>input_sequence_74100
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------ATGAGTAGAGCAGGGAGCAGCGGGGGCGGCCGGAGCTCTCTGGGCTACCTCTTTGAGCCGGATGAGATCTTCCC
GATCCGCAGGTTCAAGTCCAACCAAGAGACCGAGAAGCCCTCGGAAGACAGCATCGTCATGCAGCCGCAGGACGACAAGG
TCATGACCGGTGATGAAGCAGACCACCAAGAACCGCCGTATCAGGCTCCTCCCAAGAGAGAGGAGGTATCGAACCCGATT
GTGTCTCACAGACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTAATCACCGTAAGTTC
TTTAGATTTCGGTTACTTTTATTTACTGTAAGTAGTACGTACTGCTTCACAAG-------TTCAGATCGTTGGTTTCTGT
CCATATAGATGCATCGTCCATTGCAGACCACTTCAGTCAGATGATCCGTGGCATATATAGCAACTCACATAGCATGCATG
CATGCATGTGCTTGTAATCAACATGTGCGTCTTGGCTATTTTGCCTTGCAGGACCGACCGTCGACGAGGGTCCGGTGTGC
ACCGGGAGGGGCGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGA-------------
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>chr2D_1_TraesCS2D01G394000
GGGAGGGGGGAGGTTGGTGTGGTGGCGCTTAGGGTTTCACCACCCGAGTCGCCACGGAGGGGCGGCACGAGGAGTGGGGA
GGGGCAACCCGGTCTTGCTATTGTTCAAAATTTTCGACCTATAAAGGCTATGGCTTCTATTACAATGCTTGTTTCTTGGG
AATTGTGGAACGAGGGCAATGCAAGGATCTTCAACAACAACTCGTCGACTATAATCATGGCCAAAATCCGGTGCGAGACG
AAGAATTGAGGTTTGGCGGGTGCAACTCATTTGTGTAATCTTATGCCGGAAGAGTAGGCTTTTGTTTTACCGGCTACTTG
CTGCCAAACTTGTTGTAAACTCTCTCTTAATTAATGAAGACTTTTGCCCTTTAAAAAAAAGAACAGTTGAGGAAATGTTA
GCTCCGTAGGCGCTGGTGCCTAGGACCCACTTACCAACCGATCGAGCACGCGATTCTTAAGAACTGTT-GGGGATCAAAG
GAAGGAGTAGCGCACGACGACACTTCTCGGGATCACCACGC-----TCGTACGGTTGATCCAAGTGCTTTTCTGGGGTTG
AAATGAA-TTTCCCCATGAACGCCAAACCATATATAGAAACGTCTTCGTTGTTCAGCAGAGTTTGAAATTAAAAAAAAAT
GCCTCTTTGTACAGGGCA-GCAAATATTTACGAGTTGGACGGCGTC----------------------------------
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----------------------TGTTTAACGTATGATCAGTGTTGAACGGTCG-AGATTAAAGCCGAAAAAGGCTGTGTT
GCTGCGGTGTGTGGCCATGCCTGAAGGCGGCCTCGTGCCTCCTAGTCTCTCGATCTCACGTCGACTCGTCGAGTAGTAAC
GACATACGGCCAGTTTACGGGGGTGGCTGAGATTTAGTCGAGGGGCACAGGCCCACCAGTGAAGTTCATGTGAGTATGTG
ACTGCTTACTGACC---------------------TGCCGAGGTGTGCACATC-AGCGTGACCCATACTCACACCAGCTC
TATAAGTAGCAACTT----GTCCCGCTAGAGAG-----------------------------------AGCACACTGCAG
CGGAAGATGAGTAGAGCAGGGAGCAGCGGGGGCGGCCGGAGCTCTCTGGGCTACCTCTTTGAGCCGGATGAGATCTTCCC
GATCCGCAGGTTCAAGTCCAACCAAGAGACCGAGAAGCCCTCGGAAGACAGCATCGTCATGCAGCCGCAGGACGACAAGG
TCATGACCGGTGATGAAGCAGACCACCAAGAACCGCCGTATCAGGCTCCTCCCAAGAGAGAGGAGGTATCGAACCCGATT
GTGTCTCACAGACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTAATCACCGTAAGTTC
TTTAGATTTCGGTTACTTTTATTTACTGTAAGTAGTACGTACTGCTTCACAAG-------TTCAGATCGTTGGTTTCTGT
CCATATAGATGCATCGTCCATTGCAGACCACTTCAGTCAGATGATCCGTGGCATATATAGCAACTCACATAGCATGCATG
CATGCATGTGCTTGTAATCAACATGTGCGTCTTGGCTATTTTGCCTTGCAGGACCGACCGTCGACGAGGGTCCGGTGTGC
ACCGGGAGGGGCGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGATGAGCCGGTGCGC
GCATCAACAAAGAGTTTATGACTTGATCTATTTATGCAAAATTGCCTCAAAAAAGTTCTATTTATGCAAAAGGAGGGTGT
TCTAATTTATGTAGCACGAGTGTGGCATATGCCTTGCATGGCCTACATATCTACGTGCATGTACCGTGTTGGGTGTTGCT
TGGCCGCGTGAGTGTCACAT-ACATAGAGCGCTTGCGGGGACCTCTGTGGTAATTACTGCTATCCAGAGCTTAAGGTATA
TGGGGTTTAAGTGATGATTGGGTGTTCAATTCAAATGGTTTTGTTACTCTTGTG-GTTAATGTGTAATTCCAAGAGTGAA
TATAGATTGTTGTAACTTGTTTTATTTATCCACGGGCTATGTTATGATAAGATGGAGACATGGAGTCATGAGGCATCGTA
TTGTGCATGGTAAACATATTCACATCTAGCATATACTAGTCCA-TTTCCATGAAGTCCAGACAACATAATAGTTGG----
------TTAAGATCGTACGTTCACCATGTCCTAGACATGAA--------ACTTTGACTTCATTGAGTAGTGAAATGAAGA
TGTGTTCAATGATGAGGATGAGTATATGTGTGAATCTCAAAACACAAACTCATTATAGATCTAAGGATTACCGTATATAT
ATTTTTTTCCGGGAAAAACTTTCGATCTATTCAAACATCATGGCGGCACAAAGAACATGAGAAGTAACAGAAATTACATC
CATGTCCGTACACCACCTAGCAATACTACAAGCACTAGAGCGGGCTGAAGGAGCGTCGACGTCATCGCCCCTCCCCCACC
GGAGCCGGGCAAATCTGTAGTAGACAGTCGGGAAGTCGTCGAGCTAAAGCCCCAAAGGACTAGTGCACCAGAACAACAAC
CGTCGCCGATGAAGAGAAACGTAGATCAGAAGGATTCAACCTGTAGACATATGAACGCAGATGAACGAAGACCGAATCCA
TGCAGATGCACCGAAGACAAATGCCGACCGAATCCTGTCGTGGAATTG
>chr2A_381
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------------------------------------------------------------GAACTGTTGAGGAAAAGGTG
GATCCGTACGCGCTGCTGCCCAGGACCCACTTACCAACCGATTGAGCACGCGACTCTTACGAACCGGTGGGGGATCAAAG
GAAGCAGTAGTGCACGATGCCACTTCTCTTGATCACCACGTTCAGTTCGTACGGCCGAGCAAAGTGCATTTCTAGGGTTG
AAATGGCTTTTCCCCATAGACACCAAACCATAGAAACGTGACC--TCGTTTCTCAGCAGAGTTTGAAATTT----AAAAT
GCCTCTTTGCATAGGCAGGGCAAATATTTACGAGTTGGACGGCGTCTTTTTTTTTTTAACATAGTACAAACGCAAGAGCT
CATATACACGCGCATACACTTATCCCTATGAACGCACACACGCACACTCTATCTCTATGAGCACTTTCGAAAGACTGCAT
CGGCATATTATCTTGAAATTTACGAAGTCGCGACGAACGTCTCCTCCCAGTAAATGTGCATCGTCGAAAATCCTGAAATA
AATACATGAATAAATACGAAAACCAGGATTTAAACCCTGATGGACTGGGGATACCACATTCTCTCTAACTATCCAACCAC
AAGTTGGTTCGCTGGCGGCGTCTGTTTAACGTATGATGATCACTGTTGGACGCAAGATTGAACCCGAAAAAGGCAGTGTT
GCTGCGGTGTGTGGCCATGTCTGAAGGTGGCCTCGTGCCTCCCACTCTCTCACGTATGTATCCTTGGTTCAATTC-----
---------------------------------------------------------------------------ATGTG
ACTGCTTACTGATCGATATGCCCGGTTGATTCCGATGTCGAGGTGTGCACCCATAGCGTGACCCATACTCACACCAGCTC
TATAAGTAGCAACTCAA----CACGCTAGACAGAGAGAGAGAGAGAGAGAACACAGCAACACAAGCTTAGCACACTTCGG
CAGAAGATGAGTAGATCAGGGAGCAGCGGGGGCGGCCGGAGCTCTCTGGGCTACCTCTTTGAGCCGGATGAGATCTTCCC
GATCCACAGGTTCAAATCCAATCAAGAGACCGAGAAGCCCTCGGAAGAGGGCATCGTCATGCAGCCGCAGGACGACAAGG
TCATGACCGGTGATGAAGCAGACCACCAAGAACTGCCGTACCAGGCTCCTCCCAAGAGAGAGGAGGACTGGAACCCGATT
GTTTCTCGCAGACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTGATCACTGTAAGTTC
TTTAAATTTCTGTACTTTGTAATCACTGTATAA-----GTACTGCTTTAGAAG-------TTCAGATCGTTGGTTTCTGT
ACATA-AGATGCATCGTCCAT-GCAGATCACTTCAGTCAGATGCTCCATGACAT--------ACTCACATAGCCTGCATG
CATGAGCCTGTAA-TAATCAACATGTGCGTCTTCGCTATTTCGCCTTGTAGGACCGACCGTCGACGAGGGTCCGGTGTGC
ACCGGGAGGGGCGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGATGGCACACACCCA
GTCCAC---AAGAGTTCATGACTCGGTCGATCTATTTATGTTTTTCACCTGCGG--------TATGCGAAAGAAAAGTAT
TCTAATTTATGTAGCACGAGCTTGTCT------TTGCATGACCTATATATCTACGTACCTGTACCGTGTTG-------CT
TGGTCGGTGTGAACCATGGACGCTTAATATCTTTGTT------------GTAATTGCTGCTATGCAGAGCTTAAGTTATA
TGGGGTTTAAGTTATGATTGGGTGTTCAATTCAAATGGTTTTCTTACTCTTATGAGTTACTGTGTAATTCCAAGAGTGAA
TATAGACTGTTGTAATTTATTTTGTTTATCCACGGGATGTATTATGAGGTA--------ATGGAGTCATGAGGCATTCCA
TTATCCATGTTAAACAGATTCACATCTAGCTTATACTAGTTCGTTTTCCATGAAATTCAGAAGAAAAAAGATAGTTGGTT
AAGAACTTAAGATTGCACATTCACGAAGCCCTAGATGTGGAAACACTGTACTTCGACTTCATTGAGTAGTGAAATGAAGA
TC-GTTGGATGATAAGGATGATTATATGTGTGAATCTCAAACCACAAACTCATTATGGATCTAAGGATCAC---------
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>chr2B_922
CACC----------------------------------------------------------------------------
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---------------------------------------------------TC-AGCGTGTCCCATACTCACACCAGCTC
TATAAGTAGCGACTCCATCGTCACGCTAGAGAGAGA--------------------------AAGCTCAGCACATTTGAG
CAGAAAATGAGTAGAGCAGGGAGCAGCGGGGGTGGCCGGAGCTCTCTAGGCTACCTCTTTGAGCCGGATGAGATCTTCCC
GATCCACAAGTTCAAATCCAACCAAGAGACCGAGAAGCTCTCGGAAGACAGCATCGTCATGCAGCCGCAGGACGACAAGG
TCATGACCGGTGATGAAGCAGACCACCAAGAACCGCCGTATAAGGCTCCTCCGAAGAGAGAGGAC---TCGAACCCGATT
GTGTCTCACAGACCTGCTTCCATCATCTACCACACTAACCAATCGGGCAACAACACCGGGCTTCTAATCACTGTAAGTTC
TTTAGATTTCGGTTACTTTTATTTACTGTAAGTAGCACGTACTGCTTCACAAGTTCAGAATTCAGATCGTTGGTTTCTGT
ACATATAGATGCATAGTCCAT-GCAGATCACTTCAGTCAGATGCTCCATGGCATATATAGCAACTCACATAGCATGCATG
CATGCATGAGCTTGTAATCAACATGTGCGTCTTGGCTATTTTGCCTTGCAGAACCGACCGTCGACGAGGGTCCGGTGTGC
ACCGGGAGGGGCGTCGTCGCTTGGATTTCTCTTCTCTTCGGAGACGAACGTAACTGACGACAAATGATGGGCCCGTGCGC
GCATCAACAAAGAGTTTATGACTTGATCTATTTATGCAAAATTGCCTCAAAAAAGTTCTACTTATGCAAAAGGAGGGTGT
TCTAATTTATGTAGCACGAGTGTGGCATATGCCCTGCATGGCCTACATATCTACGTGCGTGTACCGTGTTG-------CT
TGGCCGCGTGAGTGTCACAACACATAGAGCGCTTGCCGGGATCTCTGCGGTATAGTA--------------TAAGGTATA
TGGGGTTTAAGTGATGATTGGGTGTTCAATTCAAATGGTTTTGTTACTCTTGTG-GTTAATGTGTAATTCCAAGAGTGAA
TATAGATTGTTGTAACTTATTTTATTTATCCACGGGCTATATTATGATACGATGGAGTCATGC--------GGCATTGTA
TTGTGCAGGGTAAACATATTCACATCTAGCACATACTAGTTCA-TTTCGATGAAATCCAGACAACATGATAGTTCG----
------TTAAGATCGTACGTTCACCATGTCCTAGACATGAAAT--------TTTAACTTCATTGAGTAGTGAAATGAATA
TGTGTTTGATGATAATGATGACTATATGTGTGAATCTCAAAACACAAACTCATTATAGATCTAAGGATTACCGTGTATAT
GTTTTTCCGGAATTT----TTTTGATCTATTCAAACATCATGACGACACAAAGAACACGAGAAGTAACAGAAATTATATC
CATGTCCGTAGACCACCTAGTAATACTAGAAGCACTGGAGCGAGTTGAAGGAGCGCCGCCGTCATCGCCCCTCCCCCACC
AGAGCCGGGCAAATCTATATTAGACAGTCGGGAAGTCGTCAGGCT-AAGCCCCAAAGGACCAGCGCACCAGAACATCAAC
CGTCACCGATGAAGAGAAACGTAGATCAGAAGGATTCAACCTGTAGACATATGAACG-AGACGAACAAAGACCAGATCCA
TGAACATACACTAAAGACAAATGCCGACCGAATCC-------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------S-S-S
-S------S------S----S---------------------S----------S-----S----S-S-------------
----S-----S------S-S--------SS----------S-------------SS--S-S------S-----S------
-----SS----------SS--S----------S-S-SSSSSSSSS-----SS------------------SSSSS-----
---------S-S---SSS--------------------------------------------------------------
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-------------------------------------S-SSSS--SSS-SSSS------S--S-----------S-----
-------------------S-------S--------------S-S------SSSSSSSSS--SSSSSS--S-S-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
------------S------------------------S------------S-----------------------------
--------------S-------S-----------------------------------------------------S---
-S------------------------------------------------------------------------------
-----S---------S----------------------------------------------------------------
------------------------------------------------------------------SS------------
-----------------------------------------------------------------------S--------
-----------------------------------S--------------------------------------------
S--------------------S-----S---------------S---S--------------------------------
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---------------------------------------------------------------------S---S------
------------------------------------------------------------S-------------------
----------------------------------------------------------S------------SSSSSSS--
-------------------S----------------S----S-----S-------S-------S----------------
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------------------S---------------------S--------S-------S------------------S---
----------------------------------------S-------------S-------------------S-----
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------SS-----S-------S----------------------------------------------------S-----
S-----SSSSSSSSSSSSS---S-------------------S--S-----------S------------------S---
----------S---------S-------S-------S-----S-S----------S--S---------------------
S---------------S--S--------------------SS---S--------------S--S-----------S----
----S----------------------------------------------------S---S----S------SS-----
--S-S--S---SS----------------------SSSSSSSSSSSSS
>forward_176
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----------------------------------------------------------------------------TGGG
AATTGTGGAACGAGGG----------------------------------------------------------------
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>reverse_1456
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---------------GTCCAACCAAGAGACCGAGA---------------------------------------------
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>forward_1108
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------------------------------------------------CTCGATCTCACGTCGACTCG------------
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>reverse_2864
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---------------------------------------------------------------TGCACCAGAACAACAAC
CGT-----------------------------------------------------------------------------
------------------------------------------------
