Multiple sequence alignment - TraesCS2D01G390700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G390700 chr2D 100.000 2684 0 0 1 2684 498095475 498092792 0.000000e+00 4957
1 TraesCS2D01G390700 chr2A 86.087 2221 170 49 474 2637 642719108 642716970 0.000000e+00 2261
2 TraesCS2D01G390700 chr2A 79.245 212 32 11 11 213 62396651 62396859 1.300000e-28 137
3 TraesCS2D01G390700 chr2B 91.278 1330 63 33 393 1694 584467103 584465799 0.000000e+00 1764
4 TraesCS2D01G390700 chr2B 84.124 970 86 28 1710 2625 584465812 584464857 0.000000e+00 876
5 TraesCS2D01G390700 chr1D 87.541 305 22 7 4 292 469935064 469934760 3.310000e-89 339
6 TraesCS2D01G390700 chr6D 86.913 298 25 11 7 291 5048536 5048832 3.330000e-84 322
7 TraesCS2D01G390700 chr3B 83.607 305 29 14 2 292 99994449 99994152 1.580000e-67 267
8 TraesCS2D01G390700 chr3B 83.612 299 28 13 2 286 696678077 696677786 7.370000e-66 261
9 TraesCS2D01G390700 chr5D 91.667 192 13 3 2 191 396278233 396278423 2.050000e-66 263
10 TraesCS2D01G390700 chr3D 83.737 289 30 11 2 278 511682638 511682921 9.530000e-65 257
11 TraesCS2D01G390700 chr5B 82.315 311 35 11 2 292 245597748 245598058 4.440000e-63 252
12 TraesCS2D01G390700 chr7B 81.728 301 38 15 4 293 603827629 603827923 4.470000e-58 235
13 TraesCS2D01G390700 chrUn 80.569 211 30 8 93 292 74619354 74619144 4.630000e-33 152
14 TraesCS2D01G390700 chr1A 85.714 126 17 1 11 135 559939525 559939650 6.030000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G390700 chr2D 498092792 498095475 2683 True 4957 4957 100.000 1 2684 1 chr2D.!!$R1 2683
1 TraesCS2D01G390700 chr2A 642716970 642719108 2138 True 2261 2261 86.087 474 2637 1 chr2A.!!$R1 2163
2 TraesCS2D01G390700 chr2B 584464857 584467103 2246 True 1320 1764 87.701 393 2625 2 chr2B.!!$R1 2232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.035739 ACGGTTGGCCTACGAAACAT 59.964 50.0 18.51 0.0 0.00 2.71 F
1228 1241 0.030773 TTCGCTCGATCGCAGCTTAT 59.969 50.0 25.94 0.0 34.45 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1234 1247 0.180406 GTGGACAAGTGGTGGTCAGT 59.820 55.0 0.0 0.0 35.74 3.41 R
2646 2805 0.108615 CTCGATGACAGGTGGTGACC 60.109 60.0 0.0 0.0 43.52 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.079182 ACGACAGTTCTTTTATGTGAAAACA 57.921 32.000 0.00 0.00 0.00 2.83
25 26 7.531716 ACGACAGTTCTTTTATGTGAAAACAA 58.468 30.769 0.00 0.00 0.00 2.83
26 27 8.188139 ACGACAGTTCTTTTATGTGAAAACAAT 58.812 29.630 0.00 0.00 0.00 2.71
27 28 9.019764 CGACAGTTCTTTTATGTGAAAACAATT 57.980 29.630 0.00 0.00 0.00 2.32
40 41 5.421676 GAAAACAATTTTTCGATCGGAGC 57.578 39.130 16.41 0.00 40.90 4.70
41 42 2.806288 ACAATTTTTCGATCGGAGCG 57.194 45.000 16.41 9.74 0.00 5.03
42 43 2.343101 ACAATTTTTCGATCGGAGCGA 58.657 42.857 15.02 15.02 41.13 4.93
43 44 2.093783 ACAATTTTTCGATCGGAGCGAC 59.906 45.455 18.79 0.00 39.18 5.19
44 45 0.921347 ATTTTTCGATCGGAGCGACG 59.079 50.000 18.79 4.25 39.18 5.12
45 46 1.074319 TTTTTCGATCGGAGCGACGG 61.074 55.000 18.79 0.00 39.18 4.79
46 47 2.203972 TTTTCGATCGGAGCGACGGT 62.204 55.000 18.79 0.00 39.18 4.83
47 48 2.203972 TTTCGATCGGAGCGACGGTT 62.204 55.000 18.79 0.00 39.18 4.44
48 49 2.860690 TTCGATCGGAGCGACGGTTG 62.861 60.000 18.79 0.00 39.18 3.77
49 50 2.582498 GATCGGAGCGACGGTTGG 60.582 66.667 0.00 0.00 39.18 3.77
50 51 4.814294 ATCGGAGCGACGGTTGGC 62.814 66.667 0.00 0.00 39.18 4.52
53 54 3.766691 GGAGCGACGGTTGGCCTA 61.767 66.667 3.32 0.00 0.00 3.93
54 55 2.508663 GAGCGACGGTTGGCCTAC 60.509 66.667 9.03 9.03 0.00 3.18
55 56 4.430765 AGCGACGGTTGGCCTACG 62.431 66.667 11.31 11.54 35.37 3.51
56 57 4.424566 GCGACGGTTGGCCTACGA 62.425 66.667 18.51 0.00 34.66 3.43
57 58 2.259204 CGACGGTTGGCCTACGAA 59.741 61.111 18.51 0.00 34.66 3.85
58 59 1.373246 CGACGGTTGGCCTACGAAA 60.373 57.895 18.51 0.00 34.66 3.46
59 60 1.620413 CGACGGTTGGCCTACGAAAC 61.620 60.000 18.51 7.71 34.66 2.78
60 61 0.600782 GACGGTTGGCCTACGAAACA 60.601 55.000 18.51 0.00 0.00 2.83
61 62 0.035739 ACGGTTGGCCTACGAAACAT 59.964 50.000 18.51 0.00 0.00 2.71
62 63 1.161843 CGGTTGGCCTACGAAACATT 58.838 50.000 11.31 0.00 0.00 2.71
63 64 1.538075 CGGTTGGCCTACGAAACATTT 59.462 47.619 11.31 0.00 0.00 2.32
64 65 2.030628 CGGTTGGCCTACGAAACATTTT 60.031 45.455 11.31 0.00 0.00 1.82
65 66 3.313690 GGTTGGCCTACGAAACATTTTG 58.686 45.455 11.31 0.00 0.00 2.44
66 67 3.004944 GGTTGGCCTACGAAACATTTTGA 59.995 43.478 11.31 0.00 0.00 2.69
67 68 4.500035 GGTTGGCCTACGAAACATTTTGAA 60.500 41.667 11.31 0.00 0.00 2.69
68 69 5.227152 GTTGGCCTACGAAACATTTTGAAT 58.773 37.500 3.32 0.00 0.00 2.57
69 70 5.461032 TGGCCTACGAAACATTTTGAATT 57.539 34.783 3.32 0.00 0.00 2.17
70 71 5.848406 TGGCCTACGAAACATTTTGAATTT 58.152 33.333 3.32 0.00 0.00 1.82
71 72 6.284459 TGGCCTACGAAACATTTTGAATTTT 58.716 32.000 3.32 0.00 0.00 1.82
72 73 6.763610 TGGCCTACGAAACATTTTGAATTTTT 59.236 30.769 3.32 0.00 0.00 1.94
73 74 7.042389 TGGCCTACGAAACATTTTGAATTTTTC 60.042 33.333 3.32 3.42 0.00 2.29
74 75 7.042389 GGCCTACGAAACATTTTGAATTTTTCA 60.042 33.333 0.00 0.00 38.04 2.69
108 109 9.979578 GAGAATCTATAGTGATGACATCAACTT 57.020 33.333 19.57 10.83 41.69 2.66
109 110 9.979578 AGAATCTATAGTGATGACATCAACTTC 57.020 33.333 19.57 13.15 41.69 3.01
110 111 8.809159 AATCTATAGTGATGACATCAACTTCG 57.191 34.615 19.57 8.87 41.69 3.79
111 112 7.334844 TCTATAGTGATGACATCAACTTCGT 57.665 36.000 19.57 10.72 41.69 3.85
112 113 7.418408 TCTATAGTGATGACATCAACTTCGTC 58.582 38.462 19.57 5.84 41.69 4.20
113 114 4.527509 AGTGATGACATCAACTTCGTCT 57.472 40.909 19.57 8.02 41.69 4.18
114 115 4.489810 AGTGATGACATCAACTTCGTCTC 58.510 43.478 19.57 4.45 41.69 3.36
115 116 4.021981 AGTGATGACATCAACTTCGTCTCA 60.022 41.667 19.57 0.00 41.69 3.27
116 117 4.090642 GTGATGACATCAACTTCGTCTCAC 59.909 45.833 19.57 0.87 41.69 3.51
117 118 3.726291 TGACATCAACTTCGTCTCACA 57.274 42.857 0.00 0.00 0.00 3.58
118 119 4.257267 TGACATCAACTTCGTCTCACAT 57.743 40.909 0.00 0.00 0.00 3.21
119 120 3.989817 TGACATCAACTTCGTCTCACATG 59.010 43.478 0.00 0.00 0.00 3.21
120 121 2.738846 ACATCAACTTCGTCTCACATGC 59.261 45.455 0.00 0.00 0.00 4.06
121 122 2.524569 TCAACTTCGTCTCACATGCA 57.475 45.000 0.00 0.00 0.00 3.96
122 123 3.044235 TCAACTTCGTCTCACATGCAT 57.956 42.857 0.00 0.00 0.00 3.96
123 124 2.738314 TCAACTTCGTCTCACATGCATG 59.262 45.455 25.09 25.09 0.00 4.06
124 125 1.081892 ACTTCGTCTCACATGCATGC 58.918 50.000 26.53 11.82 0.00 4.06
125 126 1.081094 CTTCGTCTCACATGCATGCA 58.919 50.000 26.53 25.04 0.00 3.96
126 127 1.669265 CTTCGTCTCACATGCATGCAT 59.331 47.619 27.46 27.46 37.08 3.96
139 140 6.448053 CATGCATGCATGTAATTAGCTTTC 57.552 37.500 40.30 7.03 46.20 2.62
140 141 5.840243 TGCATGCATGTAATTAGCTTTCT 57.160 34.783 26.79 0.00 0.00 2.52
141 142 5.584442 TGCATGCATGTAATTAGCTTTCTG 58.416 37.500 26.79 0.00 0.00 3.02
142 143 4.443394 GCATGCATGTAATTAGCTTTCTGC 59.557 41.667 26.79 5.29 43.29 4.26
143 144 4.637483 TGCATGTAATTAGCTTTCTGCC 57.363 40.909 0.00 0.00 44.23 4.85
144 145 4.015764 TGCATGTAATTAGCTTTCTGCCA 58.984 39.130 0.00 0.00 44.23 4.92
145 146 4.646040 TGCATGTAATTAGCTTTCTGCCAT 59.354 37.500 0.00 0.00 44.23 4.40
146 147 4.980434 GCATGTAATTAGCTTTCTGCCATG 59.020 41.667 0.00 0.00 44.23 3.66
147 148 4.637483 TGTAATTAGCTTTCTGCCATGC 57.363 40.909 0.00 0.00 44.23 4.06
148 149 4.015764 TGTAATTAGCTTTCTGCCATGCA 58.984 39.130 0.00 0.00 44.23 3.96
149 150 3.515330 AATTAGCTTTCTGCCATGCAC 57.485 42.857 0.00 0.00 44.23 4.57
150 151 0.804364 TTAGCTTTCTGCCATGCACG 59.196 50.000 0.00 0.00 44.23 5.34
151 152 0.321564 TAGCTTTCTGCCATGCACGT 60.322 50.000 0.00 0.00 44.23 4.49
152 153 0.321564 AGCTTTCTGCCATGCACGTA 60.322 50.000 0.00 0.00 44.23 3.57
153 154 0.179189 GCTTTCTGCCATGCACGTAC 60.179 55.000 0.00 0.00 33.79 3.67
154 155 1.155889 CTTTCTGCCATGCACGTACA 58.844 50.000 0.00 0.00 33.79 2.90
155 156 1.739466 CTTTCTGCCATGCACGTACAT 59.261 47.619 0.00 0.00 33.79 2.29
156 157 1.819928 TTCTGCCATGCACGTACATT 58.180 45.000 0.00 0.00 33.79 2.71
157 158 2.682155 TCTGCCATGCACGTACATTA 57.318 45.000 0.00 0.00 33.79 1.90
158 159 3.192541 TCTGCCATGCACGTACATTAT 57.807 42.857 0.00 0.00 33.79 1.28
159 160 2.871633 TCTGCCATGCACGTACATTATG 59.128 45.455 0.00 0.00 33.79 1.90
160 161 2.871633 CTGCCATGCACGTACATTATGA 59.128 45.455 0.00 0.00 33.79 2.15
161 162 3.274288 TGCCATGCACGTACATTATGAA 58.726 40.909 0.00 0.00 31.71 2.57
162 163 3.312146 TGCCATGCACGTACATTATGAAG 59.688 43.478 0.00 0.00 31.71 3.02
163 164 3.559655 GCCATGCACGTACATTATGAAGA 59.440 43.478 0.00 0.00 0.00 2.87
164 165 4.035091 GCCATGCACGTACATTATGAAGAA 59.965 41.667 0.00 0.00 0.00 2.52
165 166 5.277974 GCCATGCACGTACATTATGAAGAAT 60.278 40.000 0.00 0.00 0.00 2.40
166 167 6.073276 GCCATGCACGTACATTATGAAGAATA 60.073 38.462 0.00 0.00 0.00 1.75
167 168 7.519809 GCCATGCACGTACATTATGAAGAATAA 60.520 37.037 0.00 0.00 35.21 1.40
168 169 8.341903 CCATGCACGTACATTATGAAGAATAAA 58.658 33.333 0.00 0.00 34.41 1.40
169 170 9.715123 CATGCACGTACATTATGAAGAATAAAA 57.285 29.630 0.00 0.00 34.41 1.52
171 172 9.767684 TGCACGTACATTATGAAGAATAAAAAG 57.232 29.630 0.00 0.00 34.41 2.27
172 173 8.734030 GCACGTACATTATGAAGAATAAAAAGC 58.266 33.333 0.00 0.00 34.41 3.51
173 174 9.767684 CACGTACATTATGAAGAATAAAAAGCA 57.232 29.630 0.00 0.00 34.41 3.91
174 175 9.769093 ACGTACATTATGAAGAATAAAAAGCAC 57.231 29.630 0.00 0.00 34.41 4.40
175 176 9.988350 CGTACATTATGAAGAATAAAAAGCACT 57.012 29.630 0.00 0.00 34.41 4.40
191 192 7.997107 AAAAGCACTAATTATCACATGCATG 57.003 32.000 25.09 25.09 35.51 4.06
192 193 6.704289 AAGCACTAATTATCACATGCATGT 57.296 33.333 26.61 26.61 42.84 3.21
203 204 1.536766 ACATGCATGTGGAGAACAACG 59.463 47.619 30.92 0.61 43.61 4.10
204 205 1.135603 CATGCATGTGGAGAACAACGG 60.136 52.381 18.91 0.00 43.61 4.44
205 206 0.107643 TGCATGTGGAGAACAACGGA 59.892 50.000 0.00 0.00 43.61 4.69
206 207 0.517316 GCATGTGGAGAACAACGGAC 59.483 55.000 0.00 0.00 43.61 4.79
207 208 1.878102 GCATGTGGAGAACAACGGACT 60.878 52.381 0.00 0.00 43.61 3.85
208 209 1.800586 CATGTGGAGAACAACGGACTG 59.199 52.381 0.00 0.00 43.61 3.51
209 210 0.531974 TGTGGAGAACAACGGACTGC 60.532 55.000 0.00 0.00 35.24 4.40
210 211 0.531974 GTGGAGAACAACGGACTGCA 60.532 55.000 0.00 0.00 0.00 4.41
211 212 0.396435 TGGAGAACAACGGACTGCAT 59.604 50.000 0.00 0.00 0.00 3.96
212 213 0.798776 GGAGAACAACGGACTGCATG 59.201 55.000 0.00 0.00 0.00 4.06
213 214 1.512926 GAGAACAACGGACTGCATGT 58.487 50.000 0.00 0.00 0.00 3.21
214 215 2.611971 GGAGAACAACGGACTGCATGTA 60.612 50.000 0.00 0.00 0.00 2.29
215 216 3.064207 GAGAACAACGGACTGCATGTAA 58.936 45.455 0.00 0.00 0.00 2.41
216 217 3.674997 AGAACAACGGACTGCATGTAAT 58.325 40.909 0.00 0.00 0.00 1.89
217 218 3.684788 AGAACAACGGACTGCATGTAATC 59.315 43.478 0.00 0.00 0.00 1.75
218 219 2.356135 ACAACGGACTGCATGTAATCC 58.644 47.619 0.62 0.62 0.00 3.01
222 223 2.604046 GGACTGCATGTAATCCGAGT 57.396 50.000 0.00 0.00 0.00 4.18
223 224 2.906354 GGACTGCATGTAATCCGAGTT 58.094 47.619 0.00 0.00 0.00 3.01
224 225 4.054780 GGACTGCATGTAATCCGAGTTA 57.945 45.455 0.00 0.00 0.00 2.24
225 226 4.051922 GGACTGCATGTAATCCGAGTTAG 58.948 47.826 0.00 0.00 0.00 2.34
226 227 4.202121 GGACTGCATGTAATCCGAGTTAGA 60.202 45.833 0.00 0.00 0.00 2.10
227 228 5.339008 ACTGCATGTAATCCGAGTTAGAA 57.661 39.130 0.00 0.00 0.00 2.10
228 229 5.109903 ACTGCATGTAATCCGAGTTAGAAC 58.890 41.667 0.00 0.00 0.00 3.01
229 230 5.079689 TGCATGTAATCCGAGTTAGAACA 57.920 39.130 0.00 0.00 0.00 3.18
230 231 5.109210 TGCATGTAATCCGAGTTAGAACAG 58.891 41.667 0.00 0.00 0.00 3.16
231 232 4.508124 GCATGTAATCCGAGTTAGAACAGG 59.492 45.833 0.00 0.00 0.00 4.00
232 233 4.119442 TGTAATCCGAGTTAGAACAGGC 57.881 45.455 0.00 0.00 0.00 4.85
233 234 3.767673 TGTAATCCGAGTTAGAACAGGCT 59.232 43.478 0.00 0.00 0.00 4.58
234 235 2.969628 ATCCGAGTTAGAACAGGCTG 57.030 50.000 14.16 14.16 0.00 4.85
235 236 0.246635 TCCGAGTTAGAACAGGCTGC 59.753 55.000 15.89 0.00 0.00 5.25
236 237 0.037326 CCGAGTTAGAACAGGCTGCA 60.037 55.000 15.89 0.00 0.00 4.41
237 238 1.406069 CCGAGTTAGAACAGGCTGCAT 60.406 52.381 15.89 3.30 0.00 3.96
238 239 1.662629 CGAGTTAGAACAGGCTGCATG 59.337 52.381 15.89 13.33 0.00 4.06
239 240 1.399791 GAGTTAGAACAGGCTGCATGC 59.600 52.381 15.89 11.82 41.94 4.06
240 241 0.097674 GTTAGAACAGGCTGCATGCG 59.902 55.000 15.89 9.16 44.05 4.73
241 242 1.026182 TTAGAACAGGCTGCATGCGG 61.026 55.000 22.66 22.66 44.05 5.69
242 243 1.898330 TAGAACAGGCTGCATGCGGA 61.898 55.000 30.67 3.78 44.05 5.54
243 244 2.044650 AACAGGCTGCATGCGGAT 60.045 55.556 30.67 14.63 44.05 4.18
244 245 1.660560 GAACAGGCTGCATGCGGATT 61.661 55.000 30.67 16.74 44.05 3.01
245 246 1.940883 AACAGGCTGCATGCGGATTG 61.941 55.000 30.67 25.52 44.05 2.67
246 247 2.044650 AGGCTGCATGCGGATTGT 60.045 55.556 30.67 7.59 44.05 2.71
247 248 2.117156 AGGCTGCATGCGGATTGTC 61.117 57.895 30.67 11.52 44.05 3.18
248 249 2.410469 GCTGCATGCGGATTGTCC 59.590 61.111 30.67 7.27 0.00 4.02
258 259 3.875838 GGATTGTCCGGATCTCTCG 57.124 57.895 7.81 0.00 0.00 4.04
259 260 0.319125 GGATTGTCCGGATCTCTCGC 60.319 60.000 7.81 0.00 0.00 5.03
260 261 0.671251 GATTGTCCGGATCTCTCGCT 59.329 55.000 7.81 0.00 0.00 4.93
261 262 1.880675 GATTGTCCGGATCTCTCGCTA 59.119 52.381 7.81 0.00 0.00 4.26
262 263 1.982660 TTGTCCGGATCTCTCGCTAT 58.017 50.000 7.81 0.00 0.00 2.97
263 264 1.239347 TGTCCGGATCTCTCGCTATG 58.761 55.000 7.81 0.00 0.00 2.23
264 265 0.523966 GTCCGGATCTCTCGCTATGG 59.476 60.000 7.81 0.00 0.00 2.74
265 266 0.110678 TCCGGATCTCTCGCTATGGT 59.889 55.000 0.00 0.00 0.00 3.55
266 267 0.523966 CCGGATCTCTCGCTATGGTC 59.476 60.000 0.00 0.00 0.00 4.02
267 268 0.523966 CGGATCTCTCGCTATGGTCC 59.476 60.000 0.00 0.00 0.00 4.46
268 269 0.523966 GGATCTCTCGCTATGGTCCG 59.476 60.000 0.00 0.00 0.00 4.79
269 270 0.109504 GATCTCTCGCTATGGTCCGC 60.110 60.000 0.00 0.00 0.00 5.54
270 271 0.823769 ATCTCTCGCTATGGTCCGCA 60.824 55.000 0.00 0.00 0.00 5.69
271 272 1.299468 CTCTCGCTATGGTCCGCAC 60.299 63.158 0.00 0.00 0.00 5.34
272 273 2.655364 CTCGCTATGGTCCGCACG 60.655 66.667 0.00 0.00 0.00 5.34
273 274 3.411418 CTCGCTATGGTCCGCACGT 62.411 63.158 0.00 0.00 0.00 4.49
274 275 2.954868 CGCTATGGTCCGCACGTC 60.955 66.667 0.00 0.00 0.00 4.34
275 276 2.494918 GCTATGGTCCGCACGTCT 59.505 61.111 0.00 0.00 0.00 4.18
276 277 1.878522 GCTATGGTCCGCACGTCTG 60.879 63.158 0.00 0.00 0.00 3.51
277 278 1.807226 CTATGGTCCGCACGTCTGA 59.193 57.895 0.00 0.00 0.00 3.27
278 279 0.525668 CTATGGTCCGCACGTCTGAC 60.526 60.000 0.00 0.00 0.00 3.51
291 292 1.654105 CGTCTGACGTTAGCAATGTCC 59.346 52.381 21.30 3.83 44.87 4.02
292 293 2.683968 GTCTGACGTTAGCAATGTCCA 58.316 47.619 1.76 6.23 44.87 4.02
293 294 3.064207 GTCTGACGTTAGCAATGTCCAA 58.936 45.455 1.76 4.68 44.87 3.53
294 295 3.064207 TCTGACGTTAGCAATGTCCAAC 58.936 45.455 1.76 0.00 44.87 3.77
295 296 2.805671 CTGACGTTAGCAATGTCCAACA 59.194 45.455 14.57 0.00 44.87 3.33
296 297 3.206964 TGACGTTAGCAATGTCCAACAA 58.793 40.909 14.57 0.00 44.87 2.83
297 298 3.628032 TGACGTTAGCAATGTCCAACAAA 59.372 39.130 14.57 0.00 44.87 2.83
298 299 3.959943 ACGTTAGCAATGTCCAACAAAC 58.040 40.909 0.00 0.00 0.00 2.93
299 300 3.378742 ACGTTAGCAATGTCCAACAAACA 59.621 39.130 0.00 0.00 0.00 2.83
300 301 4.142359 ACGTTAGCAATGTCCAACAAACAA 60.142 37.500 0.00 0.00 0.00 2.83
301 302 4.800993 CGTTAGCAATGTCCAACAAACAAA 59.199 37.500 0.00 0.00 0.00 2.83
302 303 5.461737 CGTTAGCAATGTCCAACAAACAAAT 59.538 36.000 0.00 0.00 0.00 2.32
303 304 6.638873 CGTTAGCAATGTCCAACAAACAAATA 59.361 34.615 0.00 0.00 0.00 1.40
304 305 7.148983 CGTTAGCAATGTCCAACAAACAAATAG 60.149 37.037 0.00 0.00 0.00 1.73
305 306 5.540911 AGCAATGTCCAACAAACAAATAGG 58.459 37.500 0.00 0.00 0.00 2.57
306 307 5.304101 AGCAATGTCCAACAAACAAATAGGA 59.696 36.000 0.00 0.00 0.00 2.94
307 308 6.014327 AGCAATGTCCAACAAACAAATAGGAT 60.014 34.615 0.00 0.00 0.00 3.24
308 309 6.650390 GCAATGTCCAACAAACAAATAGGATT 59.350 34.615 0.00 0.00 0.00 3.01
309 310 7.148590 GCAATGTCCAACAAACAAATAGGATTC 60.149 37.037 0.00 0.00 0.00 2.52
310 311 7.781324 ATGTCCAACAAACAAATAGGATTCT 57.219 32.000 0.00 0.00 0.00 2.40
311 312 7.214467 TGTCCAACAAACAAATAGGATTCTC 57.786 36.000 0.00 0.00 0.00 2.87
312 313 7.004086 TGTCCAACAAACAAATAGGATTCTCT 58.996 34.615 0.00 0.00 0.00 3.10
313 314 7.505585 TGTCCAACAAACAAATAGGATTCTCTT 59.494 33.333 0.00 0.00 0.00 2.85
314 315 8.360390 GTCCAACAAACAAATAGGATTCTCTTT 58.640 33.333 0.00 0.00 0.00 2.52
315 316 8.923270 TCCAACAAACAAATAGGATTCTCTTTT 58.077 29.630 0.00 0.00 0.00 2.27
316 317 8.981647 CCAACAAACAAATAGGATTCTCTTTTG 58.018 33.333 7.49 7.49 34.79 2.44
317 318 8.490355 CAACAAACAAATAGGATTCTCTTTTGC 58.510 33.333 8.57 0.00 33.29 3.68
318 319 7.955918 ACAAACAAATAGGATTCTCTTTTGCT 58.044 30.769 8.57 0.00 33.29 3.91
319 320 9.077885 ACAAACAAATAGGATTCTCTTTTGCTA 57.922 29.630 8.57 0.00 33.29 3.49
320 321 9.912634 CAAACAAATAGGATTCTCTTTTGCTAA 57.087 29.630 8.57 0.00 33.29 3.09
369 370 8.727100 AAAAACAAATAGGATTCTCTTTCCCT 57.273 30.769 0.00 0.00 33.45 4.20
370 371 8.727100 AAAACAAATAGGATTCTCTTTCCCTT 57.273 30.769 0.00 0.00 33.45 3.95
371 372 7.709149 AACAAATAGGATTCTCTTTCCCTTG 57.291 36.000 0.00 0.00 33.45 3.61
372 373 7.032598 ACAAATAGGATTCTCTTTCCCTTGA 57.967 36.000 0.00 0.00 33.45 3.02
373 374 7.470192 ACAAATAGGATTCTCTTTCCCTTGAA 58.530 34.615 0.00 0.00 33.45 2.69
374 375 7.950124 ACAAATAGGATTCTCTTTCCCTTGAAA 59.050 33.333 0.00 0.00 38.14 2.69
375 376 8.806146 CAAATAGGATTCTCTTTCCCTTGAAAA 58.194 33.333 0.00 0.00 39.88 2.29
376 377 8.956446 AATAGGATTCTCTTTCCCTTGAAAAA 57.044 30.769 0.00 0.00 39.88 1.94
377 378 6.907853 AGGATTCTCTTTCCCTTGAAAAAG 57.092 37.500 0.00 0.00 39.88 2.27
378 379 6.377080 AGGATTCTCTTTCCCTTGAAAAAGT 58.623 36.000 0.00 0.00 39.88 2.66
379 380 7.526918 AGGATTCTCTTTCCCTTGAAAAAGTA 58.473 34.615 0.00 0.00 39.88 2.24
380 381 8.004801 AGGATTCTCTTTCCCTTGAAAAAGTAA 58.995 33.333 0.00 0.00 39.88 2.24
381 382 8.638873 GGATTCTCTTTCCCTTGAAAAAGTAAA 58.361 33.333 0.00 0.00 39.88 2.01
382 383 9.684448 GATTCTCTTTCCCTTGAAAAAGTAAAG 57.316 33.333 0.00 0.00 39.88 1.85
383 384 7.039313 TCTCTTTCCCTTGAAAAAGTAAAGC 57.961 36.000 0.00 0.00 39.88 3.51
384 385 6.605594 TCTCTTTCCCTTGAAAAAGTAAAGCA 59.394 34.615 0.00 0.00 39.88 3.91
385 386 7.123547 TCTCTTTCCCTTGAAAAAGTAAAGCAA 59.876 33.333 0.00 0.00 39.88 3.91
386 387 7.616313 TCTTTCCCTTGAAAAAGTAAAGCAAA 58.384 30.769 0.00 0.00 39.88 3.68
387 388 8.264347 TCTTTCCCTTGAAAAAGTAAAGCAAAT 58.736 29.630 0.00 0.00 39.88 2.32
388 389 9.541143 CTTTCCCTTGAAAAAGTAAAGCAAATA 57.459 29.630 0.00 0.00 39.88 1.40
389 390 9.541143 TTTCCCTTGAAAAAGTAAAGCAAATAG 57.459 29.630 0.00 0.00 37.53 1.73
390 391 7.666623 TCCCTTGAAAAAGTAAAGCAAATAGG 58.333 34.615 0.00 0.00 0.00 2.57
391 392 7.507616 TCCCTTGAAAAAGTAAAGCAAATAGGA 59.492 33.333 0.00 0.00 0.00 2.94
401 402 5.723860 AAAGCAAATAGGATTCTCCCTCT 57.276 39.130 0.00 0.00 37.19 3.69
414 415 4.141990 TCTCCCTCTCCCTGTTCTAAAA 57.858 45.455 0.00 0.00 0.00 1.52
415 416 3.838903 TCTCCCTCTCCCTGTTCTAAAAC 59.161 47.826 0.00 0.00 35.85 2.43
427 428 7.070322 TCCCTGTTCTAAAACTGTACTGTAGTT 59.930 37.037 5.76 6.43 39.92 2.24
429 430 8.762426 CCTGTTCTAAAACTGTACTGTAGTTTC 58.238 37.037 5.76 0.00 44.98 2.78
430 431 9.309516 CTGTTCTAAAACTGTACTGTAGTTTCA 57.690 33.333 5.76 1.80 44.98 2.69
431 432 9.309516 TGTTCTAAAACTGTACTGTAGTTTCAG 57.690 33.333 5.76 3.81 44.98 3.02
432 433 7.941795 TCTAAAACTGTACTGTAGTTTCAGC 57.058 36.000 5.76 0.00 44.98 4.26
433 434 7.723324 TCTAAAACTGTACTGTAGTTTCAGCT 58.277 34.615 5.76 0.00 44.98 4.24
434 435 8.853126 TCTAAAACTGTACTGTAGTTTCAGCTA 58.147 33.333 5.76 0.00 44.98 3.32
613 621 1.002502 AGGAACAGCTTAACCGCCC 60.003 57.895 0.00 0.00 0.00 6.13
660 668 1.901591 AGTTGCATCACCAACCTCAG 58.098 50.000 0.00 0.00 44.71 3.35
713 721 8.291740 CACATATTCAAATCAGAACAGACACAA 58.708 33.333 0.00 0.00 0.00 3.33
797 805 2.303676 CCGCTCGCTCGCTTAATCC 61.304 63.158 0.00 0.00 0.00 3.01
801 809 1.543941 CTCGCTCGCTTAATCCGCAG 61.544 60.000 0.00 0.00 0.00 5.18
945 954 4.251543 TGACGATGCAGTCTGAGTTAAA 57.748 40.909 3.32 0.00 41.47 1.52
952 961 6.958193 CGATGCAGTCTGAGTTAAATTTTCTC 59.042 38.462 3.32 12.94 0.00 2.87
1186 1199 1.098050 TCTAGGTAAGAACGGGTCGC 58.902 55.000 0.00 0.00 0.00 5.19
1187 1200 0.248377 CTAGGTAAGAACGGGTCGCG 60.248 60.000 7.88 7.88 0.00 5.87
1188 1201 1.656818 TAGGTAAGAACGGGTCGCGG 61.657 60.000 14.28 0.00 0.00 6.46
1189 1202 3.184003 GTAAGAACGGGTCGCGGC 61.184 66.667 14.28 3.04 0.00 6.53
1191 1204 3.636313 TAAGAACGGGTCGCGGCAG 62.636 63.158 14.93 8.70 0.00 4.85
1211 1224 2.182030 CCGTCCGTCCTCTGCTTC 59.818 66.667 0.00 0.00 0.00 3.86
1212 1225 2.202492 CGTCCGTCCTCTGCTTCG 60.202 66.667 0.00 0.00 0.00 3.79
1213 1226 2.507324 GTCCGTCCTCTGCTTCGC 60.507 66.667 0.00 0.00 0.00 4.70
1214 1227 2.676822 TCCGTCCTCTGCTTCGCT 60.677 61.111 0.00 0.00 0.00 4.93
1216 1229 2.578178 CGTCCTCTGCTTCGCTCG 60.578 66.667 0.00 0.00 0.00 5.03
1217 1230 2.878429 GTCCTCTGCTTCGCTCGA 59.122 61.111 0.00 0.00 0.00 4.04
1218 1231 1.435515 GTCCTCTGCTTCGCTCGAT 59.564 57.895 0.00 0.00 0.00 3.59
1219 1232 0.593773 GTCCTCTGCTTCGCTCGATC 60.594 60.000 0.00 0.00 0.00 3.69
1220 1233 1.656875 CCTCTGCTTCGCTCGATCG 60.657 63.158 9.36 9.36 0.00 3.69
1221 1234 2.278206 TCTGCTTCGCTCGATCGC 60.278 61.111 11.09 0.00 0.00 4.58
1223 1236 2.575111 CTGCTTCGCTCGATCGCAG 61.575 63.158 20.91 20.91 40.17 5.18
1224 1237 3.982360 GCTTCGCTCGATCGCAGC 61.982 66.667 16.66 16.66 40.91 5.25
1225 1238 2.278466 CTTCGCTCGATCGCAGCT 60.278 61.111 25.94 0.00 34.45 4.24
1227 1240 0.592500 CTTCGCTCGATCGCAGCTTA 60.593 55.000 25.94 16.64 34.45 3.09
1228 1241 0.030773 TTCGCTCGATCGCAGCTTAT 59.969 50.000 25.94 0.00 34.45 1.73
1256 1269 0.390124 GACCACCACTTGTCCACGTA 59.610 55.000 0.00 0.00 0.00 3.57
1257 1270 1.001633 GACCACCACTTGTCCACGTAT 59.998 52.381 0.00 0.00 0.00 3.06
1258 1271 2.231964 GACCACCACTTGTCCACGTATA 59.768 50.000 0.00 0.00 0.00 1.47
1260 1273 2.256174 CACCACTTGTCCACGTATACG 58.744 52.381 23.24 23.24 46.33 3.06
1261 1274 1.274596 CCACTTGTCCACGTATACGC 58.725 55.000 24.64 9.26 44.43 4.42
1262 1275 1.274596 CACTTGTCCACGTATACGCC 58.725 55.000 24.64 10.90 44.43 5.68
1263 1276 1.135199 CACTTGTCCACGTATACGCCT 60.135 52.381 24.64 3.71 44.43 5.52
1264 1277 1.547372 ACTTGTCCACGTATACGCCTT 59.453 47.619 24.64 2.91 44.43 4.35
1265 1278 2.028748 ACTTGTCCACGTATACGCCTTT 60.029 45.455 24.64 2.51 44.43 3.11
1266 1279 3.193267 ACTTGTCCACGTATACGCCTTTA 59.807 43.478 24.64 6.61 44.43 1.85
1267 1280 3.865011 TGTCCACGTATACGCCTTTAA 57.135 42.857 24.64 4.26 44.43 1.52
1268 1281 4.389890 TGTCCACGTATACGCCTTTAAT 57.610 40.909 24.64 0.54 44.43 1.40
1272 1285 4.034279 TCCACGTATACGCCTTTAATTTGC 59.966 41.667 24.64 0.00 44.43 3.68
1680 1711 3.663176 GCTGCGGCTCTGTTTGCA 61.663 61.111 11.21 0.00 35.75 4.08
1681 1712 2.986306 GCTGCGGCTCTGTTTGCAT 61.986 57.895 11.21 0.00 36.64 3.96
1682 1713 1.154093 CTGCGGCTCTGTTTGCATG 60.154 57.895 0.00 0.00 36.64 4.06
1683 1714 1.579964 CTGCGGCTCTGTTTGCATGA 61.580 55.000 0.00 0.00 36.64 3.07
1684 1715 1.171549 TGCGGCTCTGTTTGCATGAA 61.172 50.000 0.00 0.00 31.31 2.57
1685 1716 0.039256 GCGGCTCTGTTTGCATGAAA 60.039 50.000 0.00 0.00 0.00 2.69
1686 1717 1.973138 CGGCTCTGTTTGCATGAAAG 58.027 50.000 0.00 0.00 0.00 2.62
1687 1718 1.267806 CGGCTCTGTTTGCATGAAAGT 59.732 47.619 0.00 0.00 0.00 2.66
1688 1719 2.287788 CGGCTCTGTTTGCATGAAAGTT 60.288 45.455 0.00 0.00 0.00 2.66
1689 1720 3.721035 GGCTCTGTTTGCATGAAAGTTT 58.279 40.909 0.00 0.00 0.00 2.66
1690 1721 4.122046 GGCTCTGTTTGCATGAAAGTTTT 58.878 39.130 0.00 0.00 0.00 2.43
1691 1722 4.571984 GGCTCTGTTTGCATGAAAGTTTTT 59.428 37.500 0.00 0.00 0.00 1.94
1692 1723 5.495502 GCTCTGTTTGCATGAAAGTTTTTG 58.504 37.500 0.00 0.00 0.00 2.44
1693 1724 5.063817 GCTCTGTTTGCATGAAAGTTTTTGT 59.936 36.000 0.00 0.00 0.00 2.83
1694 1725 6.402442 GCTCTGTTTGCATGAAAGTTTTTGTT 60.402 34.615 0.00 0.00 0.00 2.83
1695 1726 7.432350 TCTGTTTGCATGAAAGTTTTTGTTT 57.568 28.000 0.00 0.00 0.00 2.83
1696 1727 7.869800 TCTGTTTGCATGAAAGTTTTTGTTTT 58.130 26.923 0.00 0.00 0.00 2.43
1697 1728 8.348507 TCTGTTTGCATGAAAGTTTTTGTTTTT 58.651 25.926 0.00 0.00 0.00 1.94
1757 1817 6.787085 CTCGTTCTGAGTGATTTTTAACCT 57.213 37.500 0.00 0.00 40.03 3.50
1770 1830 7.547722 GTGATTTTTAACCTTTTCCACTGTGTT 59.452 33.333 7.08 0.00 0.00 3.32
1771 1831 7.547370 TGATTTTTAACCTTTTCCACTGTGTTG 59.453 33.333 7.08 0.00 0.00 3.33
1775 1835 3.958018 ACCTTTTCCACTGTGTTGTGTA 58.042 40.909 7.08 0.00 36.30 2.90
1777 1837 4.953579 ACCTTTTCCACTGTGTTGTGTATT 59.046 37.500 7.08 0.00 36.30 1.89
1778 1838 6.123651 ACCTTTTCCACTGTGTTGTGTATTA 58.876 36.000 7.08 0.00 36.30 0.98
1779 1839 6.775629 ACCTTTTCCACTGTGTTGTGTATTAT 59.224 34.615 7.08 0.00 36.30 1.28
1780 1840 7.083858 CCTTTTCCACTGTGTTGTGTATTATG 58.916 38.462 7.08 0.00 36.30 1.90
1781 1841 7.255451 CCTTTTCCACTGTGTTGTGTATTATGT 60.255 37.037 7.08 0.00 36.30 2.29
1782 1842 6.552859 TTCCACTGTGTTGTGTATTATGTG 57.447 37.500 7.08 0.00 36.30 3.21
1783 1843 4.454161 TCCACTGTGTTGTGTATTATGTGC 59.546 41.667 7.08 0.00 36.30 4.57
1893 1954 3.046285 ACAAAATTGTCGTGTCGTGTG 57.954 42.857 0.00 0.00 36.50 3.82
1894 1955 2.417239 ACAAAATTGTCGTGTCGTGTGT 59.583 40.909 0.00 0.00 36.50 3.72
1957 2018 1.937899 ACCACGTACTGTTGTTCTTGC 59.062 47.619 0.00 0.00 0.00 4.01
1959 2020 2.032894 CCACGTACTGTTGTTCTTGCTG 60.033 50.000 0.00 0.00 0.00 4.41
1966 2027 0.881796 GTTGTTCTTGCTGGGTAGGC 59.118 55.000 0.00 0.00 0.00 3.93
2053 2127 6.015940 GGAAGGATAATTTTCACTATGCTGGG 60.016 42.308 0.00 0.00 0.00 4.45
2068 2142 2.290896 TGCTGGGAACAAGGTGAATAGG 60.291 50.000 0.00 0.00 42.06 2.57
2072 2146 3.655777 TGGGAACAAGGTGAATAGGAACT 59.344 43.478 0.00 0.00 39.74 3.01
2109 2185 3.496507 GGCAAATGTTAAAATGTGGCGTT 59.503 39.130 6.60 0.00 31.40 4.84
2112 2188 5.164002 GCAAATGTTAAAATGTGGCGTTAGG 60.164 40.000 0.00 0.00 0.00 2.69
2196 2279 4.515191 ACAGTTGCGTAAGATTTGACATGT 59.485 37.500 0.00 0.00 43.02 3.21
2245 2328 9.366216 AGTGTAAAATTTGTCAGGAAAAACTTC 57.634 29.630 0.00 0.00 0.00 3.01
2253 2336 7.595819 TTGTCAGGAAAAACTTCCATATTGT 57.404 32.000 6.67 0.00 43.54 2.71
2263 2346 4.700700 ACTTCCATATTGTAGCGGGTAAC 58.299 43.478 0.00 0.00 0.00 2.50
2275 2358 1.153353 CGGGTAACTGTCATGCGTTT 58.847 50.000 0.00 0.00 38.54 3.60
2279 2362 3.190535 GGGTAACTGTCATGCGTTTGATT 59.809 43.478 0.00 0.00 0.00 2.57
2328 2424 6.127730 GGGTGTCAGATTTTTAATCCGACATT 60.128 38.462 16.91 0.00 37.65 2.71
2384 2480 3.005050 AGACATCGTTCTACGTGGACAAA 59.995 43.478 0.00 0.00 43.14 2.83
2439 2552 5.700402 ACATCTGCCCTAAAGACATAGTT 57.300 39.130 0.00 0.00 0.00 2.24
2443 2556 4.286032 TCTGCCCTAAAGACATAGTTGTGT 59.714 41.667 0.00 0.00 35.79 3.72
2457 2578 4.245251 AGTTGTGTCTAAAGGTTGGGTT 57.755 40.909 0.00 0.00 0.00 4.11
2498 2647 7.893124 AAAGACTCCAATAACTCCGTATAGA 57.107 36.000 0.00 0.00 0.00 1.98
2570 2720 3.938334 TGCAAATATACATCACACGCTGT 59.062 39.130 0.00 0.00 0.00 4.40
2571 2721 4.394610 TGCAAATATACATCACACGCTGTT 59.605 37.500 0.00 0.00 0.00 3.16
2573 2723 5.220662 GCAAATATACATCACACGCTGTTCT 60.221 40.000 0.00 0.00 0.00 3.01
2642 2801 2.437359 GTCTCTGCGCTGGCCAAT 60.437 61.111 7.01 0.00 38.85 3.16
2643 2802 2.042831 GTCTCTGCGCTGGCCAATT 61.043 57.895 7.01 0.00 38.85 2.32
2644 2803 0.744414 GTCTCTGCGCTGGCCAATTA 60.744 55.000 7.01 0.00 38.85 1.40
2645 2804 0.744414 TCTCTGCGCTGGCCAATTAC 60.744 55.000 7.01 0.00 38.85 1.89
2646 2805 2.040213 CTCTGCGCTGGCCAATTACG 62.040 60.000 7.01 9.89 38.85 3.18
2647 2806 3.112126 CTGCGCTGGCCAATTACGG 62.112 63.158 7.01 0.00 38.85 4.02
2648 2807 3.131478 GCGCTGGCCAATTACGGT 61.131 61.111 7.01 0.00 0.00 4.83
2649 2808 3.098555 CGCTGGCCAATTACGGTC 58.901 61.111 7.01 0.00 0.00 4.79
2650 2809 1.743623 CGCTGGCCAATTACGGTCA 60.744 57.895 7.01 0.00 38.69 4.02
2651 2810 1.800681 GCTGGCCAATTACGGTCAC 59.199 57.895 7.01 0.00 35.14 3.67
2652 2811 1.654023 GCTGGCCAATTACGGTCACC 61.654 60.000 7.01 0.00 35.14 4.02
2653 2812 0.322098 CTGGCCAATTACGGTCACCA 60.322 55.000 7.01 0.00 35.14 4.17
2654 2813 0.606944 TGGCCAATTACGGTCACCAC 60.607 55.000 0.61 0.00 35.14 4.16
2655 2814 1.310216 GGCCAATTACGGTCACCACC 61.310 60.000 0.00 0.00 39.69 4.61
2656 2815 0.322187 GCCAATTACGGTCACCACCT 60.322 55.000 0.00 0.00 41.17 4.00
2657 2816 1.448985 CCAATTACGGTCACCACCTG 58.551 55.000 0.00 0.00 41.17 4.00
2658 2817 1.271163 CCAATTACGGTCACCACCTGT 60.271 52.381 0.00 0.00 41.17 4.00
2659 2818 2.073816 CAATTACGGTCACCACCTGTC 58.926 52.381 0.00 0.00 41.17 3.51
2660 2819 1.344065 ATTACGGTCACCACCTGTCA 58.656 50.000 0.00 0.00 41.17 3.58
2661 2820 1.344065 TTACGGTCACCACCTGTCAT 58.656 50.000 0.00 0.00 41.17 3.06
2662 2821 0.892755 TACGGTCACCACCTGTCATC 59.107 55.000 0.00 0.00 41.17 2.92
2663 2822 1.446099 CGGTCACCACCTGTCATCG 60.446 63.158 0.00 0.00 41.17 3.84
2664 2823 1.873270 CGGTCACCACCTGTCATCGA 61.873 60.000 0.00 0.00 41.17 3.59
2665 2824 0.108615 GGTCACCACCTGTCATCGAG 60.109 60.000 0.00 0.00 40.00 4.04
2666 2825 0.737715 GTCACCACCTGTCATCGAGC 60.738 60.000 0.00 0.00 0.00 5.03
2667 2826 1.807165 CACCACCTGTCATCGAGCG 60.807 63.158 0.00 0.00 0.00 5.03
2668 2827 2.202797 CCACCTGTCATCGAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
2669 2828 2.887568 CACCTGTCATCGAGCGGC 60.888 66.667 0.00 0.00 0.00 6.53
2670 2829 4.148825 ACCTGTCATCGAGCGGCC 62.149 66.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.079182 TGTTTTCACATAAAAGAACTGTCGT 57.921 32.000 0.00 0.00 0.00 4.34
1 2 7.962934 TTGTTTTCACATAAAAGAACTGTCG 57.037 32.000 0.00 0.00 31.06 4.35
18 19 4.029087 CGCTCCGATCGAAAAATTGTTTTC 59.971 41.667 18.66 2.51 46.17 2.29
19 20 3.911964 CGCTCCGATCGAAAAATTGTTTT 59.088 39.130 18.66 0.00 39.70 2.43
20 21 3.187637 TCGCTCCGATCGAAAAATTGTTT 59.812 39.130 18.66 0.00 32.53 2.83
21 22 2.739913 TCGCTCCGATCGAAAAATTGTT 59.260 40.909 18.66 0.00 32.53 2.83
22 23 2.093783 GTCGCTCCGATCGAAAAATTGT 59.906 45.455 18.66 0.00 38.42 2.71
23 24 2.694043 GTCGCTCCGATCGAAAAATTG 58.306 47.619 18.66 0.00 38.42 2.32
24 25 1.323534 CGTCGCTCCGATCGAAAAATT 59.676 47.619 18.66 0.00 38.42 1.82
25 26 0.921347 CGTCGCTCCGATCGAAAAAT 59.079 50.000 18.66 0.00 38.42 1.82
26 27 1.074319 CCGTCGCTCCGATCGAAAAA 61.074 55.000 18.66 0.00 38.42 1.94
27 28 1.515519 CCGTCGCTCCGATCGAAAA 60.516 57.895 18.66 0.28 38.42 2.29
28 29 2.101575 CCGTCGCTCCGATCGAAA 59.898 61.111 18.66 3.09 38.42 3.46
29 30 2.693762 AACCGTCGCTCCGATCGAA 61.694 57.895 18.66 0.00 38.42 3.71
30 31 3.129502 AACCGTCGCTCCGATCGA 61.130 61.111 18.66 1.60 38.42 3.59
31 32 2.949678 CAACCGTCGCTCCGATCG 60.950 66.667 8.51 8.51 38.42 3.69
32 33 2.582498 CCAACCGTCGCTCCGATC 60.582 66.667 0.00 0.00 38.42 3.69
33 34 4.814294 GCCAACCGTCGCTCCGAT 62.814 66.667 0.00 0.00 38.42 4.18
36 37 3.766691 TAGGCCAACCGTCGCTCC 61.767 66.667 5.01 0.00 42.76 4.70
37 38 2.508663 GTAGGCCAACCGTCGCTC 60.509 66.667 5.01 0.00 42.76 5.03
38 39 4.430765 CGTAGGCCAACCGTCGCT 62.431 66.667 5.01 0.00 42.76 4.93
39 40 3.919973 TTCGTAGGCCAACCGTCGC 62.920 63.158 5.01 0.00 42.76 5.19
40 41 1.373246 TTTCGTAGGCCAACCGTCG 60.373 57.895 5.01 0.00 42.76 5.12
41 42 0.600782 TGTTTCGTAGGCCAACCGTC 60.601 55.000 5.01 0.69 42.76 4.79
42 43 0.035739 ATGTTTCGTAGGCCAACCGT 59.964 50.000 5.01 0.00 42.76 4.83
43 44 1.161843 AATGTTTCGTAGGCCAACCG 58.838 50.000 5.01 3.57 42.76 4.44
44 45 3.004944 TCAAAATGTTTCGTAGGCCAACC 59.995 43.478 5.01 0.00 0.00 3.77
45 46 4.231718 TCAAAATGTTTCGTAGGCCAAC 57.768 40.909 5.01 0.00 0.00 3.77
46 47 4.920640 TTCAAAATGTTTCGTAGGCCAA 57.079 36.364 5.01 0.00 0.00 4.52
47 48 5.461032 AATTCAAAATGTTTCGTAGGCCA 57.539 34.783 5.01 0.00 0.00 5.36
48 49 6.779115 AAAATTCAAAATGTTTCGTAGGCC 57.221 33.333 0.00 0.00 0.00 5.19
49 50 7.846485 TGAAAAATTCAAAATGTTTCGTAGGC 58.154 30.769 9.59 0.00 36.59 3.93
72 73 9.978044 CATCACTATAGATTCTCTCATGTTTGA 57.022 33.333 6.78 0.00 0.00 2.69
73 74 9.978044 TCATCACTATAGATTCTCTCATGTTTG 57.022 33.333 6.78 0.00 0.00 2.93
74 75 9.979578 GTCATCACTATAGATTCTCTCATGTTT 57.020 33.333 6.78 0.00 0.00 2.83
75 76 9.140874 TGTCATCACTATAGATTCTCTCATGTT 57.859 33.333 6.78 0.00 0.00 2.71
76 77 8.703378 TGTCATCACTATAGATTCTCTCATGT 57.297 34.615 6.78 0.00 0.00 3.21
77 78 9.791820 GATGTCATCACTATAGATTCTCTCATG 57.208 37.037 6.78 0.00 0.00 3.07
78 79 9.531158 TGATGTCATCACTATAGATTCTCTCAT 57.469 33.333 11.62 3.24 33.59 2.90
79 80 8.930846 TGATGTCATCACTATAGATTCTCTCA 57.069 34.615 11.62 0.00 33.59 3.27
80 81 9.624697 GTTGATGTCATCACTATAGATTCTCTC 57.375 37.037 15.23 0.00 39.39 3.20
81 82 9.365906 AGTTGATGTCATCACTATAGATTCTCT 57.634 33.333 15.23 0.00 39.39 3.10
82 83 9.979578 AAGTTGATGTCATCACTATAGATTCTC 57.020 33.333 15.23 0.00 39.39 2.87
83 84 9.979578 GAAGTTGATGTCATCACTATAGATTCT 57.020 33.333 15.23 0.00 39.39 2.40
84 85 8.910666 CGAAGTTGATGTCATCACTATAGATTC 58.089 37.037 15.23 10.10 39.39 2.52
85 86 8.417106 ACGAAGTTGATGTCATCACTATAGATT 58.583 33.333 15.23 3.18 37.78 2.40
86 87 7.946207 ACGAAGTTGATGTCATCACTATAGAT 58.054 34.615 15.23 1.67 37.78 1.98
87 88 7.334844 ACGAAGTTGATGTCATCACTATAGA 57.665 36.000 15.23 0.00 37.78 1.98
103 104 6.437865 ATGCATGCATGTGAGACGAAGTTG 62.438 45.833 31.74 0.00 36.45 3.16
104 105 4.424792 ATGCATGCATGTGAGACGAAGTT 61.425 43.478 31.74 3.38 36.45 2.66
105 106 2.938314 ATGCATGCATGTGAGACGAAGT 60.938 45.455 31.74 3.87 38.49 3.01
106 107 1.081094 TGCATGCATGTGAGACGAAG 58.919 50.000 26.79 0.00 0.00 3.79
107 108 1.399089 CATGCATGCATGTGAGACGAA 59.601 47.619 40.30 10.25 46.20 3.85
108 109 1.011333 CATGCATGCATGTGAGACGA 58.989 50.000 40.30 10.77 46.20 4.20
109 110 3.526825 CATGCATGCATGTGAGACG 57.473 52.632 40.30 21.55 46.20 4.18
117 118 6.213677 CAGAAAGCTAATTACATGCATGCAT 58.786 36.000 27.46 27.46 37.08 3.96
118 119 5.584442 CAGAAAGCTAATTACATGCATGCA 58.416 37.500 26.53 25.04 0.00 3.96
119 120 4.443394 GCAGAAAGCTAATTACATGCATGC 59.557 41.667 26.53 11.82 41.15 4.06
120 121 4.980434 GGCAGAAAGCTAATTACATGCATG 59.020 41.667 25.09 25.09 44.79 4.06
121 122 4.646040 TGGCAGAAAGCTAATTACATGCAT 59.354 37.500 0.00 0.00 44.79 3.96
122 123 4.015764 TGGCAGAAAGCTAATTACATGCA 58.984 39.130 0.00 0.00 44.79 3.96
123 124 4.637483 TGGCAGAAAGCTAATTACATGC 57.363 40.909 0.00 0.00 44.79 4.06
124 125 4.980434 GCATGGCAGAAAGCTAATTACATG 59.020 41.667 10.88 10.88 44.79 3.21
125 126 4.646040 TGCATGGCAGAAAGCTAATTACAT 59.354 37.500 0.00 0.00 44.79 2.29
126 127 4.015764 TGCATGGCAGAAAGCTAATTACA 58.984 39.130 0.00 0.00 44.79 2.41
127 128 4.354587 GTGCATGGCAGAAAGCTAATTAC 58.645 43.478 0.00 0.00 44.79 1.89
128 129 3.065233 CGTGCATGGCAGAAAGCTAATTA 59.935 43.478 0.00 0.00 44.79 1.40
129 130 2.159338 CGTGCATGGCAGAAAGCTAATT 60.159 45.455 0.00 0.00 44.79 1.40
130 131 1.402968 CGTGCATGGCAGAAAGCTAAT 59.597 47.619 0.00 0.00 44.79 1.73
131 132 0.804364 CGTGCATGGCAGAAAGCTAA 59.196 50.000 0.00 0.00 44.79 3.09
132 133 0.321564 ACGTGCATGGCAGAAAGCTA 60.322 50.000 11.36 0.00 44.79 3.32
133 134 0.321564 TACGTGCATGGCAGAAAGCT 60.322 50.000 11.36 0.00 44.79 3.74
134 135 0.179189 GTACGTGCATGGCAGAAAGC 60.179 55.000 11.36 0.00 40.08 3.51
135 136 1.155889 TGTACGTGCATGGCAGAAAG 58.844 50.000 11.36 0.00 40.08 2.62
136 137 1.819928 ATGTACGTGCATGGCAGAAA 58.180 45.000 18.78 0.00 40.08 2.52
137 138 1.819928 AATGTACGTGCATGGCAGAA 58.180 45.000 20.14 0.00 40.08 3.02
138 139 2.682155 TAATGTACGTGCATGGCAGA 57.318 45.000 20.14 1.07 40.08 4.26
139 140 2.871633 TCATAATGTACGTGCATGGCAG 59.128 45.455 20.14 10.43 40.08 4.85
140 141 2.911484 TCATAATGTACGTGCATGGCA 58.089 42.857 20.14 8.87 35.60 4.92
141 142 3.559655 TCTTCATAATGTACGTGCATGGC 59.440 43.478 20.14 3.34 0.00 4.40
142 143 5.733226 TTCTTCATAATGTACGTGCATGG 57.267 39.130 20.14 12.46 0.00 3.66
143 144 9.715123 TTTTATTCTTCATAATGTACGTGCATG 57.285 29.630 20.14 9.56 0.00 4.06
145 146 9.767684 CTTTTTATTCTTCATAATGTACGTGCA 57.232 29.630 9.28 9.28 0.00 4.57
146 147 8.734030 GCTTTTTATTCTTCATAATGTACGTGC 58.266 33.333 0.00 0.00 0.00 5.34
147 148 9.767684 TGCTTTTTATTCTTCATAATGTACGTG 57.232 29.630 0.00 0.00 0.00 4.49
148 149 9.769093 GTGCTTTTTATTCTTCATAATGTACGT 57.231 29.630 0.00 0.00 0.00 3.57
149 150 9.988350 AGTGCTTTTTATTCTTCATAATGTACG 57.012 29.630 0.00 0.00 0.00 3.67
165 166 9.518906 CATGCATGTGATAATTAGTGCTTTTTA 57.481 29.630 18.91 0.00 33.95 1.52
166 167 8.036575 ACATGCATGTGATAATTAGTGCTTTTT 58.963 29.630 30.92 0.00 40.03 1.94
167 168 7.549839 ACATGCATGTGATAATTAGTGCTTTT 58.450 30.769 30.92 0.00 40.03 2.27
168 169 7.104043 ACATGCATGTGATAATTAGTGCTTT 57.896 32.000 30.92 0.00 40.03 3.51
169 170 6.704289 ACATGCATGTGATAATTAGTGCTT 57.296 33.333 30.92 0.20 40.03 3.91
183 184 1.536766 CGTTGTTCTCCACATGCATGT 59.463 47.619 26.61 26.61 42.84 3.21
184 185 1.135603 CCGTTGTTCTCCACATGCATG 60.136 52.381 25.09 25.09 34.43 4.06
185 186 1.167851 CCGTTGTTCTCCACATGCAT 58.832 50.000 0.00 0.00 34.43 3.96
186 187 0.107643 TCCGTTGTTCTCCACATGCA 59.892 50.000 0.00 0.00 34.43 3.96
187 188 0.517316 GTCCGTTGTTCTCCACATGC 59.483 55.000 0.00 0.00 34.43 4.06
188 189 1.800586 CAGTCCGTTGTTCTCCACATG 59.199 52.381 0.00 0.00 34.43 3.21
189 190 1.878102 GCAGTCCGTTGTTCTCCACAT 60.878 52.381 0.00 0.00 34.43 3.21
190 191 0.531974 GCAGTCCGTTGTTCTCCACA 60.532 55.000 0.00 0.00 0.00 4.17
191 192 0.531974 TGCAGTCCGTTGTTCTCCAC 60.532 55.000 0.00 0.00 0.00 4.02
192 193 0.396435 ATGCAGTCCGTTGTTCTCCA 59.604 50.000 0.00 0.00 0.00 3.86
193 194 0.798776 CATGCAGTCCGTTGTTCTCC 59.201 55.000 0.00 0.00 0.00 3.71
194 195 1.512926 ACATGCAGTCCGTTGTTCTC 58.487 50.000 0.00 0.00 0.00 2.87
195 196 2.831685 TACATGCAGTCCGTTGTTCT 57.168 45.000 0.00 0.00 0.00 3.01
196 197 3.181510 GGATTACATGCAGTCCGTTGTTC 60.182 47.826 0.00 0.00 0.00 3.18
197 198 2.747446 GGATTACATGCAGTCCGTTGTT 59.253 45.455 0.00 0.00 0.00 2.83
198 199 2.356135 GGATTACATGCAGTCCGTTGT 58.644 47.619 0.00 0.00 0.00 3.32
199 200 1.327460 CGGATTACATGCAGTCCGTTG 59.673 52.381 19.01 0.97 46.29 4.10
200 201 1.651987 CGGATTACATGCAGTCCGTT 58.348 50.000 19.01 0.00 46.29 4.44
201 202 3.362581 CGGATTACATGCAGTCCGT 57.637 52.632 19.01 3.42 46.29 4.69
203 204 2.604046 ACTCGGATTACATGCAGTCC 57.396 50.000 0.00 0.00 0.00 3.85
204 205 4.933330 TCTAACTCGGATTACATGCAGTC 58.067 43.478 0.00 0.00 0.00 3.51
205 206 5.109903 GTTCTAACTCGGATTACATGCAGT 58.890 41.667 0.00 0.00 0.00 4.40
206 207 5.109210 TGTTCTAACTCGGATTACATGCAG 58.891 41.667 0.00 0.00 0.00 4.41
207 208 5.079689 TGTTCTAACTCGGATTACATGCA 57.920 39.130 0.00 0.00 0.00 3.96
208 209 4.508124 CCTGTTCTAACTCGGATTACATGC 59.492 45.833 0.00 0.00 0.00 4.06
209 210 4.508124 GCCTGTTCTAACTCGGATTACATG 59.492 45.833 0.00 0.00 0.00 3.21
210 211 4.406003 AGCCTGTTCTAACTCGGATTACAT 59.594 41.667 6.11 0.00 0.00 2.29
211 212 3.767673 AGCCTGTTCTAACTCGGATTACA 59.232 43.478 6.11 0.00 0.00 2.41
212 213 4.113354 CAGCCTGTTCTAACTCGGATTAC 58.887 47.826 6.11 0.00 0.00 1.89
213 214 3.430374 GCAGCCTGTTCTAACTCGGATTA 60.430 47.826 0.00 0.00 0.00 1.75
214 215 2.678190 GCAGCCTGTTCTAACTCGGATT 60.678 50.000 0.00 0.00 0.00 3.01
215 216 1.134670 GCAGCCTGTTCTAACTCGGAT 60.135 52.381 0.00 0.00 0.00 4.18
216 217 0.246635 GCAGCCTGTTCTAACTCGGA 59.753 55.000 0.00 0.00 0.00 4.55
217 218 0.037326 TGCAGCCTGTTCTAACTCGG 60.037 55.000 0.00 0.00 0.00 4.63
218 219 1.662629 CATGCAGCCTGTTCTAACTCG 59.337 52.381 0.00 0.00 0.00 4.18
219 220 1.399791 GCATGCAGCCTGTTCTAACTC 59.600 52.381 14.21 0.00 37.23 3.01
220 221 1.457346 GCATGCAGCCTGTTCTAACT 58.543 50.000 14.21 0.00 37.23 2.24
221 222 0.097674 CGCATGCAGCCTGTTCTAAC 59.902 55.000 19.57 0.00 41.38 2.34
222 223 1.026182 CCGCATGCAGCCTGTTCTAA 61.026 55.000 19.57 0.00 41.38 2.10
223 224 1.450134 CCGCATGCAGCCTGTTCTA 60.450 57.895 19.57 0.00 41.38 2.10
224 225 2.547640 ATCCGCATGCAGCCTGTTCT 62.548 55.000 19.57 0.00 41.38 3.01
225 226 1.660560 AATCCGCATGCAGCCTGTTC 61.661 55.000 19.57 0.00 41.38 3.18
226 227 1.679977 AATCCGCATGCAGCCTGTT 60.680 52.632 19.57 0.29 41.38 3.16
227 228 2.044650 AATCCGCATGCAGCCTGT 60.045 55.556 19.57 0.00 41.38 4.00
228 229 2.332362 GACAATCCGCATGCAGCCTG 62.332 60.000 19.57 11.51 41.38 4.85
229 230 2.044650 ACAATCCGCATGCAGCCT 60.045 55.556 19.57 0.00 41.38 4.58
230 231 2.410469 GACAATCCGCATGCAGCC 59.590 61.111 19.57 0.00 41.38 4.85
231 232 2.410469 GGACAATCCGCATGCAGC 59.590 61.111 19.57 0.00 40.87 5.25
240 241 0.319125 GCGAGAGATCCGGACAATCC 60.319 60.000 6.12 0.00 0.00 3.01
241 242 0.671251 AGCGAGAGATCCGGACAATC 59.329 55.000 6.12 5.13 0.00 2.67
242 243 1.982660 TAGCGAGAGATCCGGACAAT 58.017 50.000 6.12 0.00 0.00 2.71
243 244 1.609072 CATAGCGAGAGATCCGGACAA 59.391 52.381 6.12 0.00 0.00 3.18
244 245 1.239347 CATAGCGAGAGATCCGGACA 58.761 55.000 6.12 0.00 0.00 4.02
245 246 0.523966 CCATAGCGAGAGATCCGGAC 59.476 60.000 6.12 0.11 0.00 4.79
246 247 0.110678 ACCATAGCGAGAGATCCGGA 59.889 55.000 6.61 6.61 0.00 5.14
247 248 0.523966 GACCATAGCGAGAGATCCGG 59.476 60.000 0.00 0.00 0.00 5.14
248 249 0.523966 GGACCATAGCGAGAGATCCG 59.476 60.000 0.00 0.00 0.00 4.18
249 250 0.523966 CGGACCATAGCGAGAGATCC 59.476 60.000 0.00 0.00 0.00 3.36
250 251 0.109504 GCGGACCATAGCGAGAGATC 60.110 60.000 0.00 0.00 0.00 2.75
251 252 0.823769 TGCGGACCATAGCGAGAGAT 60.824 55.000 0.00 0.00 35.87 2.75
252 253 1.453197 TGCGGACCATAGCGAGAGA 60.453 57.895 0.00 0.00 35.87 3.10
253 254 1.299468 GTGCGGACCATAGCGAGAG 60.299 63.158 0.00 0.00 35.87 3.20
254 255 2.805546 GTGCGGACCATAGCGAGA 59.194 61.111 0.00 0.00 35.87 4.04
255 256 2.655364 CGTGCGGACCATAGCGAG 60.655 66.667 0.00 0.00 35.87 5.03
256 257 3.405592 GACGTGCGGACCATAGCGA 62.406 63.158 0.00 0.00 35.87 4.93
257 258 2.954868 GACGTGCGGACCATAGCG 60.955 66.667 0.00 0.00 35.87 4.26
258 259 1.878522 CAGACGTGCGGACCATAGC 60.879 63.158 0.00 0.00 0.00 2.97
259 260 0.525668 GTCAGACGTGCGGACCATAG 60.526 60.000 0.00 0.00 35.94 2.23
260 261 1.509463 GTCAGACGTGCGGACCATA 59.491 57.895 0.00 0.00 35.94 2.74
261 262 2.261671 GTCAGACGTGCGGACCAT 59.738 61.111 0.00 0.00 35.94 3.55
262 263 4.337060 CGTCAGACGTGCGGACCA 62.337 66.667 15.21 0.00 38.31 4.02
272 273 2.683968 TGGACATTGCTAACGTCAGAC 58.316 47.619 0.00 0.00 0.00 3.51
273 274 3.064207 GTTGGACATTGCTAACGTCAGA 58.936 45.455 0.00 0.00 0.00 3.27
274 275 2.805671 TGTTGGACATTGCTAACGTCAG 59.194 45.455 0.00 0.00 32.61 3.51
275 276 2.839975 TGTTGGACATTGCTAACGTCA 58.160 42.857 0.00 0.00 32.61 4.35
276 277 3.889196 TTGTTGGACATTGCTAACGTC 57.111 42.857 0.00 0.00 32.61 4.34
277 278 3.378742 TGTTTGTTGGACATTGCTAACGT 59.621 39.130 0.00 0.00 32.61 3.99
278 279 3.958704 TGTTTGTTGGACATTGCTAACG 58.041 40.909 0.00 0.00 32.61 3.18
279 280 6.843069 ATTTGTTTGTTGGACATTGCTAAC 57.157 33.333 0.00 0.00 0.00 2.34
280 281 7.014711 TCCTATTTGTTTGTTGGACATTGCTAA 59.985 33.333 0.00 0.00 0.00 3.09
281 282 6.491745 TCCTATTTGTTTGTTGGACATTGCTA 59.508 34.615 0.00 0.00 0.00 3.49
282 283 5.304101 TCCTATTTGTTTGTTGGACATTGCT 59.696 36.000 0.00 0.00 0.00 3.91
283 284 5.537188 TCCTATTTGTTTGTTGGACATTGC 58.463 37.500 0.00 0.00 0.00 3.56
284 285 8.090214 AGAATCCTATTTGTTTGTTGGACATTG 58.910 33.333 0.00 0.00 0.00 2.82
285 286 8.193953 AGAATCCTATTTGTTTGTTGGACATT 57.806 30.769 0.00 0.00 0.00 2.71
286 287 7.671398 AGAGAATCCTATTTGTTTGTTGGACAT 59.329 33.333 0.00 0.00 33.66 3.06
287 288 7.004086 AGAGAATCCTATTTGTTTGTTGGACA 58.996 34.615 0.00 0.00 33.66 4.02
288 289 7.454260 AGAGAATCCTATTTGTTTGTTGGAC 57.546 36.000 0.00 0.00 33.66 4.02
289 290 8.477419 AAAGAGAATCCTATTTGTTTGTTGGA 57.523 30.769 0.00 0.00 33.05 3.53
290 291 8.981647 CAAAAGAGAATCCTATTTGTTTGTTGG 58.018 33.333 0.00 0.00 34.40 3.77
291 292 8.490355 GCAAAAGAGAATCCTATTTGTTTGTTG 58.510 33.333 0.00 0.00 34.40 3.33
292 293 8.424133 AGCAAAAGAGAATCCTATTTGTTTGTT 58.576 29.630 0.00 0.00 34.40 2.83
293 294 7.955918 AGCAAAAGAGAATCCTATTTGTTTGT 58.044 30.769 0.00 0.00 34.40 2.83
294 295 9.912634 TTAGCAAAAGAGAATCCTATTTGTTTG 57.087 29.630 0.00 0.00 34.40 2.93
344 345 8.727100 AGGGAAAGAGAATCCTATTTGTTTTT 57.273 30.769 0.00 0.00 34.31 1.94
345 346 8.588472 CAAGGGAAAGAGAATCCTATTTGTTTT 58.412 33.333 0.00 0.00 34.31 2.43
346 347 7.950124 TCAAGGGAAAGAGAATCCTATTTGTTT 59.050 33.333 0.00 0.00 34.31 2.83
347 348 7.470192 TCAAGGGAAAGAGAATCCTATTTGTT 58.530 34.615 0.00 0.00 34.31 2.83
348 349 7.032598 TCAAGGGAAAGAGAATCCTATTTGT 57.967 36.000 0.00 0.00 34.31 2.83
349 350 7.944729 TTCAAGGGAAAGAGAATCCTATTTG 57.055 36.000 0.00 0.00 34.31 2.32
350 351 8.956446 TTTTCAAGGGAAAGAGAATCCTATTT 57.044 30.769 0.00 0.00 43.47 1.40
351 352 8.956446 TTTTTCAAGGGAAAGAGAATCCTATT 57.044 30.769 0.00 0.00 43.47 1.73
352 353 8.173412 ACTTTTTCAAGGGAAAGAGAATCCTAT 58.827 33.333 12.79 0.00 44.06 2.57
353 354 7.526918 ACTTTTTCAAGGGAAAGAGAATCCTA 58.473 34.615 12.79 0.00 44.06 2.94
354 355 6.377080 ACTTTTTCAAGGGAAAGAGAATCCT 58.623 36.000 12.79 0.00 44.06 3.24
355 356 6.656632 ACTTTTTCAAGGGAAAGAGAATCC 57.343 37.500 12.79 0.00 44.06 3.01
356 357 9.684448 CTTTACTTTTTCAAGGGAAAGAGAATC 57.316 33.333 12.79 0.00 44.06 2.52
357 358 8.144478 GCTTTACTTTTTCAAGGGAAAGAGAAT 58.856 33.333 12.79 0.00 44.06 2.40
358 359 7.123547 TGCTTTACTTTTTCAAGGGAAAGAGAA 59.876 33.333 12.79 3.15 44.06 2.87
359 360 6.605594 TGCTTTACTTTTTCAAGGGAAAGAGA 59.394 34.615 12.79 0.00 44.06 3.10
360 361 6.805713 TGCTTTACTTTTTCAAGGGAAAGAG 58.194 36.000 7.35 3.01 45.75 2.85
361 362 6.783708 TGCTTTACTTTTTCAAGGGAAAGA 57.216 33.333 7.35 0.00 43.47 2.52
362 363 7.841915 TTTGCTTTACTTTTTCAAGGGAAAG 57.158 32.000 0.07 0.07 43.47 2.62
363 364 9.541143 CTATTTGCTTTACTTTTTCAAGGGAAA 57.459 29.630 0.00 0.00 41.13 3.13
364 365 8.147704 CCTATTTGCTTTACTTTTTCAAGGGAA 58.852 33.333 0.00 0.00 33.82 3.97
365 366 7.507616 TCCTATTTGCTTTACTTTTTCAAGGGA 59.492 33.333 0.00 0.00 33.82 4.20
366 367 7.666623 TCCTATTTGCTTTACTTTTTCAAGGG 58.333 34.615 0.00 0.00 33.82 3.95
367 368 9.710900 AATCCTATTTGCTTTACTTTTTCAAGG 57.289 29.630 0.00 0.00 33.82 3.61
389 390 9.687195 GTTTTAGAACAGGGAGAGGGAGAATCC 62.687 48.148 0.00 0.00 44.66 3.01
390 391 2.758130 AGAACAGGGAGAGGGAGAATC 58.242 52.381 0.00 0.00 0.00 2.52
391 392 2.959421 AGAACAGGGAGAGGGAGAAT 57.041 50.000 0.00 0.00 0.00 2.40
401 402 5.881923 ACAGTACAGTTTTAGAACAGGGA 57.118 39.130 0.00 0.00 38.26 4.20
466 467 0.323629 TAGGTTGAAACTGCTCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
469 470 4.803098 TCTAGTAGGTTGAAACTGCTCC 57.197 45.455 3.56 0.00 32.98 4.70
470 471 7.387948 TGATTTTCTAGTAGGTTGAAACTGCTC 59.612 37.037 3.56 0.00 32.98 4.26
471 472 7.224297 TGATTTTCTAGTAGGTTGAAACTGCT 58.776 34.615 6.04 6.04 35.12 4.24
472 473 7.435068 TGATTTTCTAGTAGGTTGAAACTGC 57.565 36.000 0.00 0.00 30.66 4.40
560 568 2.825836 CCGGGCCATCTTCAGCAC 60.826 66.667 4.39 0.00 0.00 4.40
613 621 6.460781 TCTTGTGTTGTTGGTACTAGGTATG 58.539 40.000 0.00 0.00 0.00 2.39
660 668 1.257750 GGAGGAATGGGGGTGTTTGC 61.258 60.000 0.00 0.00 0.00 3.68
713 721 1.592223 CGGTCTTCTCCCGCTTTCT 59.408 57.895 0.00 0.00 38.85 2.52
779 787 2.303676 GGATTAAGCGAGCGAGCGG 61.304 63.158 0.00 0.00 43.00 5.52
907 915 7.095229 TGCATCGTCAAAAGCTTGGATATATAC 60.095 37.037 0.00 0.00 33.01 1.47
945 954 5.502153 GCAGATTGCAGAGATGAGAAAAT 57.498 39.130 0.00 0.00 44.26 1.82
1194 1207 2.182030 GAAGCAGAGGACGGACGG 59.818 66.667 0.00 0.00 0.00 4.79
1195 1208 2.202492 CGAAGCAGAGGACGGACG 60.202 66.667 0.00 0.00 0.00 4.79
1208 1221 0.592500 TAAGCTGCGATCGAGCGAAG 60.593 55.000 29.29 27.79 41.61 3.79
1211 1224 1.771656 CATAAGCTGCGATCGAGCG 59.228 57.895 20.40 20.40 41.61 5.03
1212 1225 1.490692 GCATAAGCTGCGATCGAGC 59.509 57.895 21.57 22.73 41.97 5.03
1223 1236 3.127030 GTGGTGGTCAGTTAAGCATAAGC 59.873 47.826 0.00 0.00 42.56 3.09
1224 1237 4.579869 AGTGGTGGTCAGTTAAGCATAAG 58.420 43.478 0.00 0.00 0.00 1.73
1225 1238 4.634012 AGTGGTGGTCAGTTAAGCATAA 57.366 40.909 0.00 0.00 0.00 1.90
1227 1240 3.149196 CAAGTGGTGGTCAGTTAAGCAT 58.851 45.455 0.00 0.00 36.93 3.79
1228 1241 2.092646 ACAAGTGGTGGTCAGTTAAGCA 60.093 45.455 0.00 0.00 36.93 3.91
1230 1243 3.139077 GGACAAGTGGTGGTCAGTTAAG 58.861 50.000 0.00 0.00 36.93 1.85
1233 1246 0.916086 TGGACAAGTGGTGGTCAGTT 59.084 50.000 0.00 0.00 39.46 3.16
1234 1247 0.180406 GTGGACAAGTGGTGGTCAGT 59.820 55.000 0.00 0.00 35.74 3.41
1237 1250 0.390124 TACGTGGACAAGTGGTGGTC 59.610 55.000 0.00 0.00 0.00 4.02
1239 1252 2.613691 GTATACGTGGACAAGTGGTGG 58.386 52.381 0.00 0.00 0.00 4.61
1240 1253 2.256174 CGTATACGTGGACAAGTGGTG 58.744 52.381 17.16 0.00 34.11 4.17
1260 1273 4.214437 CAGATCGATCGCAAATTAAAGGC 58.786 43.478 19.33 0.00 0.00 4.35
1261 1274 4.214437 GCAGATCGATCGCAAATTAAAGG 58.786 43.478 26.34 7.94 0.00 3.11
1262 1275 4.836455 TGCAGATCGATCGCAAATTAAAG 58.164 39.130 29.47 11.07 34.94 1.85
1263 1276 4.332543 ACTGCAGATCGATCGCAAATTAAA 59.667 37.500 30.31 15.73 36.48 1.52
1264 1277 3.871006 ACTGCAGATCGATCGCAAATTAA 59.129 39.130 30.31 16.22 36.48 1.40
1265 1278 3.245990 CACTGCAGATCGATCGCAAATTA 59.754 43.478 30.31 16.72 36.48 1.40
1266 1279 2.031314 CACTGCAGATCGATCGCAAATT 59.969 45.455 30.31 20.71 36.48 1.82
1267 1280 1.596260 CACTGCAGATCGATCGCAAAT 59.404 47.619 30.31 23.06 36.48 2.32
1268 1281 1.001624 CACTGCAGATCGATCGCAAA 58.998 50.000 30.31 17.71 36.48 3.68
1272 1285 1.585668 GTGAACACTGCAGATCGATCG 59.414 52.381 23.35 9.36 0.00 3.69
1694 1725 2.505628 TTCATGCAGCGCTTCAAAAA 57.494 40.000 15.03 8.54 0.00 1.94
1695 1726 2.223782 ACTTTCATGCAGCGCTTCAAAA 60.224 40.909 15.03 10.10 0.00 2.44
1696 1727 1.337703 ACTTTCATGCAGCGCTTCAAA 59.662 42.857 15.03 1.45 0.00 2.69
1697 1728 0.953727 ACTTTCATGCAGCGCTTCAA 59.046 45.000 15.03 0.00 0.00 2.69
1698 1729 0.953727 AACTTTCATGCAGCGCTTCA 59.046 45.000 13.20 13.20 0.00 3.02
1699 1730 2.056094 AAACTTTCATGCAGCGCTTC 57.944 45.000 7.50 2.39 0.00 3.86
1700 1731 2.514205 AAAACTTTCATGCAGCGCTT 57.486 40.000 7.50 0.00 0.00 4.68
1701 1732 2.129607 CAAAAACTTTCATGCAGCGCT 58.870 42.857 2.64 2.64 0.00 5.92
1702 1733 1.860326 ACAAAAACTTTCATGCAGCGC 59.140 42.857 0.00 0.00 0.00 5.92
1703 1734 3.114809 TGACAAAAACTTTCATGCAGCG 58.885 40.909 0.00 0.00 0.00 5.18
1704 1735 5.063817 AGTTTGACAAAAACTTTCATGCAGC 59.936 36.000 1.27 0.00 37.18 5.25
1705 1736 6.651755 AGTTTGACAAAAACTTTCATGCAG 57.348 33.333 1.27 0.00 37.18 4.41
1706 1737 8.715191 ATAAGTTTGACAAAAACTTTCATGCA 57.285 26.923 18.27 0.00 45.20 3.96
1707 1738 9.424659 CAATAAGTTTGACAAAAACTTTCATGC 57.575 29.630 18.27 0.00 45.20 4.06
1708 1739 9.424659 GCAATAAGTTTGACAAAAACTTTCATG 57.575 29.630 18.27 15.27 45.20 3.07
1757 1817 7.421599 CACATAATACACAACACAGTGGAAAA 58.578 34.615 5.31 0.00 43.72 2.29
1770 1830 3.413327 ACCCGTTTGCACATAATACACA 58.587 40.909 0.00 0.00 0.00 3.72
1771 1831 3.484557 CGACCCGTTTGCACATAATACAC 60.485 47.826 0.00 0.00 0.00 2.90
1775 1835 2.102070 TCGACCCGTTTGCACATAAT 57.898 45.000 0.00 0.00 0.00 1.28
1777 1837 1.647346 GATCGACCCGTTTGCACATA 58.353 50.000 0.00 0.00 0.00 2.29
1778 1838 1.358725 CGATCGACCCGTTTGCACAT 61.359 55.000 10.26 0.00 0.00 3.21
1779 1839 2.024868 CGATCGACCCGTTTGCACA 61.025 57.895 10.26 0.00 0.00 4.57
1780 1840 2.736682 CCGATCGACCCGTTTGCAC 61.737 63.158 18.66 0.00 0.00 4.57
1781 1841 2.433491 CCGATCGACCCGTTTGCA 60.433 61.111 18.66 0.00 0.00 4.08
1782 1842 3.192922 CCCGATCGACCCGTTTGC 61.193 66.667 18.66 0.00 0.00 3.68
1783 1843 1.947597 TACCCCGATCGACCCGTTTG 61.948 60.000 18.66 0.00 0.00 2.93
1827 1887 1.414866 GGTTTTGGCCACCCACCAAT 61.415 55.000 18.56 0.00 46.25 3.16
1875 1936 2.673862 TGACACACGACACGACAATTTT 59.326 40.909 0.00 0.00 0.00 1.82
1957 2018 1.269998 GCTATACACGAGCCTACCCAG 59.730 57.143 0.00 0.00 33.60 4.45
1959 2020 1.000496 GTGCTATACACGAGCCTACCC 60.000 57.143 0.00 0.00 40.07 3.69
2053 2127 7.331791 ACAGATAGTTCCTATTCACCTTGTTC 58.668 38.462 0.00 0.00 0.00 3.18
2102 2178 1.532437 ACGCTAAAAACCTAACGCCAC 59.468 47.619 0.00 0.00 0.00 5.01
2109 2185 5.814764 TGTTGACAAACGCTAAAAACCTA 57.185 34.783 0.00 0.00 39.30 3.08
2161 2237 2.993899 ACGCAACTGTCCGAGAAATTAG 59.006 45.455 7.64 0.00 0.00 1.73
2162 2238 3.034721 ACGCAACTGTCCGAGAAATTA 57.965 42.857 7.64 0.00 0.00 1.40
2171 2247 3.496884 TGTCAAATCTTACGCAACTGTCC 59.503 43.478 0.00 0.00 0.00 4.02
2175 2258 5.470098 AGAACATGTCAAATCTTACGCAACT 59.530 36.000 0.00 0.00 0.00 3.16
2212 2295 6.932400 TCCTGACAAATTTTACACTACACGAT 59.068 34.615 0.00 0.00 0.00 3.73
2215 2298 9.575783 TTTTTCCTGACAAATTTTACACTACAC 57.424 29.630 0.00 0.00 0.00 2.90
2245 2328 4.056050 GACAGTTACCCGCTACAATATGG 58.944 47.826 0.00 0.00 0.00 2.74
2253 2336 0.179121 CGCATGACAGTTACCCGCTA 60.179 55.000 0.00 0.00 0.00 4.26
2263 2346 1.811965 TCCCAATCAAACGCATGACAG 59.188 47.619 0.00 0.00 30.82 3.51
2275 2358 4.753516 ACATAACGTCTGATCCCAATCA 57.246 40.909 5.20 0.00 39.63 2.57
2279 2362 3.254903 CGGATACATAACGTCTGATCCCA 59.745 47.826 15.67 0.00 31.00 4.37
2375 2471 5.106555 ACATTTGAGCTTCTATTTGTCCACG 60.107 40.000 0.00 0.00 0.00 4.94
2384 2480 7.451566 ACCAAAAACCTACATTTGAGCTTCTAT 59.548 33.333 0.00 0.00 38.50 1.98
2420 2533 4.286032 ACACAACTATGTCTTTAGGGCAGA 59.714 41.667 0.00 0.00 37.82 4.26
2439 2552 2.092103 AGCAACCCAACCTTTAGACACA 60.092 45.455 0.00 0.00 0.00 3.72
2443 2556 2.593026 CCAAGCAACCCAACCTTTAGA 58.407 47.619 0.00 0.00 0.00 2.10
2445 2558 1.710816 CCCAAGCAACCCAACCTTTA 58.289 50.000 0.00 0.00 0.00 1.85
2446 2559 1.053835 CCCCAAGCAACCCAACCTTT 61.054 55.000 0.00 0.00 0.00 3.11
2472 2593 8.755977 TCTATACGGAGTTATTGGAGTCTTTTT 58.244 33.333 0.00 0.00 37.78 1.94
2473 2594 8.302515 TCTATACGGAGTTATTGGAGTCTTTT 57.697 34.615 0.00 0.00 37.78 2.27
2485 2606 9.743581 TTGACACCATATATCTATACGGAGTTA 57.256 33.333 0.00 0.00 37.78 2.24
2526 2675 6.760770 TGCAGCACTTTTAGCAATTTTTAAGT 59.239 30.769 0.00 0.00 33.48 2.24
2570 2720 7.228906 TCCACCACATCGTTTTTGTTTATAGAA 59.771 33.333 0.00 0.00 0.00 2.10
2571 2721 6.711194 TCCACCACATCGTTTTTGTTTATAGA 59.289 34.615 0.00 0.00 0.00 1.98
2573 2723 6.879276 TCCACCACATCGTTTTTGTTTATA 57.121 33.333 0.00 0.00 0.00 0.98
2616 2775 2.174349 CGCAGAGACGGCAAAAGC 59.826 61.111 0.00 0.00 0.00 3.51
2628 2787 2.106074 CGTAATTGGCCAGCGCAGA 61.106 57.895 11.47 0.00 36.38 4.26
2637 2796 2.177044 GGTGGTGACCGTAATTGGC 58.823 57.895 0.00 0.00 30.61 4.52
2646 2805 0.108615 CTCGATGACAGGTGGTGACC 60.109 60.000 0.00 0.00 43.52 4.02
2647 2806 0.737715 GCTCGATGACAGGTGGTGAC 60.738 60.000 0.00 0.00 0.00 3.67
2648 2807 1.591703 GCTCGATGACAGGTGGTGA 59.408 57.895 0.00 0.00 0.00 4.02
2649 2808 1.807165 CGCTCGATGACAGGTGGTG 60.807 63.158 0.00 0.00 0.00 4.17
2650 2809 2.573869 CGCTCGATGACAGGTGGT 59.426 61.111 0.00 0.00 0.00 4.16
2651 2810 2.202797 CCGCTCGATGACAGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
2652 2811 2.887568 GCCGCTCGATGACAGGTG 60.888 66.667 0.00 0.00 0.00 4.00
2653 2812 4.148825 GGCCGCTCGATGACAGGT 62.149 66.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.