
51 TraesCS2D01G418100 chr1A 88.489 139 14 1 473 609 97157429 97157291 1.640000e-37 167.0
52 TraesCS2D01G418100 chr1A 87.591 137 16 1 473 609 240308472 240308337 9.850000e-35 158.0
53 TraesCS2D01G418100 chr1A 87.407 135 17 0 474 608 584996944 584997078 3.540000e-34 156.0
54 TraesCS2D01G418100 chr1A 86.331 139 18 1 471 609 554084112 554084249 1.650000e-32 150.0
55 TraesCS2D01G418100 chr1A 96.629 89 3 0 2108 2196 498400930 498400842 5.930000e-32 148.0
56 TraesCS2D01G418100 chr1A 93.000 100 6 1 2096 2194 537892661 537892562 7.670000e-31 145.0
57 TraesCS2D01G418100 chr1A 85.106 141 20 1 469 609 13660599 13660460 2.760000e-30 143.0
58 TraesCS2D01G418100 chr1A 95.294 85 4 0 2108 2192 577481203 577481119 4.610000e-28 135.0
59 TraesCS2D01G418100 chr6D 92.157 102 6 1 2097 2196 78275767 78275868 2.760000e-30 143.0
60 TraesCS2D01G418100 chr6D 85.542 83 11 1 1869 1950 327981388 327981306 4.710000e-13 86.1
61 TraesCS2D01G418100 chr6D 100.000 36 0 0 483 518 17446682 17446647 1.710000e-07 67.6
62 TraesCS2D01G418100 chr4D 92.929 99 6 1 2098 2196 436376810 436376713 2.760000e-30 143.0
63 TraesCS2D01G418100 chr4D 86.290 124 17 0 484 607 407092870 407092993 4.610000e-28 135.0
64 TraesCS2D01G418100 chr4D 86.290 124 17 0 484 607 446013755 446013878 4.610000e-28 135.0
65 TraesCS2D01G418100 chr4D 86.179 123 12 5 2075 2194 105134451 105134571 7.720000e-26 128.0
66 TraesCS2D01G418100 chr5D 80.874 183 23 9 1790 1966 528409872 528410048 1.660000e-27 134.0
67 TraesCS2D01G418100 chrUn 83.636 110 17 1 479 587 42177326 42177217 4.680000e-18 102.0
68 TraesCS2D01G418100 chrUn 97.143 35 1 0 483 517 95391243 95391277 2.860000e-05 60.2
69 TraesCS2D01G418100 chr3D 75.000 240 48 11 1731 1966 1591393 1591162 1.680000e-17 100.0
70 TraesCS2D01G418100 chr5B 77.297 185 28 9 1789 1966 519789438 519789615 2.180000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G418100 chr2D 532172587 532175243 2656 False 4907.0 4907 100.0000 1 2657 1 chr2D.!!$F1 2656
1 TraesCS2D01G418100 chr2B 632041257 632043209 1952 False 2918.0 2918 94.1210 1 1898 1 chr2B.!!$F3 1897
2 TraesCS2D01G418100 chr2A 676478469 676480210 1741 False 1156.5 1666 92.0445 1 2077 2 chr2A.!!$F6 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 935 1.444895 CAGCGAATGTTTGCCAGCC 60.445 57.895 1.42 0.0 38.37 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 2484 0.030638 GGCAAAGCGAGCAGTTTTCA 59.969 50.0 0.0 0.0 30.63 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
443 465 9.105844 ACCTAGATGCAGTTCATTTACCTATAT 57.894 33.333 0.00 0.00 35.05 0.86
684 714 7.752695 ACAGAAATTTTATCTGGATGACGTTC 58.247 34.615 9.79 0.00 46.81 3.95
774 804 6.128172 CCTTCAGAGAGCGACATAACATTTTT 60.128 38.462 0.00 0.00 0.00 1.94
775 805 6.408858 TCAGAGAGCGACATAACATTTTTC 57.591 37.500 0.00 0.00 0.00 2.29
861 891 3.705579 CCCTCCACAATAAAATGCCATCA 59.294 43.478 0.00 0.00 0.00 3.07
905 935 1.444895 CAGCGAATGTTTGCCAGCC 60.445 57.895 1.42 0.00 38.37 4.85
1167 1197 1.428448 CGTCCAACATCTTGCTCGAA 58.572 50.000 0.00 0.00 0.00 3.71
1514 1568 0.318445 CGGGTCGACGACTTCAACTT 60.318 55.000 25.87 0.00 35.47 2.66
1551 1605 1.068434 CTTCTTCTCATCGCCCTCTCC 59.932 57.143 0.00 0.00 0.00 3.71
1601 1655 3.761218 CTGACTATCTATGAGGTCCGCAT 59.239 47.826 13.08 13.08 0.00 4.73
1611 1665 3.234353 TGAGGTCCGCATGATCTTATCT 58.766 45.455 0.00 0.00 33.39 1.98
1683 1737 3.652869 TCATTCATACTCCCTCCATTCCC 59.347 47.826 0.00 0.00 0.00 3.97
1692 1746 0.967380 CCTCCATTCCCAACACAGCC 60.967 60.000 0.00 0.00 0.00 4.85
1693 1747 0.967380 CTCCATTCCCAACACAGCCC 60.967 60.000 0.00 0.00 0.00 5.19
1745 1799 4.581409 GGTTCTAAGGCTGTTGTTTGGTTA 59.419 41.667 0.00 0.00 0.00 2.85
1780 1855 6.454795 TCTGAAAAAGCTGTTGTGAACTTTT 58.545 32.000 0.00 0.00 42.50 2.27
1786 1861 3.066760 AGCTGTTGTGAACTTTTAGGTGC 59.933 43.478 0.00 0.00 0.00 5.01
1841 1916 9.113838 CAAACTATGATACTAGATTTGGCTGTT 57.886 33.333 0.00 0.00 0.00 3.16
1842 1917 8.668510 AACTATGATACTAGATTTGGCTGTTG 57.331 34.615 0.00 0.00 0.00 3.33
1962 2037 9.947669 CAACCATTTTGCAAGAAAAATTATGAA 57.052 25.926 0.00 0.00 37.59 2.57
1978 2053 7.883229 AATTATGAAAATTTTGACCGACCAC 57.117 32.000 8.47 0.00 0.00 4.16
1982 2057 6.067263 TGAAAATTTTGACCGACCACTTAG 57.933 37.500 8.47 0.00 0.00 2.18
1992 2067 2.564062 CCGACCACTTAGTCCCTGTTTA 59.436 50.000 0.00 0.00 32.91 2.01
2000 2075 7.783119 ACCACTTAGTCCCTGTTTAAAGAAAAT 59.217 33.333 0.00 0.00 0.00 1.82
2037 2112 4.708909 TGCCAGTCCATTTGCAAATATACA 59.291 37.500 23.69 12.28 0.00 2.29
2077 2152 7.996551 CAGTAGAATTTTACGCATACACATACG 59.003 37.037 0.83 0.00 0.00 3.06
2078 2153 6.897259 AGAATTTTACGCATACACATACGT 57.103 33.333 0.00 0.00 37.83 3.57
2079 2154 7.990541 AGAATTTTACGCATACACATACGTA 57.009 32.000 0.00 0.00 35.73 3.57
2080 2155 7.834529 AGAATTTTACGCATACACATACGTAC 58.165 34.615 0.00 0.00 36.40 3.67
2081 2156 7.703621 AGAATTTTACGCATACACATACGTACT 59.296 33.333 0.00 0.00 36.40 2.73
2082 2157 6.557593 TTTTACGCATACACATACGTACTG 57.442 37.500 0.00 0.00 36.40 2.74
2083 2158 3.074504 ACGCATACACATACGTACTGG 57.925 47.619 0.00 0.00 32.35 4.00
2084 2159 1.784856 CGCATACACATACGTACTGGC 59.215 52.381 0.00 0.00 0.00 4.85
2085 2160 2.796735 CGCATACACATACGTACTGGCA 60.797 50.000 0.00 0.00 0.00 4.92
2086 2161 3.390135 GCATACACATACGTACTGGCAT 58.610 45.455 0.00 0.00 0.00 4.40
2087 2162 4.552355 GCATACACATACGTACTGGCATA 58.448 43.478 0.00 0.00 0.00 3.14
2088 2163 5.168569 GCATACACATACGTACTGGCATAT 58.831 41.667 0.00 0.00 0.00 1.78
2089 2164 5.288712 GCATACACATACGTACTGGCATATC 59.711 44.000 0.00 0.00 0.00 1.63
2090 2165 6.621613 CATACACATACGTACTGGCATATCT 58.378 40.000 0.00 0.00 0.00 1.98
2091 2166 5.122512 ACACATACGTACTGGCATATCTC 57.877 43.478 0.00 0.00 0.00 2.75
2092 2167 4.827835 ACACATACGTACTGGCATATCTCT 59.172 41.667 0.00 0.00 0.00 3.10
2093 2168 5.157067 CACATACGTACTGGCATATCTCTG 58.843 45.833 0.00 0.00 0.00 3.35
2094 2169 5.048713 CACATACGTACTGGCATATCTCTGA 60.049 44.000 0.00 0.00 0.00 3.27
2095 2170 5.535030 ACATACGTACTGGCATATCTCTGAA 59.465 40.000 0.00 0.00 0.00 3.02
2096 2171 6.040504 ACATACGTACTGGCATATCTCTGAAA 59.959 38.462 0.00 0.00 0.00 2.69
2097 2172 5.537300 ACGTACTGGCATATCTCTGAAAT 57.463 39.130 0.00 0.00 0.00 2.17
2098 2173 5.918608 ACGTACTGGCATATCTCTGAAATT 58.081 37.500 0.00 0.00 0.00 1.82
2099 2174 6.349300 ACGTACTGGCATATCTCTGAAATTT 58.651 36.000 0.00 0.00 0.00 1.82
2100 2175 7.497595 ACGTACTGGCATATCTCTGAAATTTA 58.502 34.615 0.00 0.00 0.00 1.40
2101 2176 8.150945 ACGTACTGGCATATCTCTGAAATTTAT 58.849 33.333 0.00 0.00 0.00 1.40
2102 2177 9.639601 CGTACTGGCATATCTCTGAAATTTATA 57.360 33.333 0.00 0.00 0.00 0.98
2117 2192 9.587772 CTGAAATTTATACATATACTCCCTCCG 57.412 37.037 0.00 0.00 0.00 4.63
2118 2193 9.096823 TGAAATTTATACATATACTCCCTCCGT 57.903 33.333 0.00 0.00 0.00 4.69
2123 2198 9.592196 TTTATACATATACTCCCTCCGTAAACT 57.408 33.333 0.00 0.00 0.00 2.66
2126 2201 9.765295 ATACATATACTCCCTCCGTAAACTAAT 57.235 33.333 0.00 0.00 0.00 1.73
2128 2203 9.765295 ACATATACTCCCTCCGTAAACTAATAT 57.235 33.333 0.00 0.00 0.00 1.28
2133 2208 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2134 2209 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
2135 2210 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
2136 2211 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
2137 2212 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
2138 2213 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
2155 2230 8.994429 AGAGTGTTTAGATCACTACTTTGATG 57.006 34.615 0.00 0.00 44.68 3.07
2156 2231 8.807118 AGAGTGTTTAGATCACTACTTTGATGA 58.193 33.333 0.00 0.00 44.68 2.92
2157 2232 9.593134 GAGTGTTTAGATCACTACTTTGATGAT 57.407 33.333 0.00 0.00 44.68 2.45
2158 2233 9.950496 AGTGTTTAGATCACTACTTTGATGATT 57.050 29.630 0.00 0.00 43.17 2.57
2168 2243 9.778741 TCACTACTTTGATGATTTAAACACTCT 57.221 29.630 0.00 0.00 0.00 3.24
2188 2263 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
2190 2265 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
2196 2271 6.540438 TTAGTTTACAGAGGGAGTACATGG 57.460 41.667 0.00 0.00 0.00 3.66
2197 2272 3.197983 AGTTTACAGAGGGAGTACATGGC 59.802 47.826 0.00 0.00 0.00 4.40
2198 2273 2.543037 TACAGAGGGAGTACATGGCA 57.457 50.000 0.00 0.00 0.00 4.92
2199 2274 1.198713 ACAGAGGGAGTACATGGCAG 58.801 55.000 0.00 0.00 0.00 4.85
2200 2275 1.198713 CAGAGGGAGTACATGGCAGT 58.801 55.000 0.00 0.00 0.00 4.40
2201 2276 1.134580 CAGAGGGAGTACATGGCAGTG 60.135 57.143 0.00 0.00 0.00 3.66
2202 2277 0.462759 GAGGGAGTACATGGCAGTGC 60.463 60.000 6.55 6.55 0.00 4.40
2203 2278 0.911525 AGGGAGTACATGGCAGTGCT 60.912 55.000 16.11 7.23 37.15 4.40
2204 2279 0.462759 GGGAGTACATGGCAGTGCTC 60.463 60.000 16.11 19.17 46.44 4.26
2205 2280 0.539051 GGAGTACATGGCAGTGCTCT 59.461 55.000 23.19 0.00 46.39 4.09
2206 2281 1.757118 GGAGTACATGGCAGTGCTCTA 59.243 52.381 23.19 2.26 46.39 2.43
2207 2282 2.366916 GGAGTACATGGCAGTGCTCTAT 59.633 50.000 23.19 4.70 46.39 1.98
2208 2283 3.553922 GGAGTACATGGCAGTGCTCTATC 60.554 52.174 23.19 4.58 46.39 2.08
2209 2284 3.303938 AGTACATGGCAGTGCTCTATCT 58.696 45.455 16.11 4.44 27.57 1.98
2210 2285 2.906691 ACATGGCAGTGCTCTATCTC 57.093 50.000 16.11 0.00 0.00 2.75
2211 2286 2.396608 ACATGGCAGTGCTCTATCTCT 58.603 47.619 16.11 0.00 0.00 3.10
2212 2287 2.102757 ACATGGCAGTGCTCTATCTCTG 59.897 50.000 16.11 4.04 0.00 3.35
2213 2288 2.149973 TGGCAGTGCTCTATCTCTGA 57.850 50.000 16.11 0.00 31.28 3.27
2214 2289 2.460669 TGGCAGTGCTCTATCTCTGAA 58.539 47.619 16.11 0.00 31.28 3.02
2215 2290 2.833943 TGGCAGTGCTCTATCTCTGAAA 59.166 45.455 16.11 0.00 31.28 2.69
2216 2291 3.261643 TGGCAGTGCTCTATCTCTGAAAA 59.738 43.478 16.11 0.00 31.28 2.29
2217 2292 4.080695 TGGCAGTGCTCTATCTCTGAAAAT 60.081 41.667 16.11 0.00 31.28 1.82
2218 2293 5.129320 TGGCAGTGCTCTATCTCTGAAAATA 59.871 40.000 16.11 0.00 31.28 1.40
2219 2294 5.465056 GGCAGTGCTCTATCTCTGAAAATAC 59.535 44.000 16.11 0.00 31.28 1.89
2220 2295 5.174761 GCAGTGCTCTATCTCTGAAAATACG 59.825 44.000 8.18 0.00 31.28 3.06
2221 2296 5.689514 CAGTGCTCTATCTCTGAAAATACGG 59.310 44.000 0.00 0.00 31.28 4.02
2222 2297 5.594725 AGTGCTCTATCTCTGAAAATACGGA 59.405 40.000 0.00 0.00 0.00 4.69
2223 2298 5.918011 GTGCTCTATCTCTGAAAATACGGAG 59.082 44.000 0.00 0.00 42.63 4.63
2240 2315 4.783055 ACGGAGTACAGTCATAGATCTGT 58.217 43.478 5.18 0.00 41.94 3.41
2241 2316 5.926663 ACGGAGTACAGTCATAGATCTGTA 58.073 41.667 5.18 0.00 41.94 2.74
2251 2326 9.854668 ACAGTCATAGATCTGTACTATACTTGT 57.145 33.333 5.18 0.00 42.13 3.16
2261 2336 9.854668 ATCTGTACTATACTTGTATCTGACTGT 57.145 33.333 0.00 0.00 0.00 3.55
2283 2358 7.089770 TGTACTAAACAGTGCTCTATCTCTG 57.910 40.000 0.00 0.00 33.01 3.35
2284 2359 6.884836 TGTACTAAACAGTGCTCTATCTCTGA 59.115 38.462 0.00 0.00 33.01 3.27
2285 2360 6.842437 ACTAAACAGTGCTCTATCTCTGAA 57.158 37.500 0.00 0.00 33.28 3.02
2286 2361 7.233389 ACTAAACAGTGCTCTATCTCTGAAA 57.767 36.000 0.00 0.00 33.28 2.69
2287 2362 7.846066 ACTAAACAGTGCTCTATCTCTGAAAT 58.154 34.615 0.00 0.00 33.28 2.17
2288 2363 8.317679 ACTAAACAGTGCTCTATCTCTGAAATT 58.682 33.333 0.00 0.00 33.28 1.82
2289 2364 9.809096 CTAAACAGTGCTCTATCTCTGAAATTA 57.191 33.333 0.00 0.00 33.28 1.40
2290 2365 8.715191 AAACAGTGCTCTATCTCTGAAATTAG 57.285 34.615 0.00 0.00 33.28 1.73
2291 2366 6.815089 ACAGTGCTCTATCTCTGAAATTAGG 58.185 40.000 0.00 0.00 33.28 2.69
2292 2367 6.609212 ACAGTGCTCTATCTCTGAAATTAGGA 59.391 38.462 0.00 0.00 33.28 2.94
2293 2368 7.147312 CAGTGCTCTATCTCTGAAATTAGGAG 58.853 42.308 0.00 0.00 31.28 3.69
2294 2369 6.838612 AGTGCTCTATCTCTGAAATTAGGAGT 59.161 38.462 0.00 0.00 0.00 3.85
2295 2370 8.001875 AGTGCTCTATCTCTGAAATTAGGAGTA 58.998 37.037 0.00 0.00 0.00 2.59
2296 2371 8.802267 GTGCTCTATCTCTGAAATTAGGAGTAT 58.198 37.037 0.00 0.00 0.00 2.12
2297 2372 9.373450 TGCTCTATCTCTGAAATTAGGAGTATT 57.627 33.333 0.00 0.00 0.00 1.89
2314 2389 8.400184 AGGAGTATTTAACCAAAAACTACCAC 57.600 34.615 0.00 0.00 0.00 4.16
2315 2390 8.000127 AGGAGTATTTAACCAAAAACTACCACA 59.000 33.333 0.00 0.00 0.00 4.17
2316 2391 8.631797 GGAGTATTTAACCAAAAACTACCACAA 58.368 33.333 0.00 0.00 0.00 3.33
2322 2397 8.879342 TTAACCAAAAACTACCACAATTCATG 57.121 30.769 0.00 0.00 0.00 3.07
2323 2398 5.852827 ACCAAAAACTACCACAATTCATGG 58.147 37.500 4.03 4.03 43.43 3.66
2324 2399 5.600484 ACCAAAAACTACCACAATTCATGGA 59.400 36.000 11.51 0.00 39.87 3.41
2325 2400 6.098982 ACCAAAAACTACCACAATTCATGGAA 59.901 34.615 11.51 0.00 39.87 3.53
2326 2401 6.989169 CCAAAAACTACCACAATTCATGGAAA 59.011 34.615 11.51 0.26 39.87 3.13
2327 2402 7.661027 CCAAAAACTACCACAATTCATGGAAAT 59.339 33.333 11.51 0.00 39.87 2.17
2328 2403 9.703892 CAAAAACTACCACAATTCATGGAAATA 57.296 29.630 11.51 0.00 39.87 1.40
2330 2405 9.874205 AAAACTACCACAATTCATGGAAATATG 57.126 29.630 11.51 0.00 39.87 1.78
2331 2406 8.593945 AACTACCACAATTCATGGAAATATGT 57.406 30.769 11.51 0.00 39.87 2.29
2332 2407 8.225603 ACTACCACAATTCATGGAAATATGTC 57.774 34.615 11.51 0.00 39.87 3.06
2333 2408 6.135290 ACCACAATTCATGGAAATATGTCG 57.865 37.500 11.51 0.00 39.87 4.35
2334 2409 5.885352 ACCACAATTCATGGAAATATGTCGA 59.115 36.000 11.51 0.00 39.87 4.20
2335 2410 6.038603 ACCACAATTCATGGAAATATGTCGAG 59.961 38.462 11.51 0.00 39.87 4.04
2336 2411 6.260714 CCACAATTCATGGAAATATGTCGAGA 59.739 38.462 0.00 0.00 39.87 4.04
2337 2412 7.201723 CCACAATTCATGGAAATATGTCGAGAA 60.202 37.037 0.00 0.00 39.87 2.87
2338 2413 8.183536 CACAATTCATGGAAATATGTCGAGAAA 58.816 33.333 0.00 0.00 0.00 2.52
2339 2414 8.184192 ACAATTCATGGAAATATGTCGAGAAAC 58.816 33.333 0.00 0.00 0.00 2.78
2340 2415 8.400947 CAATTCATGGAAATATGTCGAGAAACT 58.599 33.333 0.00 0.00 0.00 2.66
2341 2416 9.613428 AATTCATGGAAATATGTCGAGAAACTA 57.387 29.630 0.00 0.00 0.00 2.24
2342 2417 8.420374 TTCATGGAAATATGTCGAGAAACTAC 57.580 34.615 0.00 0.00 0.00 2.73
2343 2418 7.552459 TCATGGAAATATGTCGAGAAACTACA 58.448 34.615 0.00 0.00 0.00 2.74
2344 2419 8.038351 TCATGGAAATATGTCGAGAAACTACAA 58.962 33.333 0.00 0.00 0.00 2.41
2345 2420 7.591006 TGGAAATATGTCGAGAAACTACAAC 57.409 36.000 0.00 0.00 0.00 3.32
2346 2421 7.383687 TGGAAATATGTCGAGAAACTACAACT 58.616 34.615 0.00 0.00 0.00 3.16
2347 2422 7.876068 TGGAAATATGTCGAGAAACTACAACTT 59.124 33.333 0.00 0.00 0.00 2.66
2348 2423 8.718734 GGAAATATGTCGAGAAACTACAACTTT 58.281 33.333 0.00 0.00 0.00 2.66
2351 2426 6.686130 ATGTCGAGAAACTACAACTTTACG 57.314 37.500 0.00 0.00 0.00 3.18
2352 2427 5.820131 TGTCGAGAAACTACAACTTTACGA 58.180 37.500 0.00 0.00 0.00 3.43
2353 2428 6.441274 TGTCGAGAAACTACAACTTTACGAT 58.559 36.000 0.00 0.00 0.00 3.73
2354 2429 6.919662 TGTCGAGAAACTACAACTTTACGATT 59.080 34.615 0.00 0.00 0.00 3.34
2355 2430 7.436080 TGTCGAGAAACTACAACTTTACGATTT 59.564 33.333 0.00 0.00 0.00 2.17
2356 2431 8.271487 GTCGAGAAACTACAACTTTACGATTTT 58.729 33.333 0.00 0.00 0.00 1.82
2357 2432 8.270799 TCGAGAAACTACAACTTTACGATTTTG 58.729 33.333 0.00 0.00 0.00 2.44
2358 2433 8.060090 CGAGAAACTACAACTTTACGATTTTGT 58.940 33.333 0.00 0.00 36.23 2.83
2359 2434 9.155053 GAGAAACTACAACTTTACGATTTTGTG 57.845 33.333 0.00 0.00 34.15 3.33
2360 2435 7.642586 AGAAACTACAACTTTACGATTTTGTGC 59.357 33.333 0.00 0.00 34.15 4.57
2361 2436 5.754778 ACTACAACTTTACGATTTTGTGCC 58.245 37.500 0.00 0.00 34.15 5.01
2362 2437 4.640789 ACAACTTTACGATTTTGTGCCA 57.359 36.364 0.00 0.00 30.99 4.92
2363 2438 5.000012 ACAACTTTACGATTTTGTGCCAA 58.000 34.783 0.00 0.00 30.99 4.52
2364 2439 5.411781 ACAACTTTACGATTTTGTGCCAAA 58.588 33.333 0.00 0.00 30.99 3.28
2365 2440 5.869888 ACAACTTTACGATTTTGTGCCAAAA 59.130 32.000 13.22 13.22 30.99 2.44
2366 2441 6.369065 ACAACTTTACGATTTTGTGCCAAAAA 59.631 30.769 14.37 6.63 30.99 1.94
2367 2442 6.339194 ACTTTACGATTTTGTGCCAAAAAC 57.661 33.333 14.37 11.66 32.12 2.43
2368 2443 6.103330 ACTTTACGATTTTGTGCCAAAAACT 58.897 32.000 14.37 2.87 32.12 2.66
2369 2444 7.259161 ACTTTACGATTTTGTGCCAAAAACTA 58.741 30.769 14.37 6.52 32.12 2.24
2370 2445 7.221259 ACTTTACGATTTTGTGCCAAAAACTAC 59.779 33.333 14.37 7.90 32.12 2.73
2371 2446 4.364860 ACGATTTTGTGCCAAAAACTACC 58.635 39.130 14.37 4.70 32.12 3.18
2372 2447 4.142138 ACGATTTTGTGCCAAAAACTACCA 60.142 37.500 14.37 0.00 32.12 3.25
2373 2448 4.208253 CGATTTTGTGCCAAAAACTACCAC 59.792 41.667 14.37 0.00 32.12 4.16
2374 2449 4.810191 TTTTGTGCCAAAAACTACCACT 57.190 36.364 9.70 0.00 0.00 4.00
2375 2450 4.810191 TTTGTGCCAAAAACTACCACTT 57.190 36.364 0.00 0.00 0.00 3.16
2376 2451 4.810191 TTGTGCCAAAAACTACCACTTT 57.190 36.364 0.00 0.00 0.00 2.66
2377 2452 4.810191 TGTGCCAAAAACTACCACTTTT 57.190 36.364 0.00 0.00 0.00 2.27
2378 2453 4.499183 TGTGCCAAAAACTACCACTTTTG 58.501 39.130 0.00 0.00 40.59 2.44
2379 2454 4.021016 TGTGCCAAAAACTACCACTTTTGT 60.021 37.500 6.54 0.00 39.71 2.83
2380 2455 4.565166 GTGCCAAAAACTACCACTTTTGTC 59.435 41.667 6.54 0.00 39.71 3.18
2381 2456 4.116961 GCCAAAAACTACCACTTTTGTCC 58.883 43.478 6.54 0.00 39.71 4.02
2382 2457 4.142026 GCCAAAAACTACCACTTTTGTCCT 60.142 41.667 6.54 0.00 39.71 3.85
2383 2458 5.068067 GCCAAAAACTACCACTTTTGTCCTA 59.932 40.000 6.54 0.00 39.71 2.94
2384 2459 6.406065 GCCAAAAACTACCACTTTTGTCCTAA 60.406 38.462 6.54 0.00 39.71 2.69
2385 2460 7.685884 GCCAAAAACTACCACTTTTGTCCTAAT 60.686 37.037 6.54 0.00 39.71 1.73
2386 2461 7.865889 CCAAAAACTACCACTTTTGTCCTAATC 59.134 37.037 6.54 0.00 39.71 1.75
2387 2462 8.630037 CAAAAACTACCACTTTTGTCCTAATCT 58.370 33.333 0.00 0.00 37.61 2.40
2388 2463 7.745620 AAACTACCACTTTTGTCCTAATCTG 57.254 36.000 0.00 0.00 0.00 2.90
2389 2464 6.435292 ACTACCACTTTTGTCCTAATCTGT 57.565 37.500 0.00 0.00 0.00 3.41
2390 2465 6.838382 ACTACCACTTTTGTCCTAATCTGTT 58.162 36.000 0.00 0.00 0.00 3.16
2391 2466 6.710744 ACTACCACTTTTGTCCTAATCTGTTG 59.289 38.462 0.00 0.00 0.00 3.33
2392 2467 4.278419 ACCACTTTTGTCCTAATCTGTTGC 59.722 41.667 0.00 0.00 0.00 4.17
2393 2468 4.520492 CCACTTTTGTCCTAATCTGTTGCT 59.480 41.667 0.00 0.00 0.00 3.91
2394 2469 5.705441 CCACTTTTGTCCTAATCTGTTGCTA 59.295 40.000 0.00 0.00 0.00 3.49
2395 2470 6.206634 CCACTTTTGTCCTAATCTGTTGCTAA 59.793 38.462 0.00 0.00 0.00 3.09
2396 2471 7.255451 CCACTTTTGTCCTAATCTGTTGCTAAA 60.255 37.037 0.00 0.00 0.00 1.85
2397 2472 8.134895 CACTTTTGTCCTAATCTGTTGCTAAAA 58.865 33.333 0.00 0.00 0.00 1.52
2398 2473 8.691797 ACTTTTGTCCTAATCTGTTGCTAAAAA 58.308 29.630 0.00 0.00 0.00 1.94
2399 2474 8.865590 TTTTGTCCTAATCTGTTGCTAAAAAC 57.134 30.769 0.00 0.00 0.00 2.43
2400 2475 7.817418 TTGTCCTAATCTGTTGCTAAAAACT 57.183 32.000 0.00 0.00 0.00 2.66
2401 2476 8.911918 TTGTCCTAATCTGTTGCTAAAAACTA 57.088 30.769 0.00 0.00 0.00 2.24
2402 2477 8.319143 TGTCCTAATCTGTTGCTAAAAACTAC 57.681 34.615 0.00 0.00 0.00 2.73
2403 2478 7.389607 TGTCCTAATCTGTTGCTAAAAACTACC 59.610 37.037 0.00 0.00 0.00 3.18
2404 2479 7.389607 GTCCTAATCTGTTGCTAAAAACTACCA 59.610 37.037 0.00 0.00 0.00 3.25
2405 2480 7.940137 TCCTAATCTGTTGCTAAAAACTACCAA 59.060 33.333 0.00 0.00 0.00 3.67
2406 2481 8.237267 CCTAATCTGTTGCTAAAAACTACCAAG 58.763 37.037 0.00 0.00 0.00 3.61
2407 2482 7.582667 AATCTGTTGCTAAAAACTACCAAGT 57.417 32.000 0.00 0.00 37.65 3.16
2408 2483 6.371809 TCTGTTGCTAAAAACTACCAAGTG 57.628 37.500 0.00 0.00 35.62 3.16
2409 2484 5.883673 TCTGTTGCTAAAAACTACCAAGTGT 59.116 36.000 0.00 0.00 35.62 3.55
2410 2485 5.885881 TGTTGCTAAAAACTACCAAGTGTG 58.114 37.500 0.00 0.00 35.62 3.82
2411 2486 5.648526 TGTTGCTAAAAACTACCAAGTGTGA 59.351 36.000 0.00 0.00 35.62 3.58
2412 2487 6.151312 TGTTGCTAAAAACTACCAAGTGTGAA 59.849 34.615 0.00 0.00 35.62 3.18
2413 2488 6.761099 TGCTAAAAACTACCAAGTGTGAAA 57.239 33.333 0.00 0.00 35.62 2.69
2414 2489 7.159322 TGCTAAAAACTACCAAGTGTGAAAA 57.841 32.000 0.00 0.00 35.62 2.29
2415 2490 7.030768 TGCTAAAAACTACCAAGTGTGAAAAC 58.969 34.615 0.00 0.00 35.62 2.43
2416 2491 7.094118 TGCTAAAAACTACCAAGTGTGAAAACT 60.094 33.333 0.00 0.00 35.62 2.66
2417 2492 7.220108 GCTAAAAACTACCAAGTGTGAAAACTG 59.780 37.037 0.00 0.00 35.62 3.16
2418 2493 4.632538 AACTACCAAGTGTGAAAACTGC 57.367 40.909 0.00 0.00 35.62 4.40
2419 2494 3.886123 ACTACCAAGTGTGAAAACTGCT 58.114 40.909 0.00 0.00 33.57 4.24
2420 2495 3.877508 ACTACCAAGTGTGAAAACTGCTC 59.122 43.478 0.00 0.00 33.57 4.26
2421 2496 1.670811 ACCAAGTGTGAAAACTGCTCG 59.329 47.619 0.00 0.00 0.00 5.03
2422 2497 1.597937 CCAAGTGTGAAAACTGCTCGC 60.598 52.381 0.00 0.00 0.00 5.03
2423 2498 1.331756 CAAGTGTGAAAACTGCTCGCT 59.668 47.619 0.00 0.00 0.00 4.93
2424 2499 1.668419 AGTGTGAAAACTGCTCGCTT 58.332 45.000 0.00 0.00 0.00 4.68
2425 2500 2.017049 AGTGTGAAAACTGCTCGCTTT 58.983 42.857 0.00 0.00 0.00 3.51
2426 2501 2.111756 GTGTGAAAACTGCTCGCTTTG 58.888 47.619 0.00 0.00 0.00 2.77
2427 2502 1.123655 GTGAAAACTGCTCGCTTTGC 58.876 50.000 0.00 0.00 0.00 3.68
2428 2503 0.030638 TGAAAACTGCTCGCTTTGCC 59.969 50.000 0.00 0.00 0.00 4.52
2429 2504 0.312102 GAAAACTGCTCGCTTTGCCT 59.688 50.000 0.00 0.00 0.00 4.75
2430 2505 0.031178 AAAACTGCTCGCTTTGCCTG 59.969 50.000 0.00 0.00 0.00 4.85
2431 2506 1.799258 AAACTGCTCGCTTTGCCTGG 61.799 55.000 0.00 0.00 0.00 4.45
2432 2507 3.437795 CTGCTCGCTTTGCCTGGG 61.438 66.667 0.00 0.00 0.00 4.45
2435 2510 2.268920 CTCGCTTTGCCTGGGCTA 59.731 61.111 13.05 2.16 42.51 3.93
2436 2511 1.377202 CTCGCTTTGCCTGGGCTAA 60.377 57.895 13.05 10.39 42.51 3.09
2437 2512 0.960364 CTCGCTTTGCCTGGGCTAAA 60.960 55.000 13.05 10.15 42.51 1.85
2438 2513 1.212751 CGCTTTGCCTGGGCTAAAC 59.787 57.895 13.05 6.20 42.51 2.01
2439 2514 1.591703 GCTTTGCCTGGGCTAAACC 59.408 57.895 13.05 2.51 42.51 3.27
2450 2525 2.693267 GGCTAAACCCGAATCTGACT 57.307 50.000 0.00 0.00 0.00 3.41
2451 2526 2.280628 GGCTAAACCCGAATCTGACTG 58.719 52.381 0.00 0.00 0.00 3.51
2452 2527 1.666189 GCTAAACCCGAATCTGACTGC 59.334 52.381 0.00 0.00 0.00 4.40
2453 2528 2.280628 CTAAACCCGAATCTGACTGCC 58.719 52.381 0.00 0.00 0.00 4.85
2454 2529 0.322546 AAACCCGAATCTGACTGCCC 60.323 55.000 0.00 0.00 0.00 5.36
2455 2530 2.202932 CCCGAATCTGACTGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
2456 2531 2.721167 CCCGAATCTGACTGCCCGA 61.721 63.158 0.00 0.00 0.00 5.14
2457 2532 1.519455 CCGAATCTGACTGCCCGAC 60.519 63.158 0.00 0.00 0.00 4.79
2458 2533 1.519455 CGAATCTGACTGCCCGACC 60.519 63.158 0.00 0.00 0.00 4.79
2459 2534 1.153349 GAATCTGACTGCCCGACCC 60.153 63.158 0.00 0.00 0.00 4.46
2460 2535 2.595009 GAATCTGACTGCCCGACCCC 62.595 65.000 0.00 0.00 0.00 4.95
2461 2536 3.924013 ATCTGACTGCCCGACCCCA 62.924 63.158 0.00 0.00 0.00 4.96
2462 2537 4.394712 CTGACTGCCCGACCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
2463 2538 4.954118 TGACTGCCCGACCCCACT 62.954 66.667 0.00 0.00 0.00 4.00
2464 2539 4.394712 GACTGCCCGACCCCACTG 62.395 72.222 0.00 0.00 0.00 3.66
2466 2541 3.953775 CTGCCCGACCCCACTGTT 61.954 66.667 0.00 0.00 0.00 3.16
2467 2542 3.491598 CTGCCCGACCCCACTGTTT 62.492 63.158 0.00 0.00 0.00 2.83
2468 2543 2.119484 CTGCCCGACCCCACTGTTTA 62.119 60.000 0.00 0.00 0.00 2.01
2469 2544 1.073548 GCCCGACCCCACTGTTTAA 59.926 57.895 0.00 0.00 0.00 1.52
2470 2545 0.958876 GCCCGACCCCACTGTTTAAG 60.959 60.000 0.00 0.00 0.00 1.85
2471 2546 0.399075 CCCGACCCCACTGTTTAAGT 59.601 55.000 0.00 0.00 40.93 2.24
2479 2554 3.396951 ACTGTTTAAGTGCCAGCGT 57.603 47.368 0.00 0.00 37.88 5.07
2480 2555 0.944386 ACTGTTTAAGTGCCAGCGTG 59.056 50.000 0.00 0.00 37.88 5.34
2481 2556 0.238289 CTGTTTAAGTGCCAGCGTGG 59.762 55.000 0.25 0.25 41.55 4.94
2499 2574 3.570638 CGAAGCGCTCATGGCCAG 61.571 66.667 12.06 3.43 37.74 4.85
2500 2575 3.885521 GAAGCGCTCATGGCCAGC 61.886 66.667 12.06 8.98 37.74 4.85
2505 2580 2.124736 GCTCATGGCCAGCCGTTA 60.125 61.111 13.05 0.00 39.42 3.18
2506 2581 1.748879 GCTCATGGCCAGCCGTTAA 60.749 57.895 13.05 0.00 39.42 2.01
2507 2582 1.993369 GCTCATGGCCAGCCGTTAAC 61.993 60.000 13.05 0.00 39.42 2.01
2508 2583 1.705337 CTCATGGCCAGCCGTTAACG 61.705 60.000 20.99 20.99 39.42 3.18
2509 2584 3.131478 ATGGCCAGCCGTTAACGC 61.131 61.111 22.43 16.84 39.42 4.84
2514 2589 3.784412 CAGCCGTTAACGCCCGTG 61.784 66.667 22.43 11.72 38.18 4.94
2515 2590 3.993584 AGCCGTTAACGCCCGTGA 61.994 61.111 22.43 0.00 38.18 4.35
2516 2591 3.781162 GCCGTTAACGCCCGTGAC 61.781 66.667 22.43 1.72 38.18 3.67
2517 2592 3.113979 CCGTTAACGCCCGTGACC 61.114 66.667 22.43 0.00 38.18 4.02
2518 2593 2.356075 CGTTAACGCCCGTGACCA 60.356 61.111 16.05 0.00 0.00 4.02
2519 2594 1.738830 CGTTAACGCCCGTGACCAT 60.739 57.895 16.05 0.00 0.00 3.55
2520 2595 1.689352 CGTTAACGCCCGTGACCATC 61.689 60.000 16.05 0.00 0.00 3.51
2521 2596 0.390735 GTTAACGCCCGTGACCATCT 60.391 55.000 0.00 0.00 0.00 2.90
2522 2597 0.390603 TTAACGCCCGTGACCATCTG 60.391 55.000 0.00 0.00 0.00 2.90
2523 2598 1.537814 TAACGCCCGTGACCATCTGT 61.538 55.000 0.00 0.00 0.00 3.41
2524 2599 2.509336 CGCCCGTGACCATCTGTC 60.509 66.667 0.00 0.00 44.72 3.51
2525 2600 2.125106 GCCCGTGACCATCTGTCC 60.125 66.667 0.00 0.00 43.78 4.02
2526 2601 2.660064 GCCCGTGACCATCTGTCCT 61.660 63.158 0.00 0.00 43.78 3.85
2527 2602 1.517832 CCCGTGACCATCTGTCCTC 59.482 63.158 0.00 0.00 43.78 3.71
2528 2603 1.139734 CCGTGACCATCTGTCCTCG 59.860 63.158 0.00 0.00 43.78 4.63
2529 2604 1.595993 CCGTGACCATCTGTCCTCGT 61.596 60.000 0.00 0.00 43.78 4.18
2530 2605 1.092348 CGTGACCATCTGTCCTCGTA 58.908 55.000 0.00 0.00 43.78 3.43
2531 2606 1.064208 CGTGACCATCTGTCCTCGTAG 59.936 57.143 0.00 0.00 43.78 3.51
2532 2607 1.103803 TGACCATCTGTCCTCGTAGC 58.896 55.000 0.00 0.00 43.78 3.58
2533 2608 0.386113 GACCATCTGTCCTCGTAGCC 59.614 60.000 0.00 0.00 38.09 3.93
2534 2609 0.324368 ACCATCTGTCCTCGTAGCCA 60.324 55.000 0.00 0.00 0.00 4.75
2535 2610 0.103208 CCATCTGTCCTCGTAGCCAC 59.897 60.000 0.00 0.00 0.00 5.01
2536 2611 0.103208 CATCTGTCCTCGTAGCCACC 59.897 60.000 0.00 0.00 0.00 4.61
2537 2612 0.033011 ATCTGTCCTCGTAGCCACCT 60.033 55.000 0.00 0.00 0.00 4.00
2538 2613 0.965866 TCTGTCCTCGTAGCCACCTG 60.966 60.000 0.00 0.00 0.00 4.00
2539 2614 2.184579 GTCCTCGTAGCCACCTGC 59.815 66.667 0.00 0.00 41.71 4.85
2541 2616 4.514577 CCTCGTAGCCACCTGCGG 62.515 72.222 1.68 0.00 45.55 5.69
2542 2617 3.449227 CTCGTAGCCACCTGCGGA 61.449 66.667 0.00 0.00 45.55 5.54
2543 2618 3.701604 CTCGTAGCCACCTGCGGAC 62.702 68.421 0.00 0.00 45.55 4.79
2550 2625 4.335647 CACCTGCGGACCCAAGCT 62.336 66.667 0.00 0.00 0.00 3.74
2551 2626 4.021925 ACCTGCGGACCCAAGCTC 62.022 66.667 0.00 0.00 0.00 4.09
2552 2627 4.785453 CCTGCGGACCCAAGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
2553 2628 4.785453 CTGCGGACCCAAGCTCCC 62.785 72.222 0.00 0.00 0.00 4.30
2602 2677 3.142838 GCCCGCTGCAATGGTCAT 61.143 61.111 0.00 0.00 40.77 3.06
2603 2678 3.113745 CCCGCTGCAATGGTCATC 58.886 61.111 0.00 0.00 0.00 2.92
2604 2679 2.711311 CCGCTGCAATGGTCATCG 59.289 61.111 0.00 0.00 0.00 3.84
2605 2680 2.711311 CGCTGCAATGGTCATCGG 59.289 61.111 0.00 0.00 0.00 4.18
2606 2681 1.815003 CGCTGCAATGGTCATCGGA 60.815 57.895 0.00 0.00 0.00 4.55
2607 2682 1.769098 CGCTGCAATGGTCATCGGAG 61.769 60.000 0.00 0.00 0.00 4.63
2608 2683 2.020131 CTGCAATGGTCATCGGAGC 58.980 57.895 0.00 0.00 41.89 4.70
2633 2708 3.450115 GCAGTCGCCGACCCTACT 61.450 66.667 14.60 0.00 32.18 2.57
2634 2709 2.490217 CAGTCGCCGACCCTACTG 59.510 66.667 14.60 0.88 32.18 2.74
2635 2710 3.450115 AGTCGCCGACCCTACTGC 61.450 66.667 14.60 0.00 32.18 4.40
2639 2714 4.509737 GCCGACCCTACTGCGACC 62.510 72.222 0.00 0.00 0.00 4.79
2640 2715 4.189188 CCGACCCTACTGCGACCG 62.189 72.222 0.00 0.00 0.00 4.79
2641 2716 4.189188 CGACCCTACTGCGACCGG 62.189 72.222 0.00 0.00 0.00 5.28
2642 2717 2.753043 GACCCTACTGCGACCGGA 60.753 66.667 9.46 0.00 0.00 5.14
2643 2718 2.043248 ACCCTACTGCGACCGGAT 60.043 61.111 9.46 0.00 0.00 4.18
2644 2719 2.073037 GACCCTACTGCGACCGGATC 62.073 65.000 9.46 0.32 0.00 3.36
2645 2720 2.728817 CCTACTGCGACCGGATCC 59.271 66.667 9.46 0.00 0.00 3.36
2646 2721 1.828660 CCTACTGCGACCGGATCCT 60.829 63.158 9.46 0.00 0.00 3.24
2647 2722 1.360551 CTACTGCGACCGGATCCTG 59.639 63.158 9.46 5.80 0.00 3.86
2648 2723 2.685387 CTACTGCGACCGGATCCTGC 62.685 65.000 9.46 9.03 0.00 4.85
2649 2724 4.147449 CTGCGACCGGATCCTGCA 62.147 66.667 9.46 13.07 0.00 4.41
2650 2725 4.147449 TGCGACCGGATCCTGCAG 62.147 66.667 9.46 6.78 0.00 4.41
2652 2727 4.899239 CGACCGGATCCTGCAGCC 62.899 72.222 9.46 3.15 0.00 4.85
2653 2728 3.474570 GACCGGATCCTGCAGCCT 61.475 66.667 9.46 0.00 0.00 4.58
2654 2729 3.453070 GACCGGATCCTGCAGCCTC 62.453 68.421 9.46 6.70 0.00 4.70
2655 2730 4.598894 CCGGATCCTGCAGCCTCG 62.599 72.222 8.66 8.93 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 2.096248 AGTCAAGCTCCTTAGGTCTCG 58.904 52.381 0.00 0.00 31.54 4.04
443 465 8.128582 GTGTGATTCTGTATCTGACAACAAAAA 58.871 33.333 0.00 0.00 37.70 1.94
448 470 8.598924 CATAAGTGTGATTCTGTATCTGACAAC 58.401 37.037 0.00 0.00 37.70 3.32
684 714 2.826777 AATGCCACCCTCTTGGAGCG 62.827 60.000 0.00 0.00 39.24 5.03
774 804 3.609853 CTCAAAATTGTCATCCTCCCGA 58.390 45.455 0.00 0.00 0.00 5.14
775 805 2.098117 GCTCAAAATTGTCATCCTCCCG 59.902 50.000 0.00 0.00 0.00 5.14
861 891 2.547634 GGATGGCATTTGCAAACGTTTT 59.452 40.909 15.41 0.00 44.36 2.43
905 935 7.232127 TCCTATAGTACGTTTAGAATCCCCTTG 59.768 40.741 0.00 0.00 0.00 3.61
1425 1479 0.179029 AAACCCAGTCCACCAGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
1499 1553 2.124903 GAGCAAAGTTGAAGTCGTCGA 58.875 47.619 0.00 0.00 0.00 4.20
1551 1605 2.189521 GGGTCCGGGTATGTGCAG 59.810 66.667 0.00 0.00 0.00 4.41
1601 1655 4.033009 TGGAGCTTGGTCAGATAAGATCA 58.967 43.478 14.10 0.00 40.17 2.92
1611 1665 2.401699 CTGGCAGTGGAGCTTGGTCA 62.402 60.000 6.28 0.00 34.17 4.02
1683 1737 0.322546 GGACCTAAGGGGCTGTGTTG 60.323 60.000 0.00 0.00 41.42 3.33
1692 1746 3.830121 ACTATCAGTACGGACCTAAGGG 58.170 50.000 0.00 0.00 38.88 3.95
1693 1747 5.848833 AAACTATCAGTACGGACCTAAGG 57.151 43.478 0.00 0.00 0.00 2.69
1745 1799 5.767168 ACAGCTTTTTCAGAATCTACAGCTT 59.233 36.000 0.00 0.00 34.09 3.74
1780 1855 0.398696 TTCCAGCTTTTCGGCACCTA 59.601 50.000 0.00 0.00 34.17 3.08
1786 1861 3.115554 CAAACAGTTTCCAGCTTTTCGG 58.884 45.455 0.00 0.00 0.00 4.30
1841 1916 3.573538 GCACCATGGGCATTACATAATCA 59.426 43.478 18.09 0.00 0.00 2.57
1842 1917 3.056607 GGCACCATGGGCATTACATAATC 60.057 47.826 18.09 0.00 0.00 1.75
1906 1981 9.507329 GATTCCTACCAATGTACATATCATTGT 57.493 33.333 9.21 0.00 45.91 2.71
1929 2004 4.942852 TCTTGCAAAATGGTTGTTCGATT 58.057 34.783 0.00 0.00 0.00 3.34
1932 2007 5.462034 TTTTCTTGCAAAATGGTTGTTCG 57.538 34.783 0.00 0.00 0.00 3.95
1962 2037 4.517832 GGACTAAGTGGTCGGTCAAAATTT 59.482 41.667 0.00 0.00 37.12 1.82
1965 2040 2.224354 GGGACTAAGTGGTCGGTCAAAA 60.224 50.000 0.00 0.00 37.12 2.44
1982 2057 9.974980 TCACATTTATTTTCTTTAAACAGGGAC 57.025 29.630 0.00 0.00 0.00 4.46
2000 2075 7.658525 ATGGACTGGCATTATTTCACATTTA 57.341 32.000 0.00 0.00 0.00 1.40
2003 2078 6.342906 CAAATGGACTGGCATTATTTCACAT 58.657 36.000 0.00 0.00 0.00 3.21
2004 2079 5.722263 CAAATGGACTGGCATTATTTCACA 58.278 37.500 0.00 0.00 0.00 3.58
2016 2091 8.169977 AGTATGTATATTTGCAAATGGACTGG 57.830 34.615 30.43 0.00 0.00 4.00
2064 2139 1.784856 GCCAGTACGTATGTGTATGCG 59.215 52.381 0.00 0.00 46.07 4.73
2091 2166 9.587772 CGGAGGGAGTATATGTATAAATTTCAG 57.412 37.037 0.00 0.00 0.00 3.02
2092 2167 9.096823 ACGGAGGGAGTATATGTATAAATTTCA 57.903 33.333 0.00 0.00 0.00 2.69
2097 2172 9.592196 AGTTTACGGAGGGAGTATATGTATAAA 57.408 33.333 0.00 0.00 0.00 1.40
2100 2175 9.765295 ATTAGTTTACGGAGGGAGTATATGTAT 57.235 33.333 0.00 0.00 0.00 2.29
2102 2177 9.765295 ATATTAGTTTACGGAGGGAGTATATGT 57.235 33.333 0.00 0.00 0.00 2.29
2107 2182 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2108 2183 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
2109 2184 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
2110 2185 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
2111 2186 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
2112 2187 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
2129 2204 9.429359 CATCAAAGTAGTGATCTAAACACTCTT 57.571 33.333 0.00 0.00 45.58 2.85
2130 2205 8.807118 TCATCAAAGTAGTGATCTAAACACTCT 58.193 33.333 0.00 0.00 45.58 3.24
2131 2206 8.988064 TCATCAAAGTAGTGATCTAAACACTC 57.012 34.615 0.00 0.00 45.58 3.51
2142 2217 9.778741 AGAGTGTTTAAATCATCAAAGTAGTGA 57.221 29.630 0.00 0.00 0.00 3.41
2162 2237 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
2164 2239 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
2170 2245 8.871125 CCATGTACTCCCTCTGTAAACTAATAT 58.129 37.037 0.00 0.00 0.00 1.28
2171 2246 7.201974 GCCATGTACTCCCTCTGTAAACTAATA 60.202 40.741 0.00 0.00 0.00 0.98
2172 2247 6.408206 GCCATGTACTCCCTCTGTAAACTAAT 60.408 42.308 0.00 0.00 0.00 1.73
2173 2248 5.105064 GCCATGTACTCCCTCTGTAAACTAA 60.105 44.000 0.00 0.00 0.00 2.24
2174 2249 4.404715 GCCATGTACTCCCTCTGTAAACTA 59.595 45.833 0.00 0.00 0.00 2.24
2175 2250 3.197983 GCCATGTACTCCCTCTGTAAACT 59.802 47.826 0.00 0.00 0.00 2.66
2176 2251 3.055385 TGCCATGTACTCCCTCTGTAAAC 60.055 47.826 0.00 0.00 0.00 2.01
2177 2252 3.178046 TGCCATGTACTCCCTCTGTAAA 58.822 45.455 0.00 0.00 0.00 2.01
2178 2253 2.766263 CTGCCATGTACTCCCTCTGTAA 59.234 50.000 0.00 0.00 0.00 2.41
2179 2254 2.292257 ACTGCCATGTACTCCCTCTGTA 60.292 50.000 0.00 0.00 0.00 2.74
2180 2255 1.198713 CTGCCATGTACTCCCTCTGT 58.801 55.000 0.00 0.00 0.00 3.41
2181 2256 1.134580 CACTGCCATGTACTCCCTCTG 60.135 57.143 0.00 0.00 0.00 3.35
2182 2257 1.198713 CACTGCCATGTACTCCCTCT 58.801 55.000 0.00 0.00 0.00 3.69
2183 2258 0.462759 GCACTGCCATGTACTCCCTC 60.463 60.000 0.00 0.00 0.00 4.30
2184 2259 0.911525 AGCACTGCCATGTACTCCCT 60.912 55.000 0.00 0.00 0.00 4.20
2185 2260 0.462759 GAGCACTGCCATGTACTCCC 60.463 60.000 0.00 0.00 0.00 4.30
2186 2261 0.539051 AGAGCACTGCCATGTACTCC 59.461 55.000 0.00 0.00 32.30 3.85
2187 2262 3.320541 AGATAGAGCACTGCCATGTACTC 59.679 47.826 0.00 0.00 32.12 2.59
2188 2263 3.303938 AGATAGAGCACTGCCATGTACT 58.696 45.455 0.00 0.00 0.00 2.73
2189 2264 3.320541 AGAGATAGAGCACTGCCATGTAC 59.679 47.826 0.00 0.00 0.00 2.90
2190 2265 3.320256 CAGAGATAGAGCACTGCCATGTA 59.680 47.826 0.00 0.00 0.00 2.29
2191 2266 2.102757 CAGAGATAGAGCACTGCCATGT 59.897 50.000 0.00 0.00 0.00 3.21
2192 2267 2.364647 TCAGAGATAGAGCACTGCCATG 59.635 50.000 0.00 0.00 0.00 3.66
2193 2268 2.675583 TCAGAGATAGAGCACTGCCAT 58.324 47.619 0.00 0.00 0.00 4.40
2194 2269 2.149973 TCAGAGATAGAGCACTGCCA 57.850 50.000 0.00 0.00 0.00 4.92
2195 2270 3.533606 TTTCAGAGATAGAGCACTGCC 57.466 47.619 0.00 0.00 0.00 4.85
2196 2271 5.174761 CGTATTTTCAGAGATAGAGCACTGC 59.825 44.000 0.00 0.00 0.00 4.40
2197 2272 5.689514 CCGTATTTTCAGAGATAGAGCACTG 59.310 44.000 0.00 0.00 0.00 3.66
2198 2273 5.594725 TCCGTATTTTCAGAGATAGAGCACT 59.405 40.000 0.00 0.00 0.00 4.40
2199 2274 5.833082 TCCGTATTTTCAGAGATAGAGCAC 58.167 41.667 0.00 0.00 0.00 4.40
2200 2275 5.594725 ACTCCGTATTTTCAGAGATAGAGCA 59.405 40.000 0.00 0.00 0.00 4.26
2201 2276 6.079424 ACTCCGTATTTTCAGAGATAGAGC 57.921 41.667 0.00 0.00 0.00 4.09
2202 2277 8.155821 TGTACTCCGTATTTTCAGAGATAGAG 57.844 38.462 0.00 0.00 0.00 2.43
2203 2278 7.774157 ACTGTACTCCGTATTTTCAGAGATAGA 59.226 37.037 0.00 0.00 0.00 1.98
2204 2279 7.932335 ACTGTACTCCGTATTTTCAGAGATAG 58.068 38.462 0.00 0.00 0.00 2.08
2205 2280 7.555195 TGACTGTACTCCGTATTTTCAGAGATA 59.445 37.037 0.00 0.00 0.00 1.98
2206 2281 6.377429 TGACTGTACTCCGTATTTTCAGAGAT 59.623 38.462 0.00 0.00 0.00 2.75
2207 2282 5.708697 TGACTGTACTCCGTATTTTCAGAGA 59.291 40.000 0.00 0.00 0.00 3.10
2208 2283 5.950883 TGACTGTACTCCGTATTTTCAGAG 58.049 41.667 0.00 0.00 0.00 3.35
2209 2284 5.970317 TGACTGTACTCCGTATTTTCAGA 57.030 39.130 0.00 0.00 0.00 3.27
2210 2285 7.704271 TCTATGACTGTACTCCGTATTTTCAG 58.296 38.462 0.00 0.00 0.00 3.02
2211 2286 7.634671 TCTATGACTGTACTCCGTATTTTCA 57.365 36.000 0.00 0.00 0.00 2.69
2212 2287 8.569641 AGATCTATGACTGTACTCCGTATTTTC 58.430 37.037 0.00 0.00 0.00 2.29
2213 2288 8.353684 CAGATCTATGACTGTACTCCGTATTTT 58.646 37.037 0.00 0.00 0.00 1.82
2214 2289 7.502895 ACAGATCTATGACTGTACTCCGTATTT 59.497 37.037 0.00 0.00 44.06 1.40
2215 2290 6.999272 ACAGATCTATGACTGTACTCCGTATT 59.001 38.462 0.00 0.00 44.06 1.89
2216 2291 6.535540 ACAGATCTATGACTGTACTCCGTAT 58.464 40.000 0.00 0.00 44.06 3.06
2217 2292 5.926663 ACAGATCTATGACTGTACTCCGTA 58.073 41.667 0.00 0.00 44.06 4.02
2218 2293 4.783055 ACAGATCTATGACTGTACTCCGT 58.217 43.478 0.00 0.00 44.06 4.69
2225 2300 9.854668 ACAAGTATAGTACAGATCTATGACTGT 57.145 33.333 11.69 0.00 46.81 3.55
2235 2310 9.854668 ACAGTCAGATACAAGTATAGTACAGAT 57.145 33.333 0.00 0.00 0.00 2.90
2259 2334 6.884836 TCAGAGATAGAGCACTGTTTAGTACA 59.115 38.462 0.00 0.00 34.74 2.90
2260 2335 7.323049 TCAGAGATAGAGCACTGTTTAGTAC 57.677 40.000 0.00 0.00 34.74 2.73
2261 2336 7.939784 TTCAGAGATAGAGCACTGTTTAGTA 57.060 36.000 0.00 0.00 34.74 1.82
2262 2337 6.842437 TTCAGAGATAGAGCACTGTTTAGT 57.158 37.500 0.00 0.00 37.75 2.24
2263 2338 8.715191 AATTTCAGAGATAGAGCACTGTTTAG 57.285 34.615 0.00 0.00 0.00 1.85
2264 2339 9.809096 CTAATTTCAGAGATAGAGCACTGTTTA 57.191 33.333 0.00 0.00 0.00 2.01
2265 2340 7.768120 CCTAATTTCAGAGATAGAGCACTGTTT 59.232 37.037 0.00 0.00 0.00 2.83
2266 2341 7.124901 TCCTAATTTCAGAGATAGAGCACTGTT 59.875 37.037 0.00 0.00 0.00 3.16
2267 2342 6.609212 TCCTAATTTCAGAGATAGAGCACTGT 59.391 38.462 0.00 0.00 0.00 3.55
2268 2343 7.048629 TCCTAATTTCAGAGATAGAGCACTG 57.951 40.000 0.00 0.00 0.00 3.66
2269 2344 6.838612 ACTCCTAATTTCAGAGATAGAGCACT 59.161 38.462 6.18 0.00 0.00 4.40
2270 2345 7.049799 ACTCCTAATTTCAGAGATAGAGCAC 57.950 40.000 6.18 0.00 0.00 4.40
2271 2346 8.948401 ATACTCCTAATTTCAGAGATAGAGCA 57.052 34.615 6.18 0.00 0.00 4.26
2288 2363 9.506018 GTGGTAGTTTTTGGTTAAATACTCCTA 57.494 33.333 0.00 0.00 38.47 2.94
2289 2364 8.000127 TGTGGTAGTTTTTGGTTAAATACTCCT 59.000 33.333 0.00 0.00 38.47 3.69
2290 2365 8.168790 TGTGGTAGTTTTTGGTTAAATACTCC 57.831 34.615 0.00 0.00 38.47 3.85
2296 2371 9.319143 CATGAATTGTGGTAGTTTTTGGTTAAA 57.681 29.630 0.00 0.00 0.00 1.52
2297 2372 7.928706 CCATGAATTGTGGTAGTTTTTGGTTAA 59.071 33.333 0.00 0.00 31.96 2.01
2298 2373 7.287927 TCCATGAATTGTGGTAGTTTTTGGTTA 59.712 33.333 0.00 0.00 37.96 2.85
2299 2374 6.098982 TCCATGAATTGTGGTAGTTTTTGGTT 59.901 34.615 0.00 0.00 37.96 3.67
2300 2375 5.600484 TCCATGAATTGTGGTAGTTTTTGGT 59.400 36.000 0.00 0.00 37.96 3.67
2301 2376 6.095432 TCCATGAATTGTGGTAGTTTTTGG 57.905 37.500 0.00 0.00 37.96 3.28
2302 2377 8.606040 ATTTCCATGAATTGTGGTAGTTTTTG 57.394 30.769 0.00 0.00 37.96 2.44
2304 2379 9.874205 CATATTTCCATGAATTGTGGTAGTTTT 57.126 29.630 0.00 0.00 37.96 2.43
2305 2380 9.034800 ACATATTTCCATGAATTGTGGTAGTTT 57.965 29.630 0.00 0.00 37.96 2.66
2306 2381 8.593945 ACATATTTCCATGAATTGTGGTAGTT 57.406 30.769 0.00 0.00 37.96 2.24
2307 2382 7.012327 CGACATATTTCCATGAATTGTGGTAGT 59.988 37.037 0.00 0.00 37.96 2.73
2308 2383 7.226523 TCGACATATTTCCATGAATTGTGGTAG 59.773 37.037 0.00 0.00 37.96 3.18
2309 2384 7.051000 TCGACATATTTCCATGAATTGTGGTA 58.949 34.615 0.00 0.00 37.96 3.25
2310 2385 5.885352 TCGACATATTTCCATGAATTGTGGT 59.115 36.000 0.00 0.00 37.96 4.16
2311 2386 6.260714 TCTCGACATATTTCCATGAATTGTGG 59.739 38.462 0.00 0.87 38.11 4.17
2312 2387 7.250445 TCTCGACATATTTCCATGAATTGTG 57.750 36.000 0.00 0.00 0.00 3.33
2313 2388 7.864108 TTCTCGACATATTTCCATGAATTGT 57.136 32.000 0.00 0.00 0.00 2.71
2314 2389 8.400947 AGTTTCTCGACATATTTCCATGAATTG 58.599 33.333 0.00 0.00 0.00 2.32
2315 2390 8.511604 AGTTTCTCGACATATTTCCATGAATT 57.488 30.769 0.00 0.00 0.00 2.17
2316 2391 9.046296 GTAGTTTCTCGACATATTTCCATGAAT 57.954 33.333 0.00 0.00 0.00 2.57
2317 2392 8.038351 TGTAGTTTCTCGACATATTTCCATGAA 58.962 33.333 0.00 0.00 0.00 2.57
2318 2393 7.552459 TGTAGTTTCTCGACATATTTCCATGA 58.448 34.615 0.00 0.00 0.00 3.07
2319 2394 7.770801 TGTAGTTTCTCGACATATTTCCATG 57.229 36.000 0.00 0.00 0.00 3.66
2320 2395 8.041323 AGTTGTAGTTTCTCGACATATTTCCAT 58.959 33.333 0.00 0.00 32.22 3.41
2321 2396 7.383687 AGTTGTAGTTTCTCGACATATTTCCA 58.616 34.615 0.00 0.00 32.22 3.53
2322 2397 7.829378 AGTTGTAGTTTCTCGACATATTTCC 57.171 36.000 0.00 0.00 32.22 3.13
2325 2400 8.857216 CGTAAAGTTGTAGTTTCTCGACATATT 58.143 33.333 0.00 0.00 32.22 1.28
2326 2401 8.239314 TCGTAAAGTTGTAGTTTCTCGACATAT 58.761 33.333 0.00 0.00 32.22 1.78
2327 2402 7.584108 TCGTAAAGTTGTAGTTTCTCGACATA 58.416 34.615 0.00 0.00 32.22 2.29
2328 2403 6.441274 TCGTAAAGTTGTAGTTTCTCGACAT 58.559 36.000 0.00 0.00 32.22 3.06
2329 2404 5.820131 TCGTAAAGTTGTAGTTTCTCGACA 58.180 37.500 0.00 0.00 29.36 4.35
2330 2405 6.924629 ATCGTAAAGTTGTAGTTTCTCGAC 57.075 37.500 0.00 0.00 33.51 4.20
2331 2406 7.935338 AAATCGTAAAGTTGTAGTTTCTCGA 57.065 32.000 0.00 0.00 34.38 4.04
2332 2407 8.060090 ACAAAATCGTAAAGTTGTAGTTTCTCG 58.940 33.333 0.00 0.00 32.58 4.04
2333 2408 9.155053 CACAAAATCGTAAAGTTGTAGTTTCTC 57.845 33.333 0.00 0.00 33.04 2.87
2334 2409 7.642586 GCACAAAATCGTAAAGTTGTAGTTTCT 59.357 33.333 0.00 0.00 33.04 2.52
2335 2410 7.096763 GGCACAAAATCGTAAAGTTGTAGTTTC 60.097 37.037 0.00 0.00 33.04 2.78
2336 2411 6.693978 GGCACAAAATCGTAAAGTTGTAGTTT 59.306 34.615 0.00 0.00 33.04 2.66
2337 2412 6.183360 TGGCACAAAATCGTAAAGTTGTAGTT 60.183 34.615 0.00 0.00 33.04 2.24
2338 2413 5.297278 TGGCACAAAATCGTAAAGTTGTAGT 59.703 36.000 0.00 0.00 33.04 2.73
2339 2414 5.753744 TGGCACAAAATCGTAAAGTTGTAG 58.246 37.500 0.00 0.00 33.04 2.74
2340 2415 5.752892 TGGCACAAAATCGTAAAGTTGTA 57.247 34.783 0.00 0.00 33.04 2.41
2341 2416 4.640789 TGGCACAAAATCGTAAAGTTGT 57.359 36.364 0.00 0.00 34.60 3.32
2354 2429 8.689788 GACAAAAGTGGTAGTTTTTGGCACAAA 61.690 37.037 9.89 0.00 46.57 2.83
2355 2430 7.286565 GACAAAAGTGGTAGTTTTTGGCACAA 61.287 38.462 9.89 0.00 46.57 3.33
2356 2431 4.021016 ACAAAAGTGGTAGTTTTTGGCACA 60.021 37.500 12.56 0.00 44.51 4.57
2357 2432 4.500127 ACAAAAGTGGTAGTTTTTGGCAC 58.500 39.130 12.56 0.00 44.51 5.01
2358 2433 4.749976 GACAAAAGTGGTAGTTTTTGGCA 58.250 39.130 9.89 0.00 46.57 4.92
2359 2434 4.116961 GGACAAAAGTGGTAGTTTTTGGC 58.883 43.478 12.56 9.92 46.60 4.52
2360 2435 5.592104 AGGACAAAAGTGGTAGTTTTTGG 57.408 39.130 12.56 0.00 44.51 3.28
2361 2436 8.630037 AGATTAGGACAAAAGTGGTAGTTTTTG 58.370 33.333 7.83 7.83 45.28 2.44
2362 2437 8.630037 CAGATTAGGACAAAAGTGGTAGTTTTT 58.370 33.333 0.00 0.00 28.88 1.94
2363 2438 7.778382 ACAGATTAGGACAAAAGTGGTAGTTTT 59.222 33.333 0.00 0.00 31.34 2.43
2364 2439 7.287810 ACAGATTAGGACAAAAGTGGTAGTTT 58.712 34.615 0.00 0.00 0.00 2.66
2365 2440 6.838382 ACAGATTAGGACAAAAGTGGTAGTT 58.162 36.000 0.00 0.00 0.00 2.24
2366 2441 6.435292 ACAGATTAGGACAAAAGTGGTAGT 57.565 37.500 0.00 0.00 0.00 2.73
2367 2442 6.348540 GCAACAGATTAGGACAAAAGTGGTAG 60.349 42.308 0.00 0.00 0.00 3.18
2368 2443 5.472137 GCAACAGATTAGGACAAAAGTGGTA 59.528 40.000 0.00 0.00 0.00 3.25
2369 2444 4.278419 GCAACAGATTAGGACAAAAGTGGT 59.722 41.667 0.00 0.00 0.00 4.16
2370 2445 4.520492 AGCAACAGATTAGGACAAAAGTGG 59.480 41.667 0.00 0.00 0.00 4.00
2371 2446 5.695851 AGCAACAGATTAGGACAAAAGTG 57.304 39.130 0.00 0.00 0.00 3.16
2372 2447 7.817418 TTTAGCAACAGATTAGGACAAAAGT 57.183 32.000 0.00 0.00 0.00 2.66
2373 2448 8.968242 GTTTTTAGCAACAGATTAGGACAAAAG 58.032 33.333 0.00 0.00 0.00 2.27
2374 2449 8.691797 AGTTTTTAGCAACAGATTAGGACAAAA 58.308 29.630 0.00 0.00 0.00 2.44
2375 2450 8.232913 AGTTTTTAGCAACAGATTAGGACAAA 57.767 30.769 0.00 0.00 0.00 2.83
2376 2451 7.817418 AGTTTTTAGCAACAGATTAGGACAA 57.183 32.000 0.00 0.00 0.00 3.18
2377 2452 7.389607 GGTAGTTTTTAGCAACAGATTAGGACA 59.610 37.037 0.00 0.00 0.00 4.02
2378 2453 7.389607 TGGTAGTTTTTAGCAACAGATTAGGAC 59.610 37.037 0.00 0.00 0.00 3.85
2379 2454 7.455058 TGGTAGTTTTTAGCAACAGATTAGGA 58.545 34.615 0.00 0.00 0.00 2.94
2380 2455 7.681939 TGGTAGTTTTTAGCAACAGATTAGG 57.318 36.000 0.00 0.00 0.00 2.69
2381 2456 8.784043 ACTTGGTAGTTTTTAGCAACAGATTAG 58.216 33.333 0.00 0.00 32.40 1.73
2382 2457 8.564574 CACTTGGTAGTTTTTAGCAACAGATTA 58.435 33.333 0.00 0.00 32.40 1.75
2383 2458 7.068226 ACACTTGGTAGTTTTTAGCAACAGATT 59.932 33.333 0.00 0.00 32.40 2.40
2384 2459 6.546034 ACACTTGGTAGTTTTTAGCAACAGAT 59.454 34.615 0.00 0.00 32.40 2.90
2385 2460 5.883673 ACACTTGGTAGTTTTTAGCAACAGA 59.116 36.000 0.00 0.00 32.40 3.41
2386 2461 5.971202 CACACTTGGTAGTTTTTAGCAACAG 59.029 40.000 0.00 0.00 32.40 3.16
2387 2462 5.648526 TCACACTTGGTAGTTTTTAGCAACA 59.351 36.000 0.00 0.00 32.40 3.33
2388 2463 6.126568 TCACACTTGGTAGTTTTTAGCAAC 57.873 37.500 0.00 0.00 32.40 4.17
2389 2464 6.761099 TTCACACTTGGTAGTTTTTAGCAA 57.239 33.333 0.00 0.00 34.33 3.91
2390 2465 6.761099 TTTCACACTTGGTAGTTTTTAGCA 57.239 33.333 0.00 0.00 30.26 3.49
2391 2466 7.220108 CAGTTTTCACACTTGGTAGTTTTTAGC 59.780 37.037 0.00 0.00 30.26 3.09
2392 2467 7.220108 GCAGTTTTCACACTTGGTAGTTTTTAG 59.780 37.037 0.00 0.00 30.26 1.85
2393 2468 7.030768 GCAGTTTTCACACTTGGTAGTTTTTA 58.969 34.615 0.00 0.00 30.26 1.52
2394 2469 5.867174 GCAGTTTTCACACTTGGTAGTTTTT 59.133 36.000 0.00 0.00 30.26 1.94
2395 2470 5.185056 AGCAGTTTTCACACTTGGTAGTTTT 59.815 36.000 0.00 0.00 30.26 2.43
2396 2471 4.705023 AGCAGTTTTCACACTTGGTAGTTT 59.295 37.500 0.00 0.00 30.26 2.66
2397 2472 4.270008 AGCAGTTTTCACACTTGGTAGTT 58.730 39.130 0.00 0.00 30.26 2.24
2398 2473 3.877508 GAGCAGTTTTCACACTTGGTAGT 59.122 43.478 0.00 0.00 34.00 2.73
2399 2474 3.059597 CGAGCAGTTTTCACACTTGGTAG 60.060 47.826 0.00 0.00 0.00 3.18
2400 2475 2.869801 CGAGCAGTTTTCACACTTGGTA 59.130 45.455 0.00 0.00 0.00 3.25
2401 2476 1.670811 CGAGCAGTTTTCACACTTGGT 59.329 47.619 0.00 0.00 0.00 3.67
2402 2477 1.597937 GCGAGCAGTTTTCACACTTGG 60.598 52.381 0.00 0.00 0.00 3.61
2403 2478 1.331756 AGCGAGCAGTTTTCACACTTG 59.668 47.619 0.00 0.00 0.00 3.16
2404 2479 1.668419 AGCGAGCAGTTTTCACACTT 58.332 45.000 0.00 0.00 0.00 3.16
2405 2480 1.668419 AAGCGAGCAGTTTTCACACT 58.332 45.000 0.00 0.00 0.00 3.55
2406 2481 2.111756 CAAAGCGAGCAGTTTTCACAC 58.888 47.619 0.00 0.00 30.63 3.82
2407 2482 1.533756 GCAAAGCGAGCAGTTTTCACA 60.534 47.619 0.00 0.00 30.63 3.58
2408 2483 1.123655 GCAAAGCGAGCAGTTTTCAC 58.876 50.000 0.00 0.00 30.63 3.18
2409 2484 0.030638 GGCAAAGCGAGCAGTTTTCA 59.969 50.000 0.00 0.00 30.63 2.69
2410 2485 0.312102 AGGCAAAGCGAGCAGTTTTC 59.688 50.000 0.00 0.00 30.63 2.29
2411 2486 0.031178 CAGGCAAAGCGAGCAGTTTT 59.969 50.000 0.00 0.00 33.40 2.43
2412 2487 1.656441 CAGGCAAAGCGAGCAGTTT 59.344 52.632 0.00 0.00 0.00 2.66
2413 2488 2.263741 CCAGGCAAAGCGAGCAGTT 61.264 57.895 0.00 0.00 0.00 3.16
2414 2489 2.670934 CCAGGCAAAGCGAGCAGT 60.671 61.111 0.00 0.00 0.00 4.40
2415 2490 3.437795 CCCAGGCAAAGCGAGCAG 61.438 66.667 0.00 0.00 0.00 4.24
2417 2492 3.976701 TAGCCCAGGCAAAGCGAGC 62.977 63.158 12.03 0.00 44.88 5.03
2418 2493 0.960364 TTTAGCCCAGGCAAAGCGAG 60.960 55.000 12.03 0.00 44.88 5.03
2419 2494 1.074072 TTTAGCCCAGGCAAAGCGA 59.926 52.632 12.03 0.00 44.88 4.93
2420 2495 1.212751 GTTTAGCCCAGGCAAAGCG 59.787 57.895 12.03 0.00 44.88 4.68
2421 2496 1.591703 GGTTTAGCCCAGGCAAAGC 59.408 57.895 12.03 13.99 44.88 3.51
2431 2506 2.280628 CAGTCAGATTCGGGTTTAGCC 58.719 52.381 0.00 0.00 0.00 3.93
2432 2507 1.666189 GCAGTCAGATTCGGGTTTAGC 59.334 52.381 0.00 0.00 0.00 3.09
2433 2508 2.280628 GGCAGTCAGATTCGGGTTTAG 58.719 52.381 0.00 0.00 0.00 1.85
2434 2509 1.065709 GGGCAGTCAGATTCGGGTTTA 60.066 52.381 0.00 0.00 0.00 2.01
2435 2510 0.322546 GGGCAGTCAGATTCGGGTTT 60.323 55.000 0.00 0.00 0.00 3.27
2436 2511 1.299976 GGGCAGTCAGATTCGGGTT 59.700 57.895 0.00 0.00 0.00 4.11
2437 2512 2.990479 GGGCAGTCAGATTCGGGT 59.010 61.111 0.00 0.00 0.00 5.28
2438 2513 2.202932 CGGGCAGTCAGATTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
2439 2514 1.519455 GTCGGGCAGTCAGATTCGG 60.519 63.158 0.00 0.00 0.00 4.30
2440 2515 1.519455 GGTCGGGCAGTCAGATTCG 60.519 63.158 0.00 0.00 0.00 3.34
2441 2516 1.153349 GGGTCGGGCAGTCAGATTC 60.153 63.158 0.00 0.00 0.00 2.52
2442 2517 2.670148 GGGGTCGGGCAGTCAGATT 61.670 63.158 0.00 0.00 0.00 2.40
2443 2518 3.083997 GGGGTCGGGCAGTCAGAT 61.084 66.667 0.00 0.00 0.00 2.90
2444 2519 4.631740 TGGGGTCGGGCAGTCAGA 62.632 66.667 0.00 0.00 0.00 3.27
2445 2520 4.394712 GTGGGGTCGGGCAGTCAG 62.395 72.222 0.00 0.00 0.00 3.51
2446 2521 4.954118 AGTGGGGTCGGGCAGTCA 62.954 66.667 0.00 0.00 0.00 3.41
2447 2522 4.394712 CAGTGGGGTCGGGCAGTC 62.395 72.222 0.00 0.00 0.00 3.51
2449 2524 2.119484 TAAACAGTGGGGTCGGGCAG 62.119 60.000 0.00 0.00 0.00 4.85
2450 2525 1.706995 TTAAACAGTGGGGTCGGGCA 61.707 55.000 0.00 0.00 0.00 5.36
2451 2526 0.958876 CTTAAACAGTGGGGTCGGGC 60.959 60.000 0.00 0.00 0.00 6.13
2452 2527 0.399075 ACTTAAACAGTGGGGTCGGG 59.601 55.000 0.00 0.00 32.83 5.14
2461 2536 0.944386 CACGCTGGCACTTAAACAGT 59.056 50.000 0.00 0.00 35.35 3.55
2462 2537 0.238289 CCACGCTGGCACTTAAACAG 59.762 55.000 0.00 0.00 35.40 3.16
2463 2538 2.326222 CCACGCTGGCACTTAAACA 58.674 52.632 0.00 0.00 0.00 2.83
2482 2557 3.570638 CTGGCCATGAGCGCTTCG 61.571 66.667 13.26 2.56 45.17 3.79
2483 2558 3.885521 GCTGGCCATGAGCGCTTC 61.886 66.667 13.26 5.55 45.17 3.86
2488 2563 1.748879 TTAACGGCTGGCCATGAGC 60.749 57.895 5.51 6.36 42.60 4.26
2489 2564 1.705337 CGTTAACGGCTGGCCATGAG 61.705 60.000 20.24 2.42 35.37 2.90
2490 2565 1.743623 CGTTAACGGCTGGCCATGA 60.744 57.895 20.24 0.00 35.37 3.07
2491 2566 2.791256 CGTTAACGGCTGGCCATG 59.209 61.111 20.24 1.27 35.37 3.66
2492 2567 3.131478 GCGTTAACGGCTGGCCAT 61.131 61.111 27.82 0.00 40.23 4.40
2500 2575 3.113979 GGTCACGGGCGTTAACGG 61.114 66.667 27.82 14.70 40.23 4.44
2501 2576 1.689352 GATGGTCACGGGCGTTAACG 61.689 60.000 23.40 23.40 43.27 3.18
2502 2577 0.390735 AGATGGTCACGGGCGTTAAC 60.391 55.000 0.00 0.00 0.00 2.01
2503 2578 0.390603 CAGATGGTCACGGGCGTTAA 60.391 55.000 0.00 0.00 0.00 2.01
2504 2579 1.216977 CAGATGGTCACGGGCGTTA 59.783 57.895 0.00 0.00 0.00 3.18
2505 2580 2.047274 CAGATGGTCACGGGCGTT 60.047 61.111 0.00 0.00 0.00 4.84
2506 2581 3.296709 GACAGATGGTCACGGGCGT 62.297 63.158 0.00 0.00 46.19 5.68
2507 2582 2.509336 GACAGATGGTCACGGGCG 60.509 66.667 0.00 0.00 46.19 6.13
2514 2589 0.386113 GGCTACGAGGACAGATGGTC 59.614 60.000 0.00 0.00 46.20 4.02
2515 2590 0.324368 TGGCTACGAGGACAGATGGT 60.324 55.000 0.00 0.00 0.00 3.55
2516 2591 0.103208 GTGGCTACGAGGACAGATGG 59.897 60.000 0.00 0.00 0.00 3.51
2517 2592 0.103208 GGTGGCTACGAGGACAGATG 59.897 60.000 0.00 0.00 0.00 2.90
2518 2593 0.033011 AGGTGGCTACGAGGACAGAT 60.033 55.000 0.00 0.00 0.00 2.90
2519 2594 0.965866 CAGGTGGCTACGAGGACAGA 60.966 60.000 0.00 0.00 0.00 3.41
2520 2595 1.513158 CAGGTGGCTACGAGGACAG 59.487 63.158 0.00 0.00 0.00 3.51
2521 2596 2.646175 GCAGGTGGCTACGAGGACA 61.646 63.158 0.00 0.00 40.25 4.02
2522 2597 2.184579 GCAGGTGGCTACGAGGAC 59.815 66.667 0.00 0.00 40.25 3.85
2523 2598 3.449227 CGCAGGTGGCTACGAGGA 61.449 66.667 0.00 0.00 41.67 3.71
2585 2660 3.129913 GATGACCATTGCAGCGGGC 62.130 63.158 8.23 5.47 45.13 6.13
2586 2661 2.827051 CGATGACCATTGCAGCGGG 61.827 63.158 8.23 3.90 41.01 6.13
2587 2662 2.711311 CGATGACCATTGCAGCGG 59.289 61.111 2.06 2.06 41.01 5.52
2588 2663 1.769098 CTCCGATGACCATTGCAGCG 61.769 60.000 0.00 0.00 43.94 5.18
2589 2664 2.020131 CTCCGATGACCATTGCAGC 58.980 57.895 0.00 0.00 0.00 5.25
2590 2665 0.745486 TGCTCCGATGACCATTGCAG 60.745 55.000 0.00 0.00 0.00 4.41
2591 2666 1.026182 GTGCTCCGATGACCATTGCA 61.026 55.000 0.00 0.00 0.00 4.08
2592 2667 1.718757 GGTGCTCCGATGACCATTGC 61.719 60.000 0.00 0.00 0.00 3.56
2593 2668 2.397751 GGTGCTCCGATGACCATTG 58.602 57.895 0.00 0.00 0.00 2.82
2594 2669 4.963878 GGTGCTCCGATGACCATT 57.036 55.556 0.00 0.00 0.00 3.16
2616 2691 3.450115 AGTAGGGTCGGCGACTGC 61.450 66.667 35.42 22.05 41.71 4.40
2617 2692 2.490217 CAGTAGGGTCGGCGACTG 59.510 66.667 35.42 23.15 33.88 3.51
2618 2693 3.450115 GCAGTAGGGTCGGCGACT 61.450 66.667 35.42 21.73 32.47 4.18
2622 2697 4.509737 GGTCGCAGTAGGGTCGGC 62.510 72.222 0.00 0.00 0.00 5.54
2623 2698 4.189188 CGGTCGCAGTAGGGTCGG 62.189 72.222 0.00 0.00 0.00 4.79
2624 2699 4.189188 CCGGTCGCAGTAGGGTCG 62.189 72.222 0.00 0.00 0.00 4.79
2625 2700 2.073037 GATCCGGTCGCAGTAGGGTC 62.073 65.000 0.00 0.00 0.00 4.46
2626 2701 2.043248 ATCCGGTCGCAGTAGGGT 60.043 61.111 0.00 0.00 0.00 4.34
2627 2702 2.728817 GATCCGGTCGCAGTAGGG 59.271 66.667 0.00 0.00 0.00 3.53
2628 2703 1.828660 AGGATCCGGTCGCAGTAGG 60.829 63.158 5.98 0.00 0.00 3.18
2629 2704 1.360551 CAGGATCCGGTCGCAGTAG 59.639 63.158 5.98 0.00 0.00 2.57
2630 2705 2.782222 GCAGGATCCGGTCGCAGTA 61.782 63.158 13.75 0.00 0.00 2.74
2631 2706 4.148825 GCAGGATCCGGTCGCAGT 62.149 66.667 13.75 0.00 0.00 4.40
2632 2707 4.147449 TGCAGGATCCGGTCGCAG 62.147 66.667 13.75 0.00 0.00 5.18
2633 2708 4.147449 CTGCAGGATCCGGTCGCA 62.147 66.667 13.75 15.52 0.00 5.10
2635 2710 4.899239 GGCTGCAGGATCCGGTCG 62.899 72.222 17.12 6.04 0.00 4.79
2636 2711 3.453070 GAGGCTGCAGGATCCGGTC 62.453 68.421 17.12 6.57 0.00 4.79
2637 2712 3.474570 GAGGCTGCAGGATCCGGT 61.475 66.667 17.12 0.00 0.00 5.28
2638 2713 4.598894 CGAGGCTGCAGGATCCGG 62.599 72.222 17.12 7.64 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.