>input_sequence_71826
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------------------------------------------------ATGGCCCAAGCTCGCGTCGCCCTCGCGCTGTG
CGCCCTGCTGCTCCTCCACGGCGTCGCCTGGGAGGCGCGGGCGGCGTCGTACACCGTCGGGAACAGCGCCGGCTGGGACA
TCAGCGCCGACCTCCAGTCGTGGGCCGCCGCCAAGATATTCAACGTCGGCGACGTTCTAGGT----AAGAACGGGTCGCG
GCAGCGCCGTCCGTCCTCTGCTTCGCTCGATCGCAGCTTATGCTTAACTGACCACCACTTGTCCACGTATACGCCTTTAA
TTTGCGATCGATCTGCAGTGTTCACGTACTCCAAGACCCACACCCTGGACGAGGTGGACGCGGCGGGGTTCAAGAGCTGC
AGCGCCGCCAACGCGCTGCTCTCCAGCAGCGACGGCAACACGACGGTGCCCCTGACGGCGGGCGGCGACCGGTACTTCAT
CTGCGGCCACCAGATGCACTGCCTCGGCGGCATGAAGCTGCACGTGCACGTCACCTCGCCAGCCGGCTCCACCACGCCGG
GAGCCCCT------------------GCCGGCGCCCCGCGGGCGAGCCCCGGCGCCGCTCTCGGCCCGGCCGGCGGCACC
GACGACGACGCCGGCATCCCCAGGCTCGACCTCGGCGGGTCGCACCGGCTGGGGGTCGTGTGGCCCGCGCTGGCGACGTT
GTGGTTGTGCCTAGCTGCGGCTCTGTTTGC-----------------------------ATGA-----------------
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>chr2D_1_TraesCS2D01G390700
ACGACAGTTCTTTTATGTGAAAACAATTTTTCGATCGGAGCGACGGTTGGCCTACGAAACATTTTGAATTTTTCAAACAT
GAGAGAATCTATAGTGATGACATCAACTTCGTCTCACATGCATGCATGTAATTAGCTTTCTGCCATGCACGTACATTATG
AAGAATAAAAAGCACTAATTATCACATGCATGTGGAGAACAACGGACTGCATGTAATCCGAGTTAGAACAGGCTGCATGC
GGATTGTCCGGATCTCTCGCTATGGTCCGCACGTCTGACGTTAGCAATGTCCAACAAACAAATAGGATTCTCTTTTGCTA
AAAAAAAGATTCTCTAAACCCTAAAAAAACAAATAGGATTCTCTTTCCCTTGAAAAAGTAAAGCAAATAGGATTCTCCCT
CTCCCTGTTCTAAAACTGTACTGTAGTTTCAGCTAAAAAAACTGTACTCTAGTTTTTTTTTTTTTGCGGGGAGC------
AGTTTCAACCTACTAGAAAATCATAATCCTCTCCAAGAAGT-GGGGGAACAAGTTGCTACAATAAAGAAGAGTAGAAAAC
CACAAAAGTGCTGAAGATGGCCCGGCACGACCCTGGAGCAGCAGGAACAGCTTAACCGCCCATACCTAGTACCAACAACA
CAAGAGAAAGTTGCATCACCAACCTCAGCAAACACCCCCATTCCTCCCCGCGATCACATATTCAAATCAGAACAGACACA
AGAAAGCGGGAGAAGACCGTTGCACCTCCCCATTTTACAACCTTTTCAGTCGCTAGCTCGCGTGTGCCGCTCGCTCGCTT
AATCCGCAGCACCGTCCCCTGGTCGCCTTACAAGATTAGGTCAATTATTTCCAGCGACGCGCTCGAAAGATTAGGTTACC
CAATCCTCAACCAGAACCGGCGCTCAGGGAACTCGTATATATCCAA-GCTTTTGACGATGCAGTCTGAGTTAAATTTTCT
CATCTCTGCAATCTGCACTAGCATATCGGGATACCGCAGCGTCCGGCCATGGCCCAAGCTCGCGTCGCCCTCGCGCTGTG
CGCCCTGCTGCTCCTCCACGGCGTCGCCTGGGAGGCGCGGGCGGCGTCGTACACCGTCGGGAACAGCGCCGGCTGGGACA
TCAGCGCCGACCTCCAGTCGTGGGCCGCCGCCAAGATATTCAACGTCGGCGACGTTCTAGGT----AAGAACGGGTCGCG
GCAGCGCCGTCCGTCCTCTGCTTCGCTCGATCGCAGCTTATGCTTAACTGACCACCACTTGTCCACGTATACGCCTTTAA
TTTGCGATCGATCTGCAGTGTTCACGTACTCCAAGACCCACACCCTGGACGAGGTGGACGCGGCGGGGTTCAAGAGCTGC
AGCGCCGCCAACGCGCTGCTCTCCAGCAGCGACGGCAACACGACGGTGCCCCTGACGGCGGGCGGCGACCGGTACTTCAT
CTGCGGCCACCAGATGCACTGCCTCGGCGGCATGAAGCTGCACGTGCACGTCACCTCGCCAGCCGGCTCCACCACGCCGG
GAGCCCCT------------------GCCGGCGCCCCGCGGGCGAGCCCCGGCGCCGCTCTCGGCCCGGCCGGCGGCACC
GACGACGACGCCGGCATCCCCAGGCTCGACCTCGGCGGGTCGCACCGGCTGGGGGTCGTGTGGCCCGCGCTGGCGACGTT
GTGGTTGTGCCTAGCTGCGGCTCTGTTTGCATGAAAGTTTTTGTTTTTTGAAGCGCTGCATGAAA---------------
--------------GTTTTTGTCAAACTTATTGCTCGTTCTGAGTGATTTTTAACCTTTTCCACTGTGTTGTGTATTATG
TGCAAACGGGTCGATCGGGGTATCAAACGGAGGCCGAAAAATGGCTATTGGTGGGTGGCCAAAACCTCGCTACTCATCAC
AGCGAAGGCT-GTACAAAATTGTCGTGTCGTGTGTCAGCGTGACGCGCCCACATGGACACGCGTCTTGGGCGTACGTACC
ACGTACTGTTGTTCTTGCTGGGTAGGCTCGTGTAT-------------AGCACGGACAAGGGCAGCAGGTGGCGTATCAC
TTTCGAAGTCGCGGCGCTGTAGGAAGGATAATTTTCACTATGCTGGGAACAAGGTGAATAGGAACTATCTGTTTTTAATT
GGCAAATGTT--AAAATGTGGCGTTAGGTTTTTAGCGTTTGTCAACAAACATCCAGAGTTGCCATGCGAAAAAAGACTAA
TTTCTCGGAC-------AGTTGCGTAAGATTTGACATGTTCTAAAGTGAAAATTATCGTGTAGTGTAAAATTTGTCAGGA
AAAACTTCCATATTGTAGCGGGTAACTGTCATGCGTTTGATTGGGATCAGACGTTATGTATCCGAGGGTG----TCAGAT
TTTTAATC---------CGACATTGAATATATATTCGAGTTCTTTTAATTAGACAAAAGACATCGTTCTACGTGGACAAA
TAGAAGCTCAAATGTAGGTTTTTGGTA-----------------CTCCAACATCTGCCCTAAAGACATAGTTGTGTCTAA
--------AGGTTGGGTTGCTTGGGGCAAACAAAAAAGACTCCAATAACTCCG---------------------------
-TATAGATATATGGTGTCAAAAAAATGACACCATACTTAAAA-ATTGCTAAAAGTGCTGCAAATATACATCACACGCTGT
TCTATAAAC---------AAAAACGATGTGGTGGAACCCACCATTGCTCGGTGAGCTTTTGCCGTCTCTGCGCTGGCCAA
TTACGGTCACCACCTGTCATCGAGCGGCCGCCCCGAGCCCTG
>chr2B_393
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------------------------------------------------------------------------TTCTCCCT
CCCCCTGTTCTAAAT-TGTACTGTAGTCAGCT---AAAAAACTGTACTGTAGTTTTTTATTTTTCGGGGAACTGTACTGT
AGTTTCAACCTACTAGAAAATCATAATCCTCTGCAAGAAGTGGGGGGAACAAGTTGCTACAATAAAGAAGAGTAGAAAAC
CACAAAAATGCTGAAGATGGCCAGGCACGACCCTGGAGCAGCAGGAACGGCTTAACCGCCGATACCTAGTACCAACAACA
CAAGAGAAAGTTACATCACCAACCTCACCAAACACCCCCATTCCTCCCCGCGATCACATATTCAAATCAGAACAGACACA
GGAAAGCGGGAGAAGACCGTTGCACCTCCCCATTTTACAACCTTTTCGGTCGCTAGCTCGCGTGTGTCGCTCGCTCGCTT
AATCTGCAACACCGTCCCCTGGTCGCCTTACAAGATTAGGTCAATTATTTCCAGCGACGCGCTCGAAAGATTAGGTTACC
CAATCCTCAACCAGAACCGGCGCTCAGGGAACTCATATATATCCAAAGCTTTTGACGATGCAATCTAAGTTAATTTTTCT
TATCTCTGCAATCTGCACTAGCATATCGGGATACCGCAGCGTCCGGCCATGGCCCAAGCTCGCGTCGCCCTCGCGCTGTG
CGCT---CTGCTCCTCCATGGCGTCGCCTGGGAGGCGCGGGCGGCGTCGTACACCGTCGGGGACAGCGCCGGCTGGGACA
TCAGCGCCGACCTGCAGTCGTGGGCCGCCGCCAAAATATTCAACGTCGGCGACGTTCTAGGT----ATGAATCACGCTAC
TTACTGTTTTAGTTACGCTCGTTTTGGCCGATCAATTATCAGTTTTGCTTA--ACCACTTGTCCACGTGCGCC-------
-TTGTGATCGATCTCCAGTGTTCACGTACTCCAAGACCCACACCCTGGACGAGGTGGACGCGGCGGGGTACAAGAGCTGC
AGCGCCGCCAACGCGCTGCTCTCCAGCAGCGACGGCAACACGACGGTGCCCCTGACGGCGGGCGGCGACCGGTACTTCAT
CTGCGGCCACCAGATGCACTGCCTGGGCGGCATGAAGCTGCACGTGCACGTCACCTCGCCAGCCGGCTCCACGCCGCAGG
GAAGCCCCGCG------GGAGCCGGCGCCGGCGCCCCGCTGGCGAGCCCCGGCGCCGCTCTCGGCCCGGCTGGCGGCACC
GACGACGACGCCGGCATCCCCAGGCTCGACCTCGGCGGGTCGCACCGGCTGGGGATGGTGTGGCCCGCGCTGGCGACATT
GTGGTTGTGCCTAGCTGCGGCTCTGTTTGT-----------------------------ATGAAA---------------
--------------GTTTTTGTCAAACTTATTGCTCGTTCTGAGTGATTTTTAAACCTTTCCACTCTGTGTTGTTTATGT
GCAAAACGGGTCGATCGGGGTATCAAACGGAGGCCGAAAAATGGCTCTTGGTGGGTGGCCAAAACCTCGCTACTCATCAC
AGCAAAGGCT-GTACGAATTTGTCGTGTCGTGT--CAGCGTGACGCGCCCACATGGACACGCGTCTTGGGCGTACGTACC
ACGTACTGTTGTTCTTGTTCGGTTGGTTCGTGTAT-------------AGCACGGACCAGGGCAGCAGGTGGCGTATCAC
TTCCGAAGTCGCGGCTCTGTAGGAAGGATAATTTCCACTGTGCTGGTAACAAGGTGAATAGCAAGGATCTGCATTTAATT
GGCAAATGTTAAAAAATATGGCTTCAGATTTTTAGCGTTTGTCAACAAACATCCAGAGTTGCCATGCGAAAAAAGATAAA
TTTCTCAGAT-------TGTGGCCTAAGAGTTGAC--------AAGTGAAAATTCTCATGTAGTGTAAAATTTGTC--GA
AAAACTTTCATATTGCAGCGGGTAATTGTCATGCGTTCGATCGGGATCAGACGTTATGTATCCGAGGGTG----TCACAT
TTTTAACCTTGAAAATTCGACATCAAATATATATTAGGGTTCTTTTAATTAGACAAAAGACATCGTTCTATGTGGACAAG
TAGAAGCTCAAA-----------------ATACACGGGCAACATCTCCAACAGCTACCCTAAAGACATAGTAGTGCCCCA
AAACAGCCAGGTTGGGTGGCTTGGGG-AAA----AAAGACTCCAACAGCTACCCTATAGCCTTTCAAGAAAAAAACTGCC
CTATAGTTATATGGTGCCAACAAAATGACACCATGCTTAAAAGATTGCTACAAGCACTGCAAATATACATCACACGCCGC
CCAATAAACAAAAAACAAAAAAACGATGTGGTGGAACCCACCATTGCTCAGTGAACTTTCGCC-----------------
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>chr2A_474
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-------------------------------------------------------------------------C------
AGTTTCAACCTACTAGAAAACCAAAATCCTCTCCAAGAAGT-GAGGGAACAAGTAGCTATAAAAAAGAAGAGTAGAAAAC
CACAAAAATGGTGAAGATGGCCCGGCACGAGCCTGGAGCGGCAGGAACAGCTTAACCGCCGATACCTAGTACCAACGGCA
CAAGAGAAAGTTGCGTCACCAA---------ACACCCCCATTCATCCCCGCGATCACATATTCAAATCAGAACAAGCACA
C----------GAAGACCGTTGCACCTCCCCATTTTACAACCTTTTCAGCCGCTAGCCCGCGTGTGTCGCTCGCTTAATC
AATCTGCAACACCGTCCCCTGGTCGCCTTACAAGATTAGGTCGATTATTTCCAGCGACGCGCTCGAAAGATTAGGTTACC
CAATCCTCAACAAGAACCGGCGCTCAGGGAGCTCATATATATCCAA-GCTCTTGACGATGCAGTATGAGTTAATTTTTCT
TATCTCTGCAATCTGCACTAGCATACAT------------------CCATGGCCCAAGCTGGCGTCGCTCTCGCGCTGTG
CGCCCT---GCTCCTCCACGGCGTCGCCTGGGAGGCGCGGGCGGCGTCGTACACCGTCGGGAACAGCGCCGGCTGGGACA
TCAGCGCCGACCTCCAGTCGTGGGCCGCCGCCAAGATATTCAACGTCGGCGACGTTCTAGGTATGAATGAATCACGCTAC
TTACTGTTTTAGCTACGCTT-------------AATGATCAGTTTTGCTTA--ACCACTTGTCCACGTGCGCC-------
-TTGTGATCGATCTGCAGTGTTCACGTACTCCAAGACCCACACCCTGGACGAGGTGGACGCGGCGGGGTTCAAGAGCTGC
AGCGCCGCCAACGCGCTGCTCTCCAGCAGCGACGGCAACACGACGGTGCCCCTGACGGCCGGCGGCGACCGGTACTTCAT
CTGCGGCCACCAGATGCACTGCCTCGGCGGCATGAAGCTGCACGTGCACGTCACCTCGCCAGCCGGCTCCACGCCGCAGG
GAGCCCCCGCGGGAACCGGAGCCGGCGCCGGCGCCCCGCTGGCAAGCCCGGGCGCCGCTCTCGGCCCGGCCGGCGGCACC
GACGACGACGCCGGCATCCCCAGGCTCGACCTCGGCGGATCGCACCGGGTGGGGGTCGTGTGGCCCGCGCTGACGGCGTT
GTGGTTGTGCCTAGCTGCGGCTCTGCTTGC-----------------------------ATGAAAGTTTTTGTTTTTAGA
AGCGCTGCATGAAAGTTTTTGTCAAACTTATTGCTCGTTCTGAGTGATTTTTAACCATTTCTACTGTGTGTTGTTTATGT
GCAAAACGGGTCGATCTGGGCATCAAACGGAGGCCGAAAAATGGCTCCTGGTGGGTGGCCAAAACCTCGCTACTCACGGC
CAGGTTGTACAGTACGAAATTGTCGTCTTGTGT--CAGCGTGACGCGCCCACATGGACACGCGTCTTGGGCGTACGTACC
ACGCACTGTTGTTCTTGTTCGGTAGGTTTGTGTATACGTATATACAGTAGCACGGACAAGGGGAGCAGGTGGCGTATCAC
TTTCGAAGCCGCGGCGCTGTAGGAAGGATGATTTTCACTATGCTGGTAATAAGGTGAATAGCAACGATCTGATTTTATTT
GGCAAATGCT-AAAAGTATGGCGTCTGATTTTTAGCGTTTGTCAACAAACATCCAGAGTTCCCATGCGAAAAAAGATAAA
TTTCTCAGACTGTTCACTGTTGCGTAAGATTTGACATGCTCTAAAGTGAAAATTGTCATATAGTGTAAAATTTGTCAGAA
AAAACTTTCATATGGCAGCGGGTAATTGCCATGCATTCAATCAGGATCAGACGTTATGTATCTGAGGGTGGGTGTCAGAT
TTTTAATC---------CGACATCGAATATATATTAGGGTTCTTTTTATTAGACAAAAAACATCAC-------GGACAAG
TAGAAGCTCAAATGTAGGTTTTTGGTATGATACACAGGCAACATCTCCAACAGCTGCCCTAAAGA---------------
-------CAGGTTGGGTGGCTTGGGGCAAA----AAAGTCTCCAACAACTACCCTATTG---------------------
--------ATATATTGCCGAAAAAATGCCACCATGCTTAAAATTTTGCTACGAATGTTGCAAATATGCGTCACGCGCTGC
CCAATAAAC---------AAAAACGATGTGGTGGAACCCACCATTGCTCGGTGAACTTTCATAGTCACTGCGCTG-----
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-S------------SS-----------SSSSSSSS-------------S---------S-----S-S--SSSS-------
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-------S----------------------------------------------------S-------------------
---------------------------S----------------------------------------------------
S-----------------------------------------------------------------S-------------
----S---S-----------------------------------------------------------------------
----------------------------------S--------------------------------------S------
S-------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------------------------------------------S---SSSSS-SSS
SS-SS-SSS-SSS-S-S--SS--SSSS-SSSSSS-SSS-SS-S--SS--S-SS---------------SSS-SSSSSSSS
S---S---------------------------------------------------------------------------
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------------------------------------------------------------------------SS---S--
-------S-------------------------------S----------------------------------------
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------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
--------------------------------------------------------S------------SS---S-SSSS
SSS-------------------------------------------S---------------------------------
---------------S-----------------SS---------------------------------------------
-----------------S-S------S-----------------------------------------------------
----------------------------------------------S--------------S---S-----S--------
-----------------S------S--S------------------------------------------------SS--
------S----------S--------------------S---------------S--S----------------------
-------S-------S---------S-----------S---S--------------------------------------
-----------------------S-----------S-S--------------------------------S--------S
----------------------------------------------------S------------------S---S-SS-
-----------------S------------SSSS-----------S----S-S---------------------------
------S---------S-----------------S---------------S----------------------------S
S-S---------------------------------------------------S----S------S--------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_62
------------------------------------------ACGGTTGGCCTACGAAACAT------------------
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>reverse_1247
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----------------------------------------------ACTGACCACCACTTGTCCAC--------------
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>forward_1241
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---------------------TTCGCTCGATCGCAGCTTAT---------------------------------------
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>reverse_2805
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----GGTCACCACCTGTCATCGAG------------------
