>input_sequence_72614
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---------------------------------------------------------------------ATGCCCAACCG
CAGCTTGGACAAACGCCTCTTCCGCGAGCCCCGCGGGACAGGCTTGACCTGGCCGCTCCGCTACAGCATGGTCAACGACG
TCGCCCGGGCGCTCTACCACCTGCACGTCACCAACGTTCCCCACGGGTCGATCAAGGCGTCCAACATCTTGCTCGAACAA
GACTTCGCCGCCCGGCTCCACGGGCACTTTGGCTACCAACCCGACCAGAGCAACACGCCCCGCGGTTCACTGGAGGCGGA
CATGCTGCAATTCGGTGTGCTGATATTGCAGGTCGTATGTGGGCCCCAGGGGCGGAGCCAGGCTAACACCGCGCCCTGGG
CCTGCTTCATCGCTACAGTGTTCAACTGGGTTCAACAGTGCAAAATCGCTACAGTCAACGAAGAAATAAATCTTCACGGC
------------------------CGGGGATCGCCGGCCGAACTGGTGGACTGGGTTTGGACGCTTCACGGGGAAAGTCG
CCTGCTCGAGGCGGTCGACCCAGCAGCGCGGGTCGACGACTTCAACTTTGCTCAGGCGACCAAGCTTCTTCTCATCGCCC
TCTCCTGCACATACCCGGACCCAGCGGCGCGGCTGACTATCTATGAGGTCCGCATGATCTTATCTGACCAAGCTCCACTG
CCAGAGGTTCCTCCATCCAAACCCACCTGA--------------------------------------------------
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>chr2D_1_TraesCS2D01G418100
GCCAGAGAAGCTGCTTTGGATGCTCCTCGCCTTGCCCGTGCCTGCCGACGAGCGTGCTCCTGCAGCCACCCAACACGGCT
GGCCGCCCGTGCAGCGGCCGGAGAAGGATGCCGTGATTATGGATCCCTTCTCGCCCTGCTCACGGGCGTCCTGGGCGAGA
CCTAAGGAGCTTGACTACGAACGGCTTCAAGTAGCAACCAACGACTTCCACATGAAATCTCGGATGCGCAAGCCGGGTTG
CCA-------------GTGGGTGGTGTACAAAGGTACCAAATTTGTGGCCGACGACGGCTTGCCCGCTGTTGTGGTCATC
AAGAGGTTCCACGAGATCATTAGCACGGAGCAGAGGGAGCGTATGGTGGACGATCTCAGCCGCATGACCACCCTACAACA
CAAGAACGTCGTAAGCCTACTCGG--------TATGTGACCTAGATGCAGTTCATTTACCTATATTTTTGTTGTCAG---
-ATACAGAATCACACTTATGGCAAATGTTAACATGCTCCCTCTTACCCCCTCTTTTTACATGTGAGGTAAGAAGATAAGA
GTTAATTAAACCACTAATTAATTAGATCAACGACTAAGATCTATTATACACTCTTATCTCTTGTGTGAAAAGAGTATGTT
TTTTATCAACAAATTATGCAC----CGATAGAGTAACGGTTAAATCGTACAGAAATTTTATCTGGATGACGTTCGCTCCA
AGAGGGTGGCATTTCAAATGTTATTGTTGTAGTTTTAGTTGTGTTGACTATGGCAGTTCCTTCAGAGAGCGACATAACAT
TTTTCGGGAGGATGACAATTTTGAGCCTTGAACCCAGAAAATGCAAAGCTGTTCTAAAGAAACGGCCACCCTCCACAATA
AAATGCCATCAAAACGTTTGCAAATGCCATCCCTCCCAGCGAATGTTTGCCAGCCAAGGGGATTCTAAACGTACTATAGG
AACATTGACGGTTGATTCTCTGCAGGATACAGCTTCGGAAATGGTTATTTTCATCTGGTGTACAGCTACATGCCCAACCG
CAGCTTGGACAAACGCCTCTTCCGCGAGCCCCGCGGGACAGGCTTGACCTGGCCGCTCCGCTACAGCATGGTCAACGACG
TCGCCCGGGCGCTCTACCACCTGCACGTCACCAACGTTCCCCACGGGTCGATCAAGGCGTCCAACATCTTGCTCGAACAA
GACTTCGCCGCCCGGCTCCACGGGCACTTTGGCTACCAACCCGACCAGAGCAACACGCCCCGCGGTTCACTGGAGGCGGA
CATGCTGCAATTCGGTGTGCTGATATTGCAGGTCGTATGTGGGCCCCAGGGGCGGAGCCAGGCTAACACCGCGCCCTGGG
CCTGCTTCATCGCTACAGTGTTCAACTGGGTTCAACAGTGCAAAATCGCTACAGTCAACGAAGAAATAAATCTTCACGGC
------------------------CGGGGATCGCCGGCCGAACTGGTGGACTGGGTTTGGACGCTTCACGGGGAAAGTCG
CCTGCTCGAGGCGGTCGACCCAGCAGCGCGGGTCGACGACTTCAACTTTGCTCAGGCGACCAAGCTTCTTCTCATCGCCC
TCTCCTGCACATACCCGGACCCAGCGGCGCGGCTGACTATCTATGAGGTCCGCATGATCTTATCTGACCAAGCTCCACTG
CCAGAGGTTCCTCCATCCAAACCCACCTGAGACATCATTCATACTCCCTCCATTCCCAACACAGCCCCTTAGGTCCGTAC
TGATAGTTTTACGTTGGTTCTAAGGCTGTTGTTTGGTTAAGCTGTAGATTCTGAAAAAGCTGTTGTGA------------
---------ACTTTTAGGTGCCGAAAAGCTGGAAACTGTTTGACTTAAACAAACTATGATACTAGATTTGGCTGTTGATT
ATGTAATGCCCATGGTGCCTGAGTCTGAGTGAATATGTTTATATGCTAATTGATCATAAAACAATGATATGTACATTGGT
AGGAATCGAACAACCATTTTGCAAGAAAAATTATGAAAATTTTGACCGACCACTTAGTCCCTGTTTAAAGAAAATAAATG
TGAAATAATGCCAGTCCATTTGCAAATATACATACTACTTTACTACAGTAGAATTTTACGCATACACATACGTACTGGCA
TATCTCTGAAATTTATACATATACTCCCTCCGTAAACTAATATAAGAGTGTTTAGATCACTACTTTGATGATTTAAACAC
TCTTATATTAGTTTACAGAGGGAGTACATGGCAGTGCTCTATCTCTGAAAATACGGAGTACAGTCATAGATCTGTACTAT
ACTTGTATCTGACTGTACTAAACAGTGCTCTATCTCTGAAATTAGGAGTATTTAACCAAAAACTACCACAATTCATGGAA
ATATGTCGAGAAACTACAACTTTACGATTTTGTGCCAAAAACTACCACTTTTGTCCTAATCTGTTGCTAAAAACTACCAA
GTGTGAAAACTGCTCGCTTTGCCTGGGCTAAACCCGAATCTGACTGCCCGACCCCACTGTTTAAGTGCCAGCGTGGCGAA
GCGCTCATGGCCAGCCGTTAACGCCCGTGACCATCTGTCCTCGTAGCCACCTGCGGACCCAAGCTCCCGCCACGCCCGCG
CCCCCGCTCGTCTCCCCTCGCCCGCTGCAATGGTCATCGGAGCACCGCCGGCAGTCGCCGACCCTACTGCGACCGGATCC
TGCAGCCTCGC
>chr2B_1
GCCAGAGAAGCTGCTTTGGATGCTCCTCGCCTTGCCCGTGCCCGCCGACGAGCGTGCTCCTGCAGCCACCCAAAACGGCT
GGCCGCCCGTGCAGCGGCCGGAGAAGGATGCCGTGATTATGGATCCCTTCTCGCCCTGCTCACGGGCATCCTGGGTGAGA
CCTAAGGAGATTGACTACGAACGGCTTCAAGTAGCAACCAACGACTTCCACATGAAATCTCGGATGCGCAAGCCGGGTTG
CCAGTCCGGGTTGCCAGTGGGTGGTGTACAAAGGTACCAAATTTGTGGCCGACGACGGCTTGCCCGCTGTTGTGGTCATC
AAGAGGTTCCACGAGATCATTAGCACGGAGCAGAGGGAGCGTATGGTGGACGATCTCAGCCGCATGACCACCCTACAACA
CAAGAACGTCGTAAGCCTACTCGG--------TATGTGACCAAGATGCAGTTCATTTACCTATA-TTTTTTTGTCAG---
-ATATAGAATCACACTTATGGCAAATGTTAACATGCTCCCTCTTACCCCCTCTTTTTACATGTGAGGTAAGAAGATAAGA
GTTAATTAAACCACTAATTAATAAGATCAATGACTAAGATCTATTATACACTCTTATCTCTTGTGTGAAAAGAGTATGTT
TTTTATCAACAAATTATGCAC----CGATAGAGTAACGGTTAAATCGTACAGAAATTTTATCTGGATGACGTTGGCTCCA
AGAGGGTGGCATTTCAAATGTTATTGTTGTAGTTTTAGTTGTGTTGACTATGGCAGTTCCTTCAGAGAGCGACATAACAT
TTTCGGGGAGGATGACAATTTTGAGCCTTGAACCCAGAAAATGCAAAGCTGTTCTAAAGAAACGGCCACCCTCCACAATA
AAATGCCATCGAAACGTTTGCAAATGCCATCCCTCCCAGCGAATGTTTGCCAGCGAAGGGGATTCTAAACGTACTATAGG
AACATTGACGGTTGATTCTCTGCAGGATACAGCTTCGGAAATGGTTATTTTCATCTGGTGTACAGCTACATGCCCAACCG
CAGCTTGGACAAACGCCTCTTCCGCGAGCCCCGCGGGACAGGCTTGACCTGGCCGCTCCGCTACAGCATGGTCAACGACG
TCGCCCGGGCGCTCTACCACCTGCACGTCACCAACGTTCCCCACGGGTCGATCAAGGCGTCGAACATCTTGCTCGAGCAA
GACTTCGCCGCCAGGCTCCACGGGCACTTTGGCTACCAACCCGACCAGAGCAACACGCCCCGCGGTTCACTGGAGGCGGA
CATGCTGCAATTCGGTGTGCTGATATTGCAGGTCGTATGTGGGCCCCAGGGGCGGAGCCAGGCTAACACGGCGCCCTGGG
CCTGCTTCATCGCTACAGTGTTCAACTGGGTTCAACAGTCCAAAATCGCTATAGTCAACGAAGAAATAAATCTTCACGGC
GGCCTGGGTCCTGCCTCCCACGGCCGGGGATCACCGACTGAACTGGTGGACTGGGTTTGGACACTTCACGGGGAAAGTCG
CTTCCTCGAGGCGGTCGACCCAGCTGCGCGGGGGGACGACTTCAACTCTGCTCAGGCGACCAAGCTTCTTCTCATCGCCC
TCTCGTGCACATACCCGGACCCAGCGGCACGGCCGACTATCTATGAGGTGCGCAGGATCTTATCAGACGAAGATCCACTG
CCAGATGTTCCTCCATCAAAACCCACCTGAGACACCATTCATACTCCCTCCATTCCAAACACAGC--CGTAGGTCTGTAC
TTATAGTTTTACGTTGGTTCTAAGGCTGTTGTTTGGTTGAGTTGTAGATTCTGAAAAAGTTGTTGTGAGCTGTGAGAAAG
GTGTTGTGAACTTTCAGGTGTCGAAAAGTTGCAAGCTGTTTGACTTAAACAAACTATGATACTAAATTTAGCTGTCAATT
ATGTAATGCCCATGGTGCCTGAGTCTGAGTGAATATGTTTATATGCTAATTG----------------------------
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>chr2A_1
GCCAGAGAAGCTGCTTTGGATGCTCCTCGCCTTGCCCGTGCCTGCCGACGAGCGCGCTCCTGCAGCGACCCAACACGGCT
GGCCGCCCGTGCAGCGGCCGGAGAAGGATGCCGTGATCATGGATCCCTTCTCGCCCTGCTCATGGGCGTCCTGGGTGGGA
CCTAAGGAGCTTGACTACGAACGGCTTCAAGTAGCAACCAACAACTTCCACATGAAATCTCGGATGCGCAAGCCAGGTC-
------------GCCAGTGGGTGGTGTACAAAGGTACCAAATTTGTGGCCGACGACGGCTTGCCCGCCATTGTGGTCATC
AAAACGTTCCACCAGATCATCAGCCCGGAGCGGAGGGAGTGTATGCTCGACGATCTCAGCCGCATGACCACCCTACAACA
CAAGAACGTCGTCAGTCTGCTAGGTACGTGTATATGTGACCTAGCTACATTTCATCTACCTATA-TTTCATATAGGAGTA
TATACAGAATCACAATTATATGTCCGCACTTGATTAAGAATAATCTAATAGTTT--------------------------
--------------------------------------------------------------------------TATCTT
TTATGCAAACAAATTATGTACCGAACGATAGAGTCACGGTTAAACCATATGAATATTGAC--------------------
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------GACGGTTGATGCTCTGCAGGGTACAGCTTCGGAAATGGCCGCTTTCACCTGGTGTACAGCTACATGCCCAACCA
CAGCTTGGACAAACGCCTCTTCCGCGAGCCCCGCGGGACAGGCTTGATCTGGCGGCTTCGCTACAGCATCGTCAACGACG
TCGCCCGGGCGCTCTACCACCTGCACGTCACCAACGTTCCCCACGGGTCGATCAAGGTGTCCAACGTCATGCTCGAGCAA
GACTTCGGCGCCCGGCTCCACGGGCACTTCGGCTACCAGCCCGACCAGAGCAACACGCCCCGAGGTTCGCTGGAGGTGGA
CATGCTGGAATTCGGTGTGCTGATATTGCAGGTCGTATGTGGGCCCCAGGGGCGGAGCCAGGCTAACACCGCGCCCTGGG
CCTGCTTCATCGCCACAGTGTTCAACTGGGTTCAACAGTGCAAAATCGCTACAGTCAACGAAGAAATAAATCTTCACGGC
------------------------CGGGGATCGCCGGCTGAACTGGTGGACTGGGTTTGGACGCTTCAAGGGGAAAGTCG
CCTGCTCGAGGCGGTCGACCCAGCAGCGCGGGGCGACGACTTCAACTCTGCTCAGGCGACCAAGCTTCTACTCGTCGCCC
TCTCGTGCACATACCCGGACCCAGCGGCGCGGCTGACTATCTATGAGGTCCGCAGGATCTTATCGGACCAAGCTCCACTG
CCAGAGGTTCCTCCATCCAAACCCACCTGAGACATCATTCATACTCCCTCCATTCCAAACACAGC--CTTAGGCCCGTAA
TGGTAGTTTTACGTTGGTTCTAAGGATGTTGTTTGGTTGAGCTGTAGATTTTGAAAAAGCTGCTGTGAGCTGTGAGAAAT
CTGTTGTGAACTTTCAGGTGTCGAAAAGCTGGAAACTGTTTGACTTAAACAAACTATGGTACTAGATTTGGCTGCCAATT
ATGTAATGCCCATGGTGCCTGAGTCTGAGTGAATATGTTTATATGCTAATTGATCATAAAGCAATGATATGTACATTGGT
AGGCATTGAACAACCATTTTGCAAGAAAAATTATGACAAATTTGACCGACCATTTATTCCCTGTTTGAAGAAAAAAA--G
TGAAATAATG-CAGTCCATTTGCAAATATACGTACTACTTTACTACAGTAGAAATTTATGCATACACATAC---------
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>SNPs
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---------------------------------------------------------------------------S----
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----------------------------------------------------------------S----S----------
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----------------------S-------S-------------------------------------------------
-------------------------------------------------------------------------S------
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---SS---------------------------------------------------------------------------
----------S-------------------------------------------S-------------------------
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----------------------------------------------------------------------------S---
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--------------------------------------S-----------------------------------------
--------------------------------S--------------S--------------------------------
----S-------------------------------------------------S---------S---------------
--------------------------------------------------------S--------SS-------------
--------------------------------------S-----------------------------------------
--------------S-----S------------------------------------------------------SS---
------------------------------------------------------------S-------------------
---S--S-----------------------------S--S------------S---S---------S-------S--SS-
----------S--------------------S---------------------S----S------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_935
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------------------------------------CAGCGAATGTTTGCCAGCC-------------------------
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>reverse_2484
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---TGAAAACTGCTCGCTTTGCC---------------------------------------------------------
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