Multiple sequence alignment - TraesCS2D01G394000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G394000 chr2D 100.000 2614 0 0 1 2614 503909395 503906782 0.000000e+00 4828.0
1 TraesCS2D01G394000 chr2D 82.540 252 26 10 124 358 82661427 82661177 3.410000e-49 206.0
2 TraesCS2D01G394000 chr2B 91.123 1701 91 24 922 2601 592563699 592562038 0.000000e+00 2250.0
3 TraesCS2D01G394000 chr2A 83.710 1283 113 55 983 2237 649628875 649627661 0.000000e+00 1123.0
4 TraesCS2D01G394000 chr2A 81.847 314 37 9 381 683 649629753 649629449 2.010000e-61 246.0
5 TraesCS2D01G394000 chr2A 77.778 369 62 16 2242 2598 755332302 755332662 2.640000e-50 209.0
6 TraesCS2D01G394000 chr2A 89.189 74 5 2 913 984 649628981 649628909 3.580000e-14 89.8
7 TraesCS2D01G394000 chr3A 84.800 250 23 9 124 358 531681470 531681221 1.210000e-58 237.0
8 TraesCS2D01G394000 chr3A 76.648 364 70 10 2248 2601 561052931 561053289 1.240000e-43 187.0
9 TraesCS2D01G394000 chr3D 81.469 286 44 7 2248 2525 463681506 463681790 2.620000e-55 226.0
10 TraesCS2D01G394000 chr3D 79.872 313 56 5 2294 2601 140411992 140411682 3.390000e-54 222.0
11 TraesCS2D01G394000 chr3D 76.816 358 64 15 2250 2595 598188827 598189177 1.600000e-42 183.0
12 TraesCS2D01G394000 chr6D 79.553 313 55 5 2294 2601 262746280 262746588 5.670000e-52 215.0
13 TraesCS2D01G394000 chr6B 77.747 364 72 7 2248 2603 258004795 258005157 5.670000e-52 215.0
14 TraesCS2D01G394000 chr4A 82.609 253 26 5 124 358 16202211 16202463 9.480000e-50 207.0
15 TraesCS2D01G394000 chr1D 78.012 332 61 10 2261 2584 461003000 461003327 5.710000e-47 198.0
16 TraesCS2D01G394000 chr4B 82.843 204 26 5 124 321 475196879 475196679 9.620000e-40 174.0
17 TraesCS2D01G394000 chr4D 82.843 204 23 9 124 320 386998752 386998554 3.460000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G394000 chr2D 503906782 503909395 2613 True 4828.000000 4828 100.000000 1 2614 1 chr2D.!!$R2 2613
1 TraesCS2D01G394000 chr2B 592562038 592563699 1661 True 2250.000000 2250 91.123000 922 2601 1 chr2B.!!$R1 1679
2 TraesCS2D01G394000 chr2A 649627661 649629753 2092 True 486.266667 1123 84.915333 381 2237 3 chr2A.!!$R1 1856

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.037590 TGGGAATTGTGGAACGAGGG 59.962 55.0 0.0 0.0 42.39 4.30 F
802 1108 0.043737 CTCGATCTCACGTCGACTCG 60.044 60.0 14.7 14.5 42.57 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1089 1456 0.966920 TCTCGGTCTCTTGGTTGGAC 59.033 55.0 0.0 0.0 0.0 4.02 R
2469 2864 0.678366 ACGGTTGTTGTTCTGGTGCA 60.678 50.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.182996 GGGGGAGGTTGGTGTGGT 61.183 66.667 0.00 0.00 0.00 4.16
23 24 2.115266 GGGGAGGTTGGTGTGGTG 59.885 66.667 0.00 0.00 0.00 4.17
24 25 2.115266 GGGAGGTTGGTGTGGTGG 59.885 66.667 0.00 0.00 0.00 4.61
25 26 2.597510 GGAGGTTGGTGTGGTGGC 60.598 66.667 0.00 0.00 0.00 5.01
26 27 2.978010 GAGGTTGGTGTGGTGGCG 60.978 66.667 0.00 0.00 0.00 5.69
29 30 3.216292 GTTGGTGTGGTGGCGCTT 61.216 61.111 7.64 0.00 0.00 4.68
30 31 1.894756 GTTGGTGTGGTGGCGCTTA 60.895 57.895 7.64 0.00 0.00 3.09
31 32 1.599518 TTGGTGTGGTGGCGCTTAG 60.600 57.895 7.64 0.00 0.00 2.18
32 33 2.746277 GGTGTGGTGGCGCTTAGG 60.746 66.667 7.64 0.00 0.00 2.69
33 34 2.746277 GTGTGGTGGCGCTTAGGG 60.746 66.667 7.64 0.00 0.00 3.53
34 35 3.246112 TGTGGTGGCGCTTAGGGT 61.246 61.111 7.64 0.00 0.00 4.34
35 36 2.033602 GTGGTGGCGCTTAGGGTT 59.966 61.111 7.64 0.00 0.00 4.11
36 37 1.602605 GTGGTGGCGCTTAGGGTTT 60.603 57.895 7.64 0.00 0.00 3.27
37 38 1.302993 TGGTGGCGCTTAGGGTTTC 60.303 57.895 7.64 0.00 0.00 2.78
38 39 1.302993 GGTGGCGCTTAGGGTTTCA 60.303 57.895 7.64 0.00 0.00 2.69
39 40 1.583495 GGTGGCGCTTAGGGTTTCAC 61.583 60.000 7.64 2.93 0.00 3.18
40 41 1.302993 TGGCGCTTAGGGTTTCACC 60.303 57.895 7.64 0.00 37.60 4.02
41 42 1.302993 GGCGCTTAGGGTTTCACCA 60.303 57.895 7.64 0.00 41.02 4.17
42 43 1.583495 GGCGCTTAGGGTTTCACCAC 61.583 60.000 7.64 0.00 41.02 4.16
43 44 1.583495 GCGCTTAGGGTTTCACCACC 61.583 60.000 0.00 0.00 41.02 4.61
49 50 4.373771 GGTTTCACCACCCGAGTC 57.626 61.111 0.00 0.00 38.42 3.36
50 51 1.666872 GGTTTCACCACCCGAGTCG 60.667 63.158 5.29 5.29 38.42 4.18
51 52 2.029964 TTTCACCACCCGAGTCGC 59.970 61.111 7.12 0.00 0.00 5.19
52 53 3.524648 TTTCACCACCCGAGTCGCC 62.525 63.158 7.12 0.00 0.00 5.54
82 83 3.077556 CACGAGGAGTGGGGAGGG 61.078 72.222 0.00 0.00 46.77 4.30
83 84 4.400251 ACGAGGAGTGGGGAGGGG 62.400 72.222 0.00 0.00 0.00 4.79
85 86 4.741239 GAGGAGTGGGGAGGGGCA 62.741 72.222 0.00 0.00 0.00 5.36
86 87 4.285790 AGGAGTGGGGAGGGGCAA 62.286 66.667 0.00 0.00 0.00 4.52
87 88 4.048470 GGAGTGGGGAGGGGCAAC 62.048 72.222 0.00 0.00 0.00 4.17
99 100 2.349755 GGCAACCCGGTCTTGCTA 59.650 61.111 25.34 0.00 43.08 3.49
100 101 1.077716 GGCAACCCGGTCTTGCTAT 60.078 57.895 25.34 0.00 43.08 2.97
101 102 0.679960 GGCAACCCGGTCTTGCTATT 60.680 55.000 25.34 0.00 43.08 1.73
102 103 0.451783 GCAACCCGGTCTTGCTATTG 59.548 55.000 21.35 5.93 40.79 1.90
103 104 1.821216 CAACCCGGTCTTGCTATTGT 58.179 50.000 0.00 0.00 0.00 2.71
104 105 2.159382 CAACCCGGTCTTGCTATTGTT 58.841 47.619 0.00 0.00 0.00 2.83
105 106 2.109425 ACCCGGTCTTGCTATTGTTC 57.891 50.000 0.00 0.00 0.00 3.18
106 107 1.349688 ACCCGGTCTTGCTATTGTTCA 59.650 47.619 0.00 0.00 0.00 3.18
107 108 2.224670 ACCCGGTCTTGCTATTGTTCAA 60.225 45.455 0.00 0.00 0.00 2.69
108 109 2.817258 CCCGGTCTTGCTATTGTTCAAA 59.183 45.455 0.00 0.00 0.00 2.69
109 110 3.254657 CCCGGTCTTGCTATTGTTCAAAA 59.745 43.478 0.00 0.00 0.00 2.44
110 111 4.082245 CCCGGTCTTGCTATTGTTCAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
111 112 5.469479 CCGGTCTTGCTATTGTTCAAAATT 58.531 37.500 0.00 0.00 0.00 1.82
112 113 5.925969 CCGGTCTTGCTATTGTTCAAAATTT 59.074 36.000 0.00 0.00 0.00 1.82
113 114 6.423604 CCGGTCTTGCTATTGTTCAAAATTTT 59.576 34.615 0.00 0.00 0.00 1.82
114 115 7.359181 CCGGTCTTGCTATTGTTCAAAATTTTC 60.359 37.037 0.00 0.00 0.00 2.29
115 116 7.501515 GGTCTTGCTATTGTTCAAAATTTTCG 58.498 34.615 0.00 0.00 0.00 3.46
116 117 7.381139 GGTCTTGCTATTGTTCAAAATTTTCGA 59.619 33.333 0.00 0.01 0.00 3.71
117 118 8.207906 GTCTTGCTATTGTTCAAAATTTTCGAC 58.792 33.333 0.00 3.59 0.00 4.20
118 119 7.381139 TCTTGCTATTGTTCAAAATTTTCGACC 59.619 33.333 0.00 0.00 0.00 4.79
119 120 6.744112 TGCTATTGTTCAAAATTTTCGACCT 58.256 32.000 0.00 0.00 0.00 3.85
120 121 7.877003 TGCTATTGTTCAAAATTTTCGACCTA 58.123 30.769 0.00 0.00 0.00 3.08
121 122 8.519526 TGCTATTGTTCAAAATTTTCGACCTAT 58.480 29.630 0.00 1.50 0.00 2.57
122 123 9.997482 GCTATTGTTCAAAATTTTCGACCTATA 57.003 29.630 0.00 2.44 0.00 1.31
147 148 5.006386 AGGCTATGGCTTCTATTACAATGC 58.994 41.667 0.00 0.00 33.67 3.56
148 149 5.006386 GGCTATGGCTTCTATTACAATGCT 58.994 41.667 0.00 0.00 38.73 3.79
149 150 5.474876 GGCTATGGCTTCTATTACAATGCTT 59.525 40.000 0.00 0.00 38.73 3.91
150 151 6.376978 GCTATGGCTTCTATTACAATGCTTG 58.623 40.000 0.00 0.00 35.22 4.01
151 152 6.016777 GCTATGGCTTCTATTACAATGCTTGT 60.017 38.462 0.00 6.74 40.41 3.16
152 153 6.780457 ATGGCTTCTATTACAATGCTTGTT 57.220 33.333 6.82 0.00 42.22 2.83
153 154 6.588719 TGGCTTCTATTACAATGCTTGTTT 57.411 33.333 6.82 0.31 42.22 2.83
154 155 6.620678 TGGCTTCTATTACAATGCTTGTTTC 58.379 36.000 6.82 0.00 42.22 2.78
155 156 6.434028 TGGCTTCTATTACAATGCTTGTTTCT 59.566 34.615 6.82 0.00 42.22 2.52
156 157 7.039784 TGGCTTCTATTACAATGCTTGTTTCTT 60.040 33.333 6.82 0.00 42.22 2.52
157 158 7.274250 GGCTTCTATTACAATGCTTGTTTCTTG 59.726 37.037 6.82 0.00 42.22 3.02
158 159 7.274250 GCTTCTATTACAATGCTTGTTTCTTGG 59.726 37.037 6.82 0.00 42.22 3.61
159 160 7.156876 TCTATTACAATGCTTGTTTCTTGGG 57.843 36.000 6.82 0.00 42.22 4.12
160 161 6.945435 TCTATTACAATGCTTGTTTCTTGGGA 59.055 34.615 6.82 0.00 42.22 4.37
161 162 5.860941 TTACAATGCTTGTTTCTTGGGAA 57.139 34.783 6.82 0.00 42.22 3.97
162 163 4.961438 ACAATGCTTGTTTCTTGGGAAT 57.039 36.364 0.00 0.00 42.22 3.01
163 164 5.294734 ACAATGCTTGTTTCTTGGGAATT 57.705 34.783 0.00 0.00 42.22 2.17
164 165 5.058490 ACAATGCTTGTTTCTTGGGAATTG 58.942 37.500 0.00 0.00 42.22 2.32
165 166 4.961438 ATGCTTGTTTCTTGGGAATTGT 57.039 36.364 0.00 0.00 0.00 2.71
166 167 4.057406 TGCTTGTTTCTTGGGAATTGTG 57.943 40.909 0.00 0.00 0.00 3.33
167 168 3.181467 TGCTTGTTTCTTGGGAATTGTGG 60.181 43.478 0.00 0.00 0.00 4.17
168 169 3.069443 GCTTGTTTCTTGGGAATTGTGGA 59.931 43.478 0.00 0.00 0.00 4.02
169 170 4.442753 GCTTGTTTCTTGGGAATTGTGGAA 60.443 41.667 0.00 0.00 0.00 3.53
170 171 4.664150 TGTTTCTTGGGAATTGTGGAAC 57.336 40.909 0.00 0.00 37.35 3.62
171 172 3.067461 TGTTTCTTGGGAATTGTGGAACG 59.933 43.478 0.00 0.00 42.39 3.95
172 173 2.940994 TCTTGGGAATTGTGGAACGA 57.059 45.000 0.00 0.00 42.39 3.85
173 174 2.778299 TCTTGGGAATTGTGGAACGAG 58.222 47.619 0.00 0.00 42.39 4.18
174 175 1.812571 CTTGGGAATTGTGGAACGAGG 59.187 52.381 0.00 0.00 42.39 4.63
175 176 0.037590 TGGGAATTGTGGAACGAGGG 59.962 55.000 0.00 0.00 42.39 4.30
176 177 1.313091 GGGAATTGTGGAACGAGGGC 61.313 60.000 0.00 0.00 42.39 5.19
177 178 0.608035 GGAATTGTGGAACGAGGGCA 60.608 55.000 0.00 0.00 42.39 5.36
178 179 1.243902 GAATTGTGGAACGAGGGCAA 58.756 50.000 0.00 0.00 42.39 4.52
179 180 1.818674 GAATTGTGGAACGAGGGCAAT 59.181 47.619 0.00 0.00 42.39 3.56
180 181 1.176527 ATTGTGGAACGAGGGCAATG 58.823 50.000 0.00 0.00 42.39 2.82
181 182 1.523154 TTGTGGAACGAGGGCAATGC 61.523 55.000 0.00 0.00 42.39 3.56
182 183 1.971167 GTGGAACGAGGGCAATGCA 60.971 57.895 7.79 0.00 0.00 3.96
183 184 1.228398 TGGAACGAGGGCAATGCAA 60.228 52.632 7.79 0.00 0.00 4.08
184 185 1.243342 TGGAACGAGGGCAATGCAAG 61.243 55.000 7.79 0.00 0.00 4.01
185 186 1.508088 GAACGAGGGCAATGCAAGG 59.492 57.895 7.79 0.00 0.00 3.61
186 187 0.960364 GAACGAGGGCAATGCAAGGA 60.960 55.000 7.79 0.00 0.00 3.36
187 188 0.323725 AACGAGGGCAATGCAAGGAT 60.324 50.000 7.79 0.00 0.00 3.24
188 189 0.749454 ACGAGGGCAATGCAAGGATC 60.749 55.000 7.79 0.00 0.00 3.36
189 190 0.465097 CGAGGGCAATGCAAGGATCT 60.465 55.000 7.79 0.00 0.00 2.75
190 191 1.772836 GAGGGCAATGCAAGGATCTT 58.227 50.000 7.79 0.00 0.00 2.40
191 192 1.680207 GAGGGCAATGCAAGGATCTTC 59.320 52.381 7.79 0.00 0.00 2.87
192 193 1.006281 AGGGCAATGCAAGGATCTTCA 59.994 47.619 7.79 0.00 0.00 3.02
193 194 1.826720 GGGCAATGCAAGGATCTTCAA 59.173 47.619 7.79 0.00 0.00 2.69
194 195 2.417787 GGGCAATGCAAGGATCTTCAAC 60.418 50.000 7.79 0.00 0.00 3.18
195 196 2.231964 GGCAATGCAAGGATCTTCAACA 59.768 45.455 7.79 0.00 0.00 3.33
196 197 3.306225 GGCAATGCAAGGATCTTCAACAA 60.306 43.478 7.79 0.00 0.00 2.83
197 198 3.676646 GCAATGCAAGGATCTTCAACAAC 59.323 43.478 0.00 0.00 0.00 3.32
198 199 4.796946 GCAATGCAAGGATCTTCAACAACA 60.797 41.667 0.00 0.00 0.00 3.33
199 200 5.291178 CAATGCAAGGATCTTCAACAACAA 58.709 37.500 0.00 0.00 0.00 2.83
200 201 4.305989 TGCAAGGATCTTCAACAACAAC 57.694 40.909 0.00 0.00 0.00 3.32
201 202 3.953612 TGCAAGGATCTTCAACAACAACT 59.046 39.130 0.00 0.00 0.00 3.16
202 203 4.036734 TGCAAGGATCTTCAACAACAACTC 59.963 41.667 0.00 0.00 0.00 3.01
203 204 4.776743 CAAGGATCTTCAACAACAACTCG 58.223 43.478 0.00 0.00 0.00 4.18
204 205 4.073293 AGGATCTTCAACAACAACTCGT 57.927 40.909 0.00 0.00 0.00 4.18
205 206 4.058817 AGGATCTTCAACAACAACTCGTC 58.941 43.478 0.00 0.00 0.00 4.20
206 207 3.120991 GGATCTTCAACAACAACTCGTCG 60.121 47.826 0.00 0.00 0.00 5.12
207 208 3.153676 TCTTCAACAACAACTCGTCGA 57.846 42.857 0.00 0.00 0.00 4.20
208 209 2.855963 TCTTCAACAACAACTCGTCGAC 59.144 45.455 5.18 5.18 0.00 4.20
209 210 2.572191 TCAACAACAACTCGTCGACT 57.428 45.000 14.70 0.00 0.00 4.18
210 211 3.696281 TCAACAACAACTCGTCGACTA 57.304 42.857 14.70 0.95 0.00 2.59
211 212 4.233123 TCAACAACAACTCGTCGACTAT 57.767 40.909 14.70 0.00 0.00 2.12
212 213 5.361135 TCAACAACAACTCGTCGACTATA 57.639 39.130 14.70 0.00 0.00 1.31
213 214 5.761003 TCAACAACAACTCGTCGACTATAA 58.239 37.500 14.70 0.00 0.00 0.98
214 215 6.384224 TCAACAACAACTCGTCGACTATAAT 58.616 36.000 14.70 0.00 0.00 1.28
215 216 6.525628 TCAACAACAACTCGTCGACTATAATC 59.474 38.462 14.70 0.00 0.00 1.75
216 217 5.946298 ACAACAACTCGTCGACTATAATCA 58.054 37.500 14.70 0.00 0.00 2.57
217 218 6.561614 ACAACAACTCGTCGACTATAATCAT 58.438 36.000 14.70 0.00 0.00 2.45
218 219 6.472486 ACAACAACTCGTCGACTATAATCATG 59.528 38.462 14.70 6.53 0.00 3.07
219 220 5.520632 ACAACTCGTCGACTATAATCATGG 58.479 41.667 14.70 0.00 0.00 3.66
220 221 4.162096 ACTCGTCGACTATAATCATGGC 57.838 45.455 14.70 0.00 0.00 4.40
221 222 3.057456 ACTCGTCGACTATAATCATGGCC 60.057 47.826 14.70 0.00 0.00 5.36
222 223 2.888414 TCGTCGACTATAATCATGGCCA 59.112 45.455 8.56 8.56 0.00 5.36
223 224 3.319689 TCGTCGACTATAATCATGGCCAA 59.680 43.478 10.96 0.00 0.00 4.52
224 225 4.055360 CGTCGACTATAATCATGGCCAAA 58.945 43.478 10.96 0.17 0.00 3.28
225 226 4.509970 CGTCGACTATAATCATGGCCAAAA 59.490 41.667 10.96 0.00 0.00 2.44
226 227 5.179368 CGTCGACTATAATCATGGCCAAAAT 59.821 40.000 10.96 2.86 0.00 1.82
227 228 6.603095 GTCGACTATAATCATGGCCAAAATC 58.397 40.000 10.96 0.00 0.00 2.17
228 229 5.705441 TCGACTATAATCATGGCCAAAATCC 59.295 40.000 10.96 0.00 0.00 3.01
229 230 5.390885 CGACTATAATCATGGCCAAAATCCG 60.391 44.000 10.96 0.00 0.00 4.18
230 231 4.766891 ACTATAATCATGGCCAAAATCCGG 59.233 41.667 10.96 0.00 0.00 5.14
231 232 1.864669 AATCATGGCCAAAATCCGGT 58.135 45.000 10.96 0.00 0.00 5.28
232 233 1.113788 ATCATGGCCAAAATCCGGTG 58.886 50.000 10.96 0.00 0.00 4.94
233 234 1.153588 CATGGCCAAAATCCGGTGC 60.154 57.895 10.96 0.00 0.00 5.01
234 235 2.709883 ATGGCCAAAATCCGGTGCG 61.710 57.895 10.96 0.00 0.00 5.34
235 236 3.059386 GGCCAAAATCCGGTGCGA 61.059 61.111 0.00 0.00 0.00 5.10
236 237 2.485122 GCCAAAATCCGGTGCGAG 59.515 61.111 0.00 0.00 0.00 5.03
237 238 2.038269 GCCAAAATCCGGTGCGAGA 61.038 57.895 0.00 0.00 0.00 4.04
238 239 1.794222 CCAAAATCCGGTGCGAGAC 59.206 57.895 0.00 0.00 0.00 3.36
239 240 1.419922 CAAAATCCGGTGCGAGACG 59.580 57.895 0.00 0.00 0.00 4.18
240 241 1.011968 CAAAATCCGGTGCGAGACGA 61.012 55.000 0.00 0.00 0.00 4.20
241 242 0.320073 AAAATCCGGTGCGAGACGAA 60.320 50.000 0.00 0.00 0.00 3.85
242 243 0.736325 AAATCCGGTGCGAGACGAAG 60.736 55.000 0.00 0.00 0.00 3.79
243 244 1.592400 AATCCGGTGCGAGACGAAGA 61.592 55.000 0.00 0.00 0.00 2.87
244 245 1.592400 ATCCGGTGCGAGACGAAGAA 61.592 55.000 0.00 0.00 0.00 2.52
245 246 1.153823 CCGGTGCGAGACGAAGAAT 60.154 57.895 0.00 0.00 0.00 2.40
246 247 0.736325 CCGGTGCGAGACGAAGAATT 60.736 55.000 0.00 0.00 0.00 2.17
247 248 0.366871 CGGTGCGAGACGAAGAATTG 59.633 55.000 0.00 0.00 0.00 2.32
248 249 1.710013 GGTGCGAGACGAAGAATTGA 58.290 50.000 0.00 0.00 0.00 2.57
249 250 1.656095 GGTGCGAGACGAAGAATTGAG 59.344 52.381 0.00 0.00 0.00 3.02
250 251 1.656095 GTGCGAGACGAAGAATTGAGG 59.344 52.381 0.00 0.00 0.00 3.86
251 252 1.272490 TGCGAGACGAAGAATTGAGGT 59.728 47.619 0.00 0.00 0.00 3.85
252 253 2.288825 TGCGAGACGAAGAATTGAGGTT 60.289 45.455 0.00 0.00 0.00 3.50
253 254 2.737252 GCGAGACGAAGAATTGAGGTTT 59.263 45.455 0.00 0.00 0.00 3.27
254 255 3.423645 GCGAGACGAAGAATTGAGGTTTG 60.424 47.826 0.00 0.00 0.00 2.93
255 256 3.123621 CGAGACGAAGAATTGAGGTTTGG 59.876 47.826 0.00 0.00 0.00 3.28
256 257 2.814336 AGACGAAGAATTGAGGTTTGGC 59.186 45.455 0.00 0.00 0.00 4.52
257 258 1.535462 ACGAAGAATTGAGGTTTGGCG 59.465 47.619 0.00 0.00 0.00 5.69
258 259 1.135689 CGAAGAATTGAGGTTTGGCGG 60.136 52.381 0.00 0.00 0.00 6.13
259 260 1.202348 GAAGAATTGAGGTTTGGCGGG 59.798 52.381 0.00 0.00 0.00 6.13
260 261 0.112412 AGAATTGAGGTTTGGCGGGT 59.888 50.000 0.00 0.00 0.00 5.28
261 262 0.243636 GAATTGAGGTTTGGCGGGTG 59.756 55.000 0.00 0.00 0.00 4.61
262 263 1.815817 AATTGAGGTTTGGCGGGTGC 61.816 55.000 0.00 0.00 41.71 5.01
263 264 2.992817 ATTGAGGTTTGGCGGGTGCA 62.993 55.000 0.00 0.00 45.35 4.57
264 265 2.909965 GAGGTTTGGCGGGTGCAA 60.910 61.111 0.00 0.00 45.35 4.08
265 266 3.207547 GAGGTTTGGCGGGTGCAAC 62.208 63.158 0.00 0.00 45.35 4.17
266 267 3.223589 GGTTTGGCGGGTGCAACT 61.224 61.111 0.00 0.00 45.35 3.16
267 268 2.335011 GTTTGGCGGGTGCAACTC 59.665 61.111 0.00 0.00 45.35 3.01
268 269 2.124109 TTTGGCGGGTGCAACTCA 60.124 55.556 0.00 0.00 36.87 3.41
269 270 1.530419 TTTGGCGGGTGCAACTCAT 60.530 52.632 0.00 0.00 36.87 2.90
270 271 1.112315 TTTGGCGGGTGCAACTCATT 61.112 50.000 0.00 0.00 36.87 2.57
271 272 1.112315 TTGGCGGGTGCAACTCATTT 61.112 50.000 0.00 0.00 36.87 2.32
272 273 1.080569 GGCGGGTGCAACTCATTTG 60.081 57.895 0.00 0.00 36.87 2.32
273 274 1.659794 GCGGGTGCAACTCATTTGT 59.340 52.632 0.00 0.00 36.87 2.83
274 275 0.664166 GCGGGTGCAACTCATTTGTG 60.664 55.000 0.00 0.00 36.87 3.33
275 276 0.667993 CGGGTGCAACTCATTTGTGT 59.332 50.000 0.00 0.00 36.87 3.72
276 277 1.876799 CGGGTGCAACTCATTTGTGTA 59.123 47.619 0.00 0.00 36.87 2.90
277 278 2.292016 CGGGTGCAACTCATTTGTGTAA 59.708 45.455 0.00 0.00 36.87 2.41
278 279 3.057596 CGGGTGCAACTCATTTGTGTAAT 60.058 43.478 0.00 0.00 36.87 1.89
279 280 4.485163 GGGTGCAACTCATTTGTGTAATC 58.515 43.478 0.00 0.00 37.19 1.75
280 281 4.218417 GGGTGCAACTCATTTGTGTAATCT 59.782 41.667 0.00 0.00 37.19 2.40
281 282 5.278957 GGGTGCAACTCATTTGTGTAATCTT 60.279 40.000 0.00 0.00 37.19 2.40
282 283 6.072175 GGGTGCAACTCATTTGTGTAATCTTA 60.072 38.462 0.00 0.00 37.19 2.10
283 284 7.362920 GGGTGCAACTCATTTGTGTAATCTTAT 60.363 37.037 0.00 0.00 37.19 1.73
284 285 7.485913 GGTGCAACTCATTTGTGTAATCTTATG 59.514 37.037 0.00 0.00 37.54 1.90
285 286 7.008628 GTGCAACTCATTTGTGTAATCTTATGC 59.991 37.037 0.00 0.00 37.54 3.14
286 287 6.473455 GCAACTCATTTGTGTAATCTTATGCC 59.527 38.462 0.00 0.00 37.54 4.40
287 288 6.363577 ACTCATTTGTGTAATCTTATGCCG 57.636 37.500 0.00 0.00 0.00 5.69
288 289 5.296780 ACTCATTTGTGTAATCTTATGCCGG 59.703 40.000 0.00 0.00 0.00 6.13
289 290 5.432645 TCATTTGTGTAATCTTATGCCGGA 58.567 37.500 5.05 0.00 0.00 5.14
290 291 5.883115 TCATTTGTGTAATCTTATGCCGGAA 59.117 36.000 5.05 0.00 0.00 4.30
291 292 5.811399 TTTGTGTAATCTTATGCCGGAAG 57.189 39.130 5.05 0.00 0.00 3.46
292 293 4.746535 TGTGTAATCTTATGCCGGAAGA 57.253 40.909 5.05 6.00 37.34 2.87
293 294 4.693283 TGTGTAATCTTATGCCGGAAGAG 58.307 43.478 5.05 0.00 36.41 2.85
294 295 4.161565 TGTGTAATCTTATGCCGGAAGAGT 59.838 41.667 5.05 7.69 36.41 3.24
295 296 5.361571 TGTGTAATCTTATGCCGGAAGAGTA 59.638 40.000 5.05 6.54 36.41 2.59
296 297 5.921408 GTGTAATCTTATGCCGGAAGAGTAG 59.079 44.000 5.05 0.00 34.99 2.57
297 298 4.608948 AATCTTATGCCGGAAGAGTAGG 57.391 45.455 5.05 0.00 36.41 3.18
302 303 3.553109 GCCGGAAGAGTAGGCTTTT 57.447 52.632 5.05 0.00 46.83 2.27
303 304 1.087501 GCCGGAAGAGTAGGCTTTTG 58.912 55.000 5.05 0.00 46.83 2.44
304 305 1.610886 GCCGGAAGAGTAGGCTTTTGT 60.611 52.381 5.05 0.00 46.83 2.83
305 306 2.779506 CCGGAAGAGTAGGCTTTTGTT 58.220 47.619 0.00 0.00 0.00 2.83
306 307 3.146847 CCGGAAGAGTAGGCTTTTGTTT 58.853 45.455 0.00 0.00 0.00 2.83
307 308 3.568430 CCGGAAGAGTAGGCTTTTGTTTT 59.432 43.478 0.00 0.00 0.00 2.43
308 309 4.758165 CCGGAAGAGTAGGCTTTTGTTTTA 59.242 41.667 0.00 0.00 0.00 1.52
309 310 5.334646 CCGGAAGAGTAGGCTTTTGTTTTAC 60.335 44.000 0.00 0.00 0.00 2.01
310 311 5.334646 CGGAAGAGTAGGCTTTTGTTTTACC 60.335 44.000 0.00 0.00 0.00 2.85
311 312 5.334646 GGAAGAGTAGGCTTTTGTTTTACCG 60.335 44.000 0.00 0.00 0.00 4.02
312 313 4.070009 AGAGTAGGCTTTTGTTTTACCGG 58.930 43.478 0.00 0.00 0.00 5.28
313 314 2.555325 AGTAGGCTTTTGTTTTACCGGC 59.445 45.455 0.00 0.00 0.00 6.13
314 315 1.699730 AGGCTTTTGTTTTACCGGCT 58.300 45.000 0.00 0.00 0.00 5.52
315 316 2.866351 AGGCTTTTGTTTTACCGGCTA 58.134 42.857 0.00 0.00 0.00 3.93
316 317 2.555325 AGGCTTTTGTTTTACCGGCTAC 59.445 45.455 0.00 0.00 0.00 3.58
317 318 2.555325 GGCTTTTGTTTTACCGGCTACT 59.445 45.455 0.00 0.00 0.00 2.57
318 319 3.005050 GGCTTTTGTTTTACCGGCTACTT 59.995 43.478 0.00 0.00 0.00 2.24
319 320 3.978855 GCTTTTGTTTTACCGGCTACTTG 59.021 43.478 0.00 0.00 0.00 3.16
320 321 3.629438 TTTGTTTTACCGGCTACTTGC 57.371 42.857 0.00 0.00 41.94 4.01
321 322 2.554370 TGTTTTACCGGCTACTTGCT 57.446 45.000 0.00 0.00 42.39 3.91
323 324 1.135774 GTTTTACCGGCTACTTGCTGC 60.136 52.381 0.00 0.00 46.34 5.25
324 325 0.675522 TTTACCGGCTACTTGCTGCC 60.676 55.000 0.00 0.00 46.34 4.85
331 332 2.056094 GCTACTTGCTGCCAAACTTG 57.944 50.000 0.00 0.00 38.95 3.16
332 333 1.338020 GCTACTTGCTGCCAAACTTGT 59.662 47.619 0.00 0.00 38.95 3.16
333 334 2.223805 GCTACTTGCTGCCAAACTTGTT 60.224 45.455 0.00 0.00 38.95 2.83
334 335 2.298411 ACTTGCTGCCAAACTTGTTG 57.702 45.000 0.00 0.00 0.00 3.33
335 336 1.550072 ACTTGCTGCCAAACTTGTTGT 59.450 42.857 0.00 0.00 0.00 3.32
336 337 2.757868 ACTTGCTGCCAAACTTGTTGTA 59.242 40.909 0.00 0.00 0.00 2.41
337 338 3.194542 ACTTGCTGCCAAACTTGTTGTAA 59.805 39.130 0.00 0.00 0.00 2.41
338 339 3.876274 TGCTGCCAAACTTGTTGTAAA 57.124 38.095 0.00 0.00 0.00 2.01
367 368 9.780413 CTCTCTTAATTAATGAAGACTTTTGCC 57.220 33.333 10.77 0.00 0.00 4.52
368 369 8.739972 TCTCTTAATTAATGAAGACTTTTGCCC 58.260 33.333 10.77 0.00 0.00 5.36
369 370 8.650143 TCTTAATTAATGAAGACTTTTGCCCT 57.350 30.769 10.77 0.00 0.00 5.19
370 371 9.088987 TCTTAATTAATGAAGACTTTTGCCCTT 57.911 29.630 10.77 0.00 0.00 3.95
371 372 9.710900 CTTAATTAATGAAGACTTTTGCCCTTT 57.289 29.630 6.71 0.00 0.00 3.11
376 377 9.892130 TTAATGAAGACTTTTGCCCTTTAAAAA 57.108 25.926 0.00 0.00 0.00 1.94
408 409 4.386867 TGAGGAAATGTTAGCTCCGTAG 57.613 45.455 0.00 0.00 34.22 3.51
442 443 1.406477 GGACCCACTTACCAACCGATC 60.406 57.143 0.00 0.00 0.00 3.69
459 460 3.706287 TCGAGCACGCGATTCTTAA 57.294 47.368 15.93 0.00 39.58 1.85
464 465 2.924290 GAGCACGCGATTCTTAAGAACT 59.076 45.455 19.94 10.55 36.80 3.01
466 467 2.412089 GCACGCGATTCTTAAGAACTGT 59.588 45.455 19.94 12.57 36.80 3.55
483 485 2.225117 ACTGTTGGGGATCAAAGGAAGG 60.225 50.000 0.00 0.00 37.08 3.46
489 491 2.158740 GGGGATCAAAGGAAGGAGTAGC 60.159 54.545 0.00 0.00 0.00 3.58
496 498 1.516603 GGAAGGAGTAGCGCACGAC 60.517 63.158 11.47 4.33 0.00 4.34
507 509 3.438088 GCACGACGACACTTCTCG 58.562 61.111 0.00 0.00 39.68 4.04
508 510 2.081212 GCACGACGACACTTCTCGG 61.081 63.158 0.00 0.00 38.02 4.63
519 521 1.519455 CTTCTCGGGATCACCACGC 60.519 63.158 0.00 0.00 40.22 5.34
528 535 2.262471 GATCACCACGCTCGTACGGT 62.262 60.000 16.52 2.23 37.37 4.83
529 536 1.870055 ATCACCACGCTCGTACGGTT 61.870 55.000 16.52 0.00 37.37 4.44
532 539 1.153901 CCACGCTCGTACGGTTGAT 60.154 57.895 16.52 0.00 37.37 2.57
534 541 1.138047 CACGCTCGTACGGTTGATCC 61.138 60.000 16.52 0.00 37.37 3.36
541 548 1.671850 CGTACGGTTGATCCAAGTGCT 60.672 52.381 7.57 0.00 35.57 4.40
547 554 3.610114 CGGTTGATCCAAGTGCTTTTCTG 60.610 47.826 0.00 0.00 35.57 3.02
559 566 3.069443 GTGCTTTTCTGGGGTTGAAATGA 59.931 43.478 0.00 0.00 34.04 2.57
560 567 3.708631 TGCTTTTCTGGGGTTGAAATGAA 59.291 39.130 0.00 0.00 34.04 2.57
570 578 4.516323 GGGTTGAAATGAATTTCCCCATG 58.484 43.478 18.16 0.00 42.76 3.66
571 579 4.224818 GGGTTGAAATGAATTTCCCCATGA 59.775 41.667 18.16 0.00 42.76 3.07
574 582 5.070770 TGAAATGAATTTCCCCATGAACG 57.929 39.130 12.11 0.00 44.16 3.95
585 593 2.031120 CCCATGAACGCCAAACCATAT 58.969 47.619 0.00 0.00 0.00 1.78
587 595 3.826157 CCCATGAACGCCAAACCATATAT 59.174 43.478 0.00 0.00 0.00 0.86
589 597 5.123820 CCCATGAACGCCAAACCATATATAG 59.876 44.000 0.00 0.00 0.00 1.31
590 598 5.937540 CCATGAACGCCAAACCATATATAGA 59.062 40.000 0.00 0.00 0.00 1.98
591 599 6.429692 CCATGAACGCCAAACCATATATAGAA 59.570 38.462 0.00 0.00 0.00 2.10
592 600 7.040755 CCATGAACGCCAAACCATATATAGAAA 60.041 37.037 0.00 0.00 0.00 2.52
593 601 7.254227 TGAACGCCAAACCATATATAGAAAC 57.746 36.000 0.00 0.00 0.00 2.78
594 602 5.917541 ACGCCAAACCATATATAGAAACG 57.082 39.130 0.00 0.00 0.00 3.60
595 603 5.362263 ACGCCAAACCATATATAGAAACGT 58.638 37.500 0.00 0.00 0.00 3.99
596 604 5.464389 ACGCCAAACCATATATAGAAACGTC 59.536 40.000 0.00 0.00 0.00 4.34
597 605 5.694910 CGCCAAACCATATATAGAAACGTCT 59.305 40.000 0.00 0.00 37.95 4.18
623 631 6.037720 TCGTTGTTCAGCAGAGTTTGAAATTA 59.962 34.615 0.00 0.00 35.29 1.40
624 632 6.690957 CGTTGTTCAGCAGAGTTTGAAATTAA 59.309 34.615 0.00 0.00 35.29 1.40
625 633 7.219917 CGTTGTTCAGCAGAGTTTGAAATTAAA 59.780 33.333 0.00 0.00 35.29 1.52
626 634 8.868916 GTTGTTCAGCAGAGTTTGAAATTAAAA 58.131 29.630 0.00 0.00 35.29 1.52
627 635 8.994429 TGTTCAGCAGAGTTTGAAATTAAAAA 57.006 26.923 0.00 0.00 35.29 1.94
648 656 4.871933 AAAAATGCCTCTTTGTACAGGG 57.128 40.909 0.00 0.00 0.00 4.45
649 657 1.839424 AATGCCTCTTTGTACAGGGC 58.161 50.000 18.10 18.10 42.73 5.19
693 998 3.061403 CGGCGTCTGTTTAACGTATGATC 60.061 47.826 0.00 0.00 42.02 2.92
695 1000 4.026804 GGCGTCTGTTTAACGTATGATCAG 60.027 45.833 0.09 0.00 42.02 2.90
696 1001 4.561606 GCGTCTGTTTAACGTATGATCAGT 59.438 41.667 0.09 0.00 42.02 3.41
697 1002 5.498700 GCGTCTGTTTAACGTATGATCAGTG 60.499 44.000 0.09 0.00 42.02 3.66
698 1003 5.571741 CGTCTGTTTAACGTATGATCAGTGT 59.428 40.000 0.09 0.00 35.47 3.55
701 1006 7.115805 GTCTGTTTAACGTATGATCAGTGTTGA 59.884 37.037 16.10 8.40 37.81 3.18
702 1007 7.654116 TCTGTTTAACGTATGATCAGTGTTGAA 59.346 33.333 16.10 12.62 36.78 2.69
703 1008 7.569297 TGTTTAACGTATGATCAGTGTTGAAC 58.431 34.615 23.52 23.52 38.64 3.18
705 1010 3.250744 ACGTATGATCAGTGTTGAACGG 58.749 45.455 0.09 0.00 37.86 4.44
706 1011 3.250744 CGTATGATCAGTGTTGAACGGT 58.749 45.455 0.09 0.00 36.78 4.83
707 1012 3.303495 CGTATGATCAGTGTTGAACGGTC 59.697 47.826 0.09 0.00 36.78 4.79
708 1013 1.778334 TGATCAGTGTTGAACGGTCG 58.222 50.000 0.00 0.00 36.78 4.79
714 1020 3.253921 TCAGTGTTGAACGGTCGAGATTA 59.746 43.478 0.00 0.00 0.00 1.75
717 1023 4.684703 AGTGTTGAACGGTCGAGATTAAAG 59.315 41.667 0.00 0.00 0.00 1.85
786 1092 0.462225 TCGTGCCTCCTAGTCTCTCG 60.462 60.000 0.00 0.00 0.00 4.04
787 1093 0.462225 CGTGCCTCCTAGTCTCTCGA 60.462 60.000 0.00 0.00 0.00 4.04
788 1094 1.812324 CGTGCCTCCTAGTCTCTCGAT 60.812 57.143 0.00 0.00 0.00 3.59
789 1095 1.877443 GTGCCTCCTAGTCTCTCGATC 59.123 57.143 0.00 0.00 0.00 3.69
790 1096 1.771854 TGCCTCCTAGTCTCTCGATCT 59.228 52.381 0.00 0.00 0.00 2.75
791 1097 2.224426 TGCCTCCTAGTCTCTCGATCTC 60.224 54.545 0.00 0.00 0.00 2.75
792 1098 2.224426 GCCTCCTAGTCTCTCGATCTCA 60.224 54.545 0.00 0.00 0.00 3.27
793 1099 3.399330 CCTCCTAGTCTCTCGATCTCAC 58.601 54.545 0.00 0.00 0.00 3.51
794 1100 3.057019 CTCCTAGTCTCTCGATCTCACG 58.943 54.545 0.00 0.00 0.00 4.35
797 1103 1.282817 AGTCTCTCGATCTCACGTCG 58.717 55.000 0.00 0.00 40.30 5.12
798 1104 1.135053 AGTCTCTCGATCTCACGTCGA 60.135 52.381 0.00 0.00 44.93 4.20
799 1105 1.005766 GTCTCTCGATCTCACGTCGAC 60.006 57.143 5.18 5.18 42.57 4.20
800 1106 1.135053 TCTCTCGATCTCACGTCGACT 60.135 52.381 14.70 0.00 42.57 4.18
801 1107 1.256895 CTCTCGATCTCACGTCGACTC 59.743 57.143 14.70 1.92 42.57 3.36
802 1108 0.043737 CTCGATCTCACGTCGACTCG 60.044 60.000 14.70 14.50 42.57 4.18
833 1139 0.918619 CGACATACGGCCAGTTTACG 59.081 55.000 2.24 0.00 38.46 3.18
834 1140 1.283736 GACATACGGCCAGTTTACGG 58.716 55.000 2.24 0.00 0.00 4.02
835 1141 0.108041 ACATACGGCCAGTTTACGGG 60.108 55.000 2.24 0.00 0.00 5.28
836 1142 0.812412 CATACGGCCAGTTTACGGGG 60.812 60.000 2.24 0.00 0.00 5.73
837 1143 1.974973 ATACGGCCAGTTTACGGGGG 61.975 60.000 2.24 0.00 0.00 5.40
838 1144 4.024545 CGGCCAGTTTACGGGGGT 62.025 66.667 2.24 0.00 0.00 4.95
839 1145 2.360726 GGCCAGTTTACGGGGGTG 60.361 66.667 0.00 0.00 0.00 4.61
840 1146 2.360726 GCCAGTTTACGGGGGTGG 60.361 66.667 1.32 0.00 0.00 4.61
841 1147 2.360726 CCAGTTTACGGGGGTGGC 60.361 66.667 0.00 0.00 0.00 5.01
842 1148 2.754375 CAGTTTACGGGGGTGGCT 59.246 61.111 0.00 0.00 0.00 4.75
843 1149 1.674322 CAGTTTACGGGGGTGGCTG 60.674 63.158 0.00 0.00 0.00 4.85
844 1150 1.844289 AGTTTACGGGGGTGGCTGA 60.844 57.895 0.00 0.00 0.00 4.26
845 1151 1.376812 GTTTACGGGGGTGGCTGAG 60.377 63.158 0.00 0.00 0.00 3.35
846 1152 1.536907 TTTACGGGGGTGGCTGAGA 60.537 57.895 0.00 0.00 0.00 3.27
847 1153 0.912487 TTTACGGGGGTGGCTGAGAT 60.912 55.000 0.00 0.00 0.00 2.75
848 1154 0.912487 TTACGGGGGTGGCTGAGATT 60.912 55.000 0.00 0.00 0.00 2.40
849 1155 0.912487 TACGGGGGTGGCTGAGATTT 60.912 55.000 0.00 0.00 0.00 2.17
850 1156 0.912487 ACGGGGGTGGCTGAGATTTA 60.912 55.000 0.00 0.00 0.00 1.40
851 1157 0.179045 CGGGGGTGGCTGAGATTTAG 60.179 60.000 0.00 0.00 0.00 1.85
852 1158 0.919710 GGGGGTGGCTGAGATTTAGT 59.080 55.000 0.00 0.00 0.00 2.24
853 1159 1.134068 GGGGGTGGCTGAGATTTAGTC 60.134 57.143 0.00 0.00 0.00 2.59
854 1160 1.473434 GGGGTGGCTGAGATTTAGTCG 60.473 57.143 0.00 0.00 0.00 4.18
855 1161 1.480954 GGGTGGCTGAGATTTAGTCGA 59.519 52.381 0.00 0.00 0.00 4.20
856 1162 2.482142 GGGTGGCTGAGATTTAGTCGAG 60.482 54.545 0.00 0.00 0.00 4.04
857 1163 2.482142 GGTGGCTGAGATTTAGTCGAGG 60.482 54.545 0.00 0.00 0.00 4.63
858 1164 1.757118 TGGCTGAGATTTAGTCGAGGG 59.243 52.381 0.00 0.00 0.00 4.30
859 1165 1.069358 GGCTGAGATTTAGTCGAGGGG 59.931 57.143 0.00 0.00 0.00 4.79
860 1166 1.539280 GCTGAGATTTAGTCGAGGGGC 60.539 57.143 0.00 0.00 0.00 5.80
861 1167 1.757118 CTGAGATTTAGTCGAGGGGCA 59.243 52.381 0.00 0.00 0.00 5.36
862 1168 1.480954 TGAGATTTAGTCGAGGGGCAC 59.519 52.381 0.00 0.00 0.00 5.01
863 1169 1.480954 GAGATTTAGTCGAGGGGCACA 59.519 52.381 0.00 0.00 0.00 4.57
864 1170 1.482593 AGATTTAGTCGAGGGGCACAG 59.517 52.381 0.00 0.00 0.00 3.66
865 1171 0.541863 ATTTAGTCGAGGGGCACAGG 59.458 55.000 0.00 0.00 0.00 4.00
866 1172 2.180159 TTTAGTCGAGGGGCACAGGC 62.180 60.000 0.00 0.00 40.13 4.85
878 1184 2.839098 ACAGGCCCACCAGTGAAG 59.161 61.111 0.00 0.00 39.06 3.02
879 1185 2.078665 ACAGGCCCACCAGTGAAGT 61.079 57.895 0.00 0.00 39.06 3.01
880 1186 1.151450 CAGGCCCACCAGTGAAGTT 59.849 57.895 0.00 0.00 39.06 2.66
881 1187 0.890996 CAGGCCCACCAGTGAAGTTC 60.891 60.000 0.00 0.00 39.06 3.01
882 1188 1.150536 GGCCCACCAGTGAAGTTCA 59.849 57.895 0.08 0.08 35.26 3.18
883 1189 0.251341 GGCCCACCAGTGAAGTTCAT 60.251 55.000 9.18 0.00 35.26 2.57
884 1190 0.883833 GCCCACCAGTGAAGTTCATG 59.116 55.000 9.18 8.32 0.00 3.07
885 1191 1.819305 GCCCACCAGTGAAGTTCATGT 60.819 52.381 9.18 4.46 0.00 3.21
886 1192 1.881973 CCCACCAGTGAAGTTCATGTG 59.118 52.381 9.18 15.39 0.00 3.21
887 1193 2.487086 CCCACCAGTGAAGTTCATGTGA 60.487 50.000 23.67 0.00 30.15 3.58
888 1194 2.810274 CCACCAGTGAAGTTCATGTGAG 59.190 50.000 23.67 14.97 30.15 3.51
889 1195 3.470709 CACCAGTGAAGTTCATGTGAGT 58.529 45.455 20.04 13.03 30.15 3.41
907 1213 4.859798 GTGAGTATGTGACTGCTTACTGAC 59.140 45.833 0.00 0.00 39.06 3.51
911 1238 1.270305 TGTGACTGCTTACTGACCTGC 60.270 52.381 0.00 0.00 0.00 4.85
924 1251 4.624364 CCTGCCGAGGTGTGCACA 62.624 66.667 17.42 17.42 34.16 4.57
971 1303 5.751028 CAGCTCTATAAGTAGCAACTTGTCC 59.249 44.000 1.11 0.00 45.63 4.02
990 1357 0.100325 CCGCTAGAGAGAGCACACTG 59.900 60.000 0.00 0.00 42.99 3.66
1305 1672 0.252197 ACACCGGGCTTCTAATCACC 59.748 55.000 6.32 0.00 0.00 4.02
1387 1761 4.058817 AGTTCAGATCGTTGGTTTCTGTC 58.941 43.478 0.00 0.00 38.39 3.51
1408 1782 5.046376 TGTCCATATAGATGCATCGTCCATT 60.046 40.000 20.67 5.11 0.00 3.16
1414 1788 2.470156 TGCATCGTCCATTGCAGAC 58.530 52.632 0.00 0.00 43.54 3.51
1430 1804 2.028658 GCAGACCACTTCAGTCAGATGA 60.029 50.000 0.00 0.00 36.68 2.92
1434 1808 2.167281 ACCACTTCAGTCAGATGATCCG 59.833 50.000 0.00 0.00 0.00 4.18
1620 1994 1.325640 CTGACGACAAATGATGAGCCG 59.674 52.381 0.00 0.00 0.00 5.52
1765 2139 2.312390 TGGCCTACATATCTACGTGCA 58.688 47.619 3.32 0.00 0.00 4.57
1778 2152 1.225376 ACGTGCATGTACCGTGTTGG 61.225 55.000 10.57 0.00 46.41 3.77
1779 2153 1.873165 GTGCATGTACCGTGTTGGG 59.127 57.895 1.96 0.00 44.64 4.12
1780 2154 0.887387 GTGCATGTACCGTGTTGGGT 60.887 55.000 1.96 0.00 44.64 4.51
1781 2155 0.886938 TGCATGTACCGTGTTGGGTG 60.887 55.000 0.00 0.00 44.64 4.61
1782 2156 0.887387 GCATGTACCGTGTTGGGTGT 60.887 55.000 0.00 0.00 44.64 4.16
1783 2157 1.600023 CATGTACCGTGTTGGGTGTT 58.400 50.000 0.00 0.00 44.64 3.32
1784 2158 1.265635 CATGTACCGTGTTGGGTGTTG 59.734 52.381 0.00 0.00 44.64 3.33
1822 2197 1.190984 CACATACATAGAGCGCTTGCG 59.809 52.381 13.26 10.90 45.69 4.85
1827 2202 3.447025 ATAGAGCGCTTGCGGGGAC 62.447 63.158 13.26 0.00 45.69 4.46
1985 2361 6.627395 TGTTTTATTTATCCACGGGCTATG 57.373 37.500 0.00 0.00 0.00 2.23
1994 2370 5.755409 ATCCACGGGCTATGTTATGATAA 57.245 39.130 0.00 0.00 0.00 1.75
2002 2378 6.127338 CGGGCTATGTTATGATAAGATGGAGA 60.127 42.308 9.37 0.00 0.00 3.71
2078 2455 8.099537 AGCATATACTAGTCCATTTCCATGAAG 58.900 37.037 0.00 0.00 31.07 3.02
2172 2567 7.658179 TGAGTAGTGAAATGAAGATGTGTTC 57.342 36.000 0.00 0.00 0.00 3.18
2173 2568 7.216494 TGAGTAGTGAAATGAAGATGTGTTCA 58.784 34.615 0.00 0.00 40.68 3.18
2179 2574 8.027189 AGTGAAATGAAGATGTGTTCAATGATG 58.973 33.333 0.00 0.00 39.84 3.07
2187 2582 6.056236 AGATGTGTTCAATGATGAGGATGAG 58.944 40.000 0.00 0.00 36.78 2.90
2288 2683 7.923888 ACTTTCGATCTATTCAAACATCATGG 58.076 34.615 0.00 0.00 0.00 3.66
2291 2686 4.377738 CGATCTATTCAAACATCATGGCGG 60.378 45.833 0.00 0.00 0.00 6.13
2303 2698 0.244450 CATGGCGGCACAAAGAACAT 59.756 50.000 16.34 0.00 0.00 2.71
2336 2731 5.815740 ACAGAAATTACATCCATGTCCGTAC 59.184 40.000 0.00 0.00 41.97 3.67
2346 2741 0.822164 ATGTCCGTACACCACCTAGC 59.178 55.000 0.00 0.00 38.78 3.42
2354 2749 4.498682 CCGTACACCACCTAGCAATACTAC 60.499 50.000 0.00 0.00 0.00 2.73
2362 2757 5.163447 CCACCTAGCAATACTACAAGCACTA 60.163 44.000 0.00 0.00 0.00 2.74
2368 2763 3.992260 ATACTACAAGCACTAGAGCGG 57.008 47.619 6.51 5.98 40.15 5.52
2370 2765 0.528684 CTACAAGCACTAGAGCGGGC 60.529 60.000 6.51 0.00 40.15 6.13
2422 2817 3.204827 CGGAGCCGGGCAAATCTG 61.205 66.667 23.09 11.45 35.56 2.90
2425 2820 0.815615 GGAGCCGGGCAAATCTGTAG 60.816 60.000 23.09 0.00 0.00 2.74
2446 2841 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
2447 2842 1.572085 GACAGTCGGGAAGTCGTCGA 61.572 60.000 0.00 0.00 0.00 4.20
2451 2846 1.078918 TCGGGAAGTCGTCGAGCTA 60.079 57.895 0.00 0.00 0.00 3.32
2466 2861 1.004862 GAGCTAAAGCCCCAAAGGACT 59.995 52.381 0.00 0.00 43.38 3.85
2469 2864 2.026169 GCTAAAGCCCCAAAGGACTAGT 60.026 50.000 0.00 0.00 38.24 2.57
2481 2876 2.047061 AGGACTAGTGCACCAGAACAA 58.953 47.619 19.53 0.00 0.00 2.83
2490 2885 0.303493 CACCAGAACAACAACCGTCG 59.697 55.000 0.00 0.00 0.00 5.12
2543 2938 4.430007 TCAACCTGTAGACATATGAACGC 58.570 43.478 10.38 3.26 0.00 4.84
2547 2942 4.342378 ACCTGTAGACATATGAACGCAGAT 59.658 41.667 10.38 2.39 0.00 2.90
2552 2947 3.798878 AGACATATGAACGCAGATGAACG 59.201 43.478 10.38 0.00 44.47 3.95
2559 2954 0.732880 ACGCAGATGAACGAAGACCG 60.733 55.000 0.00 0.00 45.44 4.79
2560 2955 0.456142 CGCAGATGAACGAAGACCGA 60.456 55.000 0.00 0.00 41.76 4.69
2568 2963 1.327764 GAACGAAGACCGAATCCATGC 59.672 52.381 0.00 0.00 41.76 4.06
2570 2965 0.933097 CGAAGACCGAATCCATGCAG 59.067 55.000 0.00 0.00 41.76 4.41
2573 2968 2.251409 AGACCGAATCCATGCAGATG 57.749 50.000 0.00 0.00 0.00 2.90
2601 2996 0.035439 ACAAATGCCGACCGAATCCT 60.035 50.000 0.00 0.00 0.00 3.24
2602 2997 0.378257 CAAATGCCGACCGAATCCTG 59.622 55.000 0.00 0.00 0.00 3.86
2603 2998 0.035439 AAATGCCGACCGAATCCTGT 60.035 50.000 0.00 0.00 0.00 4.00
2604 2999 0.462047 AATGCCGACCGAATCCTGTC 60.462 55.000 0.00 0.00 0.00 3.51
2607 3002 4.072913 CGACCGAATCCTGTCGTG 57.927 61.111 10.58 0.00 46.83 4.35
2608 3003 1.516386 CGACCGAATCCTGTCGTGG 60.516 63.158 10.58 0.00 46.83 4.94
2609 3004 1.888018 GACCGAATCCTGTCGTGGA 59.112 57.895 0.00 0.00 39.43 4.02
2610 3005 0.245539 GACCGAATCCTGTCGTGGAA 59.754 55.000 0.00 0.00 39.85 3.53
2611 3006 0.902531 ACCGAATCCTGTCGTGGAAT 59.097 50.000 0.00 0.00 39.85 3.01
2612 3007 1.278127 ACCGAATCCTGTCGTGGAATT 59.722 47.619 0.00 0.00 39.85 2.17
2613 3008 1.665679 CCGAATCCTGTCGTGGAATTG 59.334 52.381 0.00 0.00 39.85 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.182996 ACCACACCAACCTCCCCC 61.183 66.667 0.00 0.00 0.00 5.40
6 7 2.115266 CACCACACCAACCTCCCC 59.885 66.667 0.00 0.00 0.00 4.81
7 8 2.115266 CCACCACACCAACCTCCC 59.885 66.667 0.00 0.00 0.00 4.30
8 9 2.597510 GCCACCACACCAACCTCC 60.598 66.667 0.00 0.00 0.00 4.30
9 10 2.978010 CGCCACCACACCAACCTC 60.978 66.667 0.00 0.00 0.00 3.85
12 13 1.852067 CTAAGCGCCACCACACCAAC 61.852 60.000 2.29 0.00 0.00 3.77
13 14 1.599518 CTAAGCGCCACCACACCAA 60.600 57.895 2.29 0.00 0.00 3.67
14 15 2.031919 CTAAGCGCCACCACACCA 59.968 61.111 2.29 0.00 0.00 4.17
15 16 2.746277 CCTAAGCGCCACCACACC 60.746 66.667 2.29 0.00 0.00 4.16
16 17 2.746277 CCCTAAGCGCCACCACAC 60.746 66.667 2.29 0.00 0.00 3.82
17 18 2.346284 AAACCCTAAGCGCCACCACA 62.346 55.000 2.29 0.00 0.00 4.17
18 19 1.583495 GAAACCCTAAGCGCCACCAC 61.583 60.000 2.29 0.00 0.00 4.16
19 20 1.302993 GAAACCCTAAGCGCCACCA 60.303 57.895 2.29 0.00 0.00 4.17
20 21 1.302993 TGAAACCCTAAGCGCCACC 60.303 57.895 2.29 0.00 0.00 4.61
21 22 1.873863 GTGAAACCCTAAGCGCCAC 59.126 57.895 2.29 0.00 0.00 5.01
22 23 4.390048 GTGAAACCCTAAGCGCCA 57.610 55.556 2.29 0.00 0.00 5.69
33 34 2.315386 GCGACTCGGGTGGTGAAAC 61.315 63.158 0.00 0.00 0.00 2.78
34 35 2.029964 GCGACTCGGGTGGTGAAA 59.970 61.111 0.00 0.00 0.00 2.69
35 36 3.998672 GGCGACTCGGGTGGTGAA 61.999 66.667 0.00 0.00 0.00 3.18
63 64 3.775654 CTCCCCACTCCTCGTGCC 61.776 72.222 0.00 0.00 42.42 5.01
64 65 3.775654 CCTCCCCACTCCTCGTGC 61.776 72.222 0.00 0.00 42.42 5.34
65 66 3.077556 CCCTCCCCACTCCTCGTG 61.078 72.222 0.00 0.00 43.41 4.35
66 67 4.400251 CCCCTCCCCACTCCTCGT 62.400 72.222 0.00 0.00 0.00 4.18
68 69 4.741239 TGCCCCTCCCCACTCCTC 62.741 72.222 0.00 0.00 0.00 3.71
69 70 4.285790 TTGCCCCTCCCCACTCCT 62.286 66.667 0.00 0.00 0.00 3.69
70 71 4.048470 GTTGCCCCTCCCCACTCC 62.048 72.222 0.00 0.00 0.00 3.85
71 72 4.048470 GGTTGCCCCTCCCCACTC 62.048 72.222 0.00 0.00 0.00 3.51
84 85 1.821216 ACAATAGCAAGACCGGGTTG 58.179 50.000 6.32 10.62 0.00 3.77
85 86 2.224670 TGAACAATAGCAAGACCGGGTT 60.225 45.455 6.32 0.00 0.00 4.11
86 87 1.349688 TGAACAATAGCAAGACCGGGT 59.650 47.619 6.32 0.00 0.00 5.28
87 88 2.107950 TGAACAATAGCAAGACCGGG 57.892 50.000 6.32 0.00 0.00 5.73
88 89 4.497473 TTTTGAACAATAGCAAGACCGG 57.503 40.909 0.00 0.00 0.00 5.28
89 90 7.406799 AAAATTTTGAACAATAGCAAGACCG 57.593 32.000 1.75 0.00 0.00 4.79
90 91 7.381139 TCGAAAATTTTGAACAATAGCAAGACC 59.619 33.333 8.47 0.00 0.00 3.85
91 92 8.207906 GTCGAAAATTTTGAACAATAGCAAGAC 58.792 33.333 8.47 0.00 0.00 3.01
92 93 7.381139 GGTCGAAAATTTTGAACAATAGCAAGA 59.619 33.333 8.47 0.00 0.00 3.02
93 94 7.382218 AGGTCGAAAATTTTGAACAATAGCAAG 59.618 33.333 13.01 0.00 0.00 4.01
94 95 7.206687 AGGTCGAAAATTTTGAACAATAGCAA 58.793 30.769 13.01 0.00 0.00 3.91
95 96 6.744112 AGGTCGAAAATTTTGAACAATAGCA 58.256 32.000 13.01 0.00 0.00 3.49
96 97 8.911247 ATAGGTCGAAAATTTTGAACAATAGC 57.089 30.769 13.01 0.00 0.00 2.97
100 101 9.685828 CCTTTATAGGTCGAAAATTTTGAACAA 57.314 29.630 13.01 0.00 36.74 2.83
101 102 7.810759 GCCTTTATAGGTCGAAAATTTTGAACA 59.189 33.333 13.01 0.66 44.00 3.18
102 103 8.027189 AGCCTTTATAGGTCGAAAATTTTGAAC 58.973 33.333 8.47 8.92 44.00 3.18
103 104 8.117813 AGCCTTTATAGGTCGAAAATTTTGAA 57.882 30.769 8.47 0.00 44.00 2.69
104 105 7.696992 AGCCTTTATAGGTCGAAAATTTTGA 57.303 32.000 8.47 3.74 44.00 2.69
105 106 9.450807 CATAGCCTTTATAGGTCGAAAATTTTG 57.549 33.333 8.47 1.31 44.00 2.44
106 107 8.630037 CCATAGCCTTTATAGGTCGAAAATTTT 58.370 33.333 2.28 2.28 44.00 1.82
107 108 7.255486 GCCATAGCCTTTATAGGTCGAAAATTT 60.255 37.037 0.90 0.00 44.00 1.82
108 109 6.206829 GCCATAGCCTTTATAGGTCGAAAATT 59.793 38.462 0.90 0.00 44.00 1.82
109 110 5.705905 GCCATAGCCTTTATAGGTCGAAAAT 59.294 40.000 0.90 0.00 44.00 1.82
110 111 5.061179 GCCATAGCCTTTATAGGTCGAAAA 58.939 41.667 0.90 0.00 44.00 2.29
111 112 4.347000 AGCCATAGCCTTTATAGGTCGAAA 59.653 41.667 0.90 0.00 44.00 3.46
112 113 3.901844 AGCCATAGCCTTTATAGGTCGAA 59.098 43.478 0.90 0.00 44.00 3.71
113 114 3.507411 AGCCATAGCCTTTATAGGTCGA 58.493 45.455 0.90 0.00 44.00 4.20
114 115 3.963428 AGCCATAGCCTTTATAGGTCG 57.037 47.619 0.90 0.00 44.00 4.79
115 116 5.491323 AGAAGCCATAGCCTTTATAGGTC 57.509 43.478 0.90 0.00 44.00 3.85
116 117 7.575499 AATAGAAGCCATAGCCTTTATAGGT 57.425 36.000 0.90 0.00 44.00 3.08
117 118 8.540388 TGTAATAGAAGCCATAGCCTTTATAGG 58.460 37.037 0.00 0.00 45.02 2.57
118 119 9.944376 TTGTAATAGAAGCCATAGCCTTTATAG 57.056 33.333 0.00 0.00 41.25 1.31
120 121 9.236006 CATTGTAATAGAAGCCATAGCCTTTAT 57.764 33.333 0.00 0.00 41.25 1.40
121 122 7.174946 GCATTGTAATAGAAGCCATAGCCTTTA 59.825 37.037 0.00 0.00 41.25 1.85
122 123 6.015940 GCATTGTAATAGAAGCCATAGCCTTT 60.016 38.462 0.00 0.00 41.25 3.11
123 124 5.474876 GCATTGTAATAGAAGCCATAGCCTT 59.525 40.000 0.00 0.00 41.25 4.35
124 125 5.006386 GCATTGTAATAGAAGCCATAGCCT 58.994 41.667 0.00 0.00 41.25 4.58
125 126 5.006386 AGCATTGTAATAGAAGCCATAGCC 58.994 41.667 0.00 0.00 41.25 3.93
126 127 6.376978 CAAGCATTGTAATAGAAGCCATAGC 58.623 40.000 0.00 0.00 42.34 2.97
142 143 5.049954 CACAATTCCCAAGAAACAAGCATTG 60.050 40.000 0.00 0.00 42.63 2.82
143 144 5.058490 CACAATTCCCAAGAAACAAGCATT 58.942 37.500 0.00 0.00 35.09 3.56
144 145 4.503643 CCACAATTCCCAAGAAACAAGCAT 60.504 41.667 0.00 0.00 35.09 3.79
145 146 3.181467 CCACAATTCCCAAGAAACAAGCA 60.181 43.478 0.00 0.00 35.09 3.91
146 147 3.069443 TCCACAATTCCCAAGAAACAAGC 59.931 43.478 0.00 0.00 35.09 4.01
147 148 4.935352 TCCACAATTCCCAAGAAACAAG 57.065 40.909 0.00 0.00 35.09 3.16
148 149 4.440802 CGTTCCACAATTCCCAAGAAACAA 60.441 41.667 0.00 0.00 35.09 2.83
149 150 3.067461 CGTTCCACAATTCCCAAGAAACA 59.933 43.478 0.00 0.00 35.09 2.83
150 151 3.316868 TCGTTCCACAATTCCCAAGAAAC 59.683 43.478 0.00 0.00 35.09 2.78
151 152 3.556999 TCGTTCCACAATTCCCAAGAAA 58.443 40.909 0.00 0.00 35.09 2.52
152 153 3.146066 CTCGTTCCACAATTCCCAAGAA 58.854 45.455 0.00 0.00 36.15 2.52
153 154 2.552155 CCTCGTTCCACAATTCCCAAGA 60.552 50.000 0.00 0.00 0.00 3.02
154 155 1.812571 CCTCGTTCCACAATTCCCAAG 59.187 52.381 0.00 0.00 0.00 3.61
155 156 1.546773 CCCTCGTTCCACAATTCCCAA 60.547 52.381 0.00 0.00 0.00 4.12
156 157 0.037590 CCCTCGTTCCACAATTCCCA 59.962 55.000 0.00 0.00 0.00 4.37
157 158 1.313091 GCCCTCGTTCCACAATTCCC 61.313 60.000 0.00 0.00 0.00 3.97
158 159 0.608035 TGCCCTCGTTCCACAATTCC 60.608 55.000 0.00 0.00 0.00 3.01
159 160 1.243902 TTGCCCTCGTTCCACAATTC 58.756 50.000 0.00 0.00 0.00 2.17
160 161 1.545582 CATTGCCCTCGTTCCACAATT 59.454 47.619 0.00 0.00 0.00 2.32
161 162 1.176527 CATTGCCCTCGTTCCACAAT 58.823 50.000 0.00 0.00 0.00 2.71
162 163 1.523154 GCATTGCCCTCGTTCCACAA 61.523 55.000 0.00 0.00 0.00 3.33
163 164 1.971167 GCATTGCCCTCGTTCCACA 60.971 57.895 0.00 0.00 0.00 4.17
164 165 1.523154 TTGCATTGCCCTCGTTCCAC 61.523 55.000 6.12 0.00 0.00 4.02
165 166 1.228398 TTGCATTGCCCTCGTTCCA 60.228 52.632 6.12 0.00 0.00 3.53
166 167 1.508088 CTTGCATTGCCCTCGTTCC 59.492 57.895 6.12 0.00 0.00 3.62
167 168 0.960364 TCCTTGCATTGCCCTCGTTC 60.960 55.000 6.12 0.00 0.00 3.95
168 169 0.323725 ATCCTTGCATTGCCCTCGTT 60.324 50.000 6.12 0.00 0.00 3.85
169 170 0.749454 GATCCTTGCATTGCCCTCGT 60.749 55.000 6.12 0.00 0.00 4.18
170 171 0.465097 AGATCCTTGCATTGCCCTCG 60.465 55.000 6.12 0.00 0.00 4.63
171 172 1.680207 GAAGATCCTTGCATTGCCCTC 59.320 52.381 6.12 0.00 0.00 4.30
172 173 1.006281 TGAAGATCCTTGCATTGCCCT 59.994 47.619 6.12 0.00 0.00 5.19
173 174 1.477553 TGAAGATCCTTGCATTGCCC 58.522 50.000 6.12 0.00 0.00 5.36
174 175 2.231964 TGTTGAAGATCCTTGCATTGCC 59.768 45.455 6.12 0.00 0.00 4.52
175 176 3.581024 TGTTGAAGATCCTTGCATTGC 57.419 42.857 0.46 0.46 0.00 3.56
176 177 4.873817 TGTTGTTGAAGATCCTTGCATTG 58.126 39.130 0.00 0.00 0.00 2.82
177 178 5.069516 AGTTGTTGTTGAAGATCCTTGCATT 59.930 36.000 0.00 0.00 0.00 3.56
178 179 4.586001 AGTTGTTGTTGAAGATCCTTGCAT 59.414 37.500 0.00 0.00 0.00 3.96
179 180 3.953612 AGTTGTTGTTGAAGATCCTTGCA 59.046 39.130 0.00 0.00 0.00 4.08
180 181 4.540824 GAGTTGTTGTTGAAGATCCTTGC 58.459 43.478 0.00 0.00 0.00 4.01
181 182 4.273480 ACGAGTTGTTGTTGAAGATCCTTG 59.727 41.667 0.00 0.00 0.00 3.61
182 183 4.451900 ACGAGTTGTTGTTGAAGATCCTT 58.548 39.130 0.00 0.00 0.00 3.36
183 184 4.058817 GACGAGTTGTTGTTGAAGATCCT 58.941 43.478 0.00 0.00 0.00 3.24
184 185 3.120991 CGACGAGTTGTTGTTGAAGATCC 60.121 47.826 0.00 0.00 0.00 3.36
185 186 3.734231 TCGACGAGTTGTTGTTGAAGATC 59.266 43.478 0.00 0.00 33.33 2.75
186 187 3.489785 GTCGACGAGTTGTTGTTGAAGAT 59.510 43.478 0.00 0.00 32.90 2.40
187 188 2.855963 GTCGACGAGTTGTTGTTGAAGA 59.144 45.455 0.00 0.00 32.90 2.87
188 189 2.858344 AGTCGACGAGTTGTTGTTGAAG 59.142 45.455 10.46 0.00 32.90 3.02
189 190 2.883574 AGTCGACGAGTTGTTGTTGAA 58.116 42.857 10.46 0.00 32.90 2.69
190 191 2.572191 AGTCGACGAGTTGTTGTTGA 57.428 45.000 10.46 0.00 33.33 3.18
191 192 6.307077 TGATTATAGTCGACGAGTTGTTGTTG 59.693 38.462 11.03 0.00 33.33 3.33
192 193 6.384224 TGATTATAGTCGACGAGTTGTTGTT 58.616 36.000 11.03 0.00 33.33 2.83
193 194 5.946298 TGATTATAGTCGACGAGTTGTTGT 58.054 37.500 11.03 0.00 33.33 3.32
194 195 6.074835 CCATGATTATAGTCGACGAGTTGTTG 60.075 42.308 11.03 3.72 0.00 3.33
195 196 5.977725 CCATGATTATAGTCGACGAGTTGTT 59.022 40.000 11.03 0.00 0.00 2.83
196 197 5.520632 CCATGATTATAGTCGACGAGTTGT 58.479 41.667 11.03 3.19 0.00 3.32
197 198 4.383052 GCCATGATTATAGTCGACGAGTTG 59.617 45.833 11.03 1.01 0.00 3.16
198 199 4.547532 GCCATGATTATAGTCGACGAGTT 58.452 43.478 11.03 0.00 0.00 3.01
199 200 3.057456 GGCCATGATTATAGTCGACGAGT 60.057 47.826 10.46 10.54 0.00 4.18
200 201 3.057526 TGGCCATGATTATAGTCGACGAG 60.058 47.826 10.46 0.00 0.00 4.18
201 202 2.888414 TGGCCATGATTATAGTCGACGA 59.112 45.455 10.46 5.12 0.00 4.20
202 203 3.297830 TGGCCATGATTATAGTCGACG 57.702 47.619 10.46 0.00 0.00 5.12
203 204 6.348540 GGATTTTGGCCATGATTATAGTCGAC 60.349 42.308 6.09 7.70 0.00 4.20
204 205 5.705441 GGATTTTGGCCATGATTATAGTCGA 59.295 40.000 6.09 0.00 0.00 4.20
205 206 5.390885 CGGATTTTGGCCATGATTATAGTCG 60.391 44.000 6.09 0.00 0.00 4.18
206 207 5.106157 CCGGATTTTGGCCATGATTATAGTC 60.106 44.000 6.09 0.00 0.00 2.59
207 208 4.766891 CCGGATTTTGGCCATGATTATAGT 59.233 41.667 6.09 0.00 0.00 2.12
208 209 4.766891 ACCGGATTTTGGCCATGATTATAG 59.233 41.667 9.46 0.00 0.00 1.31
209 210 4.522405 CACCGGATTTTGGCCATGATTATA 59.478 41.667 9.46 0.00 0.00 0.98
210 211 3.321682 CACCGGATTTTGGCCATGATTAT 59.678 43.478 9.46 0.00 0.00 1.28
211 212 2.692557 CACCGGATTTTGGCCATGATTA 59.307 45.455 9.46 0.00 0.00 1.75
212 213 1.481772 CACCGGATTTTGGCCATGATT 59.518 47.619 9.46 0.00 0.00 2.57
213 214 1.113788 CACCGGATTTTGGCCATGAT 58.886 50.000 9.46 3.12 0.00 2.45
214 215 1.603236 GCACCGGATTTTGGCCATGA 61.603 55.000 9.46 0.00 0.00 3.07
215 216 1.153588 GCACCGGATTTTGGCCATG 60.154 57.895 9.46 0.00 0.00 3.66
216 217 2.709883 CGCACCGGATTTTGGCCAT 61.710 57.895 9.46 0.00 0.00 4.40
217 218 3.369400 CGCACCGGATTTTGGCCA 61.369 61.111 9.46 0.00 0.00 5.36
218 219 3.051392 CTCGCACCGGATTTTGGCC 62.051 63.158 9.46 0.00 0.00 5.36
219 220 2.038269 TCTCGCACCGGATTTTGGC 61.038 57.895 9.46 0.29 0.00 4.52
220 221 1.794222 GTCTCGCACCGGATTTTGG 59.206 57.895 9.46 0.00 0.00 3.28
221 222 1.011968 TCGTCTCGCACCGGATTTTG 61.012 55.000 9.46 0.00 0.00 2.44
222 223 0.320073 TTCGTCTCGCACCGGATTTT 60.320 50.000 9.46 0.00 0.00 1.82
223 224 0.736325 CTTCGTCTCGCACCGGATTT 60.736 55.000 9.46 0.00 0.00 2.17
224 225 1.153823 CTTCGTCTCGCACCGGATT 60.154 57.895 9.46 0.00 0.00 3.01
225 226 1.592400 TTCTTCGTCTCGCACCGGAT 61.592 55.000 9.46 0.00 0.00 4.18
226 227 1.592400 ATTCTTCGTCTCGCACCGGA 61.592 55.000 9.46 0.00 0.00 5.14
227 228 0.736325 AATTCTTCGTCTCGCACCGG 60.736 55.000 0.00 0.00 0.00 5.28
228 229 0.366871 CAATTCTTCGTCTCGCACCG 59.633 55.000 0.00 0.00 0.00 4.94
229 230 1.656095 CTCAATTCTTCGTCTCGCACC 59.344 52.381 0.00 0.00 0.00 5.01
230 231 1.656095 CCTCAATTCTTCGTCTCGCAC 59.344 52.381 0.00 0.00 0.00 5.34
231 232 1.272490 ACCTCAATTCTTCGTCTCGCA 59.728 47.619 0.00 0.00 0.00 5.10
232 233 1.997669 ACCTCAATTCTTCGTCTCGC 58.002 50.000 0.00 0.00 0.00 5.03
233 234 3.123621 CCAAACCTCAATTCTTCGTCTCG 59.876 47.826 0.00 0.00 0.00 4.04
234 235 3.120165 GCCAAACCTCAATTCTTCGTCTC 60.120 47.826 0.00 0.00 0.00 3.36
235 236 2.814336 GCCAAACCTCAATTCTTCGTCT 59.186 45.455 0.00 0.00 0.00 4.18
236 237 2.412847 CGCCAAACCTCAATTCTTCGTC 60.413 50.000 0.00 0.00 0.00 4.20
237 238 1.535462 CGCCAAACCTCAATTCTTCGT 59.465 47.619 0.00 0.00 0.00 3.85
238 239 1.135689 CCGCCAAACCTCAATTCTTCG 60.136 52.381 0.00 0.00 0.00 3.79
239 240 1.202348 CCCGCCAAACCTCAATTCTTC 59.798 52.381 0.00 0.00 0.00 2.87
240 241 1.256812 CCCGCCAAACCTCAATTCTT 58.743 50.000 0.00 0.00 0.00 2.52
241 242 0.112412 ACCCGCCAAACCTCAATTCT 59.888 50.000 0.00 0.00 0.00 2.40
242 243 0.243636 CACCCGCCAAACCTCAATTC 59.756 55.000 0.00 0.00 0.00 2.17
243 244 1.815817 GCACCCGCCAAACCTCAATT 61.816 55.000 0.00 0.00 0.00 2.32
244 245 2.275380 GCACCCGCCAAACCTCAAT 61.275 57.895 0.00 0.00 0.00 2.57
245 246 2.909965 GCACCCGCCAAACCTCAA 60.910 61.111 0.00 0.00 0.00 3.02
246 247 3.723097 TTGCACCCGCCAAACCTCA 62.723 57.895 0.00 0.00 37.32 3.86
247 248 2.909965 TTGCACCCGCCAAACCTC 60.910 61.111 0.00 0.00 37.32 3.85
248 249 3.223589 GTTGCACCCGCCAAACCT 61.224 61.111 0.00 0.00 37.32 3.50
249 250 3.207547 GAGTTGCACCCGCCAAACC 62.208 63.158 0.00 0.00 37.32 3.27
250 251 1.805428 ATGAGTTGCACCCGCCAAAC 61.805 55.000 0.00 0.00 37.32 2.93
251 252 1.112315 AATGAGTTGCACCCGCCAAA 61.112 50.000 0.00 0.00 37.32 3.28
252 253 1.112315 AAATGAGTTGCACCCGCCAA 61.112 50.000 0.00 0.00 37.32 4.52
253 254 1.530419 AAATGAGTTGCACCCGCCA 60.530 52.632 0.00 0.00 37.32 5.69
254 255 1.080569 CAAATGAGTTGCACCCGCC 60.081 57.895 0.00 0.00 37.32 6.13
255 256 0.664166 CACAAATGAGTTGCACCCGC 60.664 55.000 0.00 0.00 41.31 6.13
256 257 0.667993 ACACAAATGAGTTGCACCCG 59.332 50.000 0.00 0.00 41.31 5.28
257 258 4.218417 AGATTACACAAATGAGTTGCACCC 59.782 41.667 0.00 0.00 41.31 4.61
258 259 5.376854 AGATTACACAAATGAGTTGCACC 57.623 39.130 0.00 0.00 41.31 5.01
259 260 7.008628 GCATAAGATTACACAAATGAGTTGCAC 59.991 37.037 0.00 0.00 41.31 4.57
260 261 7.028962 GCATAAGATTACACAAATGAGTTGCA 58.971 34.615 0.00 0.00 41.31 4.08
261 262 6.473455 GGCATAAGATTACACAAATGAGTTGC 59.527 38.462 0.00 0.00 41.31 4.17
262 263 6.688385 CGGCATAAGATTACACAAATGAGTTG 59.312 38.462 0.00 0.00 43.43 3.16
263 264 6.183360 CCGGCATAAGATTACACAAATGAGTT 60.183 38.462 0.00 0.00 0.00 3.01
264 265 5.296780 CCGGCATAAGATTACACAAATGAGT 59.703 40.000 0.00 0.00 0.00 3.41
265 266 5.527214 TCCGGCATAAGATTACACAAATGAG 59.473 40.000 0.00 0.00 0.00 2.90
266 267 5.432645 TCCGGCATAAGATTACACAAATGA 58.567 37.500 0.00 0.00 0.00 2.57
267 268 5.749596 TCCGGCATAAGATTACACAAATG 57.250 39.130 0.00 0.00 0.00 2.32
268 269 6.119536 TCTTCCGGCATAAGATTACACAAAT 58.880 36.000 0.00 0.00 0.00 2.32
269 270 5.492895 TCTTCCGGCATAAGATTACACAAA 58.507 37.500 0.00 0.00 0.00 2.83
270 271 5.092554 TCTTCCGGCATAAGATTACACAA 57.907 39.130 0.00 0.00 0.00 3.33
271 272 4.161565 ACTCTTCCGGCATAAGATTACACA 59.838 41.667 4.67 0.00 32.72 3.72
272 273 4.694339 ACTCTTCCGGCATAAGATTACAC 58.306 43.478 4.67 0.00 32.72 2.90
273 274 5.010719 CCTACTCTTCCGGCATAAGATTACA 59.989 44.000 4.67 0.00 32.72 2.41
274 275 5.471257 CCTACTCTTCCGGCATAAGATTAC 58.529 45.833 4.67 0.00 32.72 1.89
275 276 4.021368 GCCTACTCTTCCGGCATAAGATTA 60.021 45.833 4.67 3.57 43.25 1.75
276 277 3.244249 GCCTACTCTTCCGGCATAAGATT 60.244 47.826 4.67 2.62 43.25 2.40
277 278 2.300437 GCCTACTCTTCCGGCATAAGAT 59.700 50.000 4.67 0.00 43.25 2.40
278 279 1.687123 GCCTACTCTTCCGGCATAAGA 59.313 52.381 0.00 0.00 43.25 2.10
279 280 1.689273 AGCCTACTCTTCCGGCATAAG 59.311 52.381 0.00 0.00 46.14 1.73
280 281 1.789523 AGCCTACTCTTCCGGCATAA 58.210 50.000 0.00 0.00 46.14 1.90
281 282 1.789523 AAGCCTACTCTTCCGGCATA 58.210 50.000 0.00 0.00 46.14 3.14
282 283 0.912486 AAAGCCTACTCTTCCGGCAT 59.088 50.000 0.00 0.00 46.14 4.40
283 284 0.690762 AAAAGCCTACTCTTCCGGCA 59.309 50.000 0.00 0.00 46.14 5.69
284 285 1.087501 CAAAAGCCTACTCTTCCGGC 58.912 55.000 0.00 0.00 44.09 6.13
285 286 2.474410 ACAAAAGCCTACTCTTCCGG 57.526 50.000 0.00 0.00 0.00 5.14
286 287 4.830826 AAAACAAAAGCCTACTCTTCCG 57.169 40.909 0.00 0.00 0.00 4.30
287 288 5.334646 CGGTAAAACAAAAGCCTACTCTTCC 60.335 44.000 0.00 0.00 0.00 3.46
288 289 5.334646 CCGGTAAAACAAAAGCCTACTCTTC 60.335 44.000 0.00 0.00 0.00 2.87
289 290 4.517832 CCGGTAAAACAAAAGCCTACTCTT 59.482 41.667 0.00 0.00 0.00 2.85
290 291 4.070009 CCGGTAAAACAAAAGCCTACTCT 58.930 43.478 0.00 0.00 0.00 3.24
291 292 3.365666 GCCGGTAAAACAAAAGCCTACTC 60.366 47.826 1.90 0.00 0.00 2.59
292 293 2.555325 GCCGGTAAAACAAAAGCCTACT 59.445 45.455 1.90 0.00 0.00 2.57
293 294 2.555325 AGCCGGTAAAACAAAAGCCTAC 59.445 45.455 1.90 0.00 0.00 3.18
294 295 2.866351 AGCCGGTAAAACAAAAGCCTA 58.134 42.857 1.90 0.00 0.00 3.93
295 296 1.699730 AGCCGGTAAAACAAAAGCCT 58.300 45.000 1.90 0.00 0.00 4.58
296 297 2.555325 AGTAGCCGGTAAAACAAAAGCC 59.445 45.455 1.90 0.00 0.00 4.35
297 298 3.909776 AGTAGCCGGTAAAACAAAAGC 57.090 42.857 1.90 0.00 0.00 3.51
298 299 3.978855 GCAAGTAGCCGGTAAAACAAAAG 59.021 43.478 1.90 0.00 37.23 2.27
299 300 3.967401 GCAAGTAGCCGGTAAAACAAAA 58.033 40.909 1.90 0.00 37.23 2.44
300 301 3.629438 GCAAGTAGCCGGTAAAACAAA 57.371 42.857 1.90 0.00 37.23 2.83
312 313 1.338020 ACAAGTTTGGCAGCAAGTAGC 59.662 47.619 0.00 0.00 46.19 3.58
313 314 3.181487 ACAACAAGTTTGGCAGCAAGTAG 60.181 43.478 0.00 0.00 0.00 2.57
314 315 2.757868 ACAACAAGTTTGGCAGCAAGTA 59.242 40.909 0.00 0.00 0.00 2.24
315 316 1.550072 ACAACAAGTTTGGCAGCAAGT 59.450 42.857 0.00 0.00 0.00 3.16
316 317 2.298411 ACAACAAGTTTGGCAGCAAG 57.702 45.000 0.00 0.00 0.00 4.01
317 318 3.876274 TTACAACAAGTTTGGCAGCAA 57.124 38.095 0.00 0.00 0.00 3.91
318 319 3.194542 AGTTTACAACAAGTTTGGCAGCA 59.805 39.130 0.00 0.00 0.00 4.41
319 320 3.780902 AGTTTACAACAAGTTTGGCAGC 58.219 40.909 0.00 0.00 0.00 5.25
320 321 5.066505 AGAGAGTTTACAACAAGTTTGGCAG 59.933 40.000 0.00 0.00 0.00 4.85
321 322 4.947388 AGAGAGTTTACAACAAGTTTGGCA 59.053 37.500 0.00 0.00 0.00 4.92
322 323 5.297029 AGAGAGAGTTTACAACAAGTTTGGC 59.703 40.000 0.00 0.00 0.00 4.52
323 324 6.927294 AGAGAGAGTTTACAACAAGTTTGG 57.073 37.500 0.00 0.00 0.00 3.28
341 342 9.780413 GGCAAAAGTCTTCATTAATTAAGAGAG 57.220 33.333 11.51 1.89 32.56 3.20
342 343 8.739972 GGGCAAAAGTCTTCATTAATTAAGAGA 58.260 33.333 11.51 4.69 32.56 3.10
343 344 8.743714 AGGGCAAAAGTCTTCATTAATTAAGAG 58.256 33.333 11.51 2.78 32.56 2.85
344 345 8.650143 AGGGCAAAAGTCTTCATTAATTAAGA 57.350 30.769 7.81 7.81 0.00 2.10
345 346 9.710900 AAAGGGCAAAAGTCTTCATTAATTAAG 57.289 29.630 3.94 3.39 0.00 1.85
350 351 9.892130 TTTTTAAAGGGCAAAAGTCTTCATTAA 57.108 25.926 0.00 0.00 0.00 1.40
375 376 7.706607 GCTAACATTTCCTCAACTGTTCTTTTT 59.293 33.333 0.00 0.00 34.02 1.94
376 377 7.068716 AGCTAACATTTCCTCAACTGTTCTTTT 59.931 33.333 0.00 0.00 34.02 2.27
377 378 6.547510 AGCTAACATTTCCTCAACTGTTCTTT 59.452 34.615 0.00 0.00 34.02 2.52
378 379 6.064717 AGCTAACATTTCCTCAACTGTTCTT 58.935 36.000 0.00 0.00 34.02 2.52
379 380 5.625150 AGCTAACATTTCCTCAACTGTTCT 58.375 37.500 0.00 0.00 34.02 3.01
384 385 3.008049 ACGGAGCTAACATTTCCTCAACT 59.992 43.478 0.00 0.00 0.00 3.16
395 396 2.493030 GCGCCTACGGAGCTAACA 59.507 61.111 0.00 0.00 44.91 2.41
415 416 0.540454 GGTAAGTGGGTCCTAGGCAC 59.460 60.000 2.96 6.91 0.00 5.01
420 421 1.203162 TCGGTTGGTAAGTGGGTCCTA 60.203 52.381 0.00 0.00 0.00 2.94
442 443 1.545759 TCTTAAGAATCGCGTGCTCG 58.454 50.000 5.77 3.31 40.37 5.03
453 454 5.576563 TGATCCCCAACAGTTCTTAAGAA 57.423 39.130 13.99 13.99 0.00 2.52
459 460 2.716424 TCCTTTGATCCCCAACAGTTCT 59.284 45.455 0.00 0.00 33.85 3.01
464 465 2.041620 CTCCTTCCTTTGATCCCCAACA 59.958 50.000 0.00 0.00 33.85 3.33
466 467 2.358258 ACTCCTTCCTTTGATCCCCAA 58.642 47.619 0.00 0.00 0.00 4.12
483 485 2.144680 GTGTCGTCGTGCGCTACTC 61.145 63.158 9.73 1.72 41.07 2.59
489 491 2.418333 CGAGAAGTGTCGTCGTGCG 61.418 63.158 0.00 0.00 43.01 5.34
496 498 0.179134 GGTGATCCCGAGAAGTGTCG 60.179 60.000 0.00 0.00 39.77 4.35
498 500 0.608640 GTGGTGATCCCGAGAAGTGT 59.391 55.000 0.00 0.00 35.15 3.55
507 509 1.226888 GTACGAGCGTGGTGATCCC 60.227 63.158 5.69 0.00 0.00 3.85
508 510 1.585521 CGTACGAGCGTGGTGATCC 60.586 63.158 10.44 0.00 0.00 3.36
519 521 2.259618 CACTTGGATCAACCGTACGAG 58.740 52.381 18.76 9.56 42.61 4.18
528 535 2.892852 CCCAGAAAAGCACTTGGATCAA 59.107 45.455 0.00 0.00 0.00 2.57
529 536 2.517959 CCCAGAAAAGCACTTGGATCA 58.482 47.619 0.00 0.00 0.00 2.92
532 539 0.555769 ACCCCAGAAAAGCACTTGGA 59.444 50.000 0.00 0.00 0.00 3.53
534 541 2.031120 TCAACCCCAGAAAAGCACTTG 58.969 47.619 0.00 0.00 0.00 3.16
541 548 6.295249 GGAAATTCATTTCAACCCCAGAAAA 58.705 36.000 13.10 0.00 46.03 2.29
547 554 2.909662 TGGGGAAATTCATTTCAACCCC 59.090 45.455 17.48 16.49 45.22 4.95
559 566 1.638529 TTGGCGTTCATGGGGAAATT 58.361 45.000 0.00 0.00 37.23 1.82
560 567 1.275010 GTTTGGCGTTCATGGGGAAAT 59.725 47.619 0.00 0.00 37.23 2.17
570 578 6.018507 ACGTTTCTATATATGGTTTGGCGTTC 60.019 38.462 0.00 0.00 0.00 3.95
571 579 5.818857 ACGTTTCTATATATGGTTTGGCGTT 59.181 36.000 0.00 0.00 0.00 4.84
574 582 7.492352 AAGACGTTTCTATATATGGTTTGGC 57.508 36.000 0.00 0.00 0.00 4.52
593 601 1.453524 CTCTGCTGAACAACGAAGACG 59.546 52.381 0.00 0.00 45.75 4.18
594 602 2.474816 ACTCTGCTGAACAACGAAGAC 58.525 47.619 0.00 0.00 0.00 3.01
595 603 2.890808 ACTCTGCTGAACAACGAAGA 57.109 45.000 0.00 0.00 0.00 2.87
596 604 3.309682 TCAAACTCTGCTGAACAACGAAG 59.690 43.478 0.00 0.00 0.00 3.79
597 605 3.266636 TCAAACTCTGCTGAACAACGAA 58.733 40.909 0.00 0.00 0.00 3.85
627 635 3.006859 GCCCTGTACAAAGAGGCATTTTT 59.993 43.478 16.78 0.00 43.32 1.94
642 650 4.771903 TCGTAAATATTTGCTGCCCTGTA 58.228 39.130 11.05 0.00 0.00 2.74
644 652 3.627577 ACTCGTAAATATTTGCTGCCCTG 59.372 43.478 11.05 0.00 0.00 4.45
648 656 5.028375 GTCCAACTCGTAAATATTTGCTGC 58.972 41.667 11.05 0.00 0.00 5.25
649 657 5.255596 CGTCCAACTCGTAAATATTTGCTG 58.744 41.667 11.05 7.58 0.00 4.41
650 658 4.331717 CCGTCCAACTCGTAAATATTTGCT 59.668 41.667 11.05 0.00 0.00 3.91
693 998 2.065993 ATCTCGACCGTTCAACACTG 57.934 50.000 0.00 0.00 0.00 3.66
695 1000 4.665897 GCTTTAATCTCGACCGTTCAACAC 60.666 45.833 0.00 0.00 0.00 3.32
696 1001 3.430895 GCTTTAATCTCGACCGTTCAACA 59.569 43.478 0.00 0.00 0.00 3.33
697 1002 3.181523 GGCTTTAATCTCGACCGTTCAAC 60.182 47.826 0.00 0.00 0.00 3.18
698 1003 2.997986 GGCTTTAATCTCGACCGTTCAA 59.002 45.455 0.00 0.00 0.00 2.69
701 1006 1.203052 TCGGCTTTAATCTCGACCGTT 59.797 47.619 6.71 0.00 41.33 4.44
702 1007 0.813184 TCGGCTTTAATCTCGACCGT 59.187 50.000 6.71 0.00 41.33 4.83
703 1008 1.917273 TTCGGCTTTAATCTCGACCG 58.083 50.000 0.76 0.76 41.92 4.79
705 1010 4.648970 CCTTTTTCGGCTTTAATCTCGAC 58.351 43.478 0.00 0.00 0.00 4.20
706 1011 3.126343 GCCTTTTTCGGCTTTAATCTCGA 59.874 43.478 0.00 0.00 46.63 4.04
707 1012 3.426323 GCCTTTTTCGGCTTTAATCTCG 58.574 45.455 0.00 0.00 46.63 4.04
729 1035 2.437537 ACACACCGCAGCAACACA 60.438 55.556 0.00 0.00 0.00 3.72
777 1083 2.098770 TCGACGTGAGATCGAGAGACTA 59.901 50.000 0.00 0.00 46.97 2.59
779 1085 1.279152 TCGACGTGAGATCGAGAGAC 58.721 55.000 0.00 0.00 46.97 3.36
786 1092 3.495382 GACGAGTCGACGTGAGATC 57.505 57.895 21.50 0.00 46.52 2.75
797 1103 3.282426 GTCGTTACTACTCGACGAGTC 57.718 52.381 32.32 17.25 45.19 3.36
805 1111 2.355756 TGGCCGTATGTCGTTACTACTC 59.644 50.000 0.00 0.00 37.94 2.59
807 1113 2.098117 ACTGGCCGTATGTCGTTACTAC 59.902 50.000 0.00 0.00 37.94 2.73
809 1115 1.180029 ACTGGCCGTATGTCGTTACT 58.820 50.000 0.00 0.00 37.94 2.24
810 1116 2.000429 AACTGGCCGTATGTCGTTAC 58.000 50.000 0.00 0.00 37.94 2.50
811 1117 2.747396 AAACTGGCCGTATGTCGTTA 57.253 45.000 0.00 0.00 37.94 3.18
812 1118 2.340337 GTAAACTGGCCGTATGTCGTT 58.660 47.619 0.00 0.00 37.94 3.85
813 1119 1.733389 CGTAAACTGGCCGTATGTCGT 60.733 52.381 0.00 0.00 37.94 4.34
814 1120 0.918619 CGTAAACTGGCCGTATGTCG 59.081 55.000 0.00 0.00 39.52 4.35
815 1121 1.283736 CCGTAAACTGGCCGTATGTC 58.716 55.000 0.00 0.00 0.00 3.06
816 1122 0.108041 CCCGTAAACTGGCCGTATGT 60.108 55.000 0.00 0.00 0.00 2.29
817 1123 0.812412 CCCCGTAAACTGGCCGTATG 60.812 60.000 0.00 0.00 0.00 2.39
818 1124 1.523524 CCCCGTAAACTGGCCGTAT 59.476 57.895 0.00 0.00 0.00 3.06
819 1125 2.658064 CCCCCGTAAACTGGCCGTA 61.658 63.158 0.00 0.00 0.00 4.02
820 1126 4.024545 CCCCCGTAAACTGGCCGT 62.025 66.667 0.00 0.00 0.00 5.68
821 1127 4.024545 ACCCCCGTAAACTGGCCG 62.025 66.667 0.00 0.00 0.00 6.13
822 1128 2.360726 CACCCCCGTAAACTGGCC 60.361 66.667 0.00 0.00 0.00 5.36
823 1129 2.360726 CCACCCCCGTAAACTGGC 60.361 66.667 0.00 0.00 0.00 4.85
824 1130 2.360726 GCCACCCCCGTAAACTGG 60.361 66.667 0.00 0.00 0.00 4.00
825 1131 1.674322 CAGCCACCCCCGTAAACTG 60.674 63.158 0.00 0.00 0.00 3.16
826 1132 1.838073 CTCAGCCACCCCCGTAAACT 61.838 60.000 0.00 0.00 0.00 2.66
827 1133 1.376812 CTCAGCCACCCCCGTAAAC 60.377 63.158 0.00 0.00 0.00 2.01
828 1134 0.912487 ATCTCAGCCACCCCCGTAAA 60.912 55.000 0.00 0.00 0.00 2.01
829 1135 0.912487 AATCTCAGCCACCCCCGTAA 60.912 55.000 0.00 0.00 0.00 3.18
830 1136 0.912487 AAATCTCAGCCACCCCCGTA 60.912 55.000 0.00 0.00 0.00 4.02
831 1137 0.912487 TAAATCTCAGCCACCCCCGT 60.912 55.000 0.00 0.00 0.00 5.28
832 1138 0.179045 CTAAATCTCAGCCACCCCCG 60.179 60.000 0.00 0.00 0.00 5.73
833 1139 0.919710 ACTAAATCTCAGCCACCCCC 59.080 55.000 0.00 0.00 0.00 5.40
834 1140 1.473434 CGACTAAATCTCAGCCACCCC 60.473 57.143 0.00 0.00 0.00 4.95
835 1141 1.480954 TCGACTAAATCTCAGCCACCC 59.519 52.381 0.00 0.00 0.00 4.61
836 1142 2.482142 CCTCGACTAAATCTCAGCCACC 60.482 54.545 0.00 0.00 0.00 4.61
837 1143 2.482142 CCCTCGACTAAATCTCAGCCAC 60.482 54.545 0.00 0.00 0.00 5.01
838 1144 1.757118 CCCTCGACTAAATCTCAGCCA 59.243 52.381 0.00 0.00 0.00 4.75
839 1145 1.069358 CCCCTCGACTAAATCTCAGCC 59.931 57.143 0.00 0.00 0.00 4.85
840 1146 1.539280 GCCCCTCGACTAAATCTCAGC 60.539 57.143 0.00 0.00 0.00 4.26
841 1147 1.757118 TGCCCCTCGACTAAATCTCAG 59.243 52.381 0.00 0.00 0.00 3.35
842 1148 1.480954 GTGCCCCTCGACTAAATCTCA 59.519 52.381 0.00 0.00 0.00 3.27
843 1149 1.480954 TGTGCCCCTCGACTAAATCTC 59.519 52.381 0.00 0.00 0.00 2.75
844 1150 1.482593 CTGTGCCCCTCGACTAAATCT 59.517 52.381 0.00 0.00 0.00 2.40
845 1151 1.473434 CCTGTGCCCCTCGACTAAATC 60.473 57.143 0.00 0.00 0.00 2.17
846 1152 0.541863 CCTGTGCCCCTCGACTAAAT 59.458 55.000 0.00 0.00 0.00 1.40
847 1153 1.980052 CCTGTGCCCCTCGACTAAA 59.020 57.895 0.00 0.00 0.00 1.85
848 1154 2.656069 GCCTGTGCCCCTCGACTAA 61.656 63.158 0.00 0.00 0.00 2.24
849 1155 3.075005 GCCTGTGCCCCTCGACTA 61.075 66.667 0.00 0.00 0.00 2.59
861 1167 1.645402 AACTTCACTGGTGGGCCTGT 61.645 55.000 4.53 0.00 46.07 4.00
862 1168 0.890996 GAACTTCACTGGTGGGCCTG 60.891 60.000 4.53 0.00 39.33 4.85
863 1169 1.352622 TGAACTTCACTGGTGGGCCT 61.353 55.000 4.53 0.00 35.27 5.19
864 1170 0.251341 ATGAACTTCACTGGTGGGCC 60.251 55.000 0.00 0.00 0.00 5.80
865 1171 0.883833 CATGAACTTCACTGGTGGGC 59.116 55.000 0.00 0.00 0.00 5.36
866 1172 1.881973 CACATGAACTTCACTGGTGGG 59.118 52.381 0.00 0.00 0.00 4.61
867 1173 2.810274 CTCACATGAACTTCACTGGTGG 59.190 50.000 0.00 6.95 31.38 4.61
868 1174 3.470709 ACTCACATGAACTTCACTGGTG 58.529 45.455 0.00 11.28 31.57 4.17
869 1175 3.845781 ACTCACATGAACTTCACTGGT 57.154 42.857 0.00 0.00 0.00 4.00
870 1176 5.121298 CACATACTCACATGAACTTCACTGG 59.879 44.000 0.00 0.00 0.00 4.00
871 1177 5.928264 TCACATACTCACATGAACTTCACTG 59.072 40.000 0.00 0.00 0.00 3.66
872 1178 5.928839 GTCACATACTCACATGAACTTCACT 59.071 40.000 0.00 0.00 0.00 3.41
873 1179 5.928839 AGTCACATACTCACATGAACTTCAC 59.071 40.000 0.00 0.00 30.33 3.18
874 1180 5.928264 CAGTCACATACTCACATGAACTTCA 59.072 40.000 0.00 0.00 35.76 3.02
875 1181 5.163913 GCAGTCACATACTCACATGAACTTC 60.164 44.000 0.00 0.00 35.76 3.01
876 1182 4.692625 GCAGTCACATACTCACATGAACTT 59.307 41.667 0.00 0.00 35.76 2.66
877 1183 4.020751 AGCAGTCACATACTCACATGAACT 60.021 41.667 0.00 0.00 35.76 3.01
878 1184 4.248859 AGCAGTCACATACTCACATGAAC 58.751 43.478 0.00 0.00 35.76 3.18
879 1185 4.541973 AGCAGTCACATACTCACATGAA 57.458 40.909 0.00 0.00 35.76 2.57
880 1186 4.541973 AAGCAGTCACATACTCACATGA 57.458 40.909 0.00 0.00 35.76 3.07
881 1187 5.290400 CAGTAAGCAGTCACATACTCACATG 59.710 44.000 0.00 0.00 35.76 3.21
882 1188 5.185828 TCAGTAAGCAGTCACATACTCACAT 59.814 40.000 0.00 0.00 35.76 3.21
883 1189 4.522789 TCAGTAAGCAGTCACATACTCACA 59.477 41.667 0.00 0.00 35.76 3.58
884 1190 4.859798 GTCAGTAAGCAGTCACATACTCAC 59.140 45.833 0.00 0.00 35.76 3.51
885 1191 4.082190 GGTCAGTAAGCAGTCACATACTCA 60.082 45.833 0.00 0.00 35.76 3.41
886 1192 4.158764 AGGTCAGTAAGCAGTCACATACTC 59.841 45.833 0.00 0.00 35.76 2.59
887 1193 4.081972 CAGGTCAGTAAGCAGTCACATACT 60.082 45.833 0.00 0.00 39.81 2.12
888 1194 4.177026 CAGGTCAGTAAGCAGTCACATAC 58.823 47.826 0.00 0.00 0.00 2.39
889 1195 3.368427 GCAGGTCAGTAAGCAGTCACATA 60.368 47.826 0.00 0.00 0.00 2.29
907 1213 3.907260 ATGTGCACACCTCGGCAGG 62.907 63.158 24.37 2.01 46.87 4.85
911 1238 2.393768 GCTGATGTGCACACCTCGG 61.394 63.158 24.37 21.94 36.03 4.63
924 1251 1.137086 GTGAGTATGGGTCACGCTGAT 59.863 52.381 0.00 0.00 35.31 2.90
967 1295 1.032657 GTGCTCTCTCTAGCGGGACA 61.033 60.000 0.00 0.00 45.85 4.02
971 1303 0.100325 CAGTGTGCTCTCTCTAGCGG 59.900 60.000 0.00 0.00 45.85 5.52
990 1357 1.867698 GCTCTACTCATCTTCCGCTGC 60.868 57.143 0.00 0.00 0.00 5.25
995 1362 2.627699 CTCCCTGCTCTACTCATCTTCC 59.372 54.545 0.00 0.00 0.00 3.46
1079 1446 1.338020 CTTGGTTGGACTTGAACCTGC 59.662 52.381 0.00 0.00 43.00 4.85
1089 1456 0.966920 TCTCGGTCTCTTGGTTGGAC 59.033 55.000 0.00 0.00 0.00 4.02
1220 1587 5.879669 TGTGAGACACAATCGGGTTCGATA 61.880 45.833 1.99 0.00 45.24 2.92
1221 1588 5.177472 TGTGAGACACAATCGGGTTCGAT 62.177 47.826 1.99 0.00 43.56 3.59
1305 1672 8.458212 AGTAACCGAAATCTAAAGAACTTACG 57.542 34.615 0.00 0.00 0.00 3.18
1349 1716 4.037089 TCTGAACTTGTGAAGCAGTACGTA 59.963 41.667 0.00 0.00 0.00 3.57
1387 1761 4.034858 GCAATGGACGATGCATCTATATGG 59.965 45.833 23.73 9.99 42.12 2.74
1408 1782 1.413118 TCTGACTGAAGTGGTCTGCA 58.587 50.000 0.00 0.00 35.04 4.41
1414 1788 2.167281 ACGGATCATCTGACTGAAGTGG 59.833 50.000 0.00 0.00 0.00 4.00
1430 1804 4.222810 TGAGTTGCTATATATGCCACGGAT 59.777 41.667 0.00 0.00 32.32 4.18
1434 1808 6.036517 GCTATGTGAGTTGCTATATATGCCAC 59.963 42.308 0.00 0.15 0.00 5.01
1620 1994 2.050533 TTTGTTGATGCGCGCACC 60.051 55.556 39.05 30.68 0.00 5.01
1687 2061 4.479158 AGAACACCCTCCTTTTGCATAAA 58.521 39.130 0.00 0.00 0.00 1.40
1765 2139 1.600023 CAACACCCAACACGGTACAT 58.400 50.000 0.00 0.00 33.67 2.29
1779 2153 4.980903 CACGCGGCCAAGCAACAC 62.981 66.667 12.47 0.00 36.85 3.32
1781 2155 4.389576 CTCACGCGGCCAAGCAAC 62.390 66.667 12.47 0.00 36.85 4.17
1782 2156 4.927782 ACTCACGCGGCCAAGCAA 62.928 61.111 12.47 0.00 36.85 3.91
1806 2180 1.067416 CCCGCAAGCGCTCTATGTA 59.933 57.895 12.06 0.00 38.24 2.29
1827 2202 5.070446 TGGATAGCAGTAATTACCACAGAGG 59.930 44.000 12.05 0.00 45.67 3.69
1833 2208 4.901849 AGCTCTGGATAGCAGTAATTACCA 59.098 41.667 12.05 0.59 45.30 3.25
1841 2216 3.379452 ACCTTAAGCTCTGGATAGCAGT 58.621 45.455 0.00 0.00 45.30 4.40
1849 2224 3.910627 ACCCCATATACCTTAAGCTCTGG 59.089 47.826 0.00 0.00 0.00 3.86
1963 2339 6.628919 ACATAGCCCGTGGATAAATAAAAC 57.371 37.500 0.00 0.00 0.00 2.43
1985 2361 7.675062 ACTCCATGTCTCCATCTTATCATAAC 58.325 38.462 0.00 0.00 0.00 1.89
2021 2397 7.375808 GTGAATATGTTTACCATGCACAATACG 59.624 37.037 0.00 0.00 34.39 3.06
2065 2441 3.689347 TGTCTGGACTTCATGGAAATGG 58.311 45.455 0.00 0.00 0.00 3.16
2078 2455 8.556213 TTAACCAACTATTATGTTGTCTGGAC 57.444 34.615 6.63 0.00 44.01 4.02
2098 2475 3.836949 TGGTGAACGTACGATCTTAACC 58.163 45.455 24.41 21.65 0.00 2.85
2172 2567 8.092687 TCACACATATACTCATCCTCATCATTG 58.907 37.037 0.00 0.00 0.00 2.82
2173 2568 8.198807 TCACACATATACTCATCCTCATCATT 57.801 34.615 0.00 0.00 0.00 2.57
2179 2574 7.890515 TGAGATTCACACATATACTCATCCTC 58.109 38.462 0.00 0.00 0.00 3.71
2187 2582 9.891828 TTTGTGTTTTGAGATTCACACATATAC 57.108 29.630 4.90 0.00 46.69 1.47
2252 2647 3.746940 AGATCGAAAGTTTTTCCCGGAA 58.253 40.909 0.73 0.00 0.00 4.30
2253 2648 3.412237 AGATCGAAAGTTTTTCCCGGA 57.588 42.857 0.73 0.00 0.00 5.14
2254 2649 5.353123 TGAATAGATCGAAAGTTTTTCCCGG 59.647 40.000 0.00 0.00 0.00 5.73
2255 2650 6.417191 TGAATAGATCGAAAGTTTTTCCCG 57.583 37.500 0.00 0.00 0.00 5.14
2256 2651 8.079809 TGTTTGAATAGATCGAAAGTTTTTCCC 58.920 33.333 0.00 0.00 33.14 3.97
2257 2652 9.626045 ATGTTTGAATAGATCGAAAGTTTTTCC 57.374 29.630 0.00 0.00 33.14 3.13
2261 2656 9.778993 CATGATGTTTGAATAGATCGAAAGTTT 57.221 29.630 0.00 0.00 33.14 2.66
2262 2657 8.400947 CCATGATGTTTGAATAGATCGAAAGTT 58.599 33.333 0.00 0.00 33.14 2.66
2263 2658 7.467811 GCCATGATGTTTGAATAGATCGAAAGT 60.468 37.037 0.00 0.00 33.14 2.66
2264 2659 6.854892 GCCATGATGTTTGAATAGATCGAAAG 59.145 38.462 0.00 0.00 33.14 2.62
2268 2663 4.377738 CCGCCATGATGTTTGAATAGATCG 60.378 45.833 0.00 0.00 0.00 3.69
2288 2683 0.874390 TCTCATGTTCTTTGTGCCGC 59.126 50.000 0.00 0.00 0.00 6.53
2291 2686 6.017934 TCTGTTACTTCTCATGTTCTTTGTGC 60.018 38.462 0.00 0.00 0.00 4.57
2303 2698 9.166173 CATGGATGTAATTTCTGTTACTTCTCA 57.834 33.333 10.50 8.31 38.13 3.27
2322 2717 1.651987 GTGGTGTACGGACATGGATG 58.348 55.000 2.42 0.00 38.04 3.51
2336 2731 3.871594 GCTTGTAGTATTGCTAGGTGGTG 59.128 47.826 0.00 0.00 0.00 4.17
2346 2741 4.045104 CCGCTCTAGTGCTTGTAGTATTG 58.955 47.826 14.40 0.00 0.00 1.90
2354 2749 1.812922 CAGCCCGCTCTAGTGCTTG 60.813 63.158 14.40 6.63 30.08 4.01
2362 2757 3.780173 GCTCCTTCAGCCCGCTCT 61.780 66.667 0.00 0.00 43.17 4.09
2368 2763 2.507324 GTCGACGCTCCTTCAGCC 60.507 66.667 0.00 0.00 46.74 4.85
2370 2765 1.512310 GACGTCGACGCTCCTTCAG 60.512 63.158 35.92 8.80 44.43 3.02
2406 2801 0.815615 CTACAGATTTGCCCGGCTCC 60.816 60.000 11.61 0.00 0.00 4.70
2422 2817 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
2425 2820 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
2446 2841 1.004862 AGTCCTTTGGGGCTTTAGCTC 59.995 52.381 0.00 0.00 46.98 4.09
2447 2842 1.076438 AGTCCTTTGGGGCTTTAGCT 58.924 50.000 1.26 0.00 46.98 3.32
2451 2846 1.547901 GCACTAGTCCTTTGGGGCTTT 60.548 52.381 0.00 0.00 46.98 3.51
2466 2861 2.294074 GGTTGTTGTTCTGGTGCACTA 58.706 47.619 17.98 10.29 0.00 2.74
2469 2864 0.678366 ACGGTTGTTGTTCTGGTGCA 60.678 50.000 0.00 0.00 0.00 4.57
2490 2885 3.146618 TCTACGTTTCTCTTCATCGGC 57.853 47.619 0.00 0.00 0.00 5.54
2543 2938 2.860735 GGATTCGGTCTTCGTTCATCTG 59.139 50.000 0.00 0.00 40.32 2.90
2547 2942 2.616960 CATGGATTCGGTCTTCGTTCA 58.383 47.619 0.00 0.00 40.32 3.18
2552 2947 2.315925 TCTGCATGGATTCGGTCTTC 57.684 50.000 0.00 0.00 0.00 2.87
2568 2963 2.730090 GCATTTGTCTTCGGTGCATCTG 60.730 50.000 0.00 0.00 35.93 2.90
2570 2965 1.468054 GGCATTTGTCTTCGGTGCATC 60.468 52.381 0.00 0.00 37.53 3.91
2573 2968 1.154225 CGGCATTTGTCTTCGGTGC 60.154 57.895 0.00 0.00 35.17 5.01
2577 2972 1.011968 TCGGTCGGCATTTGTCTTCG 61.012 55.000 0.00 0.00 0.00 3.79
2578 2973 1.153353 TTCGGTCGGCATTTGTCTTC 58.847 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.