Multiple sequence alignment - TraesCS2D01G411100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G411100 chr2D 100.000 3482 0 0 1 3482 526114959 526118440 0.000000e+00 6431.0
1 TraesCS2D01G411100 chr2D 94.524 347 16 3 1204 1547 389337446 389337100 1.840000e-147 532.0
2 TraesCS2D01G411100 chr2D 72.433 896 175 56 1608 2473 526124414 526125267 1.630000e-53 220.0
3 TraesCS2D01G411100 chr2A 93.569 1415 76 11 2076 3482 670671062 670669655 0.000000e+00 2095.0
4 TraesCS2D01G411100 chr2A 94.094 491 24 4 718 1206 670672037 670671550 0.000000e+00 741.0
5 TraesCS2D01G411100 chr2A 95.484 465 16 2 1555 2015 670671554 670671091 0.000000e+00 737.0
6 TraesCS2D01G411100 chr2A 86.190 601 58 14 1 581 670676958 670676363 8.200000e-176 627.0
7 TraesCS2D01G411100 chr2A 87.055 309 34 6 203 507 420682602 420682908 9.250000e-91 344.0
8 TraesCS2D01G411100 chr2A 87.179 273 32 3 237 507 242437851 242438122 1.210000e-79 307.0
9 TraesCS2D01G411100 chr2A 72.747 899 178 57 1608 2476 670666204 670665343 1.250000e-59 241.0
10 TraesCS2D01G411100 chr2A 94.444 108 3 1 586 690 670672140 670672033 2.780000e-36 163.0
11 TraesCS2D01G411100 chr2B 93.475 1410 66 16 2076 3482 621261447 621260061 0.000000e+00 2071.0
12 TraesCS2D01G411100 chr2B 93.944 611 28 7 587 1194 621262548 621261944 0.000000e+00 915.0
13 TraesCS2D01G411100 chr2B 94.375 480 20 5 1555 2034 621261931 621261459 0.000000e+00 730.0
14 TraesCS2D01G411100 chr2B 83.333 402 40 13 9 385 621288933 621288534 2.570000e-91 346.0
15 TraesCS2D01G411100 chr2B 72.160 898 177 60 1608 2476 621219403 621218550 4.560000e-49 206.0
16 TraesCS2D01G411100 chr6D 94.524 347 16 3 1204 1547 453134475 453134821 1.840000e-147 532.0
17 TraesCS2D01G411100 chr6D 94.737 38 2 0 1907 1944 276456311 276456274 3.750000e-05 60.2
18 TraesCS2D01G411100 chr4D 94.524 347 16 3 1204 1547 4739530 4739876 1.840000e-147 532.0
19 TraesCS2D01G411100 chr4D 94.253 348 16 4 1203 1547 67180808 67180462 2.380000e-146 529.0
20 TraesCS2D01G411100 chr3D 94.524 347 16 3 1204 1547 609689335 609689681 1.840000e-147 532.0
21 TraesCS2D01G411100 chr1D 94.524 347 16 3 1204 1547 470005262 470005608 1.840000e-147 532.0
22 TraesCS2D01G411100 chr1D 86.452 310 39 3 203 510 229321280 229320972 1.550000e-88 337.0
23 TraesCS2D01G411100 chr1D 97.368 38 1 0 1907 1944 300718729 300718692 8.070000e-07 65.8
24 TraesCS2D01G411100 chr5D 94.017 351 17 4 1200 1547 130528255 130528604 2.380000e-146 529.0
25 TraesCS2D01G411100 chr5D 94.017 351 18 3 1203 1550 209554562 209554212 2.380000e-146 529.0
26 TraesCS2D01G411100 chr1A 94.253 348 17 3 1203 1547 147500059 147500406 2.380000e-146 529.0
27 TraesCS2D01G411100 chr3A 86.319 307 39 3 203 507 560917191 560917496 7.200000e-87 331.0
28 TraesCS2D01G411100 chr3A 95.122 41 2 0 1904 1944 711203530 711203570 8.070000e-07 65.8
29 TraesCS2D01G411100 chr7D 84.790 309 41 6 204 509 64181064 64180759 4.370000e-79 305.0
30 TraesCS2D01G411100 chr7A 85.235 298 40 4 205 499 55018182 55017886 1.570000e-78 303.0
31 TraesCS2D01G411100 chr5B 84.740 308 42 5 203 507 489306267 489306572 1.570000e-78 303.0
32 TraesCS2D01G411100 chr5B 93.023 43 3 0 1902 1944 96765017 96764975 2.900000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G411100 chr2D 526114959 526118440 3481 False 6431.000000 6431 100.000000 1 3482 1 chr2D.!!$F1 3481
1 TraesCS2D01G411100 chr2D 526124414 526125267 853 False 220.000000 220 72.433000 1608 2473 1 chr2D.!!$F2 865
2 TraesCS2D01G411100 chr2A 670665343 670672140 6797 True 795.400000 2095 90.067600 586 3482 5 chr2A.!!$R2 2896
3 TraesCS2D01G411100 chr2A 670676363 670676958 595 True 627.000000 627 86.190000 1 581 1 chr2A.!!$R1 580
4 TraesCS2D01G411100 chr2B 621260061 621262548 2487 True 1238.666667 2071 93.931333 587 3482 3 chr2B.!!$R3 2895
5 TraesCS2D01G411100 chr2B 621218550 621219403 853 True 206.000000 206 72.160000 1608 2476 1 chr2B.!!$R1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 561 0.667993 ACACGCATGGAAAGTGTTGG 59.332 50.0 0.0 0.0 45.6 3.77 F
1355 1385 0.036010 CCAATCCAGAACTCGCCTGT 60.036 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1570 0.114168 ACTCTGCAGTCTGAGAGGGT 59.886 55.0 22.53 13.54 40.16 4.34 R
2766 2814 0.675633 CAAGTTTCAGCACCCCCAAG 59.324 55.0 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.650371 GAAAATGTTCTAAAATTGAAAAGGTGC 57.350 29.630 0.00 0.00 0.00 5.01
29 30 6.137794 TGTTCTAAAATTGAAAAGGTGCGA 57.862 33.333 0.00 0.00 0.00 5.10
34 35 8.293114 TCTAAAATTGAAAAGGTGCGAATTTC 57.707 30.769 0.00 0.00 34.45 2.17
36 37 4.599047 ATTGAAAAGGTGCGAATTTCCA 57.401 36.364 0.00 0.00 33.23 3.53
37 38 4.392921 TTGAAAAGGTGCGAATTTCCAA 57.607 36.364 0.00 0.00 33.23 3.53
38 39 3.712187 TGAAAAGGTGCGAATTTCCAAC 58.288 40.909 0.00 0.00 33.23 3.77
43 44 0.898326 GTGCGAATTTCCAACCCCCT 60.898 55.000 0.00 0.00 0.00 4.79
141 158 8.909708 TGCACTTTTCTTATACAATTGCATAC 57.090 30.769 5.05 0.00 32.73 2.39
200 217 9.750125 AAAAATGACTCCAACTTCATAAAACTC 57.250 29.630 0.00 0.00 31.99 3.01
203 220 5.926542 TGACTCCAACTTCATAAAACTCGAG 59.073 40.000 11.84 11.84 0.00 4.04
217 234 1.208293 ACTCGAGGGCCTCTTTGATTC 59.792 52.381 29.81 3.42 0.00 2.52
231 248 7.646314 CCTCTTTGATTCGCATGATTCTAAAT 58.354 34.615 0.00 0.00 0.00 1.40
244 261 7.280876 GCATGATTCTAAATATGCGGGAATAGA 59.719 37.037 0.00 0.00 36.89 1.98
245 262 9.166173 CATGATTCTAAATATGCGGGAATAGAA 57.834 33.333 0.00 0.00 34.84 2.10
280 297 5.708877 TTTGAATGTCATGCTCATGTCAA 57.291 34.783 12.30 10.30 39.51 3.18
286 303 4.445453 TGTCATGCTCATGTCAATCCTAC 58.555 43.478 9.41 0.00 39.72 3.18
305 322 5.894393 TCCTACAGGATTTTGGTTTGTTTGA 59.106 36.000 0.00 0.00 39.78 2.69
306 323 6.553100 TCCTACAGGATTTTGGTTTGTTTGAT 59.447 34.615 0.00 0.00 39.78 2.57
307 324 7.070571 TCCTACAGGATTTTGGTTTGTTTGATT 59.929 33.333 0.00 0.00 39.78 2.57
308 325 6.923928 ACAGGATTTTGGTTTGTTTGATTG 57.076 33.333 0.00 0.00 0.00 2.67
313 330 6.017275 GGATTTTGGTTTGTTTGATTGCATCA 60.017 34.615 0.00 0.00 37.55 3.07
377 396 5.615289 CTGGAAATCCTATGGGAAGTAGTG 58.385 45.833 0.22 0.00 45.78 2.74
387 406 8.047310 TCCTATGGGAAGTAGTGAAAAGAAATC 58.953 37.037 0.00 0.00 38.93 2.17
388 407 8.049721 CCTATGGGAAGTAGTGAAAAGAAATCT 58.950 37.037 0.00 0.00 33.58 2.40
486 506 8.797350 AATCCTTCAAAATTCCCATGAAAATC 57.203 30.769 0.00 0.00 33.08 2.17
537 557 2.627791 TCCACACGCATGGAAAGTG 58.372 52.632 5.78 0.00 46.08 3.16
540 560 1.600164 CCACACGCATGGAAAGTGTTG 60.600 52.381 0.00 0.00 45.60 3.33
541 561 0.667993 ACACGCATGGAAAGTGTTGG 59.332 50.000 0.00 0.00 45.60 3.77
544 564 1.608590 ACGCATGGAAAGTGTTGGAAG 59.391 47.619 0.00 0.00 0.00 3.46
550 570 1.338020 GGAAAGTGTTGGAAGTGCCTG 59.662 52.381 0.00 0.00 37.63 4.85
569 589 3.891400 CATGGGCCGAATGGTGCG 61.891 66.667 8.80 0.00 37.67 5.34
581 601 3.619483 CGAATGGTGCGACAATTAGGTTA 59.381 43.478 0.00 0.00 0.00 2.85
582 602 4.493545 CGAATGGTGCGACAATTAGGTTAC 60.494 45.833 0.00 0.00 0.00 2.50
583 603 2.702261 TGGTGCGACAATTAGGTTACC 58.298 47.619 0.00 0.00 0.00 2.85
584 604 2.303600 TGGTGCGACAATTAGGTTACCT 59.696 45.455 9.57 9.57 37.71 3.08
585 605 3.514706 TGGTGCGACAATTAGGTTACCTA 59.485 43.478 7.09 7.09 34.61 3.08
586 606 4.162698 TGGTGCGACAATTAGGTTACCTAT 59.837 41.667 12.36 0.00 35.87 2.57
587 607 5.121105 GGTGCGACAATTAGGTTACCTATT 58.879 41.667 12.36 5.98 35.87 1.73
588 608 5.007332 GGTGCGACAATTAGGTTACCTATTG 59.993 44.000 21.09 21.09 35.87 1.90
589 609 5.813672 GTGCGACAATTAGGTTACCTATTGA 59.186 40.000 25.60 10.73 35.87 2.57
590 610 5.813672 TGCGACAATTAGGTTACCTATTGAC 59.186 40.000 25.60 21.14 35.87 3.18
591 611 6.047231 GCGACAATTAGGTTACCTATTGACT 58.953 40.000 25.60 13.64 35.87 3.41
597 617 9.099454 CAATTAGGTTACCTATTGACTCAAGAC 57.901 37.037 12.36 0.00 35.87 3.01
603 623 1.207089 CTATTGACTCAAGACGGGCCA 59.793 52.381 4.39 0.00 0.00 5.36
757 780 1.444553 GCTCCGTCTCAGTTGACCG 60.445 63.158 0.00 0.00 33.70 4.79
759 782 2.432628 CCGTCTCAGTTGACCGCC 60.433 66.667 0.00 0.00 33.70 6.13
767 790 3.276846 GTTGACCGCCGTGCAAGT 61.277 61.111 0.00 0.00 0.00 3.16
772 795 1.966493 GACCGCCGTGCAAGTATGTG 61.966 60.000 0.00 0.00 0.00 3.21
874 899 4.937015 GCTCCCACGTTTATAACACCTAAA 59.063 41.667 0.00 0.00 0.00 1.85
907 932 1.883084 CACCCCGAATCGCACTAGC 60.883 63.158 0.00 0.00 37.42 3.42
966 991 1.678101 CAAACCTAGCTAGCCCATTGC 59.322 52.381 15.74 0.00 41.71 3.56
1011 1036 4.222588 GCTAGATCATCAATGGCTAGTCCT 59.777 45.833 15.65 0.00 36.49 3.85
1200 1230 3.254166 ACGGTAAGTCTCACGTACATGTT 59.746 43.478 2.30 0.00 35.27 2.71
1201 1231 3.850273 CGGTAAGTCTCACGTACATGTTC 59.150 47.826 2.30 0.00 35.27 3.18
1202 1232 4.614306 CGGTAAGTCTCACGTACATGTTCA 60.614 45.833 2.30 0.00 35.27 3.18
1203 1233 4.857588 GGTAAGTCTCACGTACATGTTCAG 59.142 45.833 2.30 0.00 35.27 3.02
1204 1234 4.848562 AAGTCTCACGTACATGTTCAGA 57.151 40.909 2.30 0.00 0.00 3.27
1205 1235 4.427096 AGTCTCACGTACATGTTCAGAG 57.573 45.455 2.30 9.42 0.00 3.35
1206 1236 3.191581 AGTCTCACGTACATGTTCAGAGG 59.808 47.826 2.30 0.00 0.00 3.69
1207 1237 2.492088 TCTCACGTACATGTTCAGAGGG 59.508 50.000 2.30 0.00 0.00 4.30
1208 1238 2.231478 CTCACGTACATGTTCAGAGGGT 59.769 50.000 2.30 0.00 0.00 4.34
1209 1239 2.029380 TCACGTACATGTTCAGAGGGTG 60.029 50.000 2.30 2.42 0.00 4.61
1210 1240 2.029380 CACGTACATGTTCAGAGGGTGA 60.029 50.000 2.30 0.00 0.00 4.02
1211 1241 2.832129 ACGTACATGTTCAGAGGGTGAT 59.168 45.455 2.30 0.00 34.17 3.06
1212 1242 3.260884 ACGTACATGTTCAGAGGGTGATT 59.739 43.478 2.30 0.00 34.17 2.57
1213 1243 3.618594 CGTACATGTTCAGAGGGTGATTG 59.381 47.826 2.30 0.00 34.17 2.67
1214 1244 4.620567 CGTACATGTTCAGAGGGTGATTGA 60.621 45.833 2.30 0.00 34.17 2.57
1215 1245 4.371624 ACATGTTCAGAGGGTGATTGAA 57.628 40.909 0.00 0.00 34.17 2.69
1216 1246 4.927049 ACATGTTCAGAGGGTGATTGAAT 58.073 39.130 0.00 0.00 34.17 2.57
1217 1247 6.065976 ACATGTTCAGAGGGTGATTGAATA 57.934 37.500 0.00 0.00 34.17 1.75
1218 1248 5.882557 ACATGTTCAGAGGGTGATTGAATAC 59.117 40.000 0.00 0.00 34.17 1.89
1219 1249 4.503910 TGTTCAGAGGGTGATTGAATACG 58.496 43.478 0.00 0.00 34.17 3.06
1220 1250 4.020573 TGTTCAGAGGGTGATTGAATACGT 60.021 41.667 0.00 0.00 34.17 3.57
1221 1251 4.819105 TCAGAGGGTGATTGAATACGTT 57.181 40.909 0.00 0.00 0.00 3.99
1222 1252 5.160607 TCAGAGGGTGATTGAATACGTTT 57.839 39.130 0.00 0.00 0.00 3.60
1223 1253 5.556915 TCAGAGGGTGATTGAATACGTTTT 58.443 37.500 0.00 0.00 0.00 2.43
1224 1254 6.703319 TCAGAGGGTGATTGAATACGTTTTA 58.297 36.000 0.00 0.00 0.00 1.52
1225 1255 6.816640 TCAGAGGGTGATTGAATACGTTTTAG 59.183 38.462 0.00 0.00 0.00 1.85
1226 1256 6.594159 CAGAGGGTGATTGAATACGTTTTAGT 59.406 38.462 0.00 0.00 0.00 2.24
1227 1257 6.594159 AGAGGGTGATTGAATACGTTTTAGTG 59.406 38.462 0.00 0.00 0.00 2.74
1228 1258 6.235664 AGGGTGATTGAATACGTTTTAGTGT 58.764 36.000 0.00 0.00 0.00 3.55
1229 1259 6.370718 AGGGTGATTGAATACGTTTTAGTGTC 59.629 38.462 0.00 0.00 0.00 3.67
1230 1260 6.148150 GGGTGATTGAATACGTTTTAGTGTCA 59.852 38.462 0.00 0.00 0.00 3.58
1231 1261 7.148306 GGGTGATTGAATACGTTTTAGTGTCAT 60.148 37.037 0.00 0.00 0.00 3.06
1232 1262 7.692291 GGTGATTGAATACGTTTTAGTGTCATG 59.308 37.037 0.00 0.00 0.00 3.07
1233 1263 8.440059 GTGATTGAATACGTTTTAGTGTCATGA 58.560 33.333 0.00 0.00 0.00 3.07
1234 1264 8.440059 TGATTGAATACGTTTTAGTGTCATGAC 58.560 33.333 19.27 19.27 0.00 3.06
1235 1265 7.956420 TTGAATACGTTTTAGTGTCATGACT 57.044 32.000 25.55 9.97 0.00 3.41
1236 1266 9.647797 ATTGAATACGTTTTAGTGTCATGACTA 57.352 29.630 25.55 8.94 0.00 2.59
1237 1267 9.478768 TTGAATACGTTTTAGTGTCATGACTAA 57.521 29.630 25.55 14.28 36.78 2.24
1238 1268 9.478768 TGAATACGTTTTAGTGTCATGACTAAA 57.521 29.630 25.55 18.79 43.50 1.85
1239 1269 9.953825 GAATACGTTTTAGTGTCATGACTAAAG 57.046 33.333 25.55 13.76 44.99 1.85
1240 1270 9.485206 AATACGTTTTAGTGTCATGACTAAAGT 57.515 29.630 25.55 17.67 44.99 2.66
1242 1272 8.516811 ACGTTTTAGTGTCATGACTAAAGTAG 57.483 34.615 25.55 17.08 44.99 2.57
1243 1273 8.139989 ACGTTTTAGTGTCATGACTAAAGTAGT 58.860 33.333 25.55 17.56 44.99 2.73
1244 1274 8.425491 CGTTTTAGTGTCATGACTAAAGTAGTG 58.575 37.037 25.55 6.36 44.99 2.74
1245 1275 8.709646 GTTTTAGTGTCATGACTAAAGTAGTGG 58.290 37.037 25.55 0.00 44.99 4.00
1246 1276 5.407407 AGTGTCATGACTAAAGTAGTGGG 57.593 43.478 25.55 0.00 39.59 4.61
1247 1277 4.223032 AGTGTCATGACTAAAGTAGTGGGG 59.777 45.833 25.55 0.00 39.59 4.96
1248 1278 3.055385 TGTCATGACTAAAGTAGTGGGGC 60.055 47.826 25.55 0.00 39.59 5.80
1249 1279 3.197983 GTCATGACTAAAGTAGTGGGGCT 59.802 47.826 18.83 0.00 39.59 5.19
1250 1280 4.404715 GTCATGACTAAAGTAGTGGGGCTA 59.595 45.833 18.83 0.00 39.59 3.93
1251 1281 5.027460 TCATGACTAAAGTAGTGGGGCTAA 58.973 41.667 0.00 0.00 39.59 3.09
1252 1282 5.486063 TCATGACTAAAGTAGTGGGGCTAAA 59.514 40.000 0.00 0.00 39.59 1.85
1253 1283 5.829062 TGACTAAAGTAGTGGGGCTAAAA 57.171 39.130 0.00 0.00 39.59 1.52
1254 1284 5.554070 TGACTAAAGTAGTGGGGCTAAAAC 58.446 41.667 0.00 0.00 39.59 2.43
1255 1285 5.308759 TGACTAAAGTAGTGGGGCTAAAACT 59.691 40.000 0.00 0.00 39.59 2.66
1256 1286 6.183361 TGACTAAAGTAGTGGGGCTAAAACTT 60.183 38.462 0.00 0.00 39.59 2.66
1257 1287 6.002082 ACTAAAGTAGTGGGGCTAAAACTTG 58.998 40.000 0.00 0.00 37.69 3.16
1258 1288 2.791655 AGTAGTGGGGCTAAAACTTGC 58.208 47.619 0.00 0.00 0.00 4.01
1259 1289 2.375509 AGTAGTGGGGCTAAAACTTGCT 59.624 45.455 0.00 0.00 0.00 3.91
1260 1290 3.585732 AGTAGTGGGGCTAAAACTTGCTA 59.414 43.478 0.00 0.00 0.00 3.49
1261 1291 3.073274 AGTGGGGCTAAAACTTGCTAG 57.927 47.619 0.00 0.00 0.00 3.42
1262 1292 1.472878 GTGGGGCTAAAACTTGCTAGC 59.527 52.381 8.10 8.10 39.89 3.42
1267 1297 3.766676 GCTAAAACTTGCTAGCCTTCC 57.233 47.619 13.29 0.00 35.50 3.46
1268 1298 2.423892 GCTAAAACTTGCTAGCCTTCCC 59.576 50.000 13.29 0.00 35.50 3.97
1269 1299 1.924731 AAAACTTGCTAGCCTTCCCC 58.075 50.000 13.29 0.00 0.00 4.81
1270 1300 0.777446 AAACTTGCTAGCCTTCCCCA 59.223 50.000 13.29 0.00 0.00 4.96
1271 1301 1.002857 AACTTGCTAGCCTTCCCCAT 58.997 50.000 13.29 0.00 0.00 4.00
1272 1302 0.257039 ACTTGCTAGCCTTCCCCATG 59.743 55.000 13.29 0.00 0.00 3.66
1273 1303 1.076777 TTGCTAGCCTTCCCCATGC 60.077 57.895 13.29 0.00 0.00 4.06
1274 1304 1.574526 TTGCTAGCCTTCCCCATGCT 61.575 55.000 13.29 0.00 39.10 3.79
1275 1305 1.228510 GCTAGCCTTCCCCATGCTT 59.771 57.895 2.29 0.00 36.57 3.91
1276 1306 1.105759 GCTAGCCTTCCCCATGCTTG 61.106 60.000 2.29 0.00 36.57 4.01
1277 1307 0.466922 CTAGCCTTCCCCATGCTTGG 60.467 60.000 11.68 11.68 43.23 3.61
1278 1308 0.918799 TAGCCTTCCCCATGCTTGGA 60.919 55.000 19.85 0.00 46.92 3.53
1279 1309 1.075748 GCCTTCCCCATGCTTGGAT 60.076 57.895 19.85 0.00 46.92 3.41
1280 1310 1.111715 GCCTTCCCCATGCTTGGATC 61.112 60.000 19.85 0.00 46.92 3.36
1281 1311 0.468771 CCTTCCCCATGCTTGGATCC 60.469 60.000 19.85 4.20 46.92 3.36
1282 1312 0.259647 CTTCCCCATGCTTGGATCCA 59.740 55.000 19.85 11.44 46.92 3.41
1283 1313 0.709397 TTCCCCATGCTTGGATCCAA 59.291 50.000 25.53 25.53 46.92 3.53
1284 1314 0.709397 TCCCCATGCTTGGATCCAAA 59.291 50.000 26.87 14.63 46.92 3.28
1285 1315 1.291637 TCCCCATGCTTGGATCCAAAT 59.708 47.619 26.87 16.27 46.92 2.32
1286 1316 2.517553 TCCCCATGCTTGGATCCAAATA 59.482 45.455 26.87 18.63 46.92 1.40
1287 1317 2.629617 CCCCATGCTTGGATCCAAATAC 59.370 50.000 26.87 19.00 46.92 1.89
1288 1318 3.569491 CCCATGCTTGGATCCAAATACT 58.431 45.455 26.87 10.16 46.92 2.12
1289 1319 4.447616 CCCCATGCTTGGATCCAAATACTA 60.448 45.833 26.87 12.31 46.92 1.82
1290 1320 5.139727 CCCATGCTTGGATCCAAATACTAA 58.860 41.667 26.87 10.11 46.92 2.24
1291 1321 5.598005 CCCATGCTTGGATCCAAATACTAAA 59.402 40.000 26.87 8.81 46.92 1.85
1292 1322 6.098124 CCCATGCTTGGATCCAAATACTAAAA 59.902 38.462 26.87 2.67 46.92 1.52
1293 1323 7.364585 CCCATGCTTGGATCCAAATACTAAAAA 60.365 37.037 26.87 1.90 46.92 1.94
1294 1324 7.707893 CCATGCTTGGATCCAAATACTAAAAAG 59.292 37.037 26.87 12.80 46.92 2.27
1295 1325 8.469200 CATGCTTGGATCCAAATACTAAAAAGA 58.531 33.333 26.87 1.15 35.33 2.52
1296 1326 7.826690 TGCTTGGATCCAAATACTAAAAAGAC 58.173 34.615 26.87 8.83 35.33 3.01
1297 1327 7.669722 TGCTTGGATCCAAATACTAAAAAGACT 59.330 33.333 26.87 0.00 35.33 3.24
1298 1328 9.174166 GCTTGGATCCAAATACTAAAAAGACTA 57.826 33.333 26.87 0.00 35.33 2.59
1329 1359 9.866655 AAGTTAATGAGCATTTATTATCCTCCA 57.133 29.630 0.52 0.00 32.50 3.86
1330 1360 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
1333 1363 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
1334 1364 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
1335 1365 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
1336 1366 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
1337 1367 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
1338 1368 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
1339 1369 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
1340 1370 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
1341 1371 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
1342 1372 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
1343 1373 0.704076 CCTCCAAACCCTCCAATCCA 59.296 55.000 0.00 0.00 0.00 3.41
1344 1374 1.341383 CCTCCAAACCCTCCAATCCAG 60.341 57.143 0.00 0.00 0.00 3.86
1345 1375 1.635487 CTCCAAACCCTCCAATCCAGA 59.365 52.381 0.00 0.00 0.00 3.86
1346 1376 2.041620 CTCCAAACCCTCCAATCCAGAA 59.958 50.000 0.00 0.00 0.00 3.02
1347 1377 2.171003 CCAAACCCTCCAATCCAGAAC 58.829 52.381 0.00 0.00 0.00 3.01
1348 1378 2.225117 CCAAACCCTCCAATCCAGAACT 60.225 50.000 0.00 0.00 0.00 3.01
1349 1379 3.084786 CAAACCCTCCAATCCAGAACTC 58.915 50.000 0.00 0.00 0.00 3.01
1350 1380 0.905357 ACCCTCCAATCCAGAACTCG 59.095 55.000 0.00 0.00 0.00 4.18
1351 1381 0.462759 CCCTCCAATCCAGAACTCGC 60.463 60.000 0.00 0.00 0.00 5.03
1352 1382 0.462759 CCTCCAATCCAGAACTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
1353 1383 0.539051 CTCCAATCCAGAACTCGCCT 59.461 55.000 0.00 0.00 0.00 5.52
1354 1384 0.250234 TCCAATCCAGAACTCGCCTG 59.750 55.000 0.00 0.00 0.00 4.85
1355 1385 0.036010 CCAATCCAGAACTCGCCTGT 60.036 55.000 0.00 0.00 0.00 4.00
1356 1386 1.081892 CAATCCAGAACTCGCCTGTG 58.918 55.000 0.00 0.00 0.00 3.66
1357 1387 0.687354 AATCCAGAACTCGCCTGTGT 59.313 50.000 0.00 0.00 0.00 3.72
1358 1388 0.687354 ATCCAGAACTCGCCTGTGTT 59.313 50.000 0.00 0.00 34.68 3.32
1359 1389 1.334160 TCCAGAACTCGCCTGTGTTA 58.666 50.000 0.00 0.00 32.29 2.41
1360 1390 1.689813 TCCAGAACTCGCCTGTGTTAA 59.310 47.619 0.00 0.00 32.29 2.01
1361 1391 2.103432 TCCAGAACTCGCCTGTGTTAAA 59.897 45.455 0.00 0.00 32.29 1.52
1362 1392 2.480419 CCAGAACTCGCCTGTGTTAAAG 59.520 50.000 0.00 0.00 32.29 1.85
1363 1393 2.480419 CAGAACTCGCCTGTGTTAAAGG 59.520 50.000 0.00 0.00 37.91 3.11
1364 1394 2.367567 AGAACTCGCCTGTGTTAAAGGA 59.632 45.455 0.00 0.00 36.91 3.36
1365 1395 2.457366 ACTCGCCTGTGTTAAAGGAG 57.543 50.000 0.00 0.00 36.91 3.69
1366 1396 1.968493 ACTCGCCTGTGTTAAAGGAGA 59.032 47.619 0.00 0.00 40.79 3.71
1367 1397 2.367567 ACTCGCCTGTGTTAAAGGAGAA 59.632 45.455 0.63 0.00 42.19 2.87
1368 1398 2.996621 CTCGCCTGTGTTAAAGGAGAAG 59.003 50.000 0.63 0.00 42.19 2.85
1369 1399 2.631062 TCGCCTGTGTTAAAGGAGAAGA 59.369 45.455 0.00 0.00 40.21 2.87
1370 1400 3.070446 TCGCCTGTGTTAAAGGAGAAGAA 59.930 43.478 0.00 0.00 40.21 2.52
1371 1401 4.003648 CGCCTGTGTTAAAGGAGAAGAAT 58.996 43.478 0.00 0.00 36.79 2.40
1372 1402 4.455877 CGCCTGTGTTAAAGGAGAAGAATT 59.544 41.667 0.00 0.00 36.79 2.17
1373 1403 5.642063 CGCCTGTGTTAAAGGAGAAGAATTA 59.358 40.000 0.00 0.00 36.79 1.40
1374 1404 6.148811 CGCCTGTGTTAAAGGAGAAGAATTAA 59.851 38.462 0.00 0.00 36.79 1.40
1375 1405 7.308348 CGCCTGTGTTAAAGGAGAAGAATTAAA 60.308 37.037 0.00 0.00 36.79 1.52
1376 1406 8.523658 GCCTGTGTTAAAGGAGAAGAATTAAAT 58.476 33.333 0.00 0.00 36.91 1.40
1387 1417 9.722317 AGGAGAAGAATTAAATAAGGAGAGAGA 57.278 33.333 0.00 0.00 0.00 3.10
1388 1418 9.981114 GGAGAAGAATTAAATAAGGAGAGAGAG 57.019 37.037 0.00 0.00 0.00 3.20
1389 1419 9.981114 GAGAAGAATTAAATAAGGAGAGAGAGG 57.019 37.037 0.00 0.00 0.00 3.69
1390 1420 9.722317 AGAAGAATTAAATAAGGAGAGAGAGGA 57.278 33.333 0.00 0.00 0.00 3.71
1391 1421 9.758651 GAAGAATTAAATAAGGAGAGAGAGGAC 57.241 37.037 0.00 0.00 0.00 3.85
1392 1422 9.500701 AAGAATTAAATAAGGAGAGAGAGGACT 57.499 33.333 0.00 0.00 0.00 3.85
1397 1427 7.849322 AAATAAGGAGAGAGAGGACTAATCC 57.151 40.000 0.00 0.00 46.69 3.01
1412 1442 6.296803 GGACTAATCCACATTTTAGTAGGGG 58.703 44.000 0.00 0.00 45.47 4.79
1413 1443 6.126565 GGACTAATCCACATTTTAGTAGGGGT 60.127 42.308 0.00 0.00 45.47 4.95
1414 1444 7.071572 GGACTAATCCACATTTTAGTAGGGGTA 59.928 40.741 0.00 0.00 45.47 3.69
1415 1445 7.799081 ACTAATCCACATTTTAGTAGGGGTAC 58.201 38.462 0.00 0.00 36.99 3.34
1416 1446 7.147426 ACTAATCCACATTTTAGTAGGGGTACC 60.147 40.741 2.17 2.17 41.38 3.34
1457 1487 6.275494 GTCTCAAGACTAGTTTTAGCCTCT 57.725 41.667 0.00 0.00 41.65 3.69
1458 1488 6.327154 GTCTCAAGACTAGTTTTAGCCTCTC 58.673 44.000 0.00 0.00 41.65 3.20
1459 1489 6.152154 GTCTCAAGACTAGTTTTAGCCTCTCT 59.848 42.308 0.00 0.00 41.65 3.10
1460 1490 6.722129 TCTCAAGACTAGTTTTAGCCTCTCTT 59.278 38.462 0.00 0.00 0.00 2.85
1461 1491 7.233757 TCTCAAGACTAGTTTTAGCCTCTCTTT 59.766 37.037 0.00 0.00 0.00 2.52
1462 1492 8.418597 TCAAGACTAGTTTTAGCCTCTCTTTA 57.581 34.615 0.00 0.00 0.00 1.85
1463 1493 8.524487 TCAAGACTAGTTTTAGCCTCTCTTTAG 58.476 37.037 0.00 0.00 0.00 1.85
1464 1494 8.308207 CAAGACTAGTTTTAGCCTCTCTTTAGT 58.692 37.037 0.00 0.00 0.00 2.24
1465 1495 8.058667 AGACTAGTTTTAGCCTCTCTTTAGTC 57.941 38.462 0.00 0.00 36.42 2.59
1466 1496 7.670559 AGACTAGTTTTAGCCTCTCTTTAGTCA 59.329 37.037 0.00 0.00 37.83 3.41
1467 1497 7.832769 ACTAGTTTTAGCCTCTCTTTAGTCAG 58.167 38.462 0.00 0.00 0.00 3.51
1468 1498 6.043854 AGTTTTAGCCTCTCTTTAGTCAGG 57.956 41.667 0.00 0.00 0.00 3.86
1469 1499 5.046231 AGTTTTAGCCTCTCTTTAGTCAGGG 60.046 44.000 0.00 0.00 0.00 4.45
1470 1500 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
1471 1501 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
1472 1502 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
1473 1503 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
1474 1504 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
1475 1505 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
1476 1506 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
1477 1507 2.303022 CTCTTTAGTCAGGGGTGCTTGA 59.697 50.000 0.00 0.00 0.00 3.02
1478 1508 2.708861 TCTTTAGTCAGGGGTGCTTGAA 59.291 45.455 0.00 0.00 0.00 2.69
1479 1509 3.137544 TCTTTAGTCAGGGGTGCTTGAAA 59.862 43.478 0.00 0.00 0.00 2.69
1480 1510 2.561478 TAGTCAGGGGTGCTTGAAAC 57.439 50.000 0.00 0.00 0.00 2.78
1481 1511 0.846693 AGTCAGGGGTGCTTGAAACT 59.153 50.000 0.00 0.00 0.00 2.66
1482 1512 1.215423 AGTCAGGGGTGCTTGAAACTT 59.785 47.619 0.00 0.00 0.00 2.66
1483 1513 2.031870 GTCAGGGGTGCTTGAAACTTT 58.968 47.619 0.00 0.00 0.00 2.66
1484 1514 3.117663 AGTCAGGGGTGCTTGAAACTTTA 60.118 43.478 0.00 0.00 0.00 1.85
1485 1515 3.253432 GTCAGGGGTGCTTGAAACTTTAG 59.747 47.826 0.00 0.00 0.00 1.85
1486 1516 2.029918 CAGGGGTGCTTGAAACTTTAGC 60.030 50.000 0.00 0.00 35.50 3.09
1487 1517 1.272490 GGGGTGCTTGAAACTTTAGCC 59.728 52.381 0.00 0.00 34.03 3.93
1488 1518 2.239400 GGGTGCTTGAAACTTTAGCCT 58.761 47.619 0.00 0.00 34.03 4.58
1489 1519 2.229062 GGGTGCTTGAAACTTTAGCCTC 59.771 50.000 0.00 0.00 34.03 4.70
1490 1520 3.149981 GGTGCTTGAAACTTTAGCCTCT 58.850 45.455 0.00 0.00 34.03 3.69
1491 1521 3.570125 GGTGCTTGAAACTTTAGCCTCTT 59.430 43.478 0.00 0.00 34.03 2.85
1492 1522 4.760204 GGTGCTTGAAACTTTAGCCTCTTA 59.240 41.667 0.00 0.00 34.03 2.10
1493 1523 5.240844 GGTGCTTGAAACTTTAGCCTCTTAA 59.759 40.000 0.00 0.00 34.03 1.85
1494 1524 6.238925 GGTGCTTGAAACTTTAGCCTCTTAAA 60.239 38.462 0.00 0.00 34.03 1.52
1495 1525 6.858478 GTGCTTGAAACTTTAGCCTCTTAAAG 59.142 38.462 4.46 4.46 43.21 1.85
1496 1526 6.770785 TGCTTGAAACTTTAGCCTCTTAAAGA 59.229 34.615 11.30 0.00 41.17 2.52
1497 1527 7.078851 GCTTGAAACTTTAGCCTCTTAAAGAC 58.921 38.462 11.30 4.74 41.17 3.01
1498 1528 7.255139 GCTTGAAACTTTAGCCTCTTAAAGACA 60.255 37.037 11.30 6.62 41.17 3.41
1499 1529 7.492352 TGAAACTTTAGCCTCTTAAAGACAC 57.508 36.000 11.30 4.23 41.17 3.67
1500 1530 7.280356 TGAAACTTTAGCCTCTTAAAGACACT 58.720 34.615 11.30 0.00 41.17 3.55
1501 1531 8.426489 TGAAACTTTAGCCTCTTAAAGACACTA 58.574 33.333 11.30 0.00 41.17 2.74
1502 1532 9.438228 GAAACTTTAGCCTCTTAAAGACACTAT 57.562 33.333 11.30 0.00 41.17 2.12
1503 1533 9.794719 AAACTTTAGCCTCTTAAAGACACTATT 57.205 29.630 11.30 0.00 41.17 1.73
1504 1534 9.794719 AACTTTAGCCTCTTAAAGACACTATTT 57.205 29.630 11.30 0.00 41.17 1.40
1505 1535 9.794719 ACTTTAGCCTCTTAAAGACACTATTTT 57.205 29.630 11.30 0.00 41.17 1.82
1510 1540 9.438228 AGCCTCTTAAAGACACTATTTTTAGTC 57.562 33.333 0.00 0.00 0.00 2.59
1511 1541 9.216117 GCCTCTTAAAGACACTATTTTTAGTCA 57.784 33.333 0.00 0.00 33.56 3.41
1530 1560 9.720769 TTTAGTCAGACTAAAATAAGTCCCTTG 57.279 33.333 26.93 0.00 44.84 3.61
1531 1561 6.712276 AGTCAGACTAAAATAAGTCCCTTGG 58.288 40.000 0.00 0.00 45.86 3.61
1532 1562 6.500751 AGTCAGACTAAAATAAGTCCCTTGGA 59.499 38.462 0.00 0.00 45.86 3.53
1533 1563 7.182930 AGTCAGACTAAAATAAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.86 3.41
1534 1564 7.829706 GTCAGACTAAAATAAGTCCCTTGGATT 59.170 37.037 0.00 0.00 45.86 3.01
1535 1565 8.047310 TCAGACTAAAATAAGTCCCTTGGATTC 58.953 37.037 0.54 0.00 45.86 2.52
1536 1566 7.829211 CAGACTAAAATAAGTCCCTTGGATTCA 59.171 37.037 0.54 0.00 45.86 2.57
1537 1567 8.390921 AGACTAAAATAAGTCCCTTGGATTCAA 58.609 33.333 0.54 0.00 45.86 2.69
1538 1568 8.678199 GACTAAAATAAGTCCCTTGGATTCAAG 58.322 37.037 6.78 6.78 41.56 3.02
1539 1569 5.921962 AAATAAGTCCCTTGGATTCAAGC 57.078 39.130 8.38 0.00 46.69 4.01
1540 1570 2.978156 AAGTCCCTTGGATTCAAGCA 57.022 45.000 8.38 0.00 46.69 3.91
1541 1571 2.206576 AGTCCCTTGGATTCAAGCAC 57.793 50.000 8.38 7.05 46.69 4.40
1542 1572 1.177401 GTCCCTTGGATTCAAGCACC 58.823 55.000 8.38 0.00 46.69 5.01
1543 1573 0.039618 TCCCTTGGATTCAAGCACCC 59.960 55.000 8.38 0.00 46.69 4.61
1544 1574 0.040204 CCCTTGGATTCAAGCACCCT 59.960 55.000 8.38 0.00 46.69 4.34
1545 1575 1.467920 CCTTGGATTCAAGCACCCTC 58.532 55.000 8.38 0.00 46.69 4.30
1546 1576 1.005215 CCTTGGATTCAAGCACCCTCT 59.995 52.381 8.38 0.00 46.69 3.69
1547 1577 2.363683 CTTGGATTCAAGCACCCTCTC 58.636 52.381 0.00 0.00 43.10 3.20
1548 1578 1.361204 TGGATTCAAGCACCCTCTCA 58.639 50.000 0.00 0.00 0.00 3.27
1549 1579 1.280133 TGGATTCAAGCACCCTCTCAG 59.720 52.381 0.00 0.00 0.00 3.35
1550 1580 1.556911 GGATTCAAGCACCCTCTCAGA 59.443 52.381 0.00 0.00 0.00 3.27
1551 1581 2.626840 GATTCAAGCACCCTCTCAGAC 58.373 52.381 0.00 0.00 0.00 3.51
1552 1582 1.722034 TTCAAGCACCCTCTCAGACT 58.278 50.000 0.00 0.00 0.00 3.24
1553 1583 0.972134 TCAAGCACCCTCTCAGACTG 59.028 55.000 0.00 0.00 0.00 3.51
1563 1593 3.568007 CCCTCTCAGACTGCAGAGTATAC 59.432 52.174 23.35 0.00 35.29 1.47
1576 1606 5.098893 GCAGAGTATACACACTTGTCAGAG 58.901 45.833 5.50 0.00 37.15 3.35
1605 1635 1.165270 CTCTTTTTCCGTGGGCGAAT 58.835 50.000 0.00 0.00 41.33 3.34
1842 1882 2.221299 TAACAAGGCCTGCTCCGGT 61.221 57.895 5.69 0.00 0.00 5.28
1992 2032 1.147824 CGGGCAGCTCAAGATCCAT 59.852 57.895 0.00 0.00 0.00 3.41
2009 2049 3.340034 TCCATTACGCGAGGTGAAAAAT 58.660 40.909 15.93 0.00 0.00 1.82
2019 2059 4.031028 CGAGGTGAAAAATGCATTCGATC 58.969 43.478 13.38 11.59 31.34 3.69
2021 2064 5.240713 AGGTGAAAAATGCATTCGATCTC 57.759 39.130 13.38 11.40 0.00 2.75
2038 2081 4.436718 CGATCTCGATCTGATAATCGCAGT 60.437 45.833 5.47 0.00 46.28 4.40
2039 2082 4.411993 TCTCGATCTGATAATCGCAGTC 57.588 45.455 1.57 0.00 46.28 3.51
2040 2083 3.815401 TCTCGATCTGATAATCGCAGTCA 59.185 43.478 1.57 0.00 46.28 3.41
2042 2085 2.660715 CGATCTGATAATCGCAGTCAGC 59.339 50.000 0.00 0.00 41.71 4.26
2043 2086 3.611293 CGATCTGATAATCGCAGTCAGCT 60.611 47.826 0.00 0.00 41.71 4.24
2045 2088 3.711086 TCTGATAATCGCAGTCAGCTTC 58.289 45.455 0.00 0.00 42.61 3.86
2047 2090 3.190079 TGATAATCGCAGTCAGCTTCAC 58.810 45.455 0.00 0.00 42.61 3.18
2048 2091 1.629013 TAATCGCAGTCAGCTTCACG 58.371 50.000 0.00 0.00 42.61 4.35
2049 2092 0.319900 AATCGCAGTCAGCTTCACGT 60.320 50.000 0.00 0.00 42.61 4.49
2050 2093 0.734253 ATCGCAGTCAGCTTCACGTC 60.734 55.000 0.00 0.00 42.61 4.34
2051 2094 2.710971 CGCAGTCAGCTTCACGTCG 61.711 63.158 0.00 0.00 42.61 5.12
2052 2095 1.371758 GCAGTCAGCTTCACGTCGA 60.372 57.895 0.00 0.00 41.15 4.20
2053 2096 1.609840 GCAGTCAGCTTCACGTCGAC 61.610 60.000 5.18 5.18 41.15 4.20
2054 2097 1.004277 CAGTCAGCTTCACGTCGACC 61.004 60.000 10.58 0.00 0.00 4.79
2062 2105 0.598942 TTCACGTCGACCCACATGTG 60.599 55.000 19.31 19.31 0.00 3.21
2063 2106 1.300620 CACGTCGACCCACATGTGT 60.301 57.895 23.79 6.89 0.00 3.72
2066 2109 0.878523 CGTCGACCCACATGTGTGTT 60.879 55.000 23.79 7.88 44.21 3.32
2067 2110 1.603425 CGTCGACCCACATGTGTGTTA 60.603 52.381 23.79 8.94 44.21 2.41
2068 2111 2.485903 GTCGACCCACATGTGTGTTAA 58.514 47.619 23.79 8.61 44.21 2.01
2070 2113 4.247258 GTCGACCCACATGTGTGTTAATA 58.753 43.478 23.79 3.87 44.21 0.98
2074 2117 3.756434 ACCCACATGTGTGTTAATACTGC 59.244 43.478 23.79 0.00 44.21 4.40
2484 2530 0.613853 TGAACTACGCCAGCTAGGGT 60.614 55.000 7.10 7.10 38.09 4.34
2629 2676 6.540551 AGAAGAGGAAGAAAGTCAAGTGTTTC 59.459 38.462 0.00 0.00 33.59 2.78
2697 2745 5.765182 CAGTTGTTTCCCTAGTGATGTCTTT 59.235 40.000 0.00 0.00 0.00 2.52
2706 2754 5.123027 CCCTAGTGATGTCTTTTTCTTGAGC 59.877 44.000 0.00 0.00 0.00 4.26
2766 2814 1.094785 TTTATCGCTCAGGCTTTGGC 58.905 50.000 0.00 0.00 36.09 4.52
2791 2839 3.562609 GGGGGTGCTGAAACTTGGTATAA 60.563 47.826 0.00 0.00 0.00 0.98
2796 2844 6.349363 GGGTGCTGAAACTTGGTATAAGAAAG 60.349 42.308 0.00 0.00 0.00 2.62
2887 2936 0.742990 GGGATCATGAACGTTCGCCA 60.743 55.000 22.48 7.22 0.00 5.69
2954 3006 7.694093 ACTTGGATTCTGAACTAGAGGAAAAT 58.306 34.615 0.00 0.00 36.61 1.82
2955 3007 8.826765 ACTTGGATTCTGAACTAGAGGAAAATA 58.173 33.333 0.00 0.00 36.61 1.40
2956 3008 9.672673 CTTGGATTCTGAACTAGAGGAAAATAA 57.327 33.333 0.00 0.00 36.61 1.40
3020 3072 6.463995 AAAAATCCACTTGTGCAGAAGTAA 57.536 33.333 26.87 18.62 34.29 2.24
3069 3122 3.181461 GCATGACTAGGCACATAACCTCT 60.181 47.826 0.00 0.00 38.81 3.69
3204 3257 4.664150 TTGTTTCAAATCCTCAACCACC 57.336 40.909 0.00 0.00 0.00 4.61
3245 3298 3.379372 CCAGCCACTCTTATGTCCATTTG 59.621 47.826 0.00 0.00 0.00 2.32
3265 3318 1.530323 GGATGCGTTTGGTAGGTTGT 58.470 50.000 0.00 0.00 0.00 3.32
3284 3337 6.500400 AGGTTGTATCCTTTTTGGGCTATTTT 59.500 34.615 0.00 0.00 33.52 1.82
3290 3343 9.131791 GTATCCTTTTTGGGCTATTTTCATCTA 57.868 33.333 0.00 0.00 36.20 1.98
3293 3346 7.069826 TCCTTTTTGGGCTATTTTCATCTATGG 59.930 37.037 0.00 0.00 36.20 2.74
3299 3352 6.183361 TGGGCTATTTTCATCTATGGCTAAGT 60.183 38.462 0.00 0.00 0.00 2.24
3303 3356 7.229506 GCTATTTTCATCTATGGCTAAGTTGGT 59.770 37.037 0.00 0.00 0.00 3.67
3326 3379 7.081976 GGTTATGGTTGAGTGAATACAAACAC 58.918 38.462 0.00 0.00 44.52 3.32
3328 3381 5.493133 TGGTTGAGTGAATACAAACACAC 57.507 39.130 0.00 0.00 38.52 3.82
3365 3421 3.001634 CACACATAGTTTGGCTATCTGCG 59.998 47.826 0.00 0.00 44.05 5.18
3374 3433 1.709147 GGCTATCTGCGTTGCACCAG 61.709 60.000 0.00 0.00 44.05 4.00
3378 3437 0.534877 ATCTGCGTTGCACCAGTGAA 60.535 50.000 0.99 0.00 33.79 3.18
3399 3458 9.651913 AGTGAACAATTTTATGACAAGTGTTTT 57.348 25.926 0.62 0.00 41.26 2.43
3413 3472 2.831526 AGTGTTTTGTTGGCAGGAGTTT 59.168 40.909 0.00 0.00 0.00 2.66
3431 3490 6.015434 AGGAGTTTTGGATTATGGTTGTCAAC 60.015 38.462 7.20 7.20 0.00 3.18
3432 3491 6.239176 GGAGTTTTGGATTATGGTTGTCAACA 60.239 38.462 17.29 4.42 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.762407 AAAAAGGGGGTTGGAAATTCG 57.238 42.857 0.00 0.00 0.00 3.34
162 179 6.252233 TGGAGTCATTTTTATGTCCCATCAA 58.748 36.000 0.00 0.00 0.00 2.57
200 217 1.432270 GCGAATCAAAGAGGCCCTCG 61.432 60.000 4.80 0.00 35.36 4.63
203 220 0.383231 CATGCGAATCAAAGAGGCCC 59.617 55.000 0.00 0.00 0.00 5.80
257 274 5.907866 TGACATGAGCATGACATTCAAAT 57.092 34.783 16.70 0.00 41.20 2.32
260 277 4.337274 GGATTGACATGAGCATGACATTCA 59.663 41.667 24.43 14.34 41.52 2.57
264 281 3.639672 AGGATTGACATGAGCATGACA 57.360 42.857 16.70 13.51 41.20 3.58
286 303 5.296283 TGCAATCAAACAAACCAAAATCCTG 59.704 36.000 0.00 0.00 0.00 3.86
306 323 9.590451 GAATTCTTCATTTTTCCTATGATGCAA 57.410 29.630 0.00 0.00 32.43 4.08
307 324 8.974238 AGAATTCTTCATTTTTCCTATGATGCA 58.026 29.630 0.88 0.00 32.43 3.96
308 325 9.813446 AAGAATTCTTCATTTTTCCTATGATGC 57.187 29.630 15.11 0.00 32.43 3.91
348 366 1.808945 CCATAGGATTTCCAGCATCGC 59.191 52.381 0.00 0.00 38.89 4.58
349 367 2.038952 TCCCATAGGATTTCCAGCATCG 59.961 50.000 0.00 0.00 37.19 3.84
467 487 7.743749 TCAAAGGATTTTCATGGGAATTTTGA 58.256 30.769 12.62 12.62 35.03 2.69
521 541 1.600164 CCAACACTTTCCATGCGTGTG 60.600 52.381 4.96 0.00 40.68 3.82
522 542 0.667993 CCAACACTTTCCATGCGTGT 59.332 50.000 4.96 0.00 43.14 4.49
537 557 1.588082 CATGCCAGGCACTTCCAAC 59.412 57.895 19.10 0.00 43.04 3.77
540 560 2.757099 CCCATGCCAGGCACTTCC 60.757 66.667 19.10 0.00 43.04 3.46
569 589 9.099454 CTTGAGTCAATAGGTAACCTAATTGTC 57.901 37.037 5.91 0.00 39.77 3.18
581 601 1.207329 GCCCGTCTTGAGTCAATAGGT 59.793 52.381 5.91 0.00 0.00 3.08
582 602 1.473434 GGCCCGTCTTGAGTCAATAGG 60.473 57.143 5.91 9.79 0.00 2.57
583 603 1.207089 TGGCCCGTCTTGAGTCAATAG 59.793 52.381 5.91 0.00 0.00 1.73
584 604 1.271856 TGGCCCGTCTTGAGTCAATA 58.728 50.000 5.91 0.00 0.00 1.90
585 605 0.620556 ATGGCCCGTCTTGAGTCAAT 59.379 50.000 5.91 0.00 0.00 2.57
586 606 0.400213 AATGGCCCGTCTTGAGTCAA 59.600 50.000 5.25 5.25 0.00 3.18
587 607 0.400213 AAATGGCCCGTCTTGAGTCA 59.600 50.000 0.00 0.00 0.00 3.41
588 608 0.804989 CAAATGGCCCGTCTTGAGTC 59.195 55.000 0.00 0.00 0.00 3.36
589 609 0.400213 TCAAATGGCCCGTCTTGAGT 59.600 50.000 0.00 0.00 0.00 3.41
590 610 1.089920 CTCAAATGGCCCGTCTTGAG 58.910 55.000 14.91 14.91 38.99 3.02
591 611 0.400213 ACTCAAATGGCCCGTCTTGA 59.600 50.000 0.00 2.96 0.00 3.02
597 617 0.958091 TCAAACACTCAAATGGCCCG 59.042 50.000 0.00 0.00 0.00 6.13
603 623 2.357637 CACGTGGGTCAAACACTCAAAT 59.642 45.455 7.95 0.00 37.17 2.32
718 741 2.016393 GCCGATCCTGTGATGACGGA 62.016 60.000 0.00 0.00 39.51 4.69
757 780 1.154225 GCACACATACTTGCACGGC 60.154 57.895 0.00 0.00 38.68 5.68
759 782 1.509787 GCGCACACATACTTGCACG 60.510 57.895 0.30 0.00 38.76 5.34
772 795 1.019805 GTTTAGGGAGAGGTGCGCAC 61.020 60.000 32.15 32.15 0.00 5.34
874 899 3.860470 TCGGGGTGGTATATATAGGAGGT 59.140 47.826 0.00 0.00 0.00 3.85
907 932 2.594303 TCGGTGTTGCTTGCAGGG 60.594 61.111 0.00 0.00 0.00 4.45
1011 1036 2.735883 GCCAACAGCAATGTGCCA 59.264 55.556 0.00 0.00 46.52 4.92
1190 1215 2.244695 TCACCCTCTGAACATGTACGT 58.755 47.619 0.00 0.00 0.00 3.57
1200 1230 4.819105 AACGTATTCAATCACCCTCTGA 57.181 40.909 0.00 0.00 0.00 3.27
1201 1231 5.880054 AAAACGTATTCAATCACCCTCTG 57.120 39.130 0.00 0.00 0.00 3.35
1202 1232 6.594159 CACTAAAACGTATTCAATCACCCTCT 59.406 38.462 0.00 0.00 0.00 3.69
1203 1233 6.370718 ACACTAAAACGTATTCAATCACCCTC 59.629 38.462 0.00 0.00 0.00 4.30
1204 1234 6.235664 ACACTAAAACGTATTCAATCACCCT 58.764 36.000 0.00 0.00 0.00 4.34
1205 1235 6.148150 TGACACTAAAACGTATTCAATCACCC 59.852 38.462 0.00 0.00 0.00 4.61
1206 1236 7.124347 TGACACTAAAACGTATTCAATCACC 57.876 36.000 0.00 0.00 0.00 4.02
1207 1237 8.440059 TCATGACACTAAAACGTATTCAATCAC 58.560 33.333 0.00 0.00 0.00 3.06
1208 1238 8.440059 GTCATGACACTAAAACGTATTCAATCA 58.560 33.333 21.07 0.00 0.00 2.57
1209 1239 8.656849 AGTCATGACACTAAAACGTATTCAATC 58.343 33.333 27.02 0.00 0.00 2.67
1210 1240 8.547967 AGTCATGACACTAAAACGTATTCAAT 57.452 30.769 27.02 0.00 0.00 2.57
1211 1241 7.956420 AGTCATGACACTAAAACGTATTCAA 57.044 32.000 27.02 0.00 0.00 2.69
1212 1242 9.478768 TTTAGTCATGACACTAAAACGTATTCA 57.521 29.630 27.02 0.00 43.03 2.57
1213 1243 9.953825 CTTTAGTCATGACACTAAAACGTATTC 57.046 33.333 27.02 0.00 44.51 1.75
1214 1244 9.485206 ACTTTAGTCATGACACTAAAACGTATT 57.515 29.630 27.02 4.73 44.51 1.89
1216 1246 9.616634 CTACTTTAGTCATGACACTAAAACGTA 57.383 33.333 27.02 18.28 44.51 3.57
1217 1247 8.139989 ACTACTTTAGTCATGACACTAAAACGT 58.860 33.333 27.02 18.17 44.51 3.99
1218 1248 8.425491 CACTACTTTAGTCATGACACTAAAACG 58.575 37.037 27.02 14.27 44.51 3.60
1219 1249 8.709646 CCACTACTTTAGTCATGACACTAAAAC 58.290 37.037 27.02 0.00 44.51 2.43
1220 1250 7.876068 CCCACTACTTTAGTCATGACACTAAAA 59.124 37.037 27.02 18.25 44.51 1.52
1221 1251 7.383687 CCCACTACTTTAGTCATGACACTAAA 58.616 38.462 27.02 20.36 43.52 1.85
1222 1252 6.070995 CCCCACTACTTTAGTCATGACACTAA 60.071 42.308 27.02 14.88 36.76 2.24
1223 1253 5.421056 CCCCACTACTTTAGTCATGACACTA 59.579 44.000 27.02 9.54 36.76 2.74
1224 1254 4.223032 CCCCACTACTTTAGTCATGACACT 59.777 45.833 27.02 10.59 36.76 3.55
1225 1255 4.504858 CCCCACTACTTTAGTCATGACAC 58.495 47.826 27.02 2.19 36.76 3.67
1226 1256 3.055385 GCCCCACTACTTTAGTCATGACA 60.055 47.826 27.02 10.87 36.76 3.58
1227 1257 3.197983 AGCCCCACTACTTTAGTCATGAC 59.802 47.826 18.47 18.47 36.76 3.06
1228 1258 3.450904 AGCCCCACTACTTTAGTCATGA 58.549 45.455 0.00 0.00 36.76 3.07
1229 1259 3.914426 AGCCCCACTACTTTAGTCATG 57.086 47.619 0.00 0.00 36.76 3.07
1230 1260 6.012771 AGTTTTAGCCCCACTACTTTAGTCAT 60.013 38.462 0.00 0.00 36.76 3.06
1231 1261 5.308759 AGTTTTAGCCCCACTACTTTAGTCA 59.691 40.000 0.00 0.00 36.76 3.41
1232 1262 5.802465 AGTTTTAGCCCCACTACTTTAGTC 58.198 41.667 0.00 0.00 36.76 2.59
1233 1263 5.837770 AGTTTTAGCCCCACTACTTTAGT 57.162 39.130 0.00 0.00 40.28 2.24
1234 1264 5.106277 GCAAGTTTTAGCCCCACTACTTTAG 60.106 44.000 0.00 0.00 0.00 1.85
1235 1265 4.763279 GCAAGTTTTAGCCCCACTACTTTA 59.237 41.667 0.00 0.00 0.00 1.85
1236 1266 3.572682 GCAAGTTTTAGCCCCACTACTTT 59.427 43.478 0.00 0.00 0.00 2.66
1237 1267 3.154710 GCAAGTTTTAGCCCCACTACTT 58.845 45.455 0.00 0.00 0.00 2.24
1238 1268 2.375509 AGCAAGTTTTAGCCCCACTACT 59.624 45.455 0.00 0.00 0.00 2.57
1239 1269 2.791655 AGCAAGTTTTAGCCCCACTAC 58.208 47.619 0.00 0.00 0.00 2.73
1240 1270 3.621461 GCTAGCAAGTTTTAGCCCCACTA 60.621 47.826 10.63 0.00 37.02 2.74
1241 1271 2.880167 GCTAGCAAGTTTTAGCCCCACT 60.880 50.000 10.63 0.00 37.02 4.00
1242 1272 1.472878 GCTAGCAAGTTTTAGCCCCAC 59.527 52.381 10.63 0.00 37.02 4.61
1243 1273 1.834188 GCTAGCAAGTTTTAGCCCCA 58.166 50.000 10.63 0.00 37.02 4.96
1247 1277 2.423892 GGGAAGGCTAGCAAGTTTTAGC 59.576 50.000 18.24 7.37 41.16 3.09
1248 1278 3.017442 GGGGAAGGCTAGCAAGTTTTAG 58.983 50.000 18.24 0.00 0.00 1.85
1249 1279 2.377193 TGGGGAAGGCTAGCAAGTTTTA 59.623 45.455 18.24 0.00 0.00 1.52
1250 1280 1.146982 TGGGGAAGGCTAGCAAGTTTT 59.853 47.619 18.24 2.27 0.00 2.43
1251 1281 0.777446 TGGGGAAGGCTAGCAAGTTT 59.223 50.000 18.24 4.89 0.00 2.66
1252 1282 1.002857 ATGGGGAAGGCTAGCAAGTT 58.997 50.000 18.24 6.48 0.00 2.66
1253 1283 0.257039 CATGGGGAAGGCTAGCAAGT 59.743 55.000 18.24 0.00 0.00 3.16
1254 1284 1.105759 GCATGGGGAAGGCTAGCAAG 61.106 60.000 18.24 0.00 31.20 4.01
1255 1285 1.076777 GCATGGGGAAGGCTAGCAA 60.077 57.895 18.24 0.00 31.20 3.91
1256 1286 2.002977 AGCATGGGGAAGGCTAGCA 61.003 57.895 18.24 0.00 46.08 3.49
1257 1287 2.922234 AGCATGGGGAAGGCTAGC 59.078 61.111 6.04 6.04 46.08 3.42
1269 1299 8.469200 TCTTTTTAGTATTTGGATCCAAGCATG 58.531 33.333 25.69 10.04 37.24 4.06
1270 1300 8.470002 GTCTTTTTAGTATTTGGATCCAAGCAT 58.530 33.333 25.69 19.69 37.24 3.79
1271 1301 7.669722 AGTCTTTTTAGTATTTGGATCCAAGCA 59.330 33.333 25.69 14.00 37.24 3.91
1272 1302 8.056407 AGTCTTTTTAGTATTTGGATCCAAGC 57.944 34.615 25.69 19.18 37.24 4.01
1303 1333 9.866655 TGGAGGATAATAAATGCTCATTAACTT 57.133 29.630 8.48 0.00 38.10 2.66
1304 1334 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
1307 1337 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
1308 1338 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
1309 1339 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
1310 1340 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
1311 1341 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
1312 1342 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
1313 1343 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
1314 1344 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
1315 1345 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
1316 1346 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
1317 1347 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
1318 1348 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
1319 1349 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
1320 1350 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
1321 1351 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
1322 1352 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
1323 1353 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
1324 1354 0.704076 TGGATTGGAGGGTTTGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
1325 1355 1.635487 TCTGGATTGGAGGGTTTGGAG 59.365 52.381 0.00 0.00 0.00 3.86
1326 1356 1.753903 TCTGGATTGGAGGGTTTGGA 58.246 50.000 0.00 0.00 0.00 3.53
1327 1357 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
1328 1358 3.084786 GAGTTCTGGATTGGAGGGTTTG 58.915 50.000 0.00 0.00 0.00 2.93
1329 1359 2.290323 CGAGTTCTGGATTGGAGGGTTT 60.290 50.000 0.00 0.00 0.00 3.27
1330 1360 1.279271 CGAGTTCTGGATTGGAGGGTT 59.721 52.381 0.00 0.00 0.00 4.11
1331 1361 0.905357 CGAGTTCTGGATTGGAGGGT 59.095 55.000 0.00 0.00 0.00 4.34
1332 1362 0.462759 GCGAGTTCTGGATTGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
1333 1363 0.462759 GGCGAGTTCTGGATTGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
1334 1364 0.539051 AGGCGAGTTCTGGATTGGAG 59.461 55.000 0.00 0.00 0.00 3.86
1335 1365 0.250234 CAGGCGAGTTCTGGATTGGA 59.750 55.000 0.00 0.00 0.00 3.53
1336 1366 0.036010 ACAGGCGAGTTCTGGATTGG 60.036 55.000 0.00 0.00 36.62 3.16
1337 1367 1.081892 CACAGGCGAGTTCTGGATTG 58.918 55.000 0.00 0.00 36.62 2.67
1338 1368 0.687354 ACACAGGCGAGTTCTGGATT 59.313 50.000 0.00 0.00 36.62 3.01
1339 1369 0.687354 AACACAGGCGAGTTCTGGAT 59.313 50.000 0.00 0.00 36.62 3.41
1340 1370 1.334160 TAACACAGGCGAGTTCTGGA 58.666 50.000 0.00 0.00 36.62 3.86
1341 1371 2.163818 TTAACACAGGCGAGTTCTGG 57.836 50.000 0.00 0.00 36.62 3.86
1342 1372 2.480419 CCTTTAACACAGGCGAGTTCTG 59.520 50.000 0.00 0.00 38.16 3.02
1343 1373 2.367567 TCCTTTAACACAGGCGAGTTCT 59.632 45.455 0.00 0.00 0.00 3.01
1344 1374 2.737252 CTCCTTTAACACAGGCGAGTTC 59.263 50.000 0.00 0.00 0.00 3.01
1345 1375 2.367567 TCTCCTTTAACACAGGCGAGTT 59.632 45.455 0.00 0.00 0.00 3.01
1346 1376 1.968493 TCTCCTTTAACACAGGCGAGT 59.032 47.619 0.00 0.00 0.00 4.18
1347 1377 2.743636 TCTCCTTTAACACAGGCGAG 57.256 50.000 0.00 0.00 0.00 5.03
1348 1378 2.631062 TCTTCTCCTTTAACACAGGCGA 59.369 45.455 0.00 0.00 0.00 5.54
1349 1379 3.040147 TCTTCTCCTTTAACACAGGCG 57.960 47.619 0.00 0.00 0.00 5.52
1350 1380 5.966742 AATTCTTCTCCTTTAACACAGGC 57.033 39.130 0.00 0.00 0.00 4.85
1361 1391 9.722317 TCTCTCTCCTTATTTAATTCTTCTCCT 57.278 33.333 0.00 0.00 0.00 3.69
1362 1392 9.981114 CTCTCTCTCCTTATTTAATTCTTCTCC 57.019 37.037 0.00 0.00 0.00 3.71
1363 1393 9.981114 CCTCTCTCTCCTTATTTAATTCTTCTC 57.019 37.037 0.00 0.00 0.00 2.87
1364 1394 9.722317 TCCTCTCTCTCCTTATTTAATTCTTCT 57.278 33.333 0.00 0.00 0.00 2.85
1365 1395 9.758651 GTCCTCTCTCTCCTTATTTAATTCTTC 57.241 37.037 0.00 0.00 0.00 2.87
1366 1396 9.500701 AGTCCTCTCTCTCCTTATTTAATTCTT 57.499 33.333 0.00 0.00 0.00 2.52
1371 1401 9.369672 GGATTAGTCCTCTCTCTCCTTATTTAA 57.630 37.037 0.00 0.00 41.60 1.52
1372 1402 8.511969 TGGATTAGTCCTCTCTCTCCTTATTTA 58.488 37.037 5.79 0.00 45.32 1.40
1373 1403 7.289084 GTGGATTAGTCCTCTCTCTCCTTATTT 59.711 40.741 5.79 0.00 45.32 1.40
1374 1404 6.780522 GTGGATTAGTCCTCTCTCTCCTTATT 59.219 42.308 5.79 0.00 45.32 1.40
1375 1405 6.126038 TGTGGATTAGTCCTCTCTCTCCTTAT 60.126 42.308 5.79 0.00 45.32 1.73
1376 1406 5.193930 TGTGGATTAGTCCTCTCTCTCCTTA 59.806 44.000 5.79 0.00 45.32 2.69
1377 1407 4.017037 TGTGGATTAGTCCTCTCTCTCCTT 60.017 45.833 5.79 0.00 45.32 3.36
1378 1408 3.529734 TGTGGATTAGTCCTCTCTCTCCT 59.470 47.826 5.79 0.00 45.32 3.69
1379 1409 3.904717 TGTGGATTAGTCCTCTCTCTCC 58.095 50.000 5.79 0.00 45.32 3.71
1380 1410 6.478512 AAATGTGGATTAGTCCTCTCTCTC 57.521 41.667 5.79 0.00 45.32 3.20
1381 1411 6.882768 AAAATGTGGATTAGTCCTCTCTCT 57.117 37.500 5.79 0.00 45.32 3.10
1382 1412 7.787028 ACTAAAATGTGGATTAGTCCTCTCTC 58.213 38.462 5.79 0.00 45.32 3.20
1383 1413 7.741554 ACTAAAATGTGGATTAGTCCTCTCT 57.258 36.000 5.79 0.00 45.32 3.10
1384 1414 8.145122 CCTACTAAAATGTGGATTAGTCCTCTC 58.855 40.741 5.79 0.00 45.32 3.20
1385 1415 7.071321 CCCTACTAAAATGTGGATTAGTCCTCT 59.929 40.741 5.79 0.00 45.32 3.69
1386 1416 7.217906 CCCTACTAAAATGTGGATTAGTCCTC 58.782 42.308 5.79 2.58 45.32 3.71
1387 1417 6.101296 CCCCTACTAAAATGTGGATTAGTCCT 59.899 42.308 5.79 0.00 45.32 3.85
1388 1418 6.126565 ACCCCTACTAAAATGTGGATTAGTCC 60.127 42.308 0.00 0.00 40.53 3.85
1389 1419 6.896883 ACCCCTACTAAAATGTGGATTAGTC 58.103 40.000 1.78 0.00 40.53 2.59
1390 1420 6.903340 ACCCCTACTAAAATGTGGATTAGT 57.097 37.500 3.93 3.93 43.05 2.24
1391 1421 7.072076 AGGTACCCCTACTAAAATGTGGATTAG 59.928 40.741 8.74 0.00 40.19 1.73
1392 1422 6.910290 AGGTACCCCTACTAAAATGTGGATTA 59.090 38.462 8.74 0.00 40.19 1.75
1393 1423 5.734634 AGGTACCCCTACTAAAATGTGGATT 59.265 40.000 8.74 0.00 40.19 3.01
1394 1424 5.294473 AGGTACCCCTACTAAAATGTGGAT 58.706 41.667 8.74 0.00 40.19 3.41
1395 1425 4.702196 AGGTACCCCTACTAAAATGTGGA 58.298 43.478 8.74 0.00 40.19 4.02
1396 1426 4.720273 AGAGGTACCCCTACTAAAATGTGG 59.280 45.833 8.74 0.00 42.86 4.17
1397 1427 5.424252 TCAGAGGTACCCCTACTAAAATGTG 59.576 44.000 8.74 0.00 42.86 3.21
1398 1428 5.424573 GTCAGAGGTACCCCTACTAAAATGT 59.575 44.000 8.74 0.00 42.86 2.71
1399 1429 5.661759 AGTCAGAGGTACCCCTACTAAAATG 59.338 44.000 8.74 0.00 42.86 2.32
1400 1430 5.851418 AGTCAGAGGTACCCCTACTAAAAT 58.149 41.667 8.74 0.00 42.86 1.82
1401 1431 5.280998 AGTCAGAGGTACCCCTACTAAAA 57.719 43.478 8.74 0.00 42.86 1.52
1402 1432 4.961440 AGTCAGAGGTACCCCTACTAAA 57.039 45.455 8.74 0.00 42.86 1.85
1403 1433 6.407320 TTTAGTCAGAGGTACCCCTACTAA 57.593 41.667 8.74 14.08 42.86 2.24
1404 1434 6.407320 TTTTAGTCAGAGGTACCCCTACTA 57.593 41.667 8.74 8.90 42.86 1.82
1405 1435 4.961440 TTTAGTCAGAGGTACCCCTACT 57.039 45.455 8.74 9.89 42.86 2.57
1434 1464 6.152154 AGAGAGGCTAAAACTAGTCTTGAGAC 59.848 42.308 0.00 2.93 45.08 3.36
1435 1465 6.249951 AGAGAGGCTAAAACTAGTCTTGAGA 58.750 40.000 0.00 0.00 31.19 3.27
1436 1466 6.524101 AGAGAGGCTAAAACTAGTCTTGAG 57.476 41.667 0.00 0.00 31.19 3.02
1437 1467 6.919775 AAGAGAGGCTAAAACTAGTCTTGA 57.080 37.500 0.00 0.00 31.19 3.02
1438 1468 8.308207 ACTAAAGAGAGGCTAAAACTAGTCTTG 58.692 37.037 0.00 0.00 31.19 3.02
1439 1469 8.425237 ACTAAAGAGAGGCTAAAACTAGTCTT 57.575 34.615 0.00 0.00 31.19 3.01
1440 1470 7.670559 TGACTAAAGAGAGGCTAAAACTAGTCT 59.329 37.037 18.57 0.00 34.21 3.24
1441 1471 7.828712 TGACTAAAGAGAGGCTAAAACTAGTC 58.171 38.462 14.17 14.17 0.00 2.59
1442 1472 7.093684 CCTGACTAAAGAGAGGCTAAAACTAGT 60.094 40.741 0.00 0.00 0.00 2.57
1443 1473 7.262048 CCTGACTAAAGAGAGGCTAAAACTAG 58.738 42.308 0.00 0.00 0.00 2.57
1444 1474 6.154706 CCCTGACTAAAGAGAGGCTAAAACTA 59.845 42.308 0.00 0.00 0.00 2.24
1445 1475 5.046231 CCCTGACTAAAGAGAGGCTAAAACT 60.046 44.000 0.00 0.00 0.00 2.66
1446 1476 5.179533 CCCTGACTAAAGAGAGGCTAAAAC 58.820 45.833 0.00 0.00 0.00 2.43
1447 1477 4.225267 CCCCTGACTAAAGAGAGGCTAAAA 59.775 45.833 0.00 0.00 0.00 1.52
1448 1478 3.775316 CCCCTGACTAAAGAGAGGCTAAA 59.225 47.826 0.00 0.00 0.00 1.85
1449 1479 3.246021 ACCCCTGACTAAAGAGAGGCTAA 60.246 47.826 0.00 0.00 0.00 3.09
1450 1480 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
1451 1481 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
1452 1482 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
1453 1483 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
1454 1484 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
1455 1485 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
1456 1486 2.303022 TCAAGCACCCCTGACTAAAGAG 59.697 50.000 0.00 0.00 0.00 2.85
1457 1487 2.334977 TCAAGCACCCCTGACTAAAGA 58.665 47.619 0.00 0.00 0.00 2.52
1458 1488 2.859165 TCAAGCACCCCTGACTAAAG 57.141 50.000 0.00 0.00 0.00 1.85
1459 1489 3.117663 AGTTTCAAGCACCCCTGACTAAA 60.118 43.478 0.00 0.00 0.00 1.85
1460 1490 2.441750 AGTTTCAAGCACCCCTGACTAA 59.558 45.455 0.00 0.00 0.00 2.24
1461 1491 2.054799 AGTTTCAAGCACCCCTGACTA 58.945 47.619 0.00 0.00 0.00 2.59
1462 1492 0.846693 AGTTTCAAGCACCCCTGACT 59.153 50.000 0.00 0.00 0.00 3.41
1463 1493 1.692411 AAGTTTCAAGCACCCCTGAC 58.308 50.000 0.00 0.00 0.00 3.51
1464 1494 2.452600 AAAGTTTCAAGCACCCCTGA 57.547 45.000 0.00 0.00 0.00 3.86
1465 1495 2.029918 GCTAAAGTTTCAAGCACCCCTG 60.030 50.000 5.64 0.00 36.26 4.45
1466 1496 2.239400 GCTAAAGTTTCAAGCACCCCT 58.761 47.619 5.64 0.00 36.26 4.79
1467 1497 1.272490 GGCTAAAGTTTCAAGCACCCC 59.728 52.381 11.51 0.00 38.01 4.95
1468 1498 2.229062 GAGGCTAAAGTTTCAAGCACCC 59.771 50.000 11.51 0.00 38.01 4.61
1469 1499 3.149981 AGAGGCTAAAGTTTCAAGCACC 58.850 45.455 11.51 3.82 38.01 5.01
1470 1500 4.837896 AAGAGGCTAAAGTTTCAAGCAC 57.162 40.909 11.51 5.94 38.01 4.40
1471 1501 6.770785 TCTTTAAGAGGCTAAAGTTTCAAGCA 59.229 34.615 11.51 0.00 39.12 3.91
1472 1502 7.078851 GTCTTTAAGAGGCTAAAGTTTCAAGC 58.921 38.462 7.84 2.28 39.12 4.01
1473 1503 8.070769 GTGTCTTTAAGAGGCTAAAGTTTCAAG 58.929 37.037 7.84 0.00 39.12 3.02
1474 1504 7.773690 AGTGTCTTTAAGAGGCTAAAGTTTCAA 59.226 33.333 7.84 0.00 39.12 2.69
1475 1505 7.280356 AGTGTCTTTAAGAGGCTAAAGTTTCA 58.720 34.615 7.84 4.67 39.12 2.69
1476 1506 7.731882 AGTGTCTTTAAGAGGCTAAAGTTTC 57.268 36.000 7.84 2.73 39.12 2.78
1477 1507 9.794719 AATAGTGTCTTTAAGAGGCTAAAGTTT 57.205 29.630 7.84 0.00 39.12 2.66
1478 1508 9.794719 AAATAGTGTCTTTAAGAGGCTAAAGTT 57.205 29.630 7.84 0.00 39.12 2.66
1479 1509 9.794719 AAAATAGTGTCTTTAAGAGGCTAAAGT 57.205 29.630 7.84 0.00 39.12 2.66
1484 1514 9.438228 GACTAAAAATAGTGTCTTTAAGAGGCT 57.562 33.333 0.00 0.00 0.00 4.58
1485 1515 9.216117 TGACTAAAAATAGTGTCTTTAAGAGGC 57.784 33.333 0.00 0.00 0.00 4.70
1528 1558 1.704628 TGAGAGGGTGCTTGAATCCAA 59.295 47.619 0.00 0.00 0.00 3.53
1529 1559 1.280133 CTGAGAGGGTGCTTGAATCCA 59.720 52.381 0.00 0.00 0.00 3.41
1530 1560 1.556911 TCTGAGAGGGTGCTTGAATCC 59.443 52.381 0.00 0.00 0.00 3.01
1531 1561 2.235898 AGTCTGAGAGGGTGCTTGAATC 59.764 50.000 0.00 0.00 0.00 2.52
1532 1562 2.027377 CAGTCTGAGAGGGTGCTTGAAT 60.027 50.000 0.00 0.00 0.00 2.57
1533 1563 1.345741 CAGTCTGAGAGGGTGCTTGAA 59.654 52.381 0.00 0.00 0.00 2.69
1534 1564 0.972134 CAGTCTGAGAGGGTGCTTGA 59.028 55.000 0.00 0.00 0.00 3.02
1535 1565 0.673022 GCAGTCTGAGAGGGTGCTTG 60.673 60.000 3.32 0.00 0.00 4.01
1536 1566 1.123861 TGCAGTCTGAGAGGGTGCTT 61.124 55.000 3.32 0.00 35.11 3.91
1537 1567 1.534959 TGCAGTCTGAGAGGGTGCT 60.535 57.895 3.32 0.00 35.11 4.40
1538 1568 1.079266 CTGCAGTCTGAGAGGGTGC 60.079 63.158 5.25 4.81 34.62 5.01
1539 1569 0.531657 CTCTGCAGTCTGAGAGGGTG 59.468 60.000 14.67 0.00 39.71 4.61
1540 1570 0.114168 ACTCTGCAGTCTGAGAGGGT 59.886 55.000 22.53 13.54 40.16 4.34
1541 1571 2.136298 TACTCTGCAGTCTGAGAGGG 57.864 55.000 22.53 13.05 40.16 4.30
1542 1572 4.036262 GTGTATACTCTGCAGTCTGAGAGG 59.964 50.000 22.53 11.85 40.16 3.69
1543 1573 4.637977 TGTGTATACTCTGCAGTCTGAGAG 59.362 45.833 14.67 19.50 39.71 3.20
1544 1574 4.396478 GTGTGTATACTCTGCAGTCTGAGA 59.604 45.833 14.67 3.19 39.71 3.27
1545 1575 4.397730 AGTGTGTATACTCTGCAGTCTGAG 59.602 45.833 14.67 6.37 42.07 3.35
1546 1576 4.336280 AGTGTGTATACTCTGCAGTCTGA 58.664 43.478 14.67 0.00 33.62 3.27
1547 1577 4.710423 AGTGTGTATACTCTGCAGTCTG 57.290 45.455 14.67 8.01 33.62 3.51
1548 1578 4.524714 ACAAGTGTGTATACTCTGCAGTCT 59.475 41.667 14.67 2.22 35.72 3.24
1549 1579 4.810790 ACAAGTGTGTATACTCTGCAGTC 58.189 43.478 14.67 0.00 35.72 3.51
1550 1580 4.280929 TGACAAGTGTGTATACTCTGCAGT 59.719 41.667 14.67 0.00 38.41 4.40
1551 1581 4.809673 TGACAAGTGTGTATACTCTGCAG 58.190 43.478 7.63 7.63 38.41 4.41
1552 1582 4.522789 TCTGACAAGTGTGTATACTCTGCA 59.477 41.667 4.17 0.00 38.41 4.41
1553 1583 5.060662 TCTGACAAGTGTGTATACTCTGC 57.939 43.478 4.17 0.00 38.41 4.26
1563 1593 3.724508 AGTCTCACTCTGACAAGTGTG 57.275 47.619 13.77 12.24 45.57 3.82
1576 1606 4.448060 CCACGGAAAAAGAGTAAGTCTCAC 59.552 45.833 0.00 0.00 44.98 3.51
1884 1924 0.459237 GATCCTCCGAGGCGCATATG 60.459 60.000 10.83 0.00 34.61 1.78
1977 2017 1.262683 GCGTAATGGATCTTGAGCTGC 59.737 52.381 0.00 0.00 0.00 5.25
1992 2032 1.874231 TGCATTTTTCACCTCGCGTAA 59.126 42.857 5.77 0.00 0.00 3.18
2034 2077 1.371758 TCGACGTGAAGCTGACTGC 60.372 57.895 0.00 0.00 43.29 4.40
2038 2081 2.197605 TGGGTCGACGTGAAGCTGA 61.198 57.895 9.92 0.00 0.00 4.26
2039 2082 2.022129 GTGGGTCGACGTGAAGCTG 61.022 63.158 9.92 0.00 0.00 4.24
2040 2083 1.816863 ATGTGGGTCGACGTGAAGCT 61.817 55.000 9.92 0.00 0.00 3.74
2042 2085 0.319555 ACATGTGGGTCGACGTGAAG 60.320 55.000 9.92 0.28 36.51 3.02
2043 2086 0.598942 CACATGTGGGTCGACGTGAA 60.599 55.000 18.51 0.00 36.51 3.18
2045 2088 1.300620 ACACATGTGGGTCGACGTG 60.301 57.895 28.64 12.88 38.59 4.49
2047 2090 1.300620 ACACACATGTGGGTCGACG 60.301 57.895 28.06 9.61 45.52 5.12
2048 2091 4.771127 ACACACATGTGGGTCGAC 57.229 55.556 28.06 7.13 45.52 4.20
2062 2105 5.220416 CGCCTTCAGTAAGCAGTATTAACAC 60.220 44.000 0.00 0.00 0.00 3.32
2063 2106 4.868171 CGCCTTCAGTAAGCAGTATTAACA 59.132 41.667 0.00 0.00 0.00 2.41
2066 2109 4.730949 ACGCCTTCAGTAAGCAGTATTA 57.269 40.909 0.00 0.00 0.00 0.98
2067 2110 3.611766 ACGCCTTCAGTAAGCAGTATT 57.388 42.857 0.00 0.00 0.00 1.89
2068 2111 3.488721 CGTACGCCTTCAGTAAGCAGTAT 60.489 47.826 0.52 0.00 30.89 2.12
2070 2113 1.402456 CGTACGCCTTCAGTAAGCAGT 60.402 52.381 0.52 0.00 0.00 4.40
2074 2117 0.989890 GCACGTACGCCTTCAGTAAG 59.010 55.000 16.72 0.00 0.00 2.34
2105 2148 4.230745 GGCACCCTGAGGAAATTAGTTA 57.769 45.455 0.00 0.00 36.73 2.24
2107 2150 2.808906 GGCACCCTGAGGAAATTAGT 57.191 50.000 0.00 0.00 36.73 2.24
2497 2543 5.007136 GCAGAACCAGATCTAAAGCATACAC 59.993 44.000 0.00 0.00 0.00 2.90
2629 2676 4.346129 GAAGAGCAAAGAACACAACACAG 58.654 43.478 0.00 0.00 0.00 3.66
2697 2745 3.999001 CTGCATCACTACAGCTCAAGAAA 59.001 43.478 0.00 0.00 0.00 2.52
2706 2754 5.593183 CATCTATTGCTGCATCACTACAG 57.407 43.478 1.84 0.00 36.96 2.74
2766 2814 0.675633 CAAGTTTCAGCACCCCCAAG 59.324 55.000 0.00 0.00 0.00 3.61
2791 2839 2.154462 CTGATTTCGTGGCCACTTTCT 58.846 47.619 32.28 15.24 0.00 2.52
2796 2844 3.363341 TTTTTCTGATTTCGTGGCCAC 57.637 42.857 26.78 26.78 0.00 5.01
2997 3049 6.463995 TTACTTCTGCACAAGTGGATTTTT 57.536 33.333 16.62 0.00 37.20 1.94
3001 3053 7.944729 AATATTTACTTCTGCACAAGTGGAT 57.055 32.000 16.62 12.11 37.20 3.41
3003 3055 7.692291 CGTTAATATTTACTTCTGCACAAGTGG 59.308 37.037 16.62 0.00 37.20 4.00
3085 3138 7.174946 CCAAGATGTAACTTAGGTTGACAATGT 59.825 37.037 0.00 0.00 36.92 2.71
3090 3143 8.665685 CATTACCAAGATGTAACTTAGGTTGAC 58.334 37.037 0.00 0.00 36.92 3.18
3204 3257 4.244066 CTGGATATGATTCGAAGCCTCAG 58.756 47.826 11.45 7.42 0.00 3.35
3245 3298 0.808755 CAACCTACCAAACGCATCCC 59.191 55.000 0.00 0.00 0.00 3.85
3265 3318 9.881773 ATAGATGAAAATAGCCCAAAAAGGATA 57.118 29.630 0.00 0.00 41.22 2.59
3284 3337 6.101150 ACCATAACCAACTTAGCCATAGATGA 59.899 38.462 0.00 0.00 0.00 2.92
3290 3343 4.929479 TCAACCATAACCAACTTAGCCAT 58.071 39.130 0.00 0.00 0.00 4.40
3293 3346 5.001232 TCACTCAACCATAACCAACTTAGC 58.999 41.667 0.00 0.00 0.00 3.09
3299 3352 7.285629 TGTTTGTATTCACTCAACCATAACCAA 59.714 33.333 0.00 0.00 0.00 3.67
3303 3356 7.283354 TGTGTGTTTGTATTCACTCAACCATAA 59.717 33.333 0.00 0.00 35.91 1.90
3305 3358 5.592282 TGTGTGTTTGTATTCACTCAACCAT 59.408 36.000 0.00 0.00 35.91 3.55
3365 3421 5.982516 TCATAAAATTGTTCACTGGTGCAAC 59.017 36.000 0.00 0.00 0.00 4.17
3374 3433 9.687717 CAAAACACTTGTCATAAAATTGTTCAC 57.312 29.630 0.00 0.00 31.53 3.18
3378 3437 8.663911 CCAACAAAACACTTGTCATAAAATTGT 58.336 29.630 0.00 0.00 0.00 2.71
3399 3458 2.380064 ATCCAAAACTCCTGCCAACA 57.620 45.000 0.00 0.00 0.00 3.33
3413 3472 4.525874 TGCATGTTGACAACCATAATCCAA 59.474 37.500 15.59 0.00 0.00 3.53
3450 3509 3.252944 CACAACATAGGTCATGCACAACA 59.747 43.478 0.00 0.00 38.29 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.