Multiple sequence alignment - TraesCS2D01G411000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G411000 chr2D 100.000 3348 0 0 1 3348 526110549 526113896 0.000000e+00 6183.0
1 TraesCS2D01G411000 chr2D 97.619 588 13 1 1 588 447798315 447797729 0.000000e+00 1007.0
2 TraesCS2D01G411000 chr2B 90.313 1693 97 31 669 2349 621314359 621312722 0.000000e+00 2156.0
3 TraesCS2D01G411000 chr2B 85.933 718 51 19 2449 3137 621312698 621312002 0.000000e+00 721.0
4 TraesCS2D01G411000 chr2A 89.276 1436 79 39 1230 2647 670685821 670684443 0.000000e+00 1729.0
5 TraesCS2D01G411000 chr2A 92.400 500 29 5 669 1163 670686329 670685834 0.000000e+00 704.0
6 TraesCS2D01G411000 chr2A 93.827 81 3 2 588 668 74956927 74957005 1.630000e-23 121.0
7 TraesCS2D01G411000 chr4D 98.299 588 10 0 1 588 72503201 72503788 0.000000e+00 1031.0
8 TraesCS2D01G411000 chr4D 97.000 600 13 3 1 598 22538976 22538380 0.000000e+00 1003.0
9 TraesCS2D01G411000 chr6D 97.959 588 12 0 1 588 23793528 23792941 0.000000e+00 1020.0
10 TraesCS2D01G411000 chr6D 97.619 588 13 1 1 588 114320411 114319825 0.000000e+00 1007.0
11 TraesCS2D01G411000 chr6D 82.039 206 29 6 1574 1772 324825856 324825652 5.740000e-38 169.0
12 TraesCS2D01G411000 chrUn 97.631 591 13 1 1 590 20477696 20478286 0.000000e+00 1013.0
13 TraesCS2D01G411000 chr5D 97.619 588 14 0 1 588 432355933 432356520 0.000000e+00 1009.0
14 TraesCS2D01G411000 chr5D 97.623 589 12 2 1 589 487374775 487375361 0.000000e+00 1009.0
15 TraesCS2D01G411000 chr5D 97.623 589 13 1 1 589 487394600 487395187 0.000000e+00 1009.0
16 TraesCS2D01G411000 chr6A 81.773 203 32 4 1574 1772 462254659 462254458 7.430000e-37 165.0
17 TraesCS2D01G411000 chr6A 81.068 206 31 6 1574 1772 463165445 463165241 1.240000e-34 158.0
18 TraesCS2D01G411000 chr4B 85.484 62 6 3 2933 2992 654747112 654747172 1.000000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G411000 chr2D 526110549 526113896 3347 False 6183.0 6183 100.000 1 3348 1 chr2D.!!$F1 3347
1 TraesCS2D01G411000 chr2D 447797729 447798315 586 True 1007.0 1007 97.619 1 588 1 chr2D.!!$R1 587
2 TraesCS2D01G411000 chr2B 621312002 621314359 2357 True 1438.5 2156 88.123 669 3137 2 chr2B.!!$R1 2468
3 TraesCS2D01G411000 chr2A 670684443 670686329 1886 True 1216.5 1729 90.838 669 2647 2 chr2A.!!$R1 1978
4 TraesCS2D01G411000 chr4D 72503201 72503788 587 False 1031.0 1031 98.299 1 588 1 chr4D.!!$F1 587
5 TraesCS2D01G411000 chr4D 22538380 22538976 596 True 1003.0 1003 97.000 1 598 1 chr4D.!!$R1 597
6 TraesCS2D01G411000 chr6D 23792941 23793528 587 True 1020.0 1020 97.959 1 588 1 chr6D.!!$R1 587
7 TraesCS2D01G411000 chr6D 114319825 114320411 586 True 1007.0 1007 97.619 1 588 1 chr6D.!!$R2 587
8 TraesCS2D01G411000 chrUn 20477696 20478286 590 False 1013.0 1013 97.631 1 590 1 chrUn.!!$F1 589
9 TraesCS2D01G411000 chr5D 432355933 432356520 587 False 1009.0 1009 97.619 1 588 1 chr5D.!!$F1 587
10 TraesCS2D01G411000 chr5D 487374775 487375361 586 False 1009.0 1009 97.623 1 589 1 chr5D.!!$F2 588
11 TraesCS2D01G411000 chr5D 487394600 487395187 587 False 1009.0 1009 97.623 1 589 1 chr5D.!!$F3 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 706 0.034896 CTACACACAAAGGACCCGCT 59.965 55.0 0.0 0.0 0.0 5.52 F
1402 1415 0.460722 TCGACCAGTCACCGTTTTCA 59.539 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1808 0.179015 TTCAAGCGGGGCAGTGTTAA 60.179 50.0 0.0 0.0 0.0 2.01 R
2446 2468 0.179070 ACCACACGCACACACACATA 60.179 50.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
528 530 2.873133 GCGTACAGCTTCTCCATAGT 57.127 50.000 0.00 0.00 44.04 2.12
590 592 2.296471 CAGACTTAGAACCACGACACCT 59.704 50.000 0.00 0.00 0.00 4.00
591 593 2.557490 AGACTTAGAACCACGACACCTC 59.443 50.000 0.00 0.00 0.00 3.85
592 594 1.617357 ACTTAGAACCACGACACCTCC 59.383 52.381 0.00 0.00 0.00 4.30
593 595 0.599558 TTAGAACCACGACACCTCCG 59.400 55.000 0.00 0.00 0.00 4.63
594 596 1.246056 TAGAACCACGACACCTCCGG 61.246 60.000 0.00 0.00 0.00 5.14
595 597 4.309950 AACCACGACACCTCCGGC 62.310 66.667 0.00 0.00 0.00 6.13
597 599 4.436998 CCACGACACCTCCGGCTC 62.437 72.222 0.00 0.00 0.00 4.70
598 600 3.680786 CACGACACCTCCGGCTCA 61.681 66.667 0.00 0.00 0.00 4.26
599 601 3.681835 ACGACACCTCCGGCTCAC 61.682 66.667 0.00 0.00 0.00 3.51
600 602 3.680786 CGACACCTCCGGCTCACA 61.681 66.667 0.00 0.00 0.00 3.58
601 603 2.048127 GACACCTCCGGCTCACAC 60.048 66.667 0.00 0.00 0.00 3.82
602 604 3.591254 GACACCTCCGGCTCACACC 62.591 68.421 0.00 0.00 0.00 4.16
610 612 4.643387 GGCTCACACCGGCCAACT 62.643 66.667 0.00 0.00 46.84 3.16
611 613 3.050275 GCTCACACCGGCCAACTC 61.050 66.667 0.00 0.00 0.00 3.01
612 614 2.743718 CTCACACCGGCCAACTCT 59.256 61.111 0.00 0.00 0.00 3.24
613 615 1.374758 CTCACACCGGCCAACTCTC 60.375 63.158 0.00 0.00 0.00 3.20
614 616 1.821061 CTCACACCGGCCAACTCTCT 61.821 60.000 0.00 0.00 0.00 3.10
615 617 1.669115 CACACCGGCCAACTCTCTG 60.669 63.158 0.00 0.00 0.00 3.35
616 618 1.837051 ACACCGGCCAACTCTCTGA 60.837 57.895 0.00 0.00 0.00 3.27
617 619 1.371183 CACCGGCCAACTCTCTGAA 59.629 57.895 0.00 0.00 0.00 3.02
618 620 0.250295 CACCGGCCAACTCTCTGAAA 60.250 55.000 0.00 0.00 0.00 2.69
619 621 0.472471 ACCGGCCAACTCTCTGAAAA 59.528 50.000 0.00 0.00 0.00 2.29
620 622 1.073923 ACCGGCCAACTCTCTGAAAAT 59.926 47.619 0.00 0.00 0.00 1.82
621 623 2.162681 CCGGCCAACTCTCTGAAAATT 58.837 47.619 2.24 0.00 0.00 1.82
622 624 2.095059 CCGGCCAACTCTCTGAAAATTG 60.095 50.000 2.24 0.00 0.00 2.32
623 625 2.813754 CGGCCAACTCTCTGAAAATTGA 59.186 45.455 2.24 0.00 0.00 2.57
624 626 3.441572 CGGCCAACTCTCTGAAAATTGAT 59.558 43.478 2.24 0.00 0.00 2.57
625 627 4.082571 CGGCCAACTCTCTGAAAATTGATT 60.083 41.667 2.24 0.00 0.00 2.57
626 628 5.166398 GGCCAACTCTCTGAAAATTGATTG 58.834 41.667 0.00 0.00 0.00 2.67
627 629 5.047802 GGCCAACTCTCTGAAAATTGATTGA 60.048 40.000 0.00 0.00 0.00 2.57
628 630 5.860716 GCCAACTCTCTGAAAATTGATTGAC 59.139 40.000 0.00 0.00 0.00 3.18
629 631 6.385033 CCAACTCTCTGAAAATTGATTGACC 58.615 40.000 0.00 0.00 0.00 4.02
630 632 6.385033 CAACTCTCTGAAAATTGATTGACCC 58.615 40.000 0.00 0.00 0.00 4.46
631 633 5.885465 ACTCTCTGAAAATTGATTGACCCT 58.115 37.500 0.00 0.00 0.00 4.34
632 634 7.020827 ACTCTCTGAAAATTGATTGACCCTA 57.979 36.000 0.00 0.00 0.00 3.53
633 635 7.637511 ACTCTCTGAAAATTGATTGACCCTAT 58.362 34.615 0.00 0.00 0.00 2.57
634 636 8.112183 ACTCTCTGAAAATTGATTGACCCTATT 58.888 33.333 0.00 0.00 0.00 1.73
635 637 8.884124 TCTCTGAAAATTGATTGACCCTATTT 57.116 30.769 0.00 0.00 0.00 1.40
636 638 8.960591 TCTCTGAAAATTGATTGACCCTATTTC 58.039 33.333 0.00 0.00 0.00 2.17
637 639 8.648698 TCTGAAAATTGATTGACCCTATTTCA 57.351 30.769 0.00 0.00 35.14 2.69
638 640 9.087871 TCTGAAAATTGATTGACCCTATTTCAA 57.912 29.630 0.00 0.00 35.76 2.69
639 641 9.709495 CTGAAAATTGATTGACCCTATTTCAAA 57.291 29.630 0.00 0.00 36.57 2.69
646 648 9.874205 TTGATTGACCCTATTTCAAAATCATTC 57.126 29.630 0.00 0.00 36.57 2.67
647 649 8.190122 TGATTGACCCTATTTCAAAATCATTCG 58.810 33.333 0.00 0.00 36.57 3.34
648 650 7.695480 TTGACCCTATTTCAAAATCATTCGA 57.305 32.000 0.00 0.00 29.89 3.71
649 651 7.083875 TGACCCTATTTCAAAATCATTCGAC 57.916 36.000 0.00 0.00 0.00 4.20
650 652 6.884295 TGACCCTATTTCAAAATCATTCGACT 59.116 34.615 0.00 0.00 0.00 4.18
651 653 7.088589 ACCCTATTTCAAAATCATTCGACTG 57.911 36.000 0.00 0.00 0.00 3.51
652 654 6.095440 ACCCTATTTCAAAATCATTCGACTGG 59.905 38.462 2.65 0.00 0.00 4.00
653 655 5.973565 CCTATTTCAAAATCATTCGACTGGC 59.026 40.000 2.65 0.00 0.00 4.85
654 656 4.844998 TTTCAAAATCATTCGACTGGCA 57.155 36.364 2.65 0.00 0.00 4.92
655 657 5.389859 TTTCAAAATCATTCGACTGGCAT 57.610 34.783 2.65 0.00 0.00 4.40
656 658 5.389859 TTCAAAATCATTCGACTGGCATT 57.610 34.783 2.65 0.00 0.00 3.56
657 659 5.389859 TCAAAATCATTCGACTGGCATTT 57.610 34.783 2.65 0.41 0.00 2.32
658 660 6.507958 TCAAAATCATTCGACTGGCATTTA 57.492 33.333 2.65 0.00 0.00 1.40
659 661 6.554419 TCAAAATCATTCGACTGGCATTTAG 58.446 36.000 2.65 0.00 0.00 1.85
660 662 4.558538 AATCATTCGACTGGCATTTAGC 57.441 40.909 2.65 0.00 44.65 3.09
661 663 3.266510 TCATTCGACTGGCATTTAGCT 57.733 42.857 2.65 0.00 44.79 3.32
662 664 4.400529 TCATTCGACTGGCATTTAGCTA 57.599 40.909 2.65 0.00 44.79 3.32
663 665 4.765273 TCATTCGACTGGCATTTAGCTAA 58.235 39.130 0.86 0.86 44.79 3.09
664 666 5.182487 TCATTCGACTGGCATTTAGCTAAA 58.818 37.500 20.71 20.71 44.79 1.85
665 667 4.939509 TTCGACTGGCATTTAGCTAAAC 57.060 40.909 20.85 9.43 44.79 2.01
666 668 4.202245 TCGACTGGCATTTAGCTAAACT 57.798 40.909 20.85 8.00 44.79 2.66
667 669 3.932710 TCGACTGGCATTTAGCTAAACTG 59.067 43.478 20.85 18.69 44.79 3.16
668 670 3.932710 CGACTGGCATTTAGCTAAACTGA 59.067 43.478 20.85 0.00 44.79 3.41
669 671 4.391830 CGACTGGCATTTAGCTAAACTGAA 59.608 41.667 20.85 7.11 44.79 3.02
670 672 5.446473 CGACTGGCATTTAGCTAAACTGAAG 60.446 44.000 20.85 17.03 44.79 3.02
671 673 4.702131 ACTGGCATTTAGCTAAACTGAAGG 59.298 41.667 20.85 11.81 44.79 3.46
672 674 4.662278 TGGCATTTAGCTAAACTGAAGGT 58.338 39.130 20.85 0.70 44.79 3.50
684 686 3.536956 ACTGAAGGTCGAACAAGTGAA 57.463 42.857 1.87 0.00 0.00 3.18
687 689 4.098960 ACTGAAGGTCGAACAAGTGAACTA 59.901 41.667 1.87 0.00 30.35 2.24
704 706 0.034896 CTACACACAAAGGACCCGCT 59.965 55.000 0.00 0.00 0.00 5.52
709 711 1.207329 ACACAAAGGACCCGCTCTATC 59.793 52.381 0.00 0.00 0.00 2.08
715 717 4.450305 AAGGACCCGCTCTATCTACTAA 57.550 45.455 0.00 0.00 0.00 2.24
716 718 4.023726 AGGACCCGCTCTATCTACTAAG 57.976 50.000 0.00 0.00 0.00 2.18
717 719 3.395273 AGGACCCGCTCTATCTACTAAGT 59.605 47.826 0.00 0.00 0.00 2.24
718 720 4.596643 AGGACCCGCTCTATCTACTAAGTA 59.403 45.833 0.00 0.00 0.00 2.24
720 722 5.512921 GGACCCGCTCTATCTACTAAGTACT 60.513 48.000 0.00 0.00 0.00 2.73
721 723 6.295575 GGACCCGCTCTATCTACTAAGTACTA 60.296 46.154 0.00 0.00 0.00 1.82
722 724 7.256494 ACCCGCTCTATCTACTAAGTACTAT 57.744 40.000 0.00 0.00 0.00 2.12
723 725 7.688343 ACCCGCTCTATCTACTAAGTACTATT 58.312 38.462 0.00 0.00 0.00 1.73
761 763 4.309933 AGGTACGTGCCAGTTAAGTAAAC 58.690 43.478 25.19 0.00 38.46 2.01
922 926 1.704641 TAGAGCGCATCCATACACCT 58.295 50.000 11.47 0.00 0.00 4.00
957 961 3.135530 ACCATTCCTCATCTACTTGCCTC 59.864 47.826 0.00 0.00 0.00 4.70
1053 1061 0.821301 TTGCCATTGTGGTTCTCGCA 60.821 50.000 0.00 0.00 40.46 5.10
1074 1082 2.469516 GGTTATCCACCCTTGCGCG 61.470 63.158 0.00 0.00 40.19 6.86
1163 1171 1.527370 GGGCTGGGAGTGATGGTAC 59.473 63.158 0.00 0.00 0.00 3.34
1181 1189 6.890663 TGGTACGTATGTATACTTTGCAAC 57.109 37.500 0.00 0.00 32.11 4.17
1183 1191 5.234972 GGTACGTATGTATACTTTGCAACCC 59.765 44.000 0.00 0.00 32.11 4.11
1186 1194 4.026310 CGTATGTATACTTTGCAACCCGAC 60.026 45.833 0.00 0.00 0.00 4.79
1188 1196 1.662122 GTATACTTTGCAACCCGACGG 59.338 52.381 6.99 6.99 0.00 4.79
1250 1258 9.677567 TTTTAAAACTGATGTAGCAATGAGTTC 57.322 29.630 0.00 0.00 0.00 3.01
1271 1279 8.266392 AGTTCAGCTAGAATCTTTGATGAAAG 57.734 34.615 14.55 0.00 38.76 2.62
1317 1330 5.463392 TCGATCATAGCTCATGTTTTAGCAC 59.537 40.000 6.86 0.00 41.32 4.40
1327 1340 9.170734 AGCTCATGTTTTAGCACCATATATATG 57.829 33.333 14.78 14.78 41.32 1.78
1328 1341 8.950210 GCTCATGTTTTAGCACCATATATATGT 58.050 33.333 19.11 6.91 38.63 2.29
1402 1415 0.460722 TCGACCAGTCACCGTTTTCA 59.539 50.000 0.00 0.00 0.00 2.69
1512 1525 9.831737 CCTATGAATGAAACAGACTAAAAACTG 57.168 33.333 0.00 0.00 39.65 3.16
1923 1942 3.687212 CGGCACATGTACTGTTTTCCATA 59.313 43.478 0.00 0.00 35.29 2.74
1924 1943 4.201812 CGGCACATGTACTGTTTTCCATAG 60.202 45.833 0.00 0.00 35.29 2.23
1926 1945 5.163754 GGCACATGTACTGTTTTCCATAGAC 60.164 44.000 0.00 0.00 35.29 2.59
1927 1946 5.445939 GCACATGTACTGTTTTCCATAGACG 60.446 44.000 0.00 0.00 35.29 4.18
1928 1947 4.630069 ACATGTACTGTTTTCCATAGACGC 59.370 41.667 0.00 0.00 32.90 5.19
1929 1948 3.247442 TGTACTGTTTTCCATAGACGCG 58.753 45.455 3.53 3.53 0.00 6.01
1930 1949 2.736144 ACTGTTTTCCATAGACGCGA 57.264 45.000 15.93 0.00 0.00 5.87
1931 1950 3.247006 ACTGTTTTCCATAGACGCGAT 57.753 42.857 15.93 2.85 0.00 4.58
1939 1958 1.408422 CATAGACGCGATCGATGCAA 58.592 50.000 21.57 0.32 34.21 4.08
1952 1971 1.449789 CGATGCAACGATCGAGATGTC 59.550 52.381 24.34 12.50 46.72 3.06
1955 1974 1.472480 TGCAACGATCGAGATGTCTCA 59.528 47.619 24.34 8.26 43.00 3.27
1956 1975 2.099756 TGCAACGATCGAGATGTCTCAT 59.900 45.455 24.34 3.45 43.00 2.90
1957 1976 2.470628 GCAACGATCGAGATGTCTCATG 59.529 50.000 24.34 5.66 43.00 3.07
1958 1977 3.700154 CAACGATCGAGATGTCTCATGT 58.300 45.455 24.34 0.00 43.00 3.21
1959 1978 3.617540 ACGATCGAGATGTCTCATGTC 57.382 47.619 24.34 0.00 43.00 3.06
1960 1979 3.210227 ACGATCGAGATGTCTCATGTCT 58.790 45.455 24.34 0.00 43.00 3.41
1961 1980 4.381411 ACGATCGAGATGTCTCATGTCTA 58.619 43.478 24.34 0.00 43.00 2.59
1962 1981 4.212425 ACGATCGAGATGTCTCATGTCTAC 59.788 45.833 24.34 0.00 43.00 2.59
1963 1982 4.665394 CGATCGAGATGTCTCATGTCTACG 60.665 50.000 10.26 0.00 43.00 3.51
1964 1983 3.532542 TCGAGATGTCTCATGTCTACGT 58.467 45.455 10.38 0.00 43.00 3.57
1965 1984 3.939592 TCGAGATGTCTCATGTCTACGTT 59.060 43.478 10.38 0.00 43.00 3.99
1972 1994 6.025749 TGTCTCATGTCTACGTTCTTGATT 57.974 37.500 0.00 0.00 0.00 2.57
1974 1996 6.093404 GTCTCATGTCTACGTTCTTGATTCA 58.907 40.000 0.00 0.00 0.00 2.57
2017 2039 1.338107 CCCTACTCCCGCATGTGATA 58.662 55.000 8.11 0.00 0.00 2.15
2113 2135 0.249120 CCGTGCTCATCCAGTACCAA 59.751 55.000 0.00 0.00 34.29 3.67
2161 2183 2.125229 CTCATGCAGAGCGGTGCT 60.125 61.111 13.56 0.00 44.32 4.40
2197 2219 3.612247 GATGCAGCACTCGTGGGGT 62.612 63.158 0.00 0.00 0.00 4.95
2266 2288 4.803426 CGCCTCACGTCCAGCTCC 62.803 72.222 0.00 0.00 36.87 4.70
2333 2355 2.697761 GGCTCTGCGTACCAGTCGA 61.698 63.158 10.08 0.00 42.38 4.20
2335 2357 1.873863 CTCTGCGTACCAGTCGACA 59.126 57.895 19.50 0.00 42.38 4.35
2349 2371 6.698380 ACCAGTCGACAGTCAATTACTAATT 58.302 36.000 19.50 0.00 35.76 1.40
2351 2373 7.036220 CCAGTCGACAGTCAATTACTAATTCT 58.964 38.462 19.50 0.00 35.76 2.40
2356 2378 7.907045 TCGACAGTCAATTACTAATTCTCGTAC 59.093 37.037 0.41 0.00 35.76 3.67
2358 2380 7.755591 ACAGTCAATTACTAATTCTCGTACGA 58.244 34.615 18.41 18.41 35.76 3.43
2368 2390 8.838452 ACTAATTCTCGTACGAGTTTTCTATG 57.162 34.615 36.67 23.46 42.49 2.23
2371 2393 8.612233 AATTCTCGTACGAGTTTTCTATGTAC 57.388 34.615 36.67 0.00 42.49 2.90
2372 2394 6.974932 TCTCGTACGAGTTTTCTATGTACT 57.025 37.500 36.67 0.00 42.49 2.73
2373 2395 8.479313 TTCTCGTACGAGTTTTCTATGTACTA 57.521 34.615 36.67 15.61 42.49 1.82
2392 2414 8.347729 TGTACTATTGTATGTCAGTATTTGCG 57.652 34.615 0.00 0.00 0.00 4.85
2393 2415 7.977293 TGTACTATTGTATGTCAGTATTTGCGT 59.023 33.333 0.00 0.00 0.00 5.24
2394 2416 7.234187 ACTATTGTATGTCAGTATTTGCGTG 57.766 36.000 0.00 0.00 0.00 5.34
2395 2417 6.816640 ACTATTGTATGTCAGTATTTGCGTGT 59.183 34.615 0.00 0.00 0.00 4.49
2396 2418 5.524511 TTGTATGTCAGTATTTGCGTGTC 57.475 39.130 0.00 0.00 0.00 3.67
2397 2419 3.610677 TGTATGTCAGTATTTGCGTGTCG 59.389 43.478 0.00 0.00 0.00 4.35
2398 2420 1.424403 TGTCAGTATTTGCGTGTCGG 58.576 50.000 0.00 0.00 0.00 4.79
2399 2421 1.269883 TGTCAGTATTTGCGTGTCGGT 60.270 47.619 0.00 0.00 0.00 4.69
2400 2422 1.796459 GTCAGTATTTGCGTGTCGGTT 59.204 47.619 0.00 0.00 0.00 4.44
2401 2423 1.795872 TCAGTATTTGCGTGTCGGTTG 59.204 47.619 0.00 0.00 0.00 3.77
2402 2424 0.515564 AGTATTTGCGTGTCGGTTGC 59.484 50.000 0.00 0.00 0.00 4.17
2403 2425 0.236187 GTATTTGCGTGTCGGTTGCA 59.764 50.000 0.00 0.00 36.72 4.08
2404 2426 0.236187 TATTTGCGTGTCGGTTGCAC 59.764 50.000 0.00 0.00 38.55 4.57
2445 2467 4.261322 GCAACATGCATGGAACCTATGTAG 60.261 45.833 29.41 0.88 44.26 2.74
2446 2468 4.778213 ACATGCATGGAACCTATGTAGT 57.222 40.909 29.41 1.63 30.79 2.73
2447 2469 5.887214 ACATGCATGGAACCTATGTAGTA 57.113 39.130 29.41 0.00 30.79 1.82
2511 2536 6.258068 GCGCTACTACCAAGAACTGAAATAAT 59.742 38.462 0.00 0.00 0.00 1.28
2522 2547 1.867233 CTGAAATAATGGCGAGACGGG 59.133 52.381 0.00 0.00 0.00 5.28
2614 2652 2.433318 GACAGCTCGGTGCACTCC 60.433 66.667 17.98 0.00 45.94 3.85
2630 2668 3.384668 CACTCCATCAGTGCCTAATACG 58.615 50.000 0.00 0.00 46.30 3.06
2687 2733 5.501897 GCTGCGTACCAGTGTATGTTTAATC 60.502 44.000 11.47 0.00 43.71 1.75
2689 2735 6.167685 TGCGTACCAGTGTATGTTTAATCTT 58.832 36.000 0.00 0.00 36.51 2.40
2711 2757 9.699410 ATCTTGTTTATCCATGAATGTTCCTAA 57.301 29.630 0.00 0.00 0.00 2.69
2805 2851 6.400568 ACATGGAAACTATTGAAAATGCCTG 58.599 36.000 0.00 0.00 0.00 4.85
2806 2852 4.819769 TGGAAACTATTGAAAATGCCTGC 58.180 39.130 0.00 0.00 0.00 4.85
2864 2910 7.332678 TCAAGTCACATCAGTTTGTATGATCAG 59.667 37.037 0.09 0.00 35.20 2.90
2869 2915 6.372381 CACATCAGTTTGTATGATCAGTTGGA 59.628 38.462 0.09 0.00 35.20 3.53
2881 2927 0.466922 CAGTTGGATCAGGATGGGCC 60.467 60.000 0.00 0.00 36.16 5.80
2883 2929 2.000701 TTGGATCAGGATGGGCCGT 61.001 57.895 0.00 0.00 43.43 5.68
2901 2947 3.190535 GCCGTTTTCTCAGGCTCAAATTA 59.809 43.478 0.00 0.00 46.83 1.40
3002 3053 9.976255 TCACATGTATATAAAAGTTTACAACGC 57.024 29.630 0.00 0.00 36.23 4.84
3026 3077 6.790825 GCGTGTTGAGAAAATTAGACAAGTAC 59.209 38.462 0.00 0.00 0.00 2.73
3027 3078 7.307219 GCGTGTTGAGAAAATTAGACAAGTACT 60.307 37.037 0.00 0.00 0.00 2.73
3028 3079 8.004344 CGTGTTGAGAAAATTAGACAAGTACTG 58.996 37.037 0.00 0.00 0.00 2.74
3029 3080 8.283291 GTGTTGAGAAAATTAGACAAGTACTGG 58.717 37.037 0.00 0.00 0.00 4.00
3036 3087 9.678941 GAAAATTAGACAAGTACTGGAAAAAGG 57.321 33.333 3.64 0.00 0.00 3.11
3037 3088 8.990163 AAATTAGACAAGTACTGGAAAAAGGA 57.010 30.769 3.64 0.00 0.00 3.36
3039 3090 8.990163 ATTAGACAAGTACTGGAAAAAGGAAA 57.010 30.769 3.64 0.00 0.00 3.13
3040 3091 6.944234 AGACAAGTACTGGAAAAAGGAAAG 57.056 37.500 3.64 0.00 0.00 2.62
3042 3093 7.116736 AGACAAGTACTGGAAAAAGGAAAGAA 58.883 34.615 3.64 0.00 0.00 2.52
3043 3094 7.283354 AGACAAGTACTGGAAAAAGGAAAGAAG 59.717 37.037 3.64 0.00 0.00 2.85
3044 3095 7.116736 ACAAGTACTGGAAAAAGGAAAGAAGA 58.883 34.615 3.64 0.00 0.00 2.87
3045 3096 7.614192 ACAAGTACTGGAAAAAGGAAAGAAGAA 59.386 33.333 3.64 0.00 0.00 2.52
3046 3097 8.466798 CAAGTACTGGAAAAAGGAAAGAAGAAA 58.533 33.333 0.00 0.00 0.00 2.52
3047 3098 8.589701 AGTACTGGAAAAAGGAAAGAAGAAAA 57.410 30.769 0.00 0.00 0.00 2.29
3048 3099 9.031537 AGTACTGGAAAAAGGAAAGAAGAAAAA 57.968 29.630 0.00 0.00 0.00 1.94
3095 3146 6.801862 CCGAAGAAGACAATGAAAACCATAAC 59.198 38.462 0.00 0.00 34.45 1.89
3096 3147 7.308589 CCGAAGAAGACAATGAAAACCATAACT 60.309 37.037 0.00 0.00 34.45 2.24
3103 3154 9.744468 AGACAATGAAAACCATAACTAAAACAC 57.256 29.630 0.00 0.00 34.45 3.32
3121 3172 6.983474 AAACACACAAAATGGAAGGAAAAG 57.017 33.333 0.00 0.00 0.00 2.27
3122 3173 5.930837 ACACACAAAATGGAAGGAAAAGA 57.069 34.783 0.00 0.00 0.00 2.52
3123 3174 6.293004 ACACACAAAATGGAAGGAAAAGAA 57.707 33.333 0.00 0.00 0.00 2.52
3124 3175 6.706295 ACACACAAAATGGAAGGAAAAGAAA 58.294 32.000 0.00 0.00 0.00 2.52
3125 3176 7.164803 ACACACAAAATGGAAGGAAAAGAAAA 58.835 30.769 0.00 0.00 0.00 2.29
3126 3177 7.663493 ACACACAAAATGGAAGGAAAAGAAAAA 59.337 29.630 0.00 0.00 0.00 1.94
3149 3200 9.995957 AAAAACAATGAAAAATAAAGAAACCCG 57.004 25.926 0.00 0.00 0.00 5.28
3150 3201 8.950208 AAACAATGAAAAATAAAGAAACCCGA 57.050 26.923 0.00 0.00 0.00 5.14
3151 3202 9.554395 AAACAATGAAAAATAAAGAAACCCGAT 57.446 25.926 0.00 0.00 0.00 4.18
3152 3203 8.532977 ACAATGAAAAATAAAGAAACCCGATG 57.467 30.769 0.00 0.00 0.00 3.84
3153 3204 8.364142 ACAATGAAAAATAAAGAAACCCGATGA 58.636 29.630 0.00 0.00 0.00 2.92
3154 3205 9.202273 CAATGAAAAATAAAGAAACCCGATGAA 57.798 29.630 0.00 0.00 0.00 2.57
3155 3206 9.771534 AATGAAAAATAAAGAAACCCGATGAAA 57.228 25.926 0.00 0.00 0.00 2.69
3156 3207 8.810652 TGAAAAATAAAGAAACCCGATGAAAG 57.189 30.769 0.00 0.00 0.00 2.62
3157 3208 8.417884 TGAAAAATAAAGAAACCCGATGAAAGT 58.582 29.630 0.00 0.00 0.00 2.66
3158 3209 8.812147 AAAAATAAAGAAACCCGATGAAAGTC 57.188 30.769 0.00 0.00 0.00 3.01
3159 3210 5.796350 ATAAAGAAACCCGATGAAAGTCG 57.204 39.130 0.00 0.00 41.13 4.18
3160 3211 2.833631 AGAAACCCGATGAAAGTCGT 57.166 45.000 0.00 0.00 39.89 4.34
3161 3212 3.947910 AGAAACCCGATGAAAGTCGTA 57.052 42.857 0.00 0.00 39.89 3.43
3162 3213 4.261578 AGAAACCCGATGAAAGTCGTAA 57.738 40.909 0.00 0.00 39.89 3.18
3163 3214 4.828829 AGAAACCCGATGAAAGTCGTAAT 58.171 39.130 0.00 0.00 39.89 1.89
3164 3215 4.630069 AGAAACCCGATGAAAGTCGTAATG 59.370 41.667 0.00 0.00 39.89 1.90
3165 3216 3.880047 ACCCGATGAAAGTCGTAATGA 57.120 42.857 0.00 0.00 39.89 2.57
3166 3217 4.196626 ACCCGATGAAAGTCGTAATGAA 57.803 40.909 0.00 0.00 39.89 2.57
3167 3218 4.571919 ACCCGATGAAAGTCGTAATGAAA 58.428 39.130 0.00 0.00 39.89 2.69
3168 3219 4.998672 ACCCGATGAAAGTCGTAATGAAAA 59.001 37.500 0.00 0.00 39.89 2.29
3169 3220 5.470777 ACCCGATGAAAGTCGTAATGAAAAA 59.529 36.000 0.00 0.00 39.89 1.94
3170 3221 5.793457 CCCGATGAAAGTCGTAATGAAAAAC 59.207 40.000 0.00 0.00 39.89 2.43
3171 3222 6.367421 CCGATGAAAGTCGTAATGAAAAACA 58.633 36.000 0.00 0.00 39.89 2.83
3172 3223 6.302313 CCGATGAAAGTCGTAATGAAAAACAC 59.698 38.462 0.00 0.00 39.89 3.32
3173 3224 6.848800 CGATGAAAGTCGTAATGAAAAACACA 59.151 34.615 0.00 0.00 36.88 3.72
3174 3225 7.058354 CGATGAAAGTCGTAATGAAAAACACAG 59.942 37.037 0.00 0.00 36.88 3.66
3175 3226 7.310072 TGAAAGTCGTAATGAAAAACACAGA 57.690 32.000 0.00 0.00 0.00 3.41
3176 3227 7.753659 TGAAAGTCGTAATGAAAAACACAGAA 58.246 30.769 0.00 0.00 0.00 3.02
3177 3228 8.237949 TGAAAGTCGTAATGAAAAACACAGAAA 58.762 29.630 0.00 0.00 0.00 2.52
3178 3229 8.973835 AAAGTCGTAATGAAAAACACAGAAAA 57.026 26.923 0.00 0.00 0.00 2.29
3179 3230 8.973835 AAGTCGTAATGAAAAACACAGAAAAA 57.026 26.923 0.00 0.00 0.00 1.94
3180 3231 8.614994 AGTCGTAATGAAAAACACAGAAAAAG 57.385 30.769 0.00 0.00 0.00 2.27
3181 3232 8.455682 AGTCGTAATGAAAAACACAGAAAAAGA 58.544 29.630 0.00 0.00 0.00 2.52
3182 3233 9.068008 GTCGTAATGAAAAACACAGAAAAAGAA 57.932 29.630 0.00 0.00 0.00 2.52
3183 3234 9.627395 TCGTAATGAAAAACACAGAAAAAGAAA 57.373 25.926 0.00 0.00 0.00 2.52
3194 3245 9.921637 AACACAGAAAAAGAAATAACAACAAGA 57.078 25.926 0.00 0.00 0.00 3.02
3195 3246 9.921637 ACACAGAAAAAGAAATAACAACAAGAA 57.078 25.926 0.00 0.00 0.00 2.52
3208 3259 8.980143 ATAACAACAAGAATATTGAAAACCGG 57.020 30.769 0.00 0.00 0.00 5.28
3209 3260 6.642707 ACAACAAGAATATTGAAAACCGGA 57.357 33.333 9.46 0.00 0.00 5.14
3210 3261 6.443792 ACAACAAGAATATTGAAAACCGGAC 58.556 36.000 9.46 0.00 0.00 4.79
3211 3262 5.638596 ACAAGAATATTGAAAACCGGACC 57.361 39.130 9.46 0.00 0.00 4.46
3212 3263 5.074115 ACAAGAATATTGAAAACCGGACCA 58.926 37.500 9.46 0.00 0.00 4.02
3213 3264 5.183140 ACAAGAATATTGAAAACCGGACCAG 59.817 40.000 9.46 0.00 0.00 4.00
3214 3265 4.918588 AGAATATTGAAAACCGGACCAGT 58.081 39.130 9.46 0.00 0.00 4.00
3215 3266 4.941873 AGAATATTGAAAACCGGACCAGTC 59.058 41.667 9.46 0.00 0.00 3.51
3216 3267 2.951229 ATTGAAAACCGGACCAGTCT 57.049 45.000 9.46 0.00 0.00 3.24
3217 3268 5.687166 ATATTGAAAACCGGACCAGTCTA 57.313 39.130 9.46 0.00 0.00 2.59
3218 3269 3.396260 TTGAAAACCGGACCAGTCTAG 57.604 47.619 9.46 0.00 0.00 2.43
3219 3270 1.001633 TGAAAACCGGACCAGTCTAGC 59.998 52.381 9.46 0.00 0.00 3.42
3220 3271 1.275573 GAAAACCGGACCAGTCTAGCT 59.724 52.381 9.46 0.00 0.00 3.32
3221 3272 2.226962 AAACCGGACCAGTCTAGCTA 57.773 50.000 9.46 0.00 0.00 3.32
3222 3273 1.765230 AACCGGACCAGTCTAGCTAG 58.235 55.000 15.01 15.01 0.00 3.42
3223 3274 0.624785 ACCGGACCAGTCTAGCTAGT 59.375 55.000 20.10 1.14 0.00 2.57
3224 3275 1.005687 ACCGGACCAGTCTAGCTAGTT 59.994 52.381 20.10 7.59 0.00 2.24
3225 3276 2.100989 CCGGACCAGTCTAGCTAGTTT 58.899 52.381 20.10 7.24 0.00 2.66
3226 3277 2.496470 CCGGACCAGTCTAGCTAGTTTT 59.504 50.000 20.10 4.79 0.00 2.43
3227 3278 3.056035 CCGGACCAGTCTAGCTAGTTTTT 60.056 47.826 20.10 2.83 0.00 1.94
3246 3297 3.322191 TTTTAGGGGTCAAACCAAGCT 57.678 42.857 0.00 0.00 41.02 3.74
3247 3298 3.322191 TTTAGGGGTCAAACCAAGCTT 57.678 42.857 0.00 0.00 41.02 3.74
3248 3299 3.322191 TTAGGGGTCAAACCAAGCTTT 57.678 42.857 0.00 0.00 41.02 3.51
3249 3300 4.456662 TTAGGGGTCAAACCAAGCTTTA 57.543 40.909 0.00 0.00 41.02 1.85
3250 3301 3.542969 AGGGGTCAAACCAAGCTTTAT 57.457 42.857 0.00 0.00 41.02 1.40
3251 3302 3.856900 AGGGGTCAAACCAAGCTTTATT 58.143 40.909 0.00 0.00 41.02 1.40
3252 3303 3.832490 AGGGGTCAAACCAAGCTTTATTC 59.168 43.478 0.00 0.00 41.02 1.75
3253 3304 3.576550 GGGGTCAAACCAAGCTTTATTCA 59.423 43.478 0.00 0.00 41.02 2.57
3254 3305 4.222810 GGGGTCAAACCAAGCTTTATTCAT 59.777 41.667 0.00 0.00 41.02 2.57
3255 3306 5.410924 GGGTCAAACCAAGCTTTATTCATC 58.589 41.667 0.00 0.00 41.02 2.92
3256 3307 5.047377 GGGTCAAACCAAGCTTTATTCATCA 60.047 40.000 0.00 0.00 41.02 3.07
3257 3308 6.351286 GGGTCAAACCAAGCTTTATTCATCAT 60.351 38.462 0.00 0.00 41.02 2.45
3258 3309 7.147915 GGGTCAAACCAAGCTTTATTCATCATA 60.148 37.037 0.00 0.00 41.02 2.15
3259 3310 7.917505 GGTCAAACCAAGCTTTATTCATCATAG 59.082 37.037 0.00 0.00 38.42 2.23
3260 3311 8.462016 GTCAAACCAAGCTTTATTCATCATAGT 58.538 33.333 0.00 0.00 0.00 2.12
3261 3312 8.677300 TCAAACCAAGCTTTATTCATCATAGTC 58.323 33.333 0.00 0.00 0.00 2.59
3262 3313 7.573968 AACCAAGCTTTATTCATCATAGTCC 57.426 36.000 0.00 0.00 0.00 3.85
3263 3314 6.662755 ACCAAGCTTTATTCATCATAGTCCA 58.337 36.000 0.00 0.00 0.00 4.02
3264 3315 6.769822 ACCAAGCTTTATTCATCATAGTCCAG 59.230 38.462 0.00 0.00 0.00 3.86
3265 3316 6.994496 CCAAGCTTTATTCATCATAGTCCAGA 59.006 38.462 0.00 0.00 0.00 3.86
3266 3317 7.664731 CCAAGCTTTATTCATCATAGTCCAGAT 59.335 37.037 0.00 0.00 0.00 2.90
3267 3318 8.504815 CAAGCTTTATTCATCATAGTCCAGATG 58.495 37.037 0.00 0.00 42.25 2.90
3268 3319 7.166851 AGCTTTATTCATCATAGTCCAGATGG 58.833 38.462 0.00 0.00 41.45 3.51
3269 3320 6.939163 GCTTTATTCATCATAGTCCAGATGGT 59.061 38.462 0.00 0.00 41.45 3.55
3270 3321 7.094890 GCTTTATTCATCATAGTCCAGATGGTG 60.095 40.741 0.00 0.00 41.45 4.17
3271 3322 5.901413 ATTCATCATAGTCCAGATGGTGT 57.099 39.130 0.00 0.00 41.45 4.16
3272 3323 4.677673 TCATCATAGTCCAGATGGTGTG 57.322 45.455 0.00 0.00 41.45 3.82
3273 3324 3.389002 TCATCATAGTCCAGATGGTGTGG 59.611 47.826 0.00 0.00 41.45 4.17
3274 3325 2.118679 TCATAGTCCAGATGGTGTGGG 58.881 52.381 0.00 0.00 35.58 4.61
3275 3326 2.118679 CATAGTCCAGATGGTGTGGGA 58.881 52.381 0.00 0.00 35.58 4.37
3276 3327 2.568546 TAGTCCAGATGGTGTGGGAT 57.431 50.000 0.00 0.00 35.58 3.85
3277 3328 2.568546 AGTCCAGATGGTGTGGGATA 57.431 50.000 0.00 0.00 35.58 2.59
3278 3329 2.119495 AGTCCAGATGGTGTGGGATAC 58.881 52.381 0.00 0.00 35.58 2.24
3279 3330 1.837439 GTCCAGATGGTGTGGGATACA 59.163 52.381 0.00 0.00 35.58 2.29
3280 3331 2.238646 GTCCAGATGGTGTGGGATACAA 59.761 50.000 0.00 0.00 41.89 2.41
3281 3332 2.916269 TCCAGATGGTGTGGGATACAAA 59.084 45.455 0.00 0.00 41.89 2.83
3282 3333 3.332187 TCCAGATGGTGTGGGATACAAAA 59.668 43.478 0.00 0.00 41.89 2.44
3283 3334 4.017591 TCCAGATGGTGTGGGATACAAAAT 60.018 41.667 0.00 0.00 41.89 1.82
3284 3335 4.098349 CCAGATGGTGTGGGATACAAAATG 59.902 45.833 0.00 0.00 41.89 2.32
3285 3336 4.098349 CAGATGGTGTGGGATACAAAATGG 59.902 45.833 0.00 0.00 41.89 3.16
3286 3337 3.816398 TGGTGTGGGATACAAAATGGA 57.184 42.857 0.00 0.00 41.89 3.41
3287 3338 3.426615 TGGTGTGGGATACAAAATGGAC 58.573 45.455 0.00 0.00 41.89 4.02
3288 3339 2.758423 GGTGTGGGATACAAAATGGACC 59.242 50.000 0.00 0.00 41.89 4.46
3289 3340 2.422127 GTGTGGGATACAAAATGGACCG 59.578 50.000 0.00 0.00 41.89 4.79
3290 3341 2.040545 TGTGGGATACAAAATGGACCGT 59.959 45.455 0.00 0.00 36.06 4.83
3291 3342 2.422127 GTGGGATACAAAATGGACCGTG 59.578 50.000 0.00 0.00 39.74 4.94
3292 3343 2.021457 GGGATACAAAATGGACCGTGG 58.979 52.381 0.00 0.00 39.74 4.94
3293 3344 2.021457 GGATACAAAATGGACCGTGGG 58.979 52.381 0.00 0.00 0.00 4.61
3294 3345 2.021457 GATACAAAATGGACCGTGGGG 58.979 52.381 0.00 0.00 40.11 4.96
3295 3346 0.609681 TACAAAATGGACCGTGGGGC 60.610 55.000 0.00 0.00 36.48 5.80
3296 3347 1.606313 CAAAATGGACCGTGGGGCT 60.606 57.895 0.00 0.00 36.48 5.19
3297 3348 1.304134 AAAATGGACCGTGGGGCTC 60.304 57.895 0.00 0.00 36.48 4.70
3298 3349 3.622060 AAATGGACCGTGGGGCTCG 62.622 63.158 0.00 0.00 36.48 5.03
3302 3353 3.998672 GACCGTGGGGCTCGACAA 61.999 66.667 0.00 0.00 36.48 3.18
3303 3354 3.524648 GACCGTGGGGCTCGACAAA 62.525 63.158 0.00 0.00 36.48 2.83
3304 3355 3.047877 CCGTGGGGCTCGACAAAC 61.048 66.667 0.00 0.00 0.00 2.93
3305 3356 3.047877 CGTGGGGCTCGACAAACC 61.048 66.667 0.00 0.00 0.00 3.27
3306 3357 2.112297 GTGGGGCTCGACAAACCA 59.888 61.111 0.00 0.00 0.00 3.67
3307 3358 1.303317 GTGGGGCTCGACAAACCAT 60.303 57.895 0.00 0.00 33.19 3.55
3308 3359 0.893727 GTGGGGCTCGACAAACCATT 60.894 55.000 0.00 0.00 33.19 3.16
3309 3360 0.608035 TGGGGCTCGACAAACCATTC 60.608 55.000 0.00 0.00 0.00 2.67
3310 3361 0.608035 GGGGCTCGACAAACCATTCA 60.608 55.000 0.00 0.00 0.00 2.57
3311 3362 1.463674 GGGCTCGACAAACCATTCAT 58.536 50.000 0.00 0.00 0.00 2.57
3312 3363 1.133025 GGGCTCGACAAACCATTCATG 59.867 52.381 0.00 0.00 0.00 3.07
3313 3364 1.812571 GGCTCGACAAACCATTCATGT 59.187 47.619 0.00 0.00 0.00 3.21
3314 3365 2.159517 GGCTCGACAAACCATTCATGTC 60.160 50.000 0.00 0.00 39.98 3.06
3319 3370 3.810373 GACAAACCATTCATGTCGACAC 58.190 45.455 22.71 0.00 34.72 3.67
3320 3371 3.476552 ACAAACCATTCATGTCGACACT 58.523 40.909 22.71 7.55 0.00 3.55
3321 3372 4.637276 ACAAACCATTCATGTCGACACTA 58.363 39.130 22.71 9.15 0.00 2.74
3322 3373 5.060506 ACAAACCATTCATGTCGACACTAA 58.939 37.500 22.71 17.91 0.00 2.24
3323 3374 5.705441 ACAAACCATTCATGTCGACACTAAT 59.295 36.000 22.71 19.35 0.00 1.73
3324 3375 6.128282 ACAAACCATTCATGTCGACACTAATC 60.128 38.462 22.71 0.00 0.00 1.75
3325 3376 5.344743 ACCATTCATGTCGACACTAATCT 57.655 39.130 22.71 0.00 0.00 2.40
3326 3377 6.465439 ACCATTCATGTCGACACTAATCTA 57.535 37.500 22.71 2.64 0.00 1.98
3327 3378 6.873997 ACCATTCATGTCGACACTAATCTAA 58.126 36.000 22.71 7.81 0.00 2.10
3328 3379 7.327975 ACCATTCATGTCGACACTAATCTAAA 58.672 34.615 22.71 6.78 0.00 1.85
3329 3380 7.492669 ACCATTCATGTCGACACTAATCTAAAG 59.507 37.037 22.71 10.36 0.00 1.85
3330 3381 7.706607 CCATTCATGTCGACACTAATCTAAAGA 59.293 37.037 22.71 3.52 0.00 2.52
3331 3382 8.750416 CATTCATGTCGACACTAATCTAAAGAG 58.250 37.037 22.71 6.07 0.00 2.85
3332 3383 7.392494 TCATGTCGACACTAATCTAAAGAGT 57.608 36.000 22.71 0.00 0.00 3.24
3333 3384 7.251281 TCATGTCGACACTAATCTAAAGAGTG 58.749 38.462 22.71 9.97 44.98 3.51
3343 3394 9.869844 CACTAATCTAAAGAGTGTGAAAACTTG 57.130 33.333 0.00 0.00 36.62 3.16
3344 3395 9.057089 ACTAATCTAAAGAGTGTGAAAACTTGG 57.943 33.333 0.00 0.00 0.00 3.61
3345 3396 5.751243 TCTAAAGAGTGTGAAAACTTGGC 57.249 39.130 0.00 0.00 0.00 4.52
3346 3397 5.437060 TCTAAAGAGTGTGAAAACTTGGCT 58.563 37.500 0.00 0.00 0.00 4.75
3347 3398 6.588204 TCTAAAGAGTGTGAAAACTTGGCTA 58.412 36.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
457 459 1.547372 GGAAGTAACAGCCCTACGTCA 59.453 52.381 0.00 0.00 31.70 4.35
528 530 3.053917 GGGATGTAAAGGCAAGGTCCTAA 60.054 47.826 0.00 0.00 34.82 2.69
594 596 3.050275 GAGTTGGCCGGTGTGAGC 61.050 66.667 1.90 0.00 0.00 4.26
595 597 1.374758 GAGAGTTGGCCGGTGTGAG 60.375 63.158 1.90 0.00 0.00 3.51
596 598 1.837051 AGAGAGTTGGCCGGTGTGA 60.837 57.895 1.90 0.00 0.00 3.58
597 599 1.669115 CAGAGAGTTGGCCGGTGTG 60.669 63.158 1.90 0.00 0.00 3.82
598 600 1.407656 TTCAGAGAGTTGGCCGGTGT 61.408 55.000 1.90 0.00 0.00 4.16
599 601 0.250295 TTTCAGAGAGTTGGCCGGTG 60.250 55.000 1.90 0.00 0.00 4.94
600 602 0.472471 TTTTCAGAGAGTTGGCCGGT 59.528 50.000 1.90 0.00 0.00 5.28
601 603 1.826385 ATTTTCAGAGAGTTGGCCGG 58.174 50.000 0.00 0.00 0.00 6.13
602 604 2.813754 TCAATTTTCAGAGAGTTGGCCG 59.186 45.455 0.00 0.00 0.00 6.13
603 605 5.047802 TCAATCAATTTTCAGAGAGTTGGCC 60.048 40.000 0.00 0.00 0.00 5.36
604 606 5.860716 GTCAATCAATTTTCAGAGAGTTGGC 59.139 40.000 0.00 0.00 0.00 4.52
605 607 6.385033 GGTCAATCAATTTTCAGAGAGTTGG 58.615 40.000 0.00 0.00 0.00 3.77
606 608 6.208204 AGGGTCAATCAATTTTCAGAGAGTTG 59.792 38.462 0.00 0.00 0.00 3.16
607 609 6.310149 AGGGTCAATCAATTTTCAGAGAGTT 58.690 36.000 0.00 0.00 0.00 3.01
608 610 5.885465 AGGGTCAATCAATTTTCAGAGAGT 58.115 37.500 0.00 0.00 0.00 3.24
609 611 8.517062 AATAGGGTCAATCAATTTTCAGAGAG 57.483 34.615 0.00 0.00 0.00 3.20
610 612 8.884124 AAATAGGGTCAATCAATTTTCAGAGA 57.116 30.769 0.00 0.00 0.00 3.10
611 613 8.742777 TGAAATAGGGTCAATCAATTTTCAGAG 58.257 33.333 0.00 0.00 0.00 3.35
612 614 8.648698 TGAAATAGGGTCAATCAATTTTCAGA 57.351 30.769 0.00 0.00 0.00 3.27
613 615 9.709495 TTTGAAATAGGGTCAATCAATTTTCAG 57.291 29.630 0.00 0.00 35.03 3.02
620 622 9.874205 GAATGATTTTGAAATAGGGTCAATCAA 57.126 29.630 0.00 0.00 35.03 2.57
621 623 8.190122 CGAATGATTTTGAAATAGGGTCAATCA 58.810 33.333 0.00 0.00 35.03 2.57
622 624 8.405531 TCGAATGATTTTGAAATAGGGTCAATC 58.594 33.333 0.00 0.00 35.03 2.67
623 625 8.190784 GTCGAATGATTTTGAAATAGGGTCAAT 58.809 33.333 0.00 0.00 35.03 2.57
624 626 7.393234 AGTCGAATGATTTTGAAATAGGGTCAA 59.607 33.333 0.00 0.00 33.21 3.18
625 627 6.884295 AGTCGAATGATTTTGAAATAGGGTCA 59.116 34.615 0.00 0.00 0.00 4.02
626 628 7.189512 CAGTCGAATGATTTTGAAATAGGGTC 58.810 38.462 7.15 0.00 0.00 4.46
627 629 6.095440 CCAGTCGAATGATTTTGAAATAGGGT 59.905 38.462 15.59 0.00 0.00 4.34
628 630 6.498304 CCAGTCGAATGATTTTGAAATAGGG 58.502 40.000 15.59 0.00 0.00 3.53
629 631 5.973565 GCCAGTCGAATGATTTTGAAATAGG 59.026 40.000 15.59 0.00 0.00 2.57
630 632 6.554419 TGCCAGTCGAATGATTTTGAAATAG 58.446 36.000 15.59 0.00 0.00 1.73
631 633 6.507958 TGCCAGTCGAATGATTTTGAAATA 57.492 33.333 15.59 0.00 0.00 1.40
632 634 5.389859 TGCCAGTCGAATGATTTTGAAAT 57.610 34.783 15.59 0.00 0.00 2.17
633 635 4.844998 TGCCAGTCGAATGATTTTGAAA 57.155 36.364 15.59 0.00 0.00 2.69
634 636 5.389859 AATGCCAGTCGAATGATTTTGAA 57.610 34.783 15.59 0.00 0.00 2.69
635 637 5.389859 AAATGCCAGTCGAATGATTTTGA 57.610 34.783 15.59 0.00 0.00 2.69
636 638 5.230726 GCTAAATGCCAGTCGAATGATTTTG 59.769 40.000 15.59 14.04 35.15 2.44
637 639 5.126061 AGCTAAATGCCAGTCGAATGATTTT 59.874 36.000 15.59 12.49 44.23 1.82
638 640 4.641989 AGCTAAATGCCAGTCGAATGATTT 59.358 37.500 15.59 14.84 44.23 2.17
639 641 4.202441 AGCTAAATGCCAGTCGAATGATT 58.798 39.130 15.59 4.13 44.23 2.57
640 642 3.813443 AGCTAAATGCCAGTCGAATGAT 58.187 40.909 15.59 0.00 44.23 2.45
641 643 3.266510 AGCTAAATGCCAGTCGAATGA 57.733 42.857 15.59 0.00 44.23 2.57
642 644 5.065218 AGTTTAGCTAAATGCCAGTCGAATG 59.935 40.000 21.28 5.75 44.23 2.67
643 645 5.065218 CAGTTTAGCTAAATGCCAGTCGAAT 59.935 40.000 21.28 0.00 44.23 3.34
644 646 4.391830 CAGTTTAGCTAAATGCCAGTCGAA 59.608 41.667 21.28 0.00 44.23 3.71
645 647 3.932710 CAGTTTAGCTAAATGCCAGTCGA 59.067 43.478 21.28 0.00 44.23 4.20
646 648 3.932710 TCAGTTTAGCTAAATGCCAGTCG 59.067 43.478 21.28 5.33 44.23 4.18
647 649 5.163713 CCTTCAGTTTAGCTAAATGCCAGTC 60.164 44.000 21.28 7.32 44.23 3.51
648 650 4.702131 CCTTCAGTTTAGCTAAATGCCAGT 59.298 41.667 21.28 0.00 44.23 4.00
649 651 4.702131 ACCTTCAGTTTAGCTAAATGCCAG 59.298 41.667 21.28 14.41 44.23 4.85
650 652 4.662278 ACCTTCAGTTTAGCTAAATGCCA 58.338 39.130 21.28 6.58 44.23 4.92
651 653 4.201822 CGACCTTCAGTTTAGCTAAATGCC 60.202 45.833 21.28 9.39 44.23 4.40
652 654 4.630069 TCGACCTTCAGTTTAGCTAAATGC 59.370 41.667 21.28 10.08 43.29 3.56
653 655 6.147164 TGTTCGACCTTCAGTTTAGCTAAATG 59.853 38.462 21.28 18.28 0.00 2.32
654 656 6.228258 TGTTCGACCTTCAGTTTAGCTAAAT 58.772 36.000 21.28 8.45 0.00 1.40
655 657 5.603596 TGTTCGACCTTCAGTTTAGCTAAA 58.396 37.500 14.96 14.96 0.00 1.85
656 658 5.204409 TGTTCGACCTTCAGTTTAGCTAA 57.796 39.130 0.86 0.86 0.00 3.09
657 659 4.859304 TGTTCGACCTTCAGTTTAGCTA 57.141 40.909 0.00 0.00 0.00 3.32
658 660 3.746045 TGTTCGACCTTCAGTTTAGCT 57.254 42.857 0.00 0.00 0.00 3.32
659 661 3.808174 ACTTGTTCGACCTTCAGTTTAGC 59.192 43.478 0.00 0.00 0.00 3.09
660 662 5.047847 TCACTTGTTCGACCTTCAGTTTAG 58.952 41.667 0.00 0.00 0.00 1.85
661 663 5.013568 TCACTTGTTCGACCTTCAGTTTA 57.986 39.130 0.00 0.00 0.00 2.01
662 664 3.869065 TCACTTGTTCGACCTTCAGTTT 58.131 40.909 0.00 0.00 0.00 2.66
663 665 3.536956 TCACTTGTTCGACCTTCAGTT 57.463 42.857 0.00 0.00 0.00 3.16
664 666 3.118738 AGTTCACTTGTTCGACCTTCAGT 60.119 43.478 0.00 0.00 0.00 3.41
665 667 3.458189 AGTTCACTTGTTCGACCTTCAG 58.542 45.455 0.00 0.00 0.00 3.02
666 668 3.536956 AGTTCACTTGTTCGACCTTCA 57.463 42.857 0.00 0.00 0.00 3.02
667 669 4.208666 GTGTAGTTCACTTGTTCGACCTTC 59.791 45.833 0.00 0.00 43.13 3.46
668 670 4.117685 GTGTAGTTCACTTGTTCGACCTT 58.882 43.478 0.00 0.00 43.13 3.50
669 671 3.131577 TGTGTAGTTCACTTGTTCGACCT 59.868 43.478 1.38 0.00 46.27 3.85
670 672 3.244579 GTGTGTAGTTCACTTGTTCGACC 59.755 47.826 1.38 0.00 46.27 4.79
671 673 3.861113 TGTGTGTAGTTCACTTGTTCGAC 59.139 43.478 1.38 0.00 46.27 4.20
672 674 4.112716 TGTGTGTAGTTCACTTGTTCGA 57.887 40.909 1.38 0.00 46.27 3.71
684 686 0.250166 GCGGGTCCTTTGTGTGTAGT 60.250 55.000 0.00 0.00 0.00 2.73
687 689 1.227853 GAGCGGGTCCTTTGTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
697 699 5.550290 AGTACTTAGTAGATAGAGCGGGTC 58.450 45.833 0.00 0.00 0.00 4.46
709 711 8.851541 ACCTAGCTAGCAATAGTACTTAGTAG 57.148 38.462 18.83 4.75 0.00 2.57
715 717 4.896482 AGCAACCTAGCTAGCAATAGTACT 59.104 41.667 18.83 0.00 44.50 2.73
716 718 5.203060 AGCAACCTAGCTAGCAATAGTAC 57.797 43.478 18.83 1.16 44.50 2.73
761 763 8.407832 TCCATTTGAAATGTGATTAGCTACATG 58.592 33.333 15.93 0.00 37.57 3.21
922 926 5.870706 TGAGGAATGGTGTGTGTTATGTTA 58.129 37.500 0.00 0.00 0.00 2.41
1163 1171 4.026310 GTCGGGTTGCAAAGTATACATACG 60.026 45.833 0.00 0.00 38.28 3.06
1183 1191 1.081094 GTGAATTACAACCCCCGTCG 58.919 55.000 0.00 0.00 0.00 5.12
1186 1194 2.785562 TGAAGTGAATTACAACCCCCG 58.214 47.619 0.00 0.00 0.00 5.73
1188 1196 5.975693 TCAATGAAGTGAATTACAACCCC 57.024 39.130 0.00 0.00 0.00 4.95
1227 1235 7.361201 GCTGAACTCATTGCTACATCAGTTTTA 60.361 37.037 0.00 0.00 36.18 1.52
1228 1236 6.569226 GCTGAACTCATTGCTACATCAGTTTT 60.569 38.462 0.00 0.00 36.18 2.43
1240 1248 6.093219 TCAAAGATTCTAGCTGAACTCATTGC 59.907 38.462 0.00 0.00 37.52 3.56
1241 1249 7.606858 TCAAAGATTCTAGCTGAACTCATTG 57.393 36.000 0.00 7.78 37.52 2.82
1242 1250 8.045507 TCATCAAAGATTCTAGCTGAACTCATT 58.954 33.333 0.00 0.00 37.52 2.57
1245 1253 7.840342 TTCATCAAAGATTCTAGCTGAACTC 57.160 36.000 0.00 0.00 37.52 3.01
1250 1258 9.557338 CTTTTCTTTCATCAAAGATTCTAGCTG 57.443 33.333 0.00 0.00 46.05 4.24
1271 1279 6.369065 TCGATTCTAGCTTGACTTTCCTTTTC 59.631 38.462 0.00 0.00 0.00 2.29
1274 1282 5.407407 TCGATTCTAGCTTGACTTTCCTT 57.593 39.130 0.00 0.00 0.00 3.36
1275 1283 5.127845 TGATCGATTCTAGCTTGACTTTCCT 59.872 40.000 0.00 0.00 0.00 3.36
1276 1284 5.352284 TGATCGATTCTAGCTTGACTTTCC 58.648 41.667 0.00 0.00 0.00 3.13
1277 1285 7.148820 GCTATGATCGATTCTAGCTTGACTTTC 60.149 40.741 22.88 0.00 34.98 2.62
1278 1286 6.644592 GCTATGATCGATTCTAGCTTGACTTT 59.355 38.462 22.88 0.00 34.98 2.66
1279 1287 6.015519 AGCTATGATCGATTCTAGCTTGACTT 60.016 38.462 25.34 11.52 43.22 3.01
1348 1361 1.145759 CGCACGCACCACCTGTATAG 61.146 60.000 0.00 0.00 0.00 1.31
1391 1404 2.935849 CGATCATGGATGAAAACGGTGA 59.064 45.455 0.00 0.00 40.69 4.02
1402 1415 4.687215 CCGGCGGCGATCATGGAT 62.687 66.667 34.49 0.00 0.00 3.41
1512 1525 3.185188 CACATGCATGCGAGACCTTATAC 59.815 47.826 26.53 0.00 0.00 1.47
1516 1530 0.321919 ACACATGCATGCGAGACCTT 60.322 50.000 26.53 1.08 0.00 3.50
1556 1570 9.241317 CATTTCACCTAGATTAATACGTTACGT 57.759 33.333 16.31 16.31 44.35 3.57
1557 1571 8.212495 GCATTTCACCTAGATTAATACGTTACG 58.788 37.037 2.19 2.19 0.00 3.18
1558 1572 9.037737 TGCATTTCACCTAGATTAATACGTTAC 57.962 33.333 0.00 0.00 0.00 2.50
1559 1573 9.037737 GTGCATTTCACCTAGATTAATACGTTA 57.962 33.333 0.00 0.00 39.79 3.18
1560 1574 7.769044 AGTGCATTTCACCTAGATTAATACGTT 59.231 33.333 0.00 0.00 46.81 3.99
1789 1808 0.179015 TTCAAGCGGGGCAGTGTTAA 60.179 50.000 0.00 0.00 0.00 2.01
1923 1942 2.224217 CGTTGCATCGATCGCGTCT 61.224 57.895 11.09 0.00 38.98 4.18
1924 1943 1.540607 ATCGTTGCATCGATCGCGTC 61.541 55.000 23.48 1.94 45.57 5.19
1926 1945 3.224806 ATCGTTGCATCGATCGCG 58.775 55.556 23.48 7.25 45.57 5.87
1939 1958 3.210227 AGACATGAGACATCTCGATCGT 58.790 45.455 15.94 0.00 45.72 3.73
1948 1967 5.644977 TCAAGAACGTAGACATGAGACAT 57.355 39.130 0.00 0.00 0.00 3.06
1952 1971 5.289675 GGTGAATCAAGAACGTAGACATGAG 59.710 44.000 0.00 0.00 0.00 2.90
1955 1974 4.174009 CGGTGAATCAAGAACGTAGACAT 58.826 43.478 0.00 0.00 0.00 3.06
1956 1975 3.005050 ACGGTGAATCAAGAACGTAGACA 59.995 43.478 0.00 0.00 32.30 3.41
1957 1976 3.364023 CACGGTGAATCAAGAACGTAGAC 59.636 47.826 0.74 0.00 32.85 2.59
1958 1977 3.005050 ACACGGTGAATCAAGAACGTAGA 59.995 43.478 16.29 0.00 32.85 2.59
1959 1978 3.314553 ACACGGTGAATCAAGAACGTAG 58.685 45.455 16.29 2.88 32.85 3.51
1960 1979 3.374220 ACACGGTGAATCAAGAACGTA 57.626 42.857 16.29 0.00 32.85 3.57
1961 1980 2.234300 ACACGGTGAATCAAGAACGT 57.766 45.000 16.29 0.00 34.61 3.99
1962 1981 3.739300 AGTAACACGGTGAATCAAGAACG 59.261 43.478 16.29 0.00 0.00 3.95
1963 1982 6.423001 AGTTAGTAACACGGTGAATCAAGAAC 59.577 38.462 16.29 9.42 0.00 3.01
1964 1983 6.422701 CAGTTAGTAACACGGTGAATCAAGAA 59.577 38.462 16.29 0.00 0.00 2.52
1965 1984 5.924254 CAGTTAGTAACACGGTGAATCAAGA 59.076 40.000 16.29 0.00 0.00 3.02
1972 1994 4.405116 AAACCAGTTAGTAACACGGTGA 57.595 40.909 21.43 0.00 38.82 4.02
1996 2018 2.063979 CACATGCGGGAGTAGGGGA 61.064 63.158 0.00 0.00 28.58 4.81
1997 2019 1.410850 ATCACATGCGGGAGTAGGGG 61.411 60.000 0.00 0.00 0.00 4.79
1998 2020 1.338107 TATCACATGCGGGAGTAGGG 58.662 55.000 0.00 0.00 0.00 3.53
1999 2021 3.509967 TGTATATCACATGCGGGAGTAGG 59.490 47.826 0.00 0.00 30.04 3.18
2000 2022 4.738124 CTGTATATCACATGCGGGAGTAG 58.262 47.826 0.00 0.00 36.29 2.57
2001 2023 3.056821 GCTGTATATCACATGCGGGAGTA 60.057 47.826 0.00 0.00 36.29 2.59
2002 2024 2.289072 GCTGTATATCACATGCGGGAGT 60.289 50.000 0.00 0.00 36.29 3.85
2003 2025 2.341257 GCTGTATATCACATGCGGGAG 58.659 52.381 0.00 0.00 36.29 4.30
2004 2026 1.336795 CGCTGTATATCACATGCGGGA 60.337 52.381 0.00 0.00 44.19 5.14
2005 2027 1.070821 CGCTGTATATCACATGCGGG 58.929 55.000 0.00 0.00 44.19 6.13
2017 2039 0.603707 AGTTGCACTGCACGCTGTAT 60.604 50.000 2.26 0.00 38.71 2.29
2041 2063 1.067776 ACGAAGGTTAGCTTCACTCCG 60.068 52.381 21.61 11.71 0.00 4.63
2137 2159 1.216444 GCTCTGCATGAGGTCGACA 59.784 57.895 18.91 0.00 42.87 4.35
2197 2219 1.290324 GTCGAGCTTCCAGACAGCA 59.710 57.895 0.00 0.00 39.99 4.41
2266 2288 3.843240 GCGACGAGCTTCTTGCCG 61.843 66.667 0.00 0.00 44.23 5.69
2333 2355 7.755591 TCGTACGAGAATTAGTAATTGACTGT 58.244 34.615 15.28 8.27 39.39 3.55
2335 2357 7.983307 ACTCGTACGAGAATTAGTAATTGACT 58.017 34.615 42.94 18.12 44.53 3.41
2349 2371 6.974932 AGTACATAGAAAACTCGTACGAGA 57.025 37.500 42.94 24.90 44.53 4.04
2351 2373 8.668353 ACAATAGTACATAGAAAACTCGTACGA 58.332 33.333 18.41 18.41 37.96 3.43
2368 2390 8.266682 CACGCAAATACTGACATACAATAGTAC 58.733 37.037 0.00 0.00 31.96 2.73
2371 2393 7.234187 ACACGCAAATACTGACATACAATAG 57.766 36.000 0.00 0.00 0.00 1.73
2372 2394 6.020201 CGACACGCAAATACTGACATACAATA 60.020 38.462 0.00 0.00 0.00 1.90
2373 2395 5.220397 CGACACGCAAATACTGACATACAAT 60.220 40.000 0.00 0.00 0.00 2.71
2380 2402 1.425412 ACCGACACGCAAATACTGAC 58.575 50.000 0.00 0.00 0.00 3.51
2381 2403 1.795872 CAACCGACACGCAAATACTGA 59.204 47.619 0.00 0.00 0.00 3.41
2382 2404 1.724654 GCAACCGACACGCAAATACTG 60.725 52.381 0.00 0.00 0.00 2.74
2384 2406 0.236187 TGCAACCGACACGCAAATAC 59.764 50.000 0.00 0.00 31.46 1.89
2385 2407 0.236187 GTGCAACCGACACGCAAATA 59.764 50.000 0.00 0.00 37.41 1.40
2386 2408 1.008995 GTGCAACCGACACGCAAAT 60.009 52.632 0.00 0.00 37.41 2.32
2387 2409 2.109739 AGTGCAACCGACACGCAAA 61.110 52.632 0.00 0.00 42.94 3.68
2388 2410 2.512745 AGTGCAACCGACACGCAA 60.513 55.556 0.00 0.00 42.94 4.85
2389 2411 3.268603 CAGTGCAACCGACACGCA 61.269 61.111 0.00 0.00 42.94 5.24
2390 2412 4.666532 GCAGTGCAACCGACACGC 62.667 66.667 11.09 0.00 42.94 5.34
2391 2413 2.606961 ATGCAGTGCAACCGACACG 61.607 57.895 23.90 0.00 43.62 4.49
2392 2414 1.081906 CATGCAGTGCAACCGACAC 60.082 57.895 23.90 0.00 43.62 3.67
2393 2415 3.342909 CATGCAGTGCAACCGACA 58.657 55.556 23.90 0.00 43.62 4.35
2402 2424 2.767445 CCATCCCGTGCATGCAGTG 61.767 63.158 23.41 16.70 0.00 3.66
2403 2425 2.438975 CCATCCCGTGCATGCAGT 60.439 61.111 23.41 1.92 0.00 4.40
2404 2426 2.438975 ACCATCCCGTGCATGCAG 60.439 61.111 23.41 14.94 0.00 4.41
2434 2456 5.291128 GCACACACACATACTACATAGGTTC 59.709 44.000 0.00 0.00 0.00 3.62
2445 2467 0.234625 CCACACGCACACACACATAC 59.765 55.000 0.00 0.00 0.00 2.39
2446 2468 0.179070 ACCACACGCACACACACATA 60.179 50.000 0.00 0.00 0.00 2.29
2447 2469 0.179070 TACCACACGCACACACACAT 60.179 50.000 0.00 0.00 0.00 3.21
2487 2509 7.254455 CCATTATTTCAGTTCTTGGTAGTAGCG 60.254 40.741 0.00 0.00 0.00 4.26
2496 2518 5.563842 GTCTCGCCATTATTTCAGTTCTTG 58.436 41.667 0.00 0.00 0.00 3.02
2614 2652 2.789339 CACGTCGTATTAGGCACTGATG 59.211 50.000 0.00 0.00 41.52 3.07
2628 2666 7.117092 TGCATTAACATATATATTGCACGTCGT 59.883 33.333 12.81 0.00 35.74 4.34
2629 2667 7.452231 TGCATTAACATATATATTGCACGTCG 58.548 34.615 12.81 0.00 35.74 5.12
2630 2668 9.213819 CATGCATTAACATATATATTGCACGTC 57.786 33.333 17.21 0.00 40.40 4.34
2687 2733 9.956720 GATTAGGAACATTCATGGATAAACAAG 57.043 33.333 0.00 0.00 0.00 3.16
2689 2735 9.473007 TTGATTAGGAACATTCATGGATAAACA 57.527 29.630 0.00 0.00 0.00 2.83
2711 2757 6.943146 TCCGAACTCTAGAGCTGTATATTGAT 59.057 38.462 19.97 0.00 0.00 2.57
2805 2851 0.878416 TTGTCGCCTTGTACCATTGC 59.122 50.000 0.00 0.00 0.00 3.56
2806 2852 3.564511 CTTTTGTCGCCTTGTACCATTG 58.435 45.455 0.00 0.00 0.00 2.82
2864 2910 1.526917 CGGCCCATCCTGATCCAAC 60.527 63.158 0.00 0.00 0.00 3.77
2869 2915 0.625849 AGAAAACGGCCCATCCTGAT 59.374 50.000 0.00 0.00 0.00 2.90
2881 2927 7.692908 TTTTTAATTTGAGCCTGAGAAAACG 57.307 32.000 0.00 0.00 0.00 3.60
2979 3029 8.929993 CACGCGTTGTAAACTTTTATATACATG 58.070 33.333 10.22 0.00 46.99 3.21
2981 3031 8.016497 ACACGCGTTGTAAACTTTTATATACA 57.984 30.769 10.22 0.00 46.99 2.29
3000 3051 4.383774 TGTCTAATTTTCTCAACACGCG 57.616 40.909 3.53 3.53 0.00 6.01
3002 3053 8.004344 CAGTACTTGTCTAATTTTCTCAACACG 58.996 37.037 0.00 0.00 0.00 4.49
3010 3061 9.678941 CCTTTTTCCAGTACTTGTCTAATTTTC 57.321 33.333 0.00 0.00 0.00 2.29
3014 3065 8.990163 TTTCCTTTTTCCAGTACTTGTCTAAT 57.010 30.769 0.00 0.00 0.00 1.73
3054 3105 9.302345 GTCTTCTTCGGATTTTCTTTTTCTTTT 57.698 29.630 0.00 0.00 0.00 2.27
3055 3106 8.466798 TGTCTTCTTCGGATTTTCTTTTTCTTT 58.533 29.630 0.00 0.00 0.00 2.52
3056 3107 7.996385 TGTCTTCTTCGGATTTTCTTTTTCTT 58.004 30.769 0.00 0.00 0.00 2.52
3057 3108 7.568199 TGTCTTCTTCGGATTTTCTTTTTCT 57.432 32.000 0.00 0.00 0.00 2.52
3058 3109 8.694394 CATTGTCTTCTTCGGATTTTCTTTTTC 58.306 33.333 0.00 0.00 0.00 2.29
3059 3110 8.413229 TCATTGTCTTCTTCGGATTTTCTTTTT 58.587 29.630 0.00 0.00 0.00 1.94
3064 3115 7.114953 GGTTTTCATTGTCTTCTTCGGATTTTC 59.885 37.037 0.00 0.00 0.00 2.29
3071 3122 7.584987 AGTTATGGTTTTCATTGTCTTCTTCG 58.415 34.615 0.00 0.00 37.30 3.79
3079 3130 9.308318 GTGTGTTTTAGTTATGGTTTTCATTGT 57.692 29.630 0.00 0.00 37.30 2.71
3095 3146 8.485976 TTTTCCTTCCATTTTGTGTGTTTTAG 57.514 30.769 0.00 0.00 0.00 1.85
3096 3147 8.314751 TCTTTTCCTTCCATTTTGTGTGTTTTA 58.685 29.630 0.00 0.00 0.00 1.52
3123 3174 9.995957 CGGGTTTCTTTATTTTTCATTGTTTTT 57.004 25.926 0.00 0.00 0.00 1.94
3124 3175 9.384764 TCGGGTTTCTTTATTTTTCATTGTTTT 57.615 25.926 0.00 0.00 0.00 2.43
3125 3176 8.950208 TCGGGTTTCTTTATTTTTCATTGTTT 57.050 26.923 0.00 0.00 0.00 2.83
3126 3177 8.987890 CATCGGGTTTCTTTATTTTTCATTGTT 58.012 29.630 0.00 0.00 0.00 2.83
3127 3178 8.364142 TCATCGGGTTTCTTTATTTTTCATTGT 58.636 29.630 0.00 0.00 0.00 2.71
3128 3179 8.755696 TCATCGGGTTTCTTTATTTTTCATTG 57.244 30.769 0.00 0.00 0.00 2.82
3137 3188 5.243207 ACGACTTTCATCGGGTTTCTTTAT 58.757 37.500 0.00 0.00 46.56 1.40
3146 3197 5.539582 TTTTCATTACGACTTTCATCGGG 57.460 39.130 0.00 0.00 46.56 5.14
3147 3198 6.302313 GTGTTTTTCATTACGACTTTCATCGG 59.698 38.462 0.00 0.00 46.56 4.18
3149 3200 8.067784 TCTGTGTTTTTCATTACGACTTTCATC 58.932 33.333 0.00 0.00 0.00 2.92
3150 3201 7.925993 TCTGTGTTTTTCATTACGACTTTCAT 58.074 30.769 0.00 0.00 0.00 2.57
3151 3202 7.310072 TCTGTGTTTTTCATTACGACTTTCA 57.690 32.000 0.00 0.00 0.00 2.69
3152 3203 8.609478 TTTCTGTGTTTTTCATTACGACTTTC 57.391 30.769 0.00 0.00 0.00 2.62
3153 3204 8.973835 TTTTCTGTGTTTTTCATTACGACTTT 57.026 26.923 0.00 0.00 0.00 2.66
3154 3205 8.973835 TTTTTCTGTGTTTTTCATTACGACTT 57.026 26.923 0.00 0.00 0.00 3.01
3155 3206 8.455682 TCTTTTTCTGTGTTTTTCATTACGACT 58.544 29.630 0.00 0.00 0.00 4.18
3156 3207 8.609478 TCTTTTTCTGTGTTTTTCATTACGAC 57.391 30.769 0.00 0.00 0.00 4.34
3157 3208 9.627395 TTTCTTTTTCTGTGTTTTTCATTACGA 57.373 25.926 0.00 0.00 0.00 3.43
3168 3219 9.921637 TCTTGTTGTTATTTCTTTTTCTGTGTT 57.078 25.926 0.00 0.00 0.00 3.32
3169 3220 9.921637 TTCTTGTTGTTATTTCTTTTTCTGTGT 57.078 25.926 0.00 0.00 0.00 3.72
3182 3233 9.418045 CCGGTTTTCAATATTCTTGTTGTTATT 57.582 29.630 0.00 0.00 0.00 1.40
3183 3234 8.798402 TCCGGTTTTCAATATTCTTGTTGTTAT 58.202 29.630 0.00 0.00 0.00 1.89
3184 3235 8.077386 GTCCGGTTTTCAATATTCTTGTTGTTA 58.923 33.333 0.00 0.00 0.00 2.41
3185 3236 6.921307 GTCCGGTTTTCAATATTCTTGTTGTT 59.079 34.615 0.00 0.00 0.00 2.83
3186 3237 6.443792 GTCCGGTTTTCAATATTCTTGTTGT 58.556 36.000 0.00 0.00 0.00 3.32
3187 3238 5.861787 GGTCCGGTTTTCAATATTCTTGTTG 59.138 40.000 0.00 0.00 0.00 3.33
3188 3239 5.536916 TGGTCCGGTTTTCAATATTCTTGTT 59.463 36.000 0.00 0.00 0.00 2.83
3189 3240 5.074115 TGGTCCGGTTTTCAATATTCTTGT 58.926 37.500 0.00 0.00 0.00 3.16
3190 3241 5.183140 ACTGGTCCGGTTTTCAATATTCTTG 59.817 40.000 0.00 0.00 0.00 3.02
3191 3242 5.321927 ACTGGTCCGGTTTTCAATATTCTT 58.678 37.500 0.00 0.00 0.00 2.52
3192 3243 4.918588 ACTGGTCCGGTTTTCAATATTCT 58.081 39.130 0.00 0.00 0.00 2.40
3193 3244 4.941873 AGACTGGTCCGGTTTTCAATATTC 59.058 41.667 4.40 0.00 0.00 1.75
3194 3245 4.918588 AGACTGGTCCGGTTTTCAATATT 58.081 39.130 4.40 0.00 0.00 1.28
3195 3246 4.569719 AGACTGGTCCGGTTTTCAATAT 57.430 40.909 4.40 0.00 0.00 1.28
3196 3247 4.622220 GCTAGACTGGTCCGGTTTTCAATA 60.622 45.833 4.40 0.00 0.00 1.90
3197 3248 2.951229 AGACTGGTCCGGTTTTCAAT 57.049 45.000 4.40 0.00 0.00 2.57
3198 3249 2.549349 GCTAGACTGGTCCGGTTTTCAA 60.549 50.000 4.40 0.00 0.00 2.69
3199 3250 1.001633 GCTAGACTGGTCCGGTTTTCA 59.998 52.381 4.40 0.00 0.00 2.69
3200 3251 1.275573 AGCTAGACTGGTCCGGTTTTC 59.724 52.381 4.40 0.00 0.00 2.29
3201 3252 1.349067 AGCTAGACTGGTCCGGTTTT 58.651 50.000 4.40 0.00 0.00 2.43
3202 3253 2.100989 CTAGCTAGACTGGTCCGGTTT 58.899 52.381 16.15 1.34 0.00 3.27
3203 3254 1.005687 ACTAGCTAGACTGGTCCGGTT 59.994 52.381 27.45 0.00 34.47 4.44
3204 3255 0.624785 ACTAGCTAGACTGGTCCGGT 59.375 55.000 27.45 1.86 34.47 5.28
3205 3256 1.765230 AACTAGCTAGACTGGTCCGG 58.235 55.000 27.45 0.00 39.56 5.14
3206 3257 3.870633 AAAACTAGCTAGACTGGTCCG 57.129 47.619 27.45 0.00 39.56 4.79
3225 3276 3.648739 AGCTTGGTTTGACCCCTAAAAA 58.351 40.909 0.00 0.00 37.50 1.94
3226 3277 3.322191 AGCTTGGTTTGACCCCTAAAA 57.678 42.857 0.00 0.00 37.50 1.52
3227 3278 3.322191 AAGCTTGGTTTGACCCCTAAA 57.678 42.857 0.00 0.00 37.50 1.85
3228 3279 3.322191 AAAGCTTGGTTTGACCCCTAA 57.678 42.857 0.00 0.00 37.50 2.69
3229 3280 4.668138 ATAAAGCTTGGTTTGACCCCTA 57.332 40.909 0.00 0.00 37.50 3.53
3230 3281 3.542969 ATAAAGCTTGGTTTGACCCCT 57.457 42.857 0.00 0.00 37.50 4.79
3231 3282 3.576550 TGAATAAAGCTTGGTTTGACCCC 59.423 43.478 0.00 0.00 37.50 4.95
3232 3283 4.864704 TGAATAAAGCTTGGTTTGACCC 57.135 40.909 0.00 0.00 37.50 4.46
3233 3284 6.024552 TGATGAATAAAGCTTGGTTTGACC 57.975 37.500 0.00 0.00 39.22 4.02
3234 3285 8.462016 ACTATGATGAATAAAGCTTGGTTTGAC 58.538 33.333 0.00 0.00 0.00 3.18
3235 3286 8.579850 ACTATGATGAATAAAGCTTGGTTTGA 57.420 30.769 0.00 0.00 0.00 2.69
3236 3287 7.917505 GGACTATGATGAATAAAGCTTGGTTTG 59.082 37.037 0.00 0.00 0.00 2.93
3237 3288 7.615365 TGGACTATGATGAATAAAGCTTGGTTT 59.385 33.333 0.00 3.33 0.00 3.27
3238 3289 7.118723 TGGACTATGATGAATAAAGCTTGGTT 58.881 34.615 0.00 0.00 0.00 3.67
3239 3290 6.662755 TGGACTATGATGAATAAAGCTTGGT 58.337 36.000 0.00 0.00 0.00 3.67
3240 3291 6.994496 TCTGGACTATGATGAATAAAGCTTGG 59.006 38.462 0.00 0.00 0.00 3.61
3241 3292 8.504815 CATCTGGACTATGATGAATAAAGCTTG 58.495 37.037 0.00 0.00 41.69 4.01
3242 3293 7.664731 CCATCTGGACTATGATGAATAAAGCTT 59.335 37.037 0.00 0.00 41.69 3.74
3243 3294 7.166851 CCATCTGGACTATGATGAATAAAGCT 58.833 38.462 0.00 0.00 41.69 3.74
3244 3295 6.939163 ACCATCTGGACTATGATGAATAAAGC 59.061 38.462 2.55 0.00 41.69 3.51
3245 3296 7.935755 ACACCATCTGGACTATGATGAATAAAG 59.064 37.037 2.55 0.00 41.69 1.85
3246 3297 7.716560 CACACCATCTGGACTATGATGAATAAA 59.283 37.037 2.55 0.00 41.69 1.40
3247 3298 7.219322 CACACCATCTGGACTATGATGAATAA 58.781 38.462 2.55 0.00 41.69 1.40
3248 3299 6.239686 CCACACCATCTGGACTATGATGAATA 60.240 42.308 2.55 0.00 41.69 1.75
3249 3300 5.455755 CCACACCATCTGGACTATGATGAAT 60.456 44.000 2.55 0.00 41.69 2.57
3250 3301 4.141642 CCACACCATCTGGACTATGATGAA 60.142 45.833 2.55 0.00 41.69 2.57
3251 3302 3.389002 CCACACCATCTGGACTATGATGA 59.611 47.826 2.55 0.00 41.69 2.92
3252 3303 3.495629 CCCACACCATCTGGACTATGATG 60.496 52.174 2.55 0.00 39.60 3.07
3253 3304 2.707791 CCCACACCATCTGGACTATGAT 59.292 50.000 2.55 0.00 38.94 2.45
3254 3305 2.118679 CCCACACCATCTGGACTATGA 58.881 52.381 2.55 0.00 38.94 2.15
3255 3306 2.118679 TCCCACACCATCTGGACTATG 58.881 52.381 2.55 0.00 38.94 2.23
3256 3307 2.568546 TCCCACACCATCTGGACTAT 57.431 50.000 2.55 0.00 38.94 2.12
3257 3308 2.568546 ATCCCACACCATCTGGACTA 57.431 50.000 2.55 0.00 38.94 2.59
3258 3309 2.119495 GTATCCCACACCATCTGGACT 58.881 52.381 2.55 0.00 38.94 3.85
3259 3310 1.837439 TGTATCCCACACCATCTGGAC 59.163 52.381 2.55 0.00 38.94 4.02
3260 3311 2.262266 TGTATCCCACACCATCTGGA 57.738 50.000 2.55 0.00 38.94 3.86
3261 3312 3.364460 TTTGTATCCCACACCATCTGG 57.636 47.619 0.00 0.00 36.69 3.86
3262 3313 4.098349 CCATTTTGTATCCCACACCATCTG 59.902 45.833 0.00 0.00 36.69 2.90
3263 3314 4.017591 TCCATTTTGTATCCCACACCATCT 60.018 41.667 0.00 0.00 36.69 2.90
3264 3315 4.097892 GTCCATTTTGTATCCCACACCATC 59.902 45.833 0.00 0.00 36.69 3.51
3265 3316 4.023291 GTCCATTTTGTATCCCACACCAT 58.977 43.478 0.00 0.00 36.69 3.55
3266 3317 3.426615 GTCCATTTTGTATCCCACACCA 58.573 45.455 0.00 0.00 36.69 4.17
3267 3318 2.758423 GGTCCATTTTGTATCCCACACC 59.242 50.000 0.00 0.00 36.69 4.16
3268 3319 2.422127 CGGTCCATTTTGTATCCCACAC 59.578 50.000 0.00 0.00 36.69 3.82
3269 3320 2.040545 ACGGTCCATTTTGTATCCCACA 59.959 45.455 0.00 0.00 34.51 4.17
3270 3321 2.422127 CACGGTCCATTTTGTATCCCAC 59.578 50.000 0.00 0.00 0.00 4.61
3271 3322 2.619332 CCACGGTCCATTTTGTATCCCA 60.619 50.000 0.00 0.00 0.00 4.37
3272 3323 2.021457 CCACGGTCCATTTTGTATCCC 58.979 52.381 0.00 0.00 0.00 3.85
3273 3324 2.021457 CCCACGGTCCATTTTGTATCC 58.979 52.381 0.00 0.00 0.00 2.59
3274 3325 2.021457 CCCCACGGTCCATTTTGTATC 58.979 52.381 0.00 0.00 0.00 2.24
3275 3326 1.958069 GCCCCACGGTCCATTTTGTAT 60.958 52.381 0.00 0.00 0.00 2.29
3276 3327 0.609681 GCCCCACGGTCCATTTTGTA 60.610 55.000 0.00 0.00 0.00 2.41
3277 3328 1.906333 GCCCCACGGTCCATTTTGT 60.906 57.895 0.00 0.00 0.00 2.83
3278 3329 1.595093 GAGCCCCACGGTCCATTTTG 61.595 60.000 0.00 0.00 32.53 2.44
3279 3330 1.304134 GAGCCCCACGGTCCATTTT 60.304 57.895 0.00 0.00 32.53 1.82
3280 3331 2.355115 GAGCCCCACGGTCCATTT 59.645 61.111 0.00 0.00 32.53 2.32
3281 3332 4.096003 CGAGCCCCACGGTCCATT 62.096 66.667 0.00 0.00 35.44 3.16
3285 3336 3.524648 TTTGTCGAGCCCCACGGTC 62.525 63.158 0.00 0.00 35.53 4.79
3286 3337 3.552384 TTTGTCGAGCCCCACGGT 61.552 61.111 0.00 0.00 0.00 4.83
3287 3338 3.047877 GTTTGTCGAGCCCCACGG 61.048 66.667 0.00 0.00 0.00 4.94
3288 3339 3.047877 GGTTTGTCGAGCCCCACG 61.048 66.667 0.00 0.00 0.00 4.94
3289 3340 0.893727 AATGGTTTGTCGAGCCCCAC 60.894 55.000 0.00 0.00 0.00 4.61
3290 3341 0.608035 GAATGGTTTGTCGAGCCCCA 60.608 55.000 0.00 0.00 0.00 4.96
3291 3342 0.608035 TGAATGGTTTGTCGAGCCCC 60.608 55.000 0.00 0.00 0.00 5.80
3292 3343 1.133025 CATGAATGGTTTGTCGAGCCC 59.867 52.381 0.00 0.00 0.00 5.19
3293 3344 1.812571 ACATGAATGGTTTGTCGAGCC 59.187 47.619 0.00 0.00 0.00 4.70
3294 3345 3.122937 GACATGAATGGTTTGTCGAGC 57.877 47.619 0.00 0.00 31.40 5.03
3298 3349 3.498397 AGTGTCGACATGAATGGTTTGTC 59.502 43.478 23.12 3.60 37.10 3.18
3299 3350 3.476552 AGTGTCGACATGAATGGTTTGT 58.523 40.909 23.12 0.00 0.00 2.83
3300 3351 5.605564 TTAGTGTCGACATGAATGGTTTG 57.394 39.130 23.12 0.00 0.00 2.93
3301 3352 6.173339 AGATTAGTGTCGACATGAATGGTTT 58.827 36.000 23.12 3.55 0.00 3.27
3302 3353 5.734720 AGATTAGTGTCGACATGAATGGTT 58.265 37.500 23.12 9.02 0.00 3.67
3303 3354 5.344743 AGATTAGTGTCGACATGAATGGT 57.655 39.130 23.12 10.39 0.00 3.55
3304 3355 7.706607 TCTTTAGATTAGTGTCGACATGAATGG 59.293 37.037 23.12 10.47 0.00 3.16
3305 3356 8.634475 TCTTTAGATTAGTGTCGACATGAATG 57.366 34.615 23.12 11.24 0.00 2.67
3306 3357 8.470805 ACTCTTTAGATTAGTGTCGACATGAAT 58.529 33.333 23.12 21.97 0.00 2.57
3307 3358 7.755373 CACTCTTTAGATTAGTGTCGACATGAA 59.245 37.037 23.12 18.31 36.66 2.57
3308 3359 7.251281 CACTCTTTAGATTAGTGTCGACATGA 58.749 38.462 23.12 9.97 36.66 3.07
3309 3360 7.443218 CACTCTTTAGATTAGTGTCGACATG 57.557 40.000 23.12 6.58 36.66 3.21
3317 3368 9.869844 CAAGTTTTCACACTCTTTAGATTAGTG 57.130 33.333 0.00 0.00 44.89 2.74
3318 3369 9.057089 CCAAGTTTTCACACTCTTTAGATTAGT 57.943 33.333 0.00 0.00 0.00 2.24
3319 3370 8.017946 GCCAAGTTTTCACACTCTTTAGATTAG 58.982 37.037 0.00 0.00 0.00 1.73
3320 3371 7.719633 AGCCAAGTTTTCACACTCTTTAGATTA 59.280 33.333 0.00 0.00 0.00 1.75
3321 3372 6.547510 AGCCAAGTTTTCACACTCTTTAGATT 59.452 34.615 0.00 0.00 0.00 2.40
3322 3373 6.064717 AGCCAAGTTTTCACACTCTTTAGAT 58.935 36.000 0.00 0.00 0.00 1.98
3323 3374 5.437060 AGCCAAGTTTTCACACTCTTTAGA 58.563 37.500 0.00 0.00 0.00 2.10
3324 3375 5.757850 AGCCAAGTTTTCACACTCTTTAG 57.242 39.130 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.