>input_sequence_53895
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-----------------------------------------------ATGGCTTCCAAGCTCCAGCTCCTGCCCTCCTTC
ATTGCCATTGTGGTTCTCGCAGCGGTTATCCACCCTTGCGCGTCCGTTGAGTTTCACCGCAAGCTCGCCAGTTGGTCTAA
TGCCGGCGCGACATGGTATGGCGCCGCTAATGGGGCTGGGAGTGATGGTACGTATGTATACTTTGCAACCCGACGGGGGT
TGTAATTCACTTCATTGATCACCATATATACTTTTAAAACTGATGTAGCAATGAGTTCAGCTAGAATCTTTGATGAAAGA
AAAGGAAAGTCAAGCTAGAATCGATCATAGCTCATGTTTTAGC-----ACCATATATATGTTTCATGCTAATTTGCATGC
CTATACAGGTGGTGCGTGCGGGTACAAGGGTGCCGTCGACCAGTCACCGTTTTCATCCATGATCGCCGCCGGCGGCCCTT
CCCTCTACGCCTCTGGCTTGGGCTGTGGATCTTGCTACCAGGTGCATGATCAGTGTCCCCTATGAATGAAACAGACTAAA
AACTG-TATAAGGTCTCGCATGCATGTGTGGTTTGTGACCTTTTGTCGTACGTAACGTA-----TTAATCTAGGTGAAAT
GCACTGGTAACGCCGCGTGCTCCAGCAGCCCGGTGACGGTCGTCATCACGGACCAGTGCCCCGGCGGCCCTTGCTTGGAA
GAGCCGCACTTCGACCTGAGCGGGACGGCGTTCGGTGCCATGGCGAAGCCCGGCCAGGCCGACCAGCTGCGCGCTGCGGG
CGTCCTCCAAATCCAGTTCACCCGGTACGCCCGCATCAGTGCACACTTTAACACTGCCCCGCTTGAAACGGCCAGGGTGC
TACACGCCACATGCACCTCACGCACCGTTGGAACACACCTAATGATTGTTACCTTTGTCGCCATGGATAGACCACGGGCC
GGCACATGTACTGTTTTCCATAGACGCGATCGATGCAACGATCGAGATGTCTCATGTCTACGTTCTTGAT---TCACCGT
GTTACTAACTGGTTTTTTCCCCTACTCCCGCATGTGATATACAGCGTGCAGTGCAACTGGGCCGGAGTGAAGCTAACCTT
CGTCGTGGACGCCGGCTCGAACCCGAACTACTTCGCCGTGCTCATCCAGTACCAAAACGGCGACGGCGACCTCTCGGCTG
TCGACCTCATGCAGAGCGGTGCTGCGGCGGCATGGGCGCCGATGCAGCACTCGTGGGGTGCTGTCTGGAAGCTCGACGCC
GGGTCGGCCCTGCAGGCGCCGCTCTCCCTCCGCCTCACGTCCAGCTCCGGCAAGAAGCTCGTCGCCAGCAACGTCATCCC
CCTTGGGTGGAAGGCCGGCTCTGCGTACCAGTCGACAGTCAATTACTAA-------------------------------
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>chr2D_1_TraesCS2D01G411000
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGCAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTCAAGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTCTGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACATTACCTGTAACGCTCCTGCTTTAT
GAACATTGAACTCCTTGTAACGTGGGCTGGCCGGGGTCCTGGCGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCTTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGTGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCGTGCGTACAGCTTCTCCATAGTTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTGTCAGACTTAGAACCACGACACCTCCGGCTCACACCGGCCAACTCTCTGAAAATTGATTGACCCTATTTCAA
AATCATTCGACTGGCATTTAGCTAAACTGAAGGTCGAACAAGTGAACTACACACAAAGGACCCGCTCTATCTACTAAGTA
CTATTGCTAGCTAGGTTGCTAGGTACGTGCCAGTTAAGTAAACATGTAG--CTAATCACATTTCAAATGGACATAACATG
TTGACTTTAGCCATGTGCCACAATCCGACGGAGCCACCGAGATCCGTTTGCATGCATGCATGTGGATGCTCACGGAGCCA
CAGGCCACCGCTTTGCTGCCTATAAATAGAGCGCATCCATACACCTAACATAACACACACCATTCCTCATCTACTTGCCT
CCT-CCAATC---CTTGCAAAGCCCACGACTCGTAGCAACTTTAGCCATGGCTTCCAAGCTCCAGCTCCTGCCCTCCTTC
ATTGCCATTGTGGTTCTCGCAGCGGTTATCCACCCTTGCGCGTCCGTTGAGTTTCACCGCAAGCTCGCCAGTTGGTCTAA
TGCCGGCGCGACATGGTATGGCGCCGCTAATGGGGCTGGGAGTGATGGTACGTATGTATACTTTGCAACCCGACGGGGGT
TGTAATTCACTTCATTGATCACCATATATACTTTTAAAACTGATGTAGCAATGAGTTCAGCTAGAATCTTTGATGAAAGA
AAAGGAAAGTCAAGCTAGAATCGATCATAGCTCATGTTTTAGC-----ACCATATATATGTTTCATGCTAATTTGCATGC
CTATACAGGTGGTGCGTGCGGGTACAAGGGTGCCGTCGACCAGTCACCGTTTTCATCCATGATCGCCGCCGGCGGCCCTT
CCCTCTACGCCTCTGGCTTGGGCTGTGGATCTTGCTACCAGGTGCATGATCAGTGTCCCCTATGAATGAAACAGACTAAA
AACTG-TATAAGGTCTCGCATGCATGTGTGGTTTGTGACCTTTTGTCGTACGTAACGTA-----TTAATCTAGGTGAAAT
GCACTGGTAACGCCGCGTGCTCCAGCAGCCCGGTGACGGTCGTCATCACGGACCAGTGCCCCGGCGGCCCTTGCTTGGAA
GAGCCGCACTTCGACCTGAGCGGGACGGCGTTCGGTGCCATGGCGAAGCCCGGCCAGGCCGACCAGCTGCGCGCTGCGGG
CGTCCTCCAAATCCAGTTCACCCGGTACGCCCGCATCAGTGCACACTTTAACACTGCCCCGCTTGAAACGGCCAGGGTGC
TACACGCCACATGCACCTCACGCACCGTTGGAACACACCTAATGATTGTTACCTTTGTCGCCATGGATAGACCACGGGCC
GGCACATGTACTGTTTTCCATAGACGCGATCGATGCAACGATCGAGATGTCTCATGTCTACGTTCTTGAT---TCACCGT
GTTACTAACTGGTTTTTTCCCCTACTCCCGCATGTGATATACAGCGTGCAGTGCAACTGGGCCGGAGTGAAGCTAACCTT
CGTCGTGGACGCCGGCTCGAACCCGAACTACTTCGCCGTGCTCATCCAGTACCAAAACGGCGACGGCGACCTCTCGGCTG
TCGACCTCATGCAGAGCGGTGCTGCGGCGGCATGGGCGCCGATGCAGCACTCGTGGGGTGCTGTCTGGAAGCTCGACGCC
GGGTCGGCCCTGCAGGCGCCGCTCTCCCTCCGCCTCACGTCCAGCTCCGGCAAGAAGCTCGTCGCCAGCAACGTCATCCC
CCTTGGGTGGAAGGCCGGCTCTGCGTACCAGTCGACAGTCAATTACTAATTCTCGTACGAGTTTTCTATGTACTATTGTA
TGTCAGTATTTGCGTGTCGGTTGCACTGCATGCACGGGATGGTGCAACATGCATGGAACCTATGTAGTATGTGTGTGTGC
GTGTGGTAGTTCGATGTGTAGCGCGCAGCGCTACTACCAAGAACTGAAATAA---TGGCGAGACGGGCGTTGAGGAGGAG
GCGCTGCA--TGGGTATAGATCTCCCCTGTTGGCCGT----------TTTATGTGGACGTGTAAAACATGTA-TGACAGC
TCGGTGCACTCCATCAGTGCCTAATACGACGTGCAATATATATG--------TTAATGCATGCGATGTGCTGCGTACCAG
TGTATGTTTAATCTTGTTTATCCATGAATGTTCCTAATCAATATACAGCTCTAGAGTTCGGAATTTTTTATTTTATTTTC
TAGAACTATTTATTTTTCTTAACTAGACATGGAAACTATTGAAAATGCCTGCAATGGTACAAGGCGACAAAAGGGTGCAA
CAATCAAGTCACATCAGTTTGTATGATCAGTTGGATCAGGATGGGCCGTTTTCTCAGGCTCAAATTAAAAAAATATTGAT
TAAAACATGTTTTTTAAGT---TAATAATGTATTTAAAAAA-TTCAATGTGTATAAATAAATGTTTCACATGTATATAAA
AG-TTTACAACGCGTGTTGAGAAAATTAGACAAGTACTGGAAAAAGGAAAGAAGAAAAAATAATAAAAGAAAAAGAAAAT
CCGAAGAAGACAATGAAAACCATAACTAAAACACACAAAATGGAAGGAAAAGAAAAAACAATGAAAAATAAAGAAACCCG
ATGAAAGTCGTAATGAAAAACACAGAAAAAGAAATAACAACAAGAATATTGAAAACCGGACCAGTCTAGCTAGTTTTTTT
AGGGGTCAAACCAAGCTTTATTCATCATAGTCCAGATGGTGTGGGATACAAAATGGACCGTGGGGCTCGACAAACCATTC
ATGTCGACACTAATCTAAAGAGTGTGAAAACTTGGCTA
>chr2D_1
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGTAATAGGCCTGACCTATACCTCCTACCCAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTCAGGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGCAATCCACTCGACCTACCATTCACTC
TGAGA-CCCCCCTTTGTTTATGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACATTACCTGTAACACTCCTACTTTAT
GAACATTGAACTCCTTGTAACGTGGGCTGGCT-GGGTCCTGGCGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCTTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCGTGCGTACAGCTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCCACTGTCAGACTCAGAACCACGACA---------------------------------------------------
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>chr4D_1
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGCAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTCAAGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTCTGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCGGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACGTTACCTGTAACGCTCCTGCTTTAT
GAACATTGAACTCCTTGTAACATGGGCTGGCCGGGGTCCTGGCGCACTTTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCTGAGACATAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCGTGCGTACAGCTTCTCCATGGCTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTGTCAGACTTAGAACCACGACA---------------------------------------------------
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>chr4D_1
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGTAATAGGCCTGACCTATAC---CTACCTAAGGTCCTTATCCT
AGAAGCAAAGAGGTTCAAGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTCTGTCACTCGACCACTAAACCACTTGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACGTTACCTGTAACGCTCCTGCTTTAT
GAACATTGAACTCCTTGTAACGTGGGCTCGCCGGGGTCCTGACGCACTCTATATAAGCCAACCCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTTGTGCCTACAGCTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTGTCAGACTTAGAACCACGACA---------------------------------------------------
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--------------------------------GCCACCGAGCTC------------------------------------
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>chr6D_1
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGCAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTCAAGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTCCGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGTCGTTACCTGTAACGCTCCTGCTTTAT
GAACATTAAACTCCTTGTAACGTGGGCTGGCCGGGGTCCTGGTGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACTGCCTCCGGGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGGAAAACTCGTGCGTACAACTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTGCCAGACTTAGAACCACGACA---------------------------------------------------
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>chr6D_1
TCGGGGGCTCATGATGAGGACATAGACCTGGGGTAGGGTAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCGAAGAGGTTCAAGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTACTCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTATGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACGTTACATGTAACGCTCCTGCTTTAT
GAACATTGAACTCCTTGTAACGTGGGCTGGCCGGGGTCCTGGCGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCTA-TAACACACACGCATATAATCCAGCCGACCGCCTCCGAGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCGTGCGTACAGCTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTATCAGACTTAGAACCACGACA---------------------------------------------------
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>chrUn_1
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGTAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTCAGGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGACCCCCCCTTTGTTTATGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CAGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACGTTACCTGTAACGCTCCTACTTTAT
GAACATTGAACTCCTTGTAACGTGGGCTGGCTGGGGTCCTGGCGCACTCTATATAAGCCACACCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGAGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCGTGCGTACAGCTTCTCCATAGCCAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTGTCAGACTTAGAACCACGACACC-------------------------------------------------
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>chr5D_1
TCGGGGGCTAATGATGAGGACATAGACCTGGGGTAGGGTAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTCAAGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTGCCATTCACTC
GGGGA-CCCCCCTTTGTTTATGTCACTCGACCACTAAACCACTCAACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACGTTACCTGTAACGCTCCTGCTTTAT
GAACATTGAACTCCTTGTAATGTGGGCTGGCCGAGGTCCTCGCGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCGTGCGTACGGCTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCCCC
ATTCTACTATCAGACTTAGAACCACGACA---------------------------------------------------
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>chr5D_1
TCGGGGGCTAATGTTGAGGACATAAACCTGGGGTAGGGTAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTTAGGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTATGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACATTACCTGTAACGCTCCTTCTTTAT
GAACATTGAACTCCTTGTAACGT-GGCTGGCTGGGGTCCTGGCGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCATGCGTACAGCTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCC-C
ATTCTACTGTCAGACTTAGAACCACGACAC--------------------------------------------------
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>chr5D_1
TCGGGGGCTAATGTTGAGGACATAAACCTGGGGTAGGGTAATAGGCCTGACCTATACCTCCTACCTAAGGTCCTTGTCCT
AGAAGCAAAGAGGTTTAGGAGTAAATAGAGGGGACCCAACAAAGGTGTCGAGTGTAATCCACTCGACCTACCATTCACTC
GGAGA-CCCCCCTTTGTTTATGTCACTCGACCACTAAACCACTCGACGTGCAGAAGACCTAAAGCCACTCCGCGCAGCAA
CGGTCGGGCATTTACTCTTAGACTTAATAGTCATTTATATTACTTTACTACAGACATTACCTGTAACGCTCCTTCTTTAT
GAACATTGAACTCCTTGTAACATGGGCTGGCTGGGGTCCTGGCGCACTCTATATAAGCCACCCCCCTCCACTGGCACAAG
GGTTCGCACCCCCTGTAACACACACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGAGACGTAGGGCTGTTACTTCCT
CCGAGAAGGGCCTGAACTCGTAAAACTCATGCGTACAGCTTCTCCATAGCTAGGACCTTGCCTTTACATCCCTACCCC-C
ATTCTACTGTCAGACTTAGAACCACGACAC--------------------------------------------------
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>chr2B_669
AAGGAT--------------------------------------------------------------------------
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----------------------------------CGAACAAGTGAGCTCCACACAAAGTACCCGCCCTATGTACTACTAC
C----GCTAGCTAGGTTGCTAGGTACGTGCTAGTTAAGTAAATATGTACTCCTAATCACATTTCAAATGGACATAACATG
TTGACTTTAGCCATGTGCCACAATCCGACGGAGCCACCGAGATCCGTTTGCATGCATGCATGTGGATGCTCACGGAGCCA
CAGGCCACCGTTTTGCTGCCTATAAATAGATCGCATCCATACACCCAACATAACACACACCATTCCTCATCTACTTGCCT
GCTCCCAATC---CTTGCAAAGCCCACGACTCATAGCAACTTTAGCGATGGCTTCCAAGCTCCAGCTCCCGCGCTCCTTC
ATTGCAATTGTGGTTCTCGCGACGGTTATCCACCCTTGCACATCCGTTGAGTTTCACCGCAAGCTCGCCAGTTGGTCTAA
TGCCGGCGCGACATGGTATGGCGCCGCTAATGGGGCTGGGAGTGATG----GTATGTATACTTTGCAAACTGATGAGGGT
TGTAATTCACTTCATTGATCACCATATTTACTTTCCAAACTGATCTATG-TTAAAAAAGAAAGTA---------------
------TAGTCAAGCTAGAATCGATCATAGCTCATGTTTTAACATAAAATCATACATA----TCATGCTAATTTACATAC
GTGTACAGGTGGTGCGTGCGGGTACAAGGGCGCCGTCGACCAGCCACCGTTTTCGTCCATGATCGCCGCCGGCGGCCCTT
CCCTCTACGCATCTGGCCTTGGCTGTGGATCTTGCTACCAGGTGCATGCATGATCGGTGCCCCTTATGAAACAGACTAAT
AAAAACTATTAGGTCTAGCATGCATGCGTGGTTTGTGACCTTTTGTCCT-----ACGTA-----TTAATTTAGGTGAAAT
GCACTGGTAACGCCGCGTGCTCGAGCAGCCCGGTGACGGTCGTCATCACAGACCAGTGCCCCGGCGGCCCTTGCTTGGAA
GAGCCGCACTTCGACCTGAGCGGGACGGCGTTCGGTGCCATGGCGAAGCCCGGCCAGGCCGACCAGCTGCGCGCCGCGGG
TGTCCTCCAAATCCAGTTCACCCGGTACGCCCGCATCAGTGCACACTCTAACACTGCCCCGCTTGAAACGGCCAGGGTGC
TACATGCCACATGCACCTCACGCGCCGTTGGAGCACACCTAATGATTGTTACCTTTGTCGCCATGGATAGACCACGGGCC
GGCACATGTACTGTTTTCCATGCATAACTGAGATGCATCGATCGAGCTGTGTC-----------CTTGAT---CCTCCGT
GTTACTAACTGGTTTTTCATTACT---CCGCATGTCATGTACAGAGTGCAGTGCAACTGGGATGGAGTGAAGCTAACCTT
CGTCGTGGACGCCGGCTCGAACCCGAACTACTTGGCCGTGCTCGTCCAGTACCAGAACGGCGACGGGAACCTCTCGGGCG
TCGAGCTCATGCAGAGCGGTGCGGCGGCGGCATGGACGCCGATGCAGCACTCGTGGGGCGCTGTCTGGAAGCTCGACGCC
GGGTCGGCGCTGCAGGCGCCGCTCTCCCTCCGCCTCACGTCCAGCTCTGGCAAGAAGCTCGTCGCCAGCAACGTCATCCC
GCTTGGGTGGAAGGCCGGCTCTGCGTACCAGTCGGCGGTCAATTACTAATCCACGG------------------------
----------------------------------CGAGATGGTGCAACATG------------------TGTGTGTGTGT
GTGTGGTAGTTCGATGTGTAGCGCGCTGTGCTACTACGAAGAACTGAAATAA---CGGCGAGACGGCCGTTGAGGAGGAG
GCGCTGCAAATGGGTATAGATCTCCCCTGTTTGCCGTTTAGTCAATGTTTATGTGGACGTGTAAAACATGTAATGACAGC
TCGCTGCACTCTATCAGTGCCTAAT---ACGTGCAATATATATGTGGTTTTGTTAATGCATGCGATGTGCTGCGTACCAG
TGTATGTTTAATTTAGTTTATCCATGCATGTTCCTAGTCAATATACAGCCCTATAGTTCGGAATTTTTTATTTTATTTCC
TAGAACTATTTATTTTTCTTAACTAGACATGGAAACTATTGAAAATGCCTCGAATGGTACAAGGCGACAAAAGGGTGCAA
CAATCAAGTCACATCAGTTTGTATGATCATTTGGGTCAGGATGGGCAGCTTTCTCAGGCTCAAATTCAAAAAAAA-TGTT
TAAAACATGTATTTTAAAAATGTAATAATGTATTTAAAAATGTTCATTGAGTACAAACAAATGTTTCAGAAGTATATAAA
TTTTTTACAATGTGTGTTGAAAAAGTTAGACAAGTATCAAAAAAAAAGATAAT-----------------AAAATAAAAT
CAGAAGAAGGCAATGAAAACCATAAAGAAAACCTACAAAATAGAAGGAAAAA-------AATGAAAACTAAAGAAAA---
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>chr2A_669
AAGGAT--------------------------------------------------------------------------
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----------------------------------CGAACAAGTGAGCTCCACACAAAGTACCCGCCCTATGTACTACTAC
C----GCTAGCTAGGTTTCTAGGTACGTGCCAGTTAAGTAAATATGTAG--CTAATTGCATTTCAAATGGACATAACATG
TTGACTTTAGCCATGTGCCACAATCCAACGGAGGCACTGAGATCCGTCTGCATGCATGCATGTGGATGCTCACGGAGCCA
CAGGCCACCGCTTTGCTGCCTATAAATAGAGCACATCCATACGCCCAACATAACACACACCATTCCTCATAGCAACTTGC
AAGCCTCACTAAACTTGCAAAGCCCACGACTCGTAGCAACTTTAGCCATGGCTTCCAAGCTCCAGCTCCTGCCCTCCTTC
ATTGCCATTGTGGTTCTCGCGGCGGTTATCCACCCTTGCGCATCCGTTGAGTTTCACCGCAAGCTCGCCAGTTGGTCTAA
TGCCGGCGCGACATGGTATGGCGCTGCTAATGGCGCCGGGAGTGATGGTATGC---------------------------
---------------------------ATACTTCCCAAACTGATGTATG-ATAAGTTAAGCTAGAATCTTTGATGAAAAA
AGTATGTAGTCAAGCTAGCATCGATCATAGTTCACGGTTTAGC-----ATCATATGTA----CCGTTCTAATTTACATAC
ATATACAGGTGGGGCGTGCGGGTACAAGGGTGCCGTCGACCAGCCACCGTTTTCGTCCATGATCGCCGCCGGCGGCCCTT
CCCTCTACGCCTCTGGCTTGGGCTGTGGATCTTGCTACCAGGTGCACGATCAGTGTCCCCTATGAA----ACAGACTGAA
AACTA-TACCAGGTCTCGCATGCATGTGTGGTTTGTGACCTTTTGTCGT-----ACGTAACGTGTTAATCTAGGTGAAAT
GCACTGGTAACGCCGCGTGCTCGAGCAGCCCGGTGACGGTCGTCATCACGGACCAGTGCCCCGGCGGCCCTTGCTTGGAA
GAGCCGCACTTCGACCTGAGCGGGACGGCGTTCGGTGCCATGGCGAAGCCCGGCCAGGCCGACCAGCTGCGTGCTGCCGG
CGTCCTCCAAATCCAGTTCACCCGGTACGCCCGCATCAGCGCACACTCTAACACTGCCCCGCTTGAAACGGCCAGGGTGC
TACACGCCACATGCACCTCACGCACCGTTGGAACACACCTAATGATTATTACCTTTGTCACCATAGATAGACCACGGGCC
GGCACATGTACTGTTTTCCATGCATAACTGCGATGCATCGATCGAGCTGTGTC-----------CTTGATGATCCTCCGT
GGTAATAACTGGTTTTTCATTACT---CCGCATGTGATTTACAGCGTGCAGTGCAACTGGGCTGGAGTGAAGCTAACCTT
CATCGTGGACGCCGGCTCGAACCCGAACTACTTCGCCGTGCTCATCCAGTACCAGAACGGCGACGGGGACCTCTCGGCCG
TCGACCTCATGCAGAGCGGTGCCGCGGCGGCATGGGAGCCCATGCAGCACTCGTGGGGCGCTGTCTGGAAGCTCAACGCC
GGGTCGGCCCTGCAGGCGCCGCTCTCCCTCCGCCTCACGTCCAGCTCTGGCAAGAAGCTCGTCGCCAGCAACGTCATCCC
CCTCGGGTGGAAGGCCGGCTCTGCGTACCAGTCGGCGGTCAATTACTAATC--CGTATGGGTTTTCTATATATACTTGTA
TTGGAT--------------------TGCATGCACGAGATGGTGCAACATGCATGCAACCTATGTAC----TGTGTGTGC
GTGTG----TTCGATGTGTAGCGCGCAGTGCTACTAGGAAGAACTGAAATAACGGCGGCGAGACGGCCGTTGAGGAGGAG
GCGCTGCA--TGGGTATGGTTCTCCCCTGTTGGCCGTTTAGTCAATGTTTATGTGGACGTGTAAAACATGTAATGACAGC
TCGGTGCACTCTATCAGTGCCTAAT---ACGTGCAATATATATG------------------------------------
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>SNPs
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----------------------------------------------------------S---------------------
-------------------------------------------------S------------------------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--S---------S------S----S-----SSSS
-SSSS-------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
S-------------------------------------------------------------------------------
--------------------S--------------------S--------------------------------------
--------------------------------------------------S-----------------S-S--S-S----
----------------------------------SS-----------SSS--S----S--------------------S-
-SSSSSS------------------------------------------S--------SSSS------------S---S-
S------------------------------------------S----------S-------------------------
--------------------------------------------------------------------------------
----S----S---------------------------------------SSSSS--------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
---------------------SS-SSSSSS-------S--------S---S--SSSSSSSSSSS---------S-S----
-----------------SSSSSSSSSS-----------S-----------------------S-----------------
------------------------------------------------------S-----------S-----------S-
----------------------S-----------------------------------S---------------------
-----------------------------------------------S--------------------------------
----------------------------------S-S-------------S-S----S-S---------S--SSS-----
-SSS-SSSSSSSSSSSSSSSSSSSSS----------S------------------S----------SSS-----------
----------------------------S--------S-----------------S----------S-------------
--------------------------------------------------------------------------------
-----------S-------------SSS----------------------------------------------------
------------S-S-----------S---------S------------S---S------------------------S-
--------------------------------------------------SS----------------------------
-----------------------------S----S-----------S-S-----------------S------S-S--S-
----------S------SS---------------------S-----S--S---S---S----------S-S---------
SS--------S-S-------S---S-----------SSSS-----SSS-SS-SSSSSSSSSSSSSSSSSS----S-----
-S-------S---------------SS-----SS-------S---------SSSSSSSS--------S--------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_706
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----------------------------------------------CTACACACAAAGGACCCGCT--------------
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>reverse_1808
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-----------------------------------------------TTAACACTGCCCCGCTTGAA-------------
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>forward_1415
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-----------------------------------TCGACCAGTCACCGTTTTCA-------------------------
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>reverse_2468
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-------------------------------------------------------------------TATGTGTGTGTGC
GTGTGGT-------------------------------------------------------------------------
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--------------------------------------
