Multiple sequence alignment - TraesCS2D01G372100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G372100 chr2D 100.000 4067 0 0 1 4067 476278868 476274802 0.000000e+00 7511.0
1 TraesCS2D01G372100 chr2D 79.677 433 66 10 8 429 616993695 616993274 3.980000e-75 292.0
2 TraesCS2D01G372100 chr2D 85.507 207 23 5 3865 4065 476261670 476261465 4.120000e-50 209.0
3 TraesCS2D01G372100 chr2D 88.618 123 13 1 3641 3763 476261872 476261751 9.110000e-32 148.0
4 TraesCS2D01G372100 chr2D 100.000 40 0 0 3735 3774 476275097 476275058 1.570000e-09 75.0
5 TraesCS2D01G372100 chr2D 100.000 40 0 0 3772 3811 476275134 476275095 1.570000e-09 75.0
6 TraesCS2D01G372100 chr2A 93.865 3162 169 18 449 3595 618117740 618114589 0.000000e+00 4741.0
7 TraesCS2D01G372100 chr2A 85.714 273 26 9 3798 4058 618114371 618114100 4.000000e-70 276.0
8 TraesCS2D01G372100 chr2A 83.333 276 35 8 3800 4067 618103154 618102882 1.130000e-60 244.0
9 TraesCS2D01G372100 chr2A 77.778 252 41 11 3815 4056 661155188 661154942 1.520000e-29 141.0
10 TraesCS2D01G372100 chr2A 93.827 81 5 0 3583 3663 618114571 618114491 5.520000e-24 122.0
11 TraesCS2D01G372100 chr2B 94.331 2999 151 15 447 3439 557046953 557043968 0.000000e+00 4578.0
12 TraesCS2D01G372100 chr2B 91.429 105 7 2 3440 3543 557043895 557043792 4.240000e-30 143.0
13 TraesCS2D01G372100 chr4D 83.478 460 53 15 1 448 483986706 483987154 1.360000e-109 407.0
14 TraesCS2D01G372100 chr4B 81.210 463 60 17 1 448 577047811 577047361 8.370000e-92 348.0
15 TraesCS2D01G372100 chr4B 80.755 265 37 11 3798 4057 139758460 139758205 1.150000e-45 195.0
16 TraesCS2D01G372100 chr7D 80.444 450 60 16 11 448 565669815 565670248 6.560000e-83 318.0
17 TraesCS2D01G372100 chr1A 90.393 229 18 3 1 229 447738724 447738500 8.550000e-77 298.0
18 TraesCS2D01G372100 chr5B 89.831 236 17 6 1 234 261184499 261184269 3.070000e-76 296.0
19 TraesCS2D01G372100 chr5B 79.821 223 27 15 3798 4007 645993885 645994102 3.280000e-31 147.0
20 TraesCS2D01G372100 chr5D 86.692 263 27 6 1 259 442103484 442103226 6.650000e-73 285.0
21 TraesCS2D01G372100 chr5D 77.755 481 35 33 1 448 367694760 367695201 3.160000e-56 230.0
22 TraesCS2D01G372100 chr3D 87.451 255 23 6 7 259 611379432 611379185 6.650000e-73 285.0
23 TraesCS2D01G372100 chr3D 78.008 241 28 12 237 459 104343155 104343388 1.190000e-25 128.0
24 TraesCS2D01G372100 chr1D 86.364 264 26 9 1 262 360436971 360437226 3.100000e-71 279.0
25 TraesCS2D01G372100 chr5A 82.072 251 26 13 3798 4034 594413597 594413352 3.210000e-46 196.0
26 TraesCS2D01G372100 chr5A 78.537 205 27 12 3798 3988 642502042 642501841 7.140000e-23 119.0
27 TraesCS2D01G372100 chr7B 79.443 287 39 15 3798 4067 674079240 674078957 6.940000e-43 185.0
28 TraesCS2D01G372100 chr7B 78.486 251 37 10 3798 4034 61762475 61762722 9.110000e-32 148.0
29 TraesCS2D01G372100 chr6B 82.184 174 21 7 291 459 161596208 161596040 1.520000e-29 141.0
30 TraesCS2D01G372100 chr1B 76.978 278 43 11 3798 4058 482467855 482468128 5.480000e-29 139.0
31 TraesCS2D01G372100 chr7A 80.108 186 23 7 3865 4039 438215511 438215693 4.270000e-25 126.0
32 TraesCS2D01G372100 chr6D 75.845 207 24 11 245 445 369500781 369500967 9.370000e-12 82.4
33 TraesCS2D01G372100 chr3B 100.000 30 0 0 802 831 651375010 651374981 5.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G372100 chr2D 476274802 476278868 4066 True 2553.666667 7511 100.000000 1 4067 3 chr2D.!!$R3 4066
1 TraesCS2D01G372100 chr2A 618114100 618117740 3640 True 1713.000000 4741 91.135333 449 4058 3 chr2A.!!$R3 3609
2 TraesCS2D01G372100 chr2B 557043792 557046953 3161 True 2360.500000 4578 92.880000 447 3543 2 chr2B.!!$R1 3096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 538 0.035152 TGCTGTGGCCTAATGGAGTG 60.035 55.0 3.32 0.0 37.74 3.51 F
1180 1184 0.031449 GCTTGCTTTTGCCCGTTGTA 59.969 50.0 0.00 0.0 46.87 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1734 0.588252 TGAGAAGCTTCTTTGCGTGC 59.412 50.0 29.02 15.14 37.73 5.34 R
3100 3113 0.106669 GAGGGAGCACAATTACCCCC 60.107 60.0 0.00 0.00 42.97 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.254546 TCTCATGAAAGCACAACCGT 57.745 45.000 0.00 0.00 0.00 4.83
20 21 1.872952 TCTCATGAAAGCACAACCGTG 59.127 47.619 0.00 0.00 46.56 4.94
28 29 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
45 46 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
46 47 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
47 48 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
48 49 1.172812 GGAAGCAAAACCGTGCCTCT 61.173 55.000 0.00 0.00 46.14 3.69
49 50 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
50 51 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
51 52 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
58 59 3.760035 GTGCCTCTCGCGGAAGGA 61.760 66.667 25.65 11.85 42.08 3.36
59 60 2.994995 TGCCTCTCGCGGAAGGAA 60.995 61.111 25.65 16.18 42.08 3.36
60 61 2.264794 GCCTCTCGCGGAAGGAAA 59.735 61.111 25.65 0.00 0.00 3.13
61 62 1.375523 GCCTCTCGCGGAAGGAAAA 60.376 57.895 25.65 0.00 0.00 2.29
62 63 0.953960 GCCTCTCGCGGAAGGAAAAA 60.954 55.000 25.65 0.00 0.00 1.94
103 104 5.622770 TTTTATTTCCGTTTCTGAGAGGC 57.377 39.130 0.00 0.00 0.00 4.70
104 105 2.859165 ATTTCCGTTTCTGAGAGGCA 57.141 45.000 0.00 0.00 0.00 4.75
105 106 1.878953 TTTCCGTTTCTGAGAGGCAC 58.121 50.000 0.00 0.00 0.00 5.01
106 107 0.319555 TTCCGTTTCTGAGAGGCACG 60.320 55.000 4.50 4.50 0.00 5.34
107 108 1.738099 CCGTTTCTGAGAGGCACGG 60.738 63.158 13.30 13.30 44.07 4.94
108 109 2.383527 CGTTTCTGAGAGGCACGGC 61.384 63.158 3.75 0.00 0.00 5.68
122 123 4.717629 CGGCCGTGACTCTTGCGA 62.718 66.667 19.50 0.00 0.00 5.10
123 124 2.357034 GGCCGTGACTCTTGCGAA 60.357 61.111 0.00 0.00 0.00 4.70
124 125 1.959226 GGCCGTGACTCTTGCGAAA 60.959 57.895 0.00 0.00 0.00 3.46
125 126 1.493311 GCCGTGACTCTTGCGAAAG 59.507 57.895 0.00 0.00 0.00 2.62
143 144 4.268687 CACAACCGTGCCTCTCTC 57.731 61.111 0.00 0.00 36.06 3.20
144 145 1.734477 CACAACCGTGCCTCTCTCG 60.734 63.158 0.00 0.00 36.06 4.04
145 146 1.901948 ACAACCGTGCCTCTCTCGA 60.902 57.895 0.00 0.00 33.89 4.04
146 147 1.289066 CAACCGTGCCTCTCTCGAA 59.711 57.895 0.00 0.00 33.89 3.71
147 148 0.319555 CAACCGTGCCTCTCTCGAAA 60.320 55.000 0.00 0.00 33.89 3.46
148 149 0.038159 AACCGTGCCTCTCTCGAAAG 60.038 55.000 0.00 0.00 33.89 2.62
149 150 1.807573 CCGTGCCTCTCTCGAAAGC 60.808 63.158 0.00 0.00 33.89 3.51
150 151 1.080501 CGTGCCTCTCTCGAAAGCA 60.081 57.895 0.00 0.00 33.89 3.91
151 152 0.667487 CGTGCCTCTCTCGAAAGCAA 60.667 55.000 0.00 0.00 32.30 3.91
152 153 1.512926 GTGCCTCTCTCGAAAGCAAA 58.487 50.000 0.00 0.00 32.30 3.68
153 154 1.873591 GTGCCTCTCTCGAAAGCAAAA 59.126 47.619 0.00 0.00 32.30 2.44
154 155 1.873591 TGCCTCTCTCGAAAGCAAAAC 59.126 47.619 0.00 0.00 0.00 2.43
155 156 1.197949 GCCTCTCTCGAAAGCAAAACC 59.802 52.381 0.00 0.00 0.00 3.27
156 157 1.461127 CCTCTCTCGAAAGCAAAACCG 59.539 52.381 0.00 0.00 0.00 4.44
157 158 2.135933 CTCTCTCGAAAGCAAAACCGT 58.864 47.619 0.00 0.00 0.00 4.83
158 159 1.864711 TCTCTCGAAAGCAAAACCGTG 59.135 47.619 0.00 0.00 0.00 4.94
159 160 0.306533 TCTCGAAAGCAAAACCGTGC 59.693 50.000 0.00 0.00 45.28 5.34
160 161 0.660300 CTCGAAAGCAAAACCGTGCC 60.660 55.000 0.00 0.00 46.14 5.01
161 162 1.098712 TCGAAAGCAAAACCGTGCCT 61.099 50.000 0.00 0.00 46.14 4.75
162 163 0.248866 CGAAAGCAAAACCGTGCCTT 60.249 50.000 0.00 0.00 46.14 4.35
163 164 1.801025 CGAAAGCAAAACCGTGCCTTT 60.801 47.619 0.00 0.00 46.14 3.11
164 165 1.858458 GAAAGCAAAACCGTGCCTTTC 59.142 47.619 0.00 0.00 46.14 2.62
165 166 0.248866 AAGCAAAACCGTGCCTTTCG 60.249 50.000 0.00 0.00 46.14 3.46
166 167 2.300066 GCAAAACCGTGCCTTTCGC 61.300 57.895 0.00 0.00 38.66 4.70
213 214 3.963383 TTTTTCGTTTCTGAGAGGCAC 57.037 42.857 0.00 0.00 0.00 5.01
214 215 1.497991 TTTCGTTTCTGAGAGGCACG 58.502 50.000 4.99 4.99 0.00 5.34
215 216 0.319555 TTCGTTTCTGAGAGGCACGG 60.320 55.000 9.92 0.00 0.00 4.94
216 217 2.383527 CGTTTCTGAGAGGCACGGC 61.384 63.158 3.75 0.00 0.00 5.68
230 231 4.717629 CGGCCGTGACTCTTGCGA 62.718 66.667 19.50 0.00 0.00 5.10
231 232 2.811317 GGCCGTGACTCTTGCGAG 60.811 66.667 0.00 0.00 43.10 5.03
232 233 2.258591 GCCGTGACTCTTGCGAGA 59.741 61.111 2.99 2.99 39.74 4.04
242 243 3.584406 CTCTTGCGAGAGGAGAAGAAA 57.416 47.619 21.73 0.00 44.69 2.52
243 244 3.919216 CTCTTGCGAGAGGAGAAGAAAA 58.081 45.455 21.73 0.00 44.69 2.29
244 245 3.919216 TCTTGCGAGAGGAGAAGAAAAG 58.081 45.455 0.00 0.00 0.00 2.27
245 246 3.574396 TCTTGCGAGAGGAGAAGAAAAGA 59.426 43.478 0.00 0.00 0.00 2.52
246 247 4.039245 TCTTGCGAGAGGAGAAGAAAAGAA 59.961 41.667 0.00 0.00 0.00 2.52
247 248 4.336889 TGCGAGAGGAGAAGAAAAGAAA 57.663 40.909 0.00 0.00 0.00 2.52
248 249 4.703897 TGCGAGAGGAGAAGAAAAGAAAA 58.296 39.130 0.00 0.00 0.00 2.29
249 250 4.511826 TGCGAGAGGAGAAGAAAAGAAAAC 59.488 41.667 0.00 0.00 0.00 2.43
250 251 4.376514 GCGAGAGGAGAAGAAAAGAAAACG 60.377 45.833 0.00 0.00 0.00 3.60
251 252 4.376514 CGAGAGGAGAAGAAAAGAAAACGC 60.377 45.833 0.00 0.00 0.00 4.84
252 253 3.495001 AGAGGAGAAGAAAAGAAAACGCG 59.505 43.478 3.53 3.53 0.00 6.01
253 254 3.203716 AGGAGAAGAAAAGAAAACGCGT 58.796 40.909 5.58 5.58 0.00 6.01
254 255 3.626217 AGGAGAAGAAAAGAAAACGCGTT 59.374 39.130 20.79 20.79 0.00 4.84
255 256 4.095932 AGGAGAAGAAAAGAAAACGCGTTT 59.904 37.500 30.36 30.36 0.00 3.60
256 257 4.796830 GGAGAAGAAAAGAAAACGCGTTTT 59.203 37.500 41.02 41.02 44.59 2.43
257 258 5.287752 GGAGAAGAAAAGAAAACGCGTTTTT 59.712 36.000 40.53 29.08 42.26 1.94
305 306 8.631480 TTTTTATCCTAAAGTTCAGGAAGACC 57.369 34.615 0.00 0.00 45.21 3.85
306 307 3.955650 TCCTAAAGTTCAGGAAGACCG 57.044 47.619 0.00 0.00 39.28 4.79
307 308 2.565834 TCCTAAAGTTCAGGAAGACCGG 59.434 50.000 0.00 0.00 39.28 5.28
308 309 2.302157 CCTAAAGTTCAGGAAGACCGGT 59.698 50.000 6.92 6.92 41.83 5.28
309 310 2.256117 AAAGTTCAGGAAGACCGGTG 57.744 50.000 14.63 0.00 41.83 4.94
310 311 1.420430 AAGTTCAGGAAGACCGGTGA 58.580 50.000 14.63 0.00 41.83 4.02
311 312 1.420430 AGTTCAGGAAGACCGGTGAA 58.580 50.000 14.63 5.09 41.83 3.18
312 313 1.766496 AGTTCAGGAAGACCGGTGAAA 59.234 47.619 14.63 0.00 41.83 2.69
313 314 2.171870 AGTTCAGGAAGACCGGTGAAAA 59.828 45.455 14.63 0.00 41.83 2.29
314 315 2.946990 GTTCAGGAAGACCGGTGAAAAA 59.053 45.455 14.63 0.00 41.83 1.94
315 316 2.567985 TCAGGAAGACCGGTGAAAAAC 58.432 47.619 14.63 0.00 41.83 2.43
316 317 1.607148 CAGGAAGACCGGTGAAAAACC 59.393 52.381 14.63 6.78 46.60 3.27
362 363 4.695217 AAAAACTGAAAAGACGTGCTGA 57.305 36.364 0.00 0.00 0.00 4.26
363 364 4.695217 AAAACTGAAAAGACGTGCTGAA 57.305 36.364 0.00 0.00 0.00 3.02
364 365 4.695217 AAACTGAAAAGACGTGCTGAAA 57.305 36.364 0.00 0.00 0.00 2.69
365 366 4.695217 AACTGAAAAGACGTGCTGAAAA 57.305 36.364 0.00 0.00 0.00 2.29
366 367 4.695217 ACTGAAAAGACGTGCTGAAAAA 57.305 36.364 0.00 0.00 0.00 1.94
367 368 5.248870 ACTGAAAAGACGTGCTGAAAAAT 57.751 34.783 0.00 0.00 0.00 1.82
368 369 6.371809 ACTGAAAAGACGTGCTGAAAAATA 57.628 33.333 0.00 0.00 0.00 1.40
369 370 6.791303 ACTGAAAAGACGTGCTGAAAAATAA 58.209 32.000 0.00 0.00 0.00 1.40
370 371 7.254852 ACTGAAAAGACGTGCTGAAAAATAAA 58.745 30.769 0.00 0.00 0.00 1.40
371 372 7.757624 ACTGAAAAGACGTGCTGAAAAATAAAA 59.242 29.630 0.00 0.00 0.00 1.52
372 373 8.467402 TGAAAAGACGTGCTGAAAAATAAAAA 57.533 26.923 0.00 0.00 0.00 1.94
393 394 4.653806 AAAACGAAATCTGAAGAGAGCG 57.346 40.909 0.00 0.00 0.00 5.03
394 395 3.305398 AACGAAATCTGAAGAGAGCGT 57.695 42.857 0.00 0.00 36.54 5.07
395 396 2.869897 ACGAAATCTGAAGAGAGCGTC 58.130 47.619 0.00 0.00 32.30 5.19
396 397 2.490115 ACGAAATCTGAAGAGAGCGTCT 59.510 45.455 0.00 0.00 36.94 4.18
397 398 3.690139 ACGAAATCTGAAGAGAGCGTCTA 59.310 43.478 0.00 0.00 32.65 2.59
398 399 4.201871 ACGAAATCTGAAGAGAGCGTCTAG 60.202 45.833 0.00 0.00 32.65 2.43
399 400 4.034626 CGAAATCTGAAGAGAGCGTCTAGA 59.965 45.833 0.00 0.00 32.65 2.43
400 401 5.499139 AAATCTGAAGAGAGCGTCTAGAG 57.501 43.478 0.00 0.00 32.65 2.43
401 402 2.285083 TCTGAAGAGAGCGTCTAGAGC 58.715 52.381 0.00 0.00 32.65 4.09
402 403 1.003972 CTGAAGAGAGCGTCTAGAGCG 60.004 57.143 0.00 1.29 40.04 5.03
408 409 2.945066 GCGTCTAGAGCGCGACAC 60.945 66.667 12.10 0.00 45.36 3.67
410 411 2.479650 GTCTAGAGCGCGACACGT 59.520 61.111 12.10 0.00 46.11 4.49
411 412 1.863880 GTCTAGAGCGCGACACGTG 60.864 63.158 15.48 15.48 46.11 4.49
412 413 2.577112 CTAGAGCGCGACACGTGG 60.577 66.667 21.57 3.72 46.11 4.94
413 414 4.771356 TAGAGCGCGACACGTGGC 62.771 66.667 21.57 17.52 46.11 5.01
522 523 4.079850 CTCGCTCTGGCCTGCTGT 62.080 66.667 3.32 0.00 34.44 4.40
536 538 0.035152 TGCTGTGGCCTAATGGAGTG 60.035 55.000 3.32 0.00 37.74 3.51
554 556 1.288127 GTAGTCCGTGGCTCGTTGT 59.712 57.895 8.25 0.00 37.94 3.32
602 604 2.049156 CGTCGTCTTCAGCAGCCA 60.049 61.111 0.00 0.00 0.00 4.75
699 703 1.763968 GATAACACCCAAAGCCCCTC 58.236 55.000 0.00 0.00 0.00 4.30
700 704 1.285078 GATAACACCCAAAGCCCCTCT 59.715 52.381 0.00 0.00 0.00 3.69
701 705 0.696501 TAACACCCAAAGCCCCTCTC 59.303 55.000 0.00 0.00 0.00 3.20
857 861 5.962433 TCTCGTGATTGGTTTCTAAGGTAG 58.038 41.667 0.00 0.00 0.00 3.18
864 868 2.570302 TGGTTTCTAAGGTAGGAGCACC 59.430 50.000 0.00 0.00 39.02 5.01
911 915 2.094417 CCGCTGAACCTCGAGAAATTTC 59.906 50.000 15.71 10.33 0.00 2.17
968 972 1.874129 ATCCCCAACCATCGTCTACA 58.126 50.000 0.00 0.00 0.00 2.74
1005 1009 2.404995 GCAGAGACAGTGCATGGCC 61.405 63.158 0.00 0.00 37.86 5.36
1088 1092 1.086696 CCTTATGCCACGGTCTGTTG 58.913 55.000 0.00 0.00 0.00 3.33
1105 1109 2.626266 TGTTGTACGCTCCTCTCTTTCA 59.374 45.455 0.00 0.00 0.00 2.69
1106 1110 3.258372 TGTTGTACGCTCCTCTCTTTCAT 59.742 43.478 0.00 0.00 0.00 2.57
1111 1115 4.314740 ACGCTCCTCTCTTTCATGATAC 57.685 45.455 0.00 0.00 0.00 2.24
1130 1134 1.348696 ACCCAATTCGTTCCGGTTAGT 59.651 47.619 0.00 0.00 0.00 2.24
1134 1138 3.120442 CCAATTCGTTCCGGTTAGTGAAC 60.120 47.826 0.00 0.00 37.97 3.18
1144 1148 2.869801 CGGTTAGTGAACAACTGAGCAA 59.130 45.455 0.00 0.00 41.64 3.91
1171 1175 2.066262 CTTGATGCTGGCTTGCTTTTG 58.934 47.619 4.89 0.00 0.00 2.44
1180 1184 0.031449 GCTTGCTTTTGCCCGTTGTA 59.969 50.000 0.00 0.00 46.87 2.41
1189 1193 2.141535 TGCCCGTTGTAAAATGTTGC 57.858 45.000 0.00 0.00 0.00 4.17
1215 1219 1.289109 GCGACATGTACTGCAACGGT 61.289 55.000 0.00 0.00 0.00 4.83
1306 1310 2.337359 TAACCTGAGCCCCTACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
1309 1313 1.780919 ACCTGAGCCCCTACTTGTTTT 59.219 47.619 0.00 0.00 0.00 2.43
1369 1375 7.547370 GTGAACTTACTGCTTTCTGTGATAGAT 59.453 37.037 0.00 0.00 34.80 1.98
1478 1484 4.836825 TCCTTCTGCTGTAATCTCCTTTG 58.163 43.478 0.00 0.00 0.00 2.77
1489 1495 3.589542 TCCTTTGCCCCACCCCTG 61.590 66.667 0.00 0.00 0.00 4.45
1500 1506 0.323725 CCACCCCTGCTTACTTGCAT 60.324 55.000 0.00 0.00 42.48 3.96
1512 1519 5.921976 TGCTTACTTGCATGAAATTGAAGTG 59.078 36.000 6.60 0.00 38.12 3.16
1515 1522 7.358683 GCTTACTTGCATGAAATTGAAGTGTTC 60.359 37.037 6.60 0.00 0.00 3.18
1518 1525 5.518848 TGCATGAAATTGAAGTGTTCAGT 57.481 34.783 0.00 0.00 41.38 3.41
1567 1574 2.693069 ACAGGATGACTTTGAAGCTCG 58.307 47.619 0.00 0.00 39.69 5.03
1727 1734 7.768120 AGATAGTTATGCTTTGAAAGTGAGGAG 59.232 37.037 6.81 0.00 0.00 3.69
1751 1758 5.634896 CACGCAAAGAAGCTTCTCAATAAT 58.365 37.500 28.58 9.85 36.28 1.28
1923 1934 8.918202 TTTAGTTTGAACACCACTATTCTGAT 57.082 30.769 0.00 0.00 0.00 2.90
2094 2105 8.575589 AGTATGAGCTCAACTTCTGTATCTATG 58.424 37.037 22.50 0.00 0.00 2.23
2100 2111 6.633634 GCTCAACTTCTGTATCTATGTACGTC 59.366 42.308 0.00 0.00 0.00 4.34
2101 2112 7.467539 GCTCAACTTCTGTATCTATGTACGTCT 60.468 40.741 0.00 0.00 0.00 4.18
2105 2116 8.453238 ACTTCTGTATCTATGTACGTCTGAAT 57.547 34.615 0.00 0.00 0.00 2.57
2112 2123 9.395707 GTATCTATGTACGTCTGAATAGGTTTG 57.604 37.037 0.00 0.00 0.00 2.93
2128 2139 4.583871 AGGTTTGCTATCTTGAGGTTGAG 58.416 43.478 0.00 0.00 0.00 3.02
2249 2260 2.124411 TCCCAGCCTTATGAGGTTACC 58.876 52.381 5.29 0.00 45.44 2.85
2311 2322 5.449314 CCGTTCATGTAAACCAACAACTTGA 60.449 40.000 0.00 0.00 32.02 3.02
2312 2323 6.030849 CGTTCATGTAAACCAACAACTTGAA 58.969 36.000 0.00 0.00 35.90 2.69
2444 2455 2.800544 CCCGTATCTTATTGAACGCCTG 59.199 50.000 0.00 0.00 34.13 4.85
2453 2464 7.209471 TCTTATTGAACGCCTGTGTTATTTT 57.791 32.000 0.00 0.00 30.75 1.82
2533 2544 8.414003 ACTTTAATTTTGTCTCCTCTTTTCCAC 58.586 33.333 0.00 0.00 0.00 4.02
2573 2585 9.436957 GATTATACTACACTAATGAATGGTGGG 57.563 37.037 0.00 0.00 35.53 4.61
2705 2717 6.128526 GCTCGTTCCTATGATATTTTAGGTGC 60.129 42.308 10.22 5.67 37.00 5.01
2830 2842 1.027357 CCAGATGCAATACCACCTGC 58.973 55.000 0.00 0.00 39.09 4.85
2911 2923 5.554822 TTGTTTACTGTTTCAGTGGTGAC 57.445 39.130 11.92 6.34 45.01 3.67
3071 3083 7.775093 TGCAGATATGAGGCTTAATTAGTTTGT 59.225 33.333 0.00 0.00 0.00 2.83
3079 3092 8.349983 TGAGGCTTAATTAGTTTGTCAGAAAAC 58.650 33.333 0.00 0.00 39.80 2.43
3096 3109 9.906660 GTCAGAAAACTCAGATGTAGATATAGG 57.093 37.037 0.00 0.00 0.00 2.57
3100 3113 9.202273 GAAAACTCAGATGTAGATATAGGCTTG 57.798 37.037 0.00 0.00 0.00 4.01
3110 3123 5.520748 AGATATAGGCTTGGGGGTAATTG 57.479 43.478 0.00 0.00 0.00 2.32
3203 3216 5.337578 TGTCAAAAGGGAAAAAGGTTGAG 57.662 39.130 0.00 0.00 0.00 3.02
3249 3269 3.008157 TGCAAGTTTGGGCATTCATTGAT 59.992 39.130 0.00 0.00 34.58 2.57
3349 3370 9.485206 AACTAGTAGTACAAGGTATTTTGTGTG 57.515 33.333 2.50 0.00 41.18 3.82
3388 3409 6.017770 ACACTTAAGTTGCGTGCTTTGTATAA 60.018 34.615 5.07 0.00 32.07 0.98
3421 3442 4.819630 TCAGAATTTTGTGGTAGTGTGACC 59.180 41.667 0.00 0.00 40.21 4.02
3482 3576 9.618410 GTGAAAACAGTTTTTAATCAATTGACG 57.382 29.630 11.07 0.00 34.94 4.35
3490 3584 2.572191 AATCAATTGACGGCAGCATG 57.428 45.000 11.07 0.00 40.87 4.06
3509 3604 1.164411 GACATGGATGCACGGACAAA 58.836 50.000 0.00 0.00 0.00 2.83
3540 3635 6.810911 AGAGTTATACCAGCTGATTACACAG 58.189 40.000 17.39 0.00 40.43 3.66
3610 3735 6.828273 CACCTATTGTGGAATCAATCTACCAA 59.172 38.462 0.00 0.00 41.52 3.67
3612 3737 7.503566 ACCTATTGTGGAATCAATCTACCAATG 59.496 37.037 0.00 0.00 38.68 2.82
3623 3748 6.872920 TCAATCTACCAATGGCCAATTAAAC 58.127 36.000 10.96 0.00 0.00 2.01
3643 3768 0.750546 TAGGGCGACGCTACATGTCT 60.751 55.000 20.77 8.41 34.17 3.41
3644 3769 1.878522 GGGCGACGCTACATGTCTG 60.879 63.158 20.77 0.00 34.17 3.51
3663 3788 4.082463 GTCTGCCGGTGGATTAATTGAAAA 60.082 41.667 1.90 0.00 0.00 2.29
3664 3789 4.082463 TCTGCCGGTGGATTAATTGAAAAC 60.082 41.667 1.90 0.00 0.00 2.43
3665 3790 3.574396 TGCCGGTGGATTAATTGAAAACA 59.426 39.130 1.90 0.00 0.00 2.83
3666 3791 4.221703 TGCCGGTGGATTAATTGAAAACAT 59.778 37.500 1.90 0.00 0.00 2.71
3667 3792 4.803613 GCCGGTGGATTAATTGAAAACATC 59.196 41.667 1.90 0.00 0.00 3.06
3668 3793 5.348164 CCGGTGGATTAATTGAAAACATCC 58.652 41.667 0.00 0.00 33.11 3.51
3669 3794 5.034152 CGGTGGATTAATTGAAAACATCCG 58.966 41.667 0.00 0.00 34.50 4.18
3670 3795 4.803613 GGTGGATTAATTGAAAACATCCGC 59.196 41.667 0.00 0.00 38.83 5.54
3671 3796 4.803613 GTGGATTAATTGAAAACATCCGCC 59.196 41.667 0.00 0.00 35.92 6.13
3672 3797 4.041723 GGATTAATTGAAAACATCCGCCG 58.958 43.478 0.00 0.00 0.00 6.46
3673 3798 2.553079 TAATTGAAAACATCCGCCGC 57.447 45.000 0.00 0.00 0.00 6.53
3674 3799 0.108851 AATTGAAAACATCCGCCGCC 60.109 50.000 0.00 0.00 0.00 6.13
3675 3800 0.965363 ATTGAAAACATCCGCCGCCT 60.965 50.000 0.00 0.00 0.00 5.52
3676 3801 1.582610 TTGAAAACATCCGCCGCCTC 61.583 55.000 0.00 0.00 0.00 4.70
3677 3802 2.750237 AAAACATCCGCCGCCTCC 60.750 61.111 0.00 0.00 0.00 4.30
3678 3803 3.268103 AAAACATCCGCCGCCTCCT 62.268 57.895 0.00 0.00 0.00 3.69
3679 3804 1.906105 AAAACATCCGCCGCCTCCTA 61.906 55.000 0.00 0.00 0.00 2.94
3680 3805 2.588856 AAACATCCGCCGCCTCCTAC 62.589 60.000 0.00 0.00 0.00 3.18
3681 3806 4.647615 CATCCGCCGCCTCCTACG 62.648 72.222 0.00 0.00 0.00 3.51
3685 3810 4.430765 CGCCGCCTCCTACGTTGT 62.431 66.667 0.00 0.00 0.00 3.32
3686 3811 2.047560 GCCGCCTCCTACGTTGTT 60.048 61.111 0.00 0.00 0.00 2.83
3687 3812 2.388232 GCCGCCTCCTACGTTGTTG 61.388 63.158 0.00 0.00 0.00 3.33
3688 3813 1.740296 CCGCCTCCTACGTTGTTGG 60.740 63.158 0.00 0.00 0.00 3.77
3689 3814 1.290955 CGCCTCCTACGTTGTTGGA 59.709 57.895 0.00 0.47 35.32 3.53
3690 3815 0.108329 CGCCTCCTACGTTGTTGGAT 60.108 55.000 0.00 0.00 36.91 3.41
3691 3816 1.369625 GCCTCCTACGTTGTTGGATG 58.630 55.000 0.00 0.32 36.91 3.51
3692 3817 2.012051 GCCTCCTACGTTGTTGGATGG 61.012 57.143 0.00 6.20 36.91 3.51
3693 3818 1.553248 CCTCCTACGTTGTTGGATGGA 59.447 52.381 0.00 0.00 36.91 3.41
3694 3819 2.418746 CCTCCTACGTTGTTGGATGGAG 60.419 54.545 0.00 0.00 36.91 3.86
3695 3820 1.066430 TCCTACGTTGTTGGATGGAGC 60.066 52.381 0.00 0.00 33.01 4.70
3696 3821 1.369625 CTACGTTGTTGGATGGAGCC 58.630 55.000 0.00 0.00 0.00 4.70
3697 3822 0.687920 TACGTTGTTGGATGGAGCCA 59.312 50.000 0.00 0.00 35.78 4.75
3698 3823 0.889186 ACGTTGTTGGATGGAGCCAC 60.889 55.000 0.00 0.00 37.75 5.01
3699 3824 0.888736 CGTTGTTGGATGGAGCCACA 60.889 55.000 0.00 0.00 37.75 4.17
3700 3825 1.327303 GTTGTTGGATGGAGCCACAA 58.673 50.000 0.00 0.00 37.75 3.33
3701 3826 1.686052 GTTGTTGGATGGAGCCACAAA 59.314 47.619 0.00 0.00 37.75 2.83
3702 3827 2.299867 GTTGTTGGATGGAGCCACAAAT 59.700 45.455 0.00 0.00 37.75 2.32
3703 3828 3.448093 TGTTGGATGGAGCCACAAATA 57.552 42.857 0.00 0.00 37.75 1.40
3704 3829 3.355378 TGTTGGATGGAGCCACAAATAG 58.645 45.455 0.00 0.00 37.75 1.73
3705 3830 3.245229 TGTTGGATGGAGCCACAAATAGT 60.245 43.478 0.00 0.00 37.75 2.12
3706 3831 3.281727 TGGATGGAGCCACAAATAGTC 57.718 47.619 0.00 0.00 31.66 2.59
3707 3832 2.575735 TGGATGGAGCCACAAATAGTCA 59.424 45.455 0.00 0.00 31.66 3.41
3708 3833 3.202818 TGGATGGAGCCACAAATAGTCAT 59.797 43.478 0.00 0.00 31.66 3.06
3709 3834 3.817647 GGATGGAGCCACAAATAGTCATC 59.182 47.826 0.00 0.00 0.00 2.92
3710 3835 2.905075 TGGAGCCACAAATAGTCATCG 58.095 47.619 0.00 0.00 0.00 3.84
3711 3836 2.213499 GGAGCCACAAATAGTCATCGG 58.787 52.381 0.00 0.00 0.00 4.18
3712 3837 2.158957 GGAGCCACAAATAGTCATCGGA 60.159 50.000 0.00 0.00 0.00 4.55
3713 3838 3.495100 GGAGCCACAAATAGTCATCGGAT 60.495 47.826 0.00 0.00 0.00 4.18
3714 3839 3.733337 AGCCACAAATAGTCATCGGATC 58.267 45.455 0.00 0.00 0.00 3.36
3715 3840 3.389329 AGCCACAAATAGTCATCGGATCT 59.611 43.478 0.00 0.00 0.00 2.75
3716 3841 3.743396 GCCACAAATAGTCATCGGATCTC 59.257 47.826 0.00 0.00 0.00 2.75
3717 3842 4.310769 CCACAAATAGTCATCGGATCTCC 58.689 47.826 0.00 0.00 0.00 3.71
3718 3843 4.310769 CACAAATAGTCATCGGATCTCCC 58.689 47.826 0.00 0.00 0.00 4.30
3719 3844 3.325135 ACAAATAGTCATCGGATCTCCCC 59.675 47.826 0.00 0.00 0.00 4.81
3720 3845 2.239681 ATAGTCATCGGATCTCCCCC 57.760 55.000 0.00 0.00 0.00 5.40
3721 3846 0.857675 TAGTCATCGGATCTCCCCCA 59.142 55.000 0.00 0.00 0.00 4.96
3722 3847 0.031111 AGTCATCGGATCTCCCCCAA 60.031 55.000 0.00 0.00 0.00 4.12
3723 3848 1.059913 GTCATCGGATCTCCCCCAAT 58.940 55.000 0.00 0.00 0.00 3.16
3724 3849 1.059098 TCATCGGATCTCCCCCAATG 58.941 55.000 0.00 0.00 0.00 2.82
3725 3850 1.059098 CATCGGATCTCCCCCAATGA 58.941 55.000 0.00 0.00 0.00 2.57
3726 3851 1.421268 CATCGGATCTCCCCCAATGAA 59.579 52.381 0.00 0.00 0.00 2.57
3727 3852 1.590591 TCGGATCTCCCCCAATGAAA 58.409 50.000 0.00 0.00 0.00 2.69
3728 3853 2.135189 TCGGATCTCCCCCAATGAAAT 58.865 47.619 0.00 0.00 0.00 2.17
3729 3854 2.158623 TCGGATCTCCCCCAATGAAATG 60.159 50.000 0.00 0.00 0.00 2.32
3730 3855 1.966354 GGATCTCCCCCAATGAAATGC 59.034 52.381 0.00 0.00 0.00 3.56
3731 3856 1.610522 GATCTCCCCCAATGAAATGCG 59.389 52.381 0.00 0.00 0.00 4.73
3732 3857 0.331278 TCTCCCCCAATGAAATGCGT 59.669 50.000 0.00 0.00 0.00 5.24
3733 3858 0.740737 CTCCCCCAATGAAATGCGTC 59.259 55.000 0.00 0.00 0.00 5.19
3734 3859 1.029408 TCCCCCAATGAAATGCGTCG 61.029 55.000 0.00 0.00 0.00 5.12
3761 3886 3.146066 TGCAACAAGGTAGATGTTCCAC 58.854 45.455 0.00 0.00 38.90 4.02
3763 3888 3.758554 GCAACAAGGTAGATGTTCCACAT 59.241 43.478 0.00 0.00 42.43 3.21
3764 3889 4.941263 GCAACAAGGTAGATGTTCCACATA 59.059 41.667 0.00 0.00 39.27 2.29
3765 3890 5.065218 GCAACAAGGTAGATGTTCCACATAG 59.935 44.000 0.00 0.00 39.27 2.23
3766 3891 6.406370 CAACAAGGTAGATGTTCCACATAGA 58.594 40.000 0.00 0.00 39.27 1.98
3767 3892 6.814954 ACAAGGTAGATGTTCCACATAGAT 57.185 37.500 0.00 0.00 39.27 1.98
3768 3893 7.914427 ACAAGGTAGATGTTCCACATAGATA 57.086 36.000 0.00 0.00 39.27 1.98
3769 3894 8.319057 ACAAGGTAGATGTTCCACATAGATAA 57.681 34.615 0.00 0.00 39.27 1.75
3770 3895 8.938883 ACAAGGTAGATGTTCCACATAGATAAT 58.061 33.333 0.00 0.00 39.27 1.28
3771 3896 9.212641 CAAGGTAGATGTTCCACATAGATAATG 57.787 37.037 0.00 0.00 39.27 1.90
3777 3902 9.857656 AGATGTTCCACATAGATAATGTCAATT 57.142 29.630 0.00 0.00 46.15 2.32
3779 3904 7.706159 TGTTCCACATAGATAATGTCAATTGC 58.294 34.615 0.00 0.00 46.15 3.56
3780 3905 7.338957 TGTTCCACATAGATAATGTCAATTGCA 59.661 33.333 0.00 2.71 46.15 4.08
3781 3906 7.878547 TCCACATAGATAATGTCAATTGCAA 57.121 32.000 0.00 0.00 46.15 4.08
3783 3908 7.338957 TCCACATAGATAATGTCAATTGCAACA 59.661 33.333 0.00 1.11 46.15 3.33
3784 3909 7.975058 CCACATAGATAATGTCAATTGCAACAA 59.025 33.333 0.00 0.00 46.15 2.83
3785 3910 9.016623 CACATAGATAATGTCAATTGCAACAAG 57.983 33.333 0.00 0.00 46.15 3.16
3788 3913 7.701539 AGATAATGTCAATTGCAACAAGGTA 57.298 32.000 0.00 0.00 0.00 3.08
3790 3915 7.611467 AGATAATGTCAATTGCAACAAGGTAGA 59.389 33.333 0.00 0.00 0.00 2.59
3791 3916 6.594788 AATGTCAATTGCAACAAGGTAGAT 57.405 33.333 0.00 0.00 0.00 1.98
3792 3917 5.375417 TGTCAATTGCAACAAGGTAGATG 57.625 39.130 0.00 0.00 0.00 2.90
3793 3918 4.826733 TGTCAATTGCAACAAGGTAGATGT 59.173 37.500 0.00 0.00 0.00 3.06
3794 3919 5.301551 TGTCAATTGCAACAAGGTAGATGTT 59.698 36.000 0.00 0.00 41.50 2.71
3795 3920 5.858581 GTCAATTGCAACAAGGTAGATGTTC 59.141 40.000 0.00 0.00 38.90 3.18
3796 3921 5.048083 TCAATTGCAACAAGGTAGATGTTCC 60.048 40.000 0.00 0.00 38.90 3.62
3805 3978 7.914427 ACAAGGTAGATGTTCCACATAGATA 57.086 36.000 0.00 0.00 39.27 1.98
3810 3983 8.589338 AGGTAGATGTTCCACATAGATAATGTC 58.411 37.037 0.00 0.00 46.15 3.06
3819 3992 2.281539 TAGATAATGTCGCGGGAGGA 57.718 50.000 6.13 0.00 0.00 3.71
3824 3997 0.899720 AATGTCGCGGGAGGACTTTA 59.100 50.000 6.13 0.00 35.45 1.85
3829 4002 1.359459 CGCGGGAGGACTTTAGCAAC 61.359 60.000 0.00 0.00 0.00 4.17
3831 4004 1.679032 GCGGGAGGACTTTAGCAACAT 60.679 52.381 0.00 0.00 0.00 2.71
3834 4007 3.741388 CGGGAGGACTTTAGCAACATAGG 60.741 52.174 0.00 0.00 0.00 2.57
3872 4047 3.347958 TTGCCTTCGTAGTTTTTGCAG 57.652 42.857 0.00 0.00 0.00 4.41
3882 4057 5.063438 TCGTAGTTTTTGCAGCATAGATGAC 59.937 40.000 0.00 0.00 0.00 3.06
3913 4088 6.454795 GGAGGACTTTTGCAACATGAATAAA 58.545 36.000 0.00 0.00 0.00 1.40
3914 4089 7.099120 GGAGGACTTTTGCAACATGAATAAAT 58.901 34.615 0.00 0.00 0.00 1.40
3915 4090 7.063780 GGAGGACTTTTGCAACATGAATAAATG 59.936 37.037 0.00 1.07 0.00 2.32
3916 4091 6.875195 AGGACTTTTGCAACATGAATAAATGG 59.125 34.615 0.00 0.00 31.46 3.16
3917 4092 6.650390 GGACTTTTGCAACATGAATAAATGGT 59.350 34.615 0.00 0.00 31.46 3.55
3918 4093 7.360269 GGACTTTTGCAACATGAATAAATGGTG 60.360 37.037 0.00 0.00 46.17 4.17
3959 4141 1.068541 TCGTCTGTGGTGTGAATCGAG 60.069 52.381 0.00 0.00 0.00 4.04
3967 4149 5.063204 TGTGGTGTGAATCGAGAAATTTCT 58.937 37.500 20.60 20.60 41.00 2.52
3993 4175 2.094894 CAGAGATGATGTTGCGTGGAAC 59.905 50.000 0.00 0.00 0.00 3.62
4025 4207 1.463553 AAGGCCCTTGTTGCGGAAAG 61.464 55.000 0.00 0.00 0.00 2.62
4026 4208 2.200337 GGCCCTTGTTGCGGAAAGT 61.200 57.895 0.00 0.00 0.00 2.66
4027 4209 0.891904 GGCCCTTGTTGCGGAAAGTA 60.892 55.000 0.00 0.00 0.00 2.24
4028 4210 1.173913 GCCCTTGTTGCGGAAAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
4039 4223 5.888691 TGCGGAAAGTATAAAAAGCATCA 57.111 34.783 0.00 0.00 0.00 3.07
4043 4227 6.136071 CGGAAAGTATAAAAAGCATCATCGG 58.864 40.000 0.00 0.00 0.00 4.18
4045 4229 5.438761 AAGTATAAAAAGCATCATCGGCC 57.561 39.130 0.00 0.00 0.00 6.13
4060 4244 4.849329 GCCGGAGCGACGACGAAT 62.849 66.667 12.29 0.00 42.66 3.34
4061 4245 2.711311 CCGGAGCGACGACGAATA 59.289 61.111 12.29 0.00 42.66 1.75
4062 4246 1.368969 CCGGAGCGACGACGAATAG 60.369 63.158 12.29 0.00 42.66 1.73
4063 4247 2.004489 CGGAGCGACGACGAATAGC 61.004 63.158 12.29 1.00 42.66 2.97
4065 4249 1.011463 GAGCGACGACGAATAGCGA 60.011 57.895 12.29 0.00 44.57 4.93
4066 4250 0.987848 GAGCGACGACGAATAGCGAG 60.988 60.000 12.29 0.00 44.57 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.872952 CACGGTTGTGCTTTCATGAGA 59.127 47.619 0.00 0.00 39.67 3.27
1 2 2.320805 CACGGTTGTGCTTTCATGAG 57.679 50.000 0.00 0.00 39.67 2.90
21 22 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
22 23 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
23 24 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
24 25 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
29 30 1.172812 AGAGGCACGGTTTTGCTTCC 61.173 55.000 4.54 0.00 46.96 3.46
30 31 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
31 32 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
32 33 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
33 34 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
34 35 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
35 36 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
41 42 2.781595 TTTCCTTCCGCGAGAGGCAC 62.782 60.000 19.15 0.00 43.84 5.01
42 43 2.107041 TTTTCCTTCCGCGAGAGGCA 62.107 55.000 19.15 8.97 43.84 4.75
43 44 0.953960 TTTTTCCTTCCGCGAGAGGC 60.954 55.000 19.15 0.00 38.69 4.70
44 45 3.226884 TTTTTCCTTCCGCGAGAGG 57.773 52.632 18.22 18.22 0.00 3.69
80 81 5.533154 TGCCTCTCAGAAACGGAAATAAAAA 59.467 36.000 0.00 0.00 0.00 1.94
81 82 5.048991 GTGCCTCTCAGAAACGGAAATAAAA 60.049 40.000 0.00 0.00 0.00 1.52
82 83 4.454504 GTGCCTCTCAGAAACGGAAATAAA 59.545 41.667 0.00 0.00 0.00 1.40
83 84 4.000988 GTGCCTCTCAGAAACGGAAATAA 58.999 43.478 0.00 0.00 0.00 1.40
84 85 3.596214 GTGCCTCTCAGAAACGGAAATA 58.404 45.455 0.00 0.00 0.00 1.40
85 86 2.427506 GTGCCTCTCAGAAACGGAAAT 58.572 47.619 0.00 0.00 0.00 2.17
86 87 1.872237 CGTGCCTCTCAGAAACGGAAA 60.872 52.381 0.00 0.00 0.00 3.13
87 88 0.319555 CGTGCCTCTCAGAAACGGAA 60.320 55.000 0.00 0.00 0.00 4.30
88 89 1.289066 CGTGCCTCTCAGAAACGGA 59.711 57.895 0.00 0.00 0.00 4.69
89 90 1.738099 CCGTGCCTCTCAGAAACGG 60.738 63.158 8.44 8.44 46.69 4.44
90 91 2.383527 GCCGTGCCTCTCAGAAACG 61.384 63.158 0.00 0.00 0.00 3.60
91 92 2.035442 GGCCGTGCCTCTCAGAAAC 61.035 63.158 7.58 0.00 46.69 2.78
92 93 2.347490 GGCCGTGCCTCTCAGAAA 59.653 61.111 7.58 0.00 46.69 2.52
101 102 4.681978 AAGAGTCACGGCCGTGCC 62.682 66.667 45.55 38.78 46.75 5.01
102 103 3.414700 CAAGAGTCACGGCCGTGC 61.415 66.667 45.55 38.06 45.04 5.34
103 104 3.414700 GCAAGAGTCACGGCCGTG 61.415 66.667 45.04 45.04 46.64 4.94
105 106 4.717629 TCGCAAGAGTCACGGCCG 62.718 66.667 26.86 26.86 45.01 6.13
118 119 2.712539 CACGGTTGTGCTTTCGCA 59.287 55.556 0.00 0.00 45.60 5.10
126 127 2.142357 TCGAGAGAGGCACGGTTGTG 62.142 60.000 0.00 0.00 41.74 3.33
127 128 1.461091 TTCGAGAGAGGCACGGTTGT 61.461 55.000 0.00 0.00 43.69 3.32
128 129 0.319555 TTTCGAGAGAGGCACGGTTG 60.320 55.000 0.00 0.00 43.69 3.77
129 130 0.038159 CTTTCGAGAGAGGCACGGTT 60.038 55.000 0.00 0.00 43.69 4.44
130 131 1.587054 CTTTCGAGAGAGGCACGGT 59.413 57.895 0.00 0.00 43.69 4.83
131 132 1.807573 GCTTTCGAGAGAGGCACGG 60.808 63.158 7.23 0.00 43.69 4.94
132 133 0.667487 TTGCTTTCGAGAGAGGCACG 60.667 55.000 7.23 0.00 45.26 5.34
133 134 1.512926 TTTGCTTTCGAGAGAGGCAC 58.487 50.000 7.23 0.00 45.26 5.01
134 135 1.873591 GTTTTGCTTTCGAGAGAGGCA 59.126 47.619 7.23 0.00 44.45 4.75
135 136 1.197949 GGTTTTGCTTTCGAGAGAGGC 59.802 52.381 7.23 0.00 43.69 4.70
136 137 1.461127 CGGTTTTGCTTTCGAGAGAGG 59.539 52.381 7.23 0.00 43.69 3.69
137 138 2.096713 CACGGTTTTGCTTTCGAGAGAG 60.097 50.000 7.23 0.00 43.69 3.20
138 139 1.864711 CACGGTTTTGCTTTCGAGAGA 59.135 47.619 7.23 0.00 39.20 3.10
139 140 1.660333 GCACGGTTTTGCTTTCGAGAG 60.660 52.381 0.00 0.00 39.59 3.20
140 141 0.306533 GCACGGTTTTGCTTTCGAGA 59.693 50.000 0.00 0.00 39.59 4.04
141 142 0.660300 GGCACGGTTTTGCTTTCGAG 60.660 55.000 0.00 0.00 42.56 4.04
142 143 1.098712 AGGCACGGTTTTGCTTTCGA 61.099 50.000 0.00 0.00 42.56 3.71
143 144 0.248866 AAGGCACGGTTTTGCTTTCG 60.249 50.000 0.00 0.00 37.21 3.46
144 145 1.858458 GAAAGGCACGGTTTTGCTTTC 59.142 47.619 0.00 0.00 40.64 2.62
145 146 1.801025 CGAAAGGCACGGTTTTGCTTT 60.801 47.619 0.00 0.00 43.13 3.51
146 147 0.248866 CGAAAGGCACGGTTTTGCTT 60.249 50.000 0.00 0.00 42.56 3.91
147 148 1.358759 CGAAAGGCACGGTTTTGCT 59.641 52.632 0.00 0.00 42.56 3.91
148 149 2.300066 GCGAAAGGCACGGTTTTGC 61.300 57.895 0.00 0.00 42.87 3.68
149 150 2.008697 CGCGAAAGGCACGGTTTTG 61.009 57.895 0.00 0.00 43.84 2.44
150 151 2.330041 CGCGAAAGGCACGGTTTT 59.670 55.556 0.00 0.00 43.84 2.43
151 152 3.656045 CCGCGAAAGGCACGGTTT 61.656 61.111 8.23 0.00 43.84 3.27
152 153 4.612412 TCCGCGAAAGGCACGGTT 62.612 61.111 8.23 0.00 46.92 4.44
153 154 4.612412 TTCCGCGAAAGGCACGGT 62.612 61.111 8.23 0.00 46.92 4.83
155 156 3.788766 CCTTCCGCGAAAGGCACG 61.789 66.667 12.43 0.00 43.84 5.34
156 157 1.512156 TTTCCTTCCGCGAAAGGCAC 61.512 55.000 20.66 0.00 44.66 5.01
157 158 0.820074 TTTTCCTTCCGCGAAAGGCA 60.820 50.000 20.66 5.60 44.66 4.75
158 159 0.312729 TTTTTCCTTCCGCGAAAGGC 59.687 50.000 20.66 0.00 44.66 4.35
193 194 2.286833 CGTGCCTCTCAGAAACGAAAAA 59.713 45.455 0.00 0.00 36.38 1.94
194 195 1.864711 CGTGCCTCTCAGAAACGAAAA 59.135 47.619 0.00 0.00 36.38 2.29
195 196 1.497991 CGTGCCTCTCAGAAACGAAA 58.502 50.000 0.00 0.00 36.38 3.46
196 197 0.319555 CCGTGCCTCTCAGAAACGAA 60.320 55.000 5.92 0.00 36.38 3.85
197 198 1.289066 CCGTGCCTCTCAGAAACGA 59.711 57.895 5.92 0.00 36.38 3.85
198 199 2.383527 GCCGTGCCTCTCAGAAACG 61.384 63.158 0.00 0.00 0.00 3.60
199 200 2.035442 GGCCGTGCCTCTCAGAAAC 61.035 63.158 7.58 0.00 46.69 2.78
200 201 2.347490 GGCCGTGCCTCTCAGAAA 59.653 61.111 7.58 0.00 46.69 2.52
209 210 4.681978 AAGAGTCACGGCCGTGCC 62.682 66.667 45.55 38.78 46.75 5.01
210 211 3.414700 CAAGAGTCACGGCCGTGC 61.415 66.667 45.55 38.06 45.04 5.34
211 212 3.414700 GCAAGAGTCACGGCCGTG 61.415 66.667 45.04 45.04 46.64 4.94
213 214 4.717629 TCGCAAGAGTCACGGCCG 62.718 66.667 26.86 26.86 45.01 6.13
224 225 3.919216 TCTTTTCTTCTCCTCTCGCAAG 58.081 45.455 0.00 0.00 0.00 4.01
225 226 4.336889 TTCTTTTCTTCTCCTCTCGCAA 57.663 40.909 0.00 0.00 0.00 4.85
226 227 4.336889 TTTCTTTTCTTCTCCTCTCGCA 57.663 40.909 0.00 0.00 0.00 5.10
227 228 4.376514 CGTTTTCTTTTCTTCTCCTCTCGC 60.377 45.833 0.00 0.00 0.00 5.03
228 229 4.376514 GCGTTTTCTTTTCTTCTCCTCTCG 60.377 45.833 0.00 0.00 0.00 4.04
229 230 4.376514 CGCGTTTTCTTTTCTTCTCCTCTC 60.377 45.833 0.00 0.00 0.00 3.20
230 231 3.495001 CGCGTTTTCTTTTCTTCTCCTCT 59.505 43.478 0.00 0.00 0.00 3.69
231 232 3.247886 ACGCGTTTTCTTTTCTTCTCCTC 59.752 43.478 5.58 0.00 0.00 3.71
232 233 3.203716 ACGCGTTTTCTTTTCTTCTCCT 58.796 40.909 5.58 0.00 0.00 3.69
233 234 3.604065 ACGCGTTTTCTTTTCTTCTCC 57.396 42.857 5.58 0.00 0.00 3.71
234 235 5.926894 AAAACGCGTTTTCTTTTCTTCTC 57.073 34.783 36.93 0.00 38.27 2.87
280 281 7.389607 CGGTCTTCCTGAACTTTAGGATAAAAA 59.610 37.037 3.21 0.00 43.52 1.94
281 282 6.877322 CGGTCTTCCTGAACTTTAGGATAAAA 59.123 38.462 3.21 0.00 43.52 1.52
282 283 6.403878 CGGTCTTCCTGAACTTTAGGATAAA 58.596 40.000 3.21 0.00 43.52 1.40
283 284 5.105064 CCGGTCTTCCTGAACTTTAGGATAA 60.105 44.000 3.21 0.00 43.52 1.75
284 285 4.404715 CCGGTCTTCCTGAACTTTAGGATA 59.595 45.833 3.21 0.00 43.52 2.59
285 286 3.197983 CCGGTCTTCCTGAACTTTAGGAT 59.802 47.826 3.21 0.00 43.52 3.24
286 287 2.565834 CCGGTCTTCCTGAACTTTAGGA 59.434 50.000 0.00 0.00 42.43 2.94
287 288 2.302157 ACCGGTCTTCCTGAACTTTAGG 59.698 50.000 0.00 0.00 36.63 2.69
288 289 3.006537 TCACCGGTCTTCCTGAACTTTAG 59.993 47.826 2.59 0.00 0.00 1.85
289 290 2.967201 TCACCGGTCTTCCTGAACTTTA 59.033 45.455 2.59 0.00 0.00 1.85
290 291 1.766496 TCACCGGTCTTCCTGAACTTT 59.234 47.619 2.59 0.00 0.00 2.66
291 292 1.420430 TCACCGGTCTTCCTGAACTT 58.580 50.000 2.59 0.00 0.00 2.66
292 293 1.420430 TTCACCGGTCTTCCTGAACT 58.580 50.000 2.59 0.00 0.00 3.01
293 294 2.249844 TTTCACCGGTCTTCCTGAAC 57.750 50.000 2.59 0.00 30.87 3.18
294 295 2.946990 GTTTTTCACCGGTCTTCCTGAA 59.053 45.455 2.59 0.41 0.00 3.02
295 296 2.567985 GTTTTTCACCGGTCTTCCTGA 58.432 47.619 2.59 0.00 0.00 3.86
296 297 1.607148 GGTTTTTCACCGGTCTTCCTG 59.393 52.381 2.59 0.00 35.12 3.86
297 298 1.977056 GGTTTTTCACCGGTCTTCCT 58.023 50.000 2.59 0.00 35.12 3.36
341 342 4.695217 TCAGCACGTCTTTTCAGTTTTT 57.305 36.364 0.00 0.00 0.00 1.94
342 343 4.695217 TTCAGCACGTCTTTTCAGTTTT 57.305 36.364 0.00 0.00 0.00 2.43
343 344 4.695217 TTTCAGCACGTCTTTTCAGTTT 57.305 36.364 0.00 0.00 0.00 2.66
344 345 4.695217 TTTTCAGCACGTCTTTTCAGTT 57.305 36.364 0.00 0.00 0.00 3.16
345 346 4.695217 TTTTTCAGCACGTCTTTTCAGT 57.305 36.364 0.00 0.00 0.00 3.41
346 347 7.678194 TTTATTTTTCAGCACGTCTTTTCAG 57.322 32.000 0.00 0.00 0.00 3.02
347 348 8.467402 TTTTTATTTTTCAGCACGTCTTTTCA 57.533 26.923 0.00 0.00 0.00 2.69
371 372 4.511826 ACGCTCTCTTCAGATTTCGTTTTT 59.488 37.500 0.00 0.00 29.87 1.94
372 373 4.058817 ACGCTCTCTTCAGATTTCGTTTT 58.941 39.130 0.00 0.00 29.87 2.43
373 374 3.654414 ACGCTCTCTTCAGATTTCGTTT 58.346 40.909 0.00 0.00 29.87 3.60
374 375 3.057174 AGACGCTCTCTTCAGATTTCGTT 60.057 43.478 0.00 0.00 32.53 3.85
375 376 2.490115 AGACGCTCTCTTCAGATTTCGT 59.510 45.455 0.00 0.00 34.03 3.85
376 377 3.143807 AGACGCTCTCTTCAGATTTCG 57.856 47.619 0.00 0.00 0.00 3.46
377 378 5.493133 TCTAGACGCTCTCTTCAGATTTC 57.507 43.478 0.00 0.00 0.00 2.17
378 379 4.202010 GCTCTAGACGCTCTCTTCAGATTT 60.202 45.833 6.86 0.00 0.00 2.17
379 380 3.315191 GCTCTAGACGCTCTCTTCAGATT 59.685 47.826 6.86 0.00 0.00 2.40
380 381 2.878406 GCTCTAGACGCTCTCTTCAGAT 59.122 50.000 6.86 0.00 0.00 2.90
381 382 2.285083 GCTCTAGACGCTCTCTTCAGA 58.715 52.381 6.86 0.00 0.00 3.27
382 383 1.003972 CGCTCTAGACGCTCTCTTCAG 60.004 57.143 10.96 0.00 0.00 3.02
383 384 1.010580 CGCTCTAGACGCTCTCTTCA 58.989 55.000 10.96 0.00 0.00 3.02
384 385 3.817960 CGCTCTAGACGCTCTCTTC 57.182 57.895 10.96 0.00 0.00 2.87
392 393 2.645014 CGTGTCGCGCTCTAGACG 60.645 66.667 5.56 7.70 40.05 4.18
393 394 1.863880 CACGTGTCGCGCTCTAGAC 60.864 63.158 7.58 5.97 46.11 2.59
394 395 2.479198 CACGTGTCGCGCTCTAGA 59.521 61.111 7.58 0.00 46.11 2.43
395 396 2.577112 CCACGTGTCGCGCTCTAG 60.577 66.667 15.65 0.00 46.11 2.43
396 397 4.771356 GCCACGTGTCGCGCTCTA 62.771 66.667 15.65 0.00 46.11 2.43
430 431 1.132640 GACGATCAACGCCACTTGC 59.867 57.895 0.00 0.00 46.94 4.01
431 432 2.527671 TGACGATCAACGCCACTTG 58.472 52.632 0.00 0.00 46.94 3.16
435 436 2.019408 CACGTGACGATCAACGCCA 61.019 57.895 13.70 0.00 46.94 5.69
436 437 1.674611 CTCACGTGACGATCAACGCC 61.675 60.000 15.76 0.00 46.94 5.68
437 438 1.674611 CCTCACGTGACGATCAACGC 61.675 60.000 15.76 1.93 46.94 4.84
439 440 0.388649 AGCCTCACGTGACGATCAAC 60.389 55.000 15.76 0.00 0.00 3.18
440 441 1.132453 CTAGCCTCACGTGACGATCAA 59.868 52.381 15.76 0.00 0.00 2.57
441 442 0.733150 CTAGCCTCACGTGACGATCA 59.267 55.000 15.76 0.00 0.00 2.92
442 443 0.592754 GCTAGCCTCACGTGACGATC 60.593 60.000 15.76 3.89 0.00 3.69
443 444 1.313091 TGCTAGCCTCACGTGACGAT 61.313 55.000 15.76 12.48 0.00 3.73
444 445 1.923227 CTGCTAGCCTCACGTGACGA 61.923 60.000 15.76 1.20 0.00 4.20
445 446 1.515088 CTGCTAGCCTCACGTGACG 60.515 63.158 15.76 12.37 0.00 4.35
522 523 2.116238 GGACTACACTCCATTAGGCCA 58.884 52.381 5.01 0.00 42.51 5.36
527 528 1.479323 GCCACGGACTACACTCCATTA 59.521 52.381 0.00 0.00 0.00 1.90
554 556 0.539438 ATTCTCGCAACTGGGCCAAA 60.539 50.000 8.04 0.00 0.00 3.28
602 604 2.049433 CGGACAAGAACGGCGAGT 60.049 61.111 16.62 0.00 0.00 4.18
699 703 1.153745 CGGAGAAGAAGCCGTGGAG 60.154 63.158 0.00 0.00 42.49 3.86
700 704 2.970639 CGGAGAAGAAGCCGTGGA 59.029 61.111 0.00 0.00 42.49 4.02
779 783 4.736631 GTTGAGCCGAAACCGCGC 62.737 66.667 0.00 0.00 0.00 6.86
783 787 1.304134 ATGGGGTTGAGCCGAAACC 60.304 57.895 4.58 4.58 45.36 3.27
789 793 4.778143 ACGCGATGGGGTTGAGCC 62.778 66.667 15.93 0.00 35.54 4.70
792 796 4.090588 GGGACGCGATGGGGTTGA 62.091 66.667 15.93 0.00 39.74 3.18
835 839 5.105473 TCCTACCTTAGAAACCAATCACGAG 60.105 44.000 0.00 0.00 0.00 4.18
857 861 2.092753 TCATGGATGAAGAAGGTGCTCC 60.093 50.000 0.00 0.00 33.08 4.70
864 868 7.761249 GGGTTTAACAAATCATGGATGAAGAAG 59.239 37.037 0.00 0.00 40.69 2.85
968 972 3.173540 TGCAGCTGCGGATAAACAT 57.826 47.368 32.11 0.00 45.83 2.71
1088 1092 3.784701 TCATGAAAGAGAGGAGCGTAC 57.215 47.619 0.00 0.00 0.00 3.67
1130 1134 4.009675 AGTTTCTGTTGCTCAGTTGTTCA 58.990 39.130 8.75 0.00 43.97 3.18
1134 1138 4.621068 TCAAGTTTCTGTTGCTCAGTTG 57.379 40.909 8.75 6.74 43.97 3.16
1144 1148 2.283145 AGCCAGCATCAAGTTTCTGT 57.717 45.000 0.00 0.00 0.00 3.41
1152 1156 1.874739 GCAAAAGCAAGCCAGCATCAA 60.875 47.619 0.55 0.00 36.85 2.57
1171 1175 2.058057 CTGCAACATTTTACAACGGGC 58.942 47.619 0.00 0.00 0.00 6.13
1215 1219 3.307691 CCCACTTTTCTGTATCAGCTCCA 60.308 47.826 0.00 0.00 0.00 3.86
1338 1343 8.364894 TCACAGAAAGCAGTAAGTTCACTATAA 58.635 33.333 0.00 0.00 0.00 0.98
1369 1375 1.665916 GACAGCTGACGCAGAAGCA 60.666 57.895 23.35 0.00 41.66 3.91
1478 1484 2.919096 AAGTAAGCAGGGGTGGGGC 61.919 63.158 0.00 0.00 0.00 5.80
1489 1495 5.922544 ACACTTCAATTTCATGCAAGTAAGC 59.077 36.000 0.00 0.00 0.00 3.09
1500 1506 4.639755 TCAGCACTGAACACTTCAATTTCA 59.360 37.500 0.00 0.00 39.58 2.69
1567 1574 1.338105 GGATGCCCTTTTCTTGCAACC 60.338 52.381 0.00 0.00 40.11 3.77
1727 1734 0.588252 TGAGAAGCTTCTTTGCGTGC 59.412 50.000 29.02 15.14 37.73 5.34
1751 1758 4.641541 CCAGGTTTGAGCAATGATGATACA 59.358 41.667 0.00 0.00 0.00 2.29
1923 1934 2.566913 TGCCGTTAAGCTCACAAAGAA 58.433 42.857 0.00 0.00 0.00 2.52
2094 2105 6.505272 AGATAGCAAACCTATTCAGACGTAC 58.495 40.000 0.00 0.00 36.88 3.67
2100 2111 6.352516 ACCTCAAGATAGCAAACCTATTCAG 58.647 40.000 0.00 0.00 36.88 3.02
2101 2112 6.313519 ACCTCAAGATAGCAAACCTATTCA 57.686 37.500 0.00 0.00 36.88 2.57
2105 2116 5.338381 CCTCAACCTCAAGATAGCAAACCTA 60.338 44.000 0.00 0.00 0.00 3.08
2112 2123 2.698855 TGCCTCAACCTCAAGATAGC 57.301 50.000 0.00 0.00 0.00 2.97
2128 2139 2.168106 TGCACCATTTGGATGTAATGCC 59.832 45.455 3.01 0.00 35.49 4.40
2220 2231 1.742308 TAAGGCTGGGAAAGTGGACT 58.258 50.000 0.00 0.00 0.00 3.85
2347 2358 1.211457 CAGCCTCCCTTGCTAATCTGT 59.789 52.381 0.00 0.00 36.81 3.41
2396 2407 6.428159 ACCTGTTGTCATCATAAAACTCAGTC 59.572 38.462 0.00 0.00 0.00 3.51
2511 2522 7.287061 TCTGTGGAAAAGAGGAGACAAAATTA 58.713 34.615 0.00 0.00 0.00 1.40
2518 2529 5.066593 ACATTTCTGTGGAAAAGAGGAGAC 58.933 41.667 0.00 0.00 43.51 3.36
2519 2530 5.310409 ACATTTCTGTGGAAAAGAGGAGA 57.690 39.130 0.00 0.00 43.51 3.71
2554 2566 3.884895 TGCCCACCATTCATTAGTGTAG 58.115 45.455 0.00 0.00 0.00 2.74
2555 2567 4.518278 ATGCCCACCATTCATTAGTGTA 57.482 40.909 0.00 0.00 0.00 2.90
2556 2568 2.897271 TGCCCACCATTCATTAGTGT 57.103 45.000 0.00 0.00 0.00 3.55
2557 2569 5.182570 CAGATATGCCCACCATTCATTAGTG 59.817 44.000 0.00 0.00 35.34 2.74
2573 2585 8.416329 AGAACCAAAATAAACCATCAGATATGC 58.584 33.333 0.00 0.00 0.00 3.14
2705 2717 2.493278 CCAATGCAGGAAAAGGGTACAG 59.507 50.000 0.00 0.00 0.00 2.74
2830 2842 2.567169 TCATCTGGGTCAGGTGTTACAG 59.433 50.000 7.88 0.00 42.61 2.74
2911 2923 8.801882 TGTTTCAATCAGGGGTTAACTAATAG 57.198 34.615 5.42 0.00 0.00 1.73
2993 3005 2.224402 GGGTCTATTGGCATCACCTCTC 60.224 54.545 0.00 0.00 40.22 3.20
3071 3083 8.580720 GCCTATATCTACATCTGAGTTTTCTGA 58.419 37.037 0.00 0.00 36.00 3.27
3079 3092 5.128499 CCCCAAGCCTATATCTACATCTGAG 59.872 48.000 0.00 0.00 0.00 3.35
3096 3109 0.817654 GAGCACAATTACCCCCAAGC 59.182 55.000 0.00 0.00 0.00 4.01
3100 3113 0.106669 GAGGGAGCACAATTACCCCC 60.107 60.000 0.00 0.00 42.97 5.40
3217 3230 0.675083 CAAACTTGCATCAGCCACCA 59.325 50.000 0.00 0.00 41.13 4.17
3223 3243 2.028839 TGAATGCCCAAACTTGCATCAG 60.029 45.455 0.00 0.00 46.97 2.90
3345 3366 3.720949 TGTACCTCTACACACACACAC 57.279 47.619 0.00 0.00 0.00 3.82
3388 3409 5.058490 CCACAAAATTCTGAAAAGCCATGT 58.942 37.500 0.00 0.00 0.00 3.21
3482 3576 1.362717 GCATCCATGTCATGCTGCC 59.637 57.895 20.04 8.65 42.95 4.85
3490 3584 1.135689 GTTTGTCCGTGCATCCATGTC 60.136 52.381 0.00 0.00 0.00 3.06
3509 3604 4.956700 TCAGCTGGTATAACTCTTGCTAGT 59.043 41.667 15.13 0.00 0.00 2.57
3540 3635 6.569226 GCAACAGCATTATCATATTCCCACTC 60.569 42.308 0.00 0.00 0.00 3.51
3610 3735 2.092103 TCGCCCTAGTTTAATTGGCCAT 60.092 45.455 6.09 0.00 38.92 4.40
3612 3737 1.674441 GTCGCCCTAGTTTAATTGGCC 59.326 52.381 0.00 0.00 38.92 5.36
3623 3748 0.317938 GACATGTAGCGTCGCCCTAG 60.318 60.000 14.86 3.14 0.00 3.02
3643 3768 3.574396 TGTTTTCAATTAATCCACCGGCA 59.426 39.130 0.00 0.00 0.00 5.69
3644 3769 4.181309 TGTTTTCAATTAATCCACCGGC 57.819 40.909 0.00 0.00 0.00 6.13
3663 3788 3.537874 GTAGGAGGCGGCGGATGT 61.538 66.667 9.78 0.00 0.00 3.06
3664 3789 4.647615 CGTAGGAGGCGGCGGATG 62.648 72.222 9.78 0.00 0.00 3.51
3668 3793 3.927163 AACAACGTAGGAGGCGGCG 62.927 63.158 0.51 0.51 0.00 6.46
3669 3794 2.047560 AACAACGTAGGAGGCGGC 60.048 61.111 0.00 0.00 0.00 6.53
3670 3795 1.740296 CCAACAACGTAGGAGGCGG 60.740 63.158 0.00 0.00 0.00 6.13
3671 3796 0.108329 ATCCAACAACGTAGGAGGCG 60.108 55.000 0.00 0.00 34.40 5.52
3672 3797 1.369625 CATCCAACAACGTAGGAGGC 58.630 55.000 0.00 0.00 34.40 4.70
3673 3798 1.553248 TCCATCCAACAACGTAGGAGG 59.447 52.381 0.00 0.00 34.40 4.30
3674 3799 2.893637 CTCCATCCAACAACGTAGGAG 58.106 52.381 0.00 0.00 34.40 3.69
3675 3800 1.066430 GCTCCATCCAACAACGTAGGA 60.066 52.381 0.00 0.00 35.59 2.94
3676 3801 1.369625 GCTCCATCCAACAACGTAGG 58.630 55.000 0.00 0.00 0.00 3.18
3677 3802 1.338674 TGGCTCCATCCAACAACGTAG 60.339 52.381 0.00 0.00 32.18 3.51
3678 3803 0.687920 TGGCTCCATCCAACAACGTA 59.312 50.000 0.00 0.00 32.18 3.57
3679 3804 0.889186 GTGGCTCCATCCAACAACGT 60.889 55.000 0.00 0.00 37.96 3.99
3680 3805 0.888736 TGTGGCTCCATCCAACAACG 60.889 55.000 0.00 0.00 37.96 4.10
3681 3806 1.327303 TTGTGGCTCCATCCAACAAC 58.673 50.000 0.00 0.00 37.96 3.32
3682 3807 2.079170 TTTGTGGCTCCATCCAACAA 57.921 45.000 0.00 0.00 37.96 2.83
3683 3808 2.307496 ATTTGTGGCTCCATCCAACA 57.693 45.000 0.00 0.00 37.96 3.33
3684 3809 3.356290 ACTATTTGTGGCTCCATCCAAC 58.644 45.455 0.00 0.00 37.96 3.77
3685 3810 3.010027 TGACTATTTGTGGCTCCATCCAA 59.990 43.478 0.00 0.00 37.96 3.53
3686 3811 2.575735 TGACTATTTGTGGCTCCATCCA 59.424 45.455 0.00 0.00 0.00 3.41
3687 3812 3.281727 TGACTATTTGTGGCTCCATCC 57.718 47.619 0.00 0.00 0.00 3.51
3688 3813 3.496130 CGATGACTATTTGTGGCTCCATC 59.504 47.826 0.00 0.00 0.00 3.51
3689 3814 3.470709 CGATGACTATTTGTGGCTCCAT 58.529 45.455 0.00 0.00 0.00 3.41
3690 3815 2.419990 CCGATGACTATTTGTGGCTCCA 60.420 50.000 0.00 0.00 0.00 3.86
3691 3816 2.158957 TCCGATGACTATTTGTGGCTCC 60.159 50.000 0.00 0.00 0.00 4.70
3692 3817 3.179443 TCCGATGACTATTTGTGGCTC 57.821 47.619 0.00 0.00 0.00 4.70
3693 3818 3.389329 AGATCCGATGACTATTTGTGGCT 59.611 43.478 0.00 0.00 0.00 4.75
3694 3819 3.733337 AGATCCGATGACTATTTGTGGC 58.267 45.455 0.00 0.00 0.00 5.01
3695 3820 4.310769 GGAGATCCGATGACTATTTGTGG 58.689 47.826 0.00 0.00 0.00 4.17
3696 3821 4.310769 GGGAGATCCGATGACTATTTGTG 58.689 47.826 0.00 0.00 36.71 3.33
3697 3822 3.325135 GGGGAGATCCGATGACTATTTGT 59.675 47.826 0.00 0.00 36.71 2.83
3698 3823 3.307059 GGGGGAGATCCGATGACTATTTG 60.307 52.174 0.00 0.00 36.71 2.32
3699 3824 2.907042 GGGGGAGATCCGATGACTATTT 59.093 50.000 0.00 0.00 36.71 1.40
3700 3825 2.158158 TGGGGGAGATCCGATGACTATT 60.158 50.000 0.00 0.00 36.71 1.73
3701 3826 1.433199 TGGGGGAGATCCGATGACTAT 59.567 52.381 0.00 0.00 36.71 2.12
3702 3827 0.857675 TGGGGGAGATCCGATGACTA 59.142 55.000 0.00 0.00 36.71 2.59
3703 3828 0.031111 TTGGGGGAGATCCGATGACT 60.031 55.000 0.00 0.00 36.71 3.41
3704 3829 1.059913 ATTGGGGGAGATCCGATGAC 58.940 55.000 0.00 0.00 36.71 3.06
3705 3830 1.059098 CATTGGGGGAGATCCGATGA 58.941 55.000 4.73 0.00 44.95 2.92
3706 3831 1.059098 TCATTGGGGGAGATCCGATG 58.941 55.000 0.00 0.00 44.01 3.84
3707 3832 1.819753 TTCATTGGGGGAGATCCGAT 58.180 50.000 0.00 0.00 36.71 4.18
3708 3833 1.590591 TTTCATTGGGGGAGATCCGA 58.409 50.000 0.00 0.00 36.71 4.55
3709 3834 2.233271 CATTTCATTGGGGGAGATCCG 58.767 52.381 0.00 0.00 36.71 4.18
3710 3835 1.966354 GCATTTCATTGGGGGAGATCC 59.034 52.381 0.00 0.00 0.00 3.36
3711 3836 1.610522 CGCATTTCATTGGGGGAGATC 59.389 52.381 0.00 0.00 0.00 2.75
3712 3837 1.063717 ACGCATTTCATTGGGGGAGAT 60.064 47.619 0.00 0.00 34.11 2.75
3713 3838 0.331278 ACGCATTTCATTGGGGGAGA 59.669 50.000 0.00 0.00 34.11 3.71
3714 3839 0.740737 GACGCATTTCATTGGGGGAG 59.259 55.000 0.00 0.00 34.11 4.30
3715 3840 1.029408 CGACGCATTTCATTGGGGGA 61.029 55.000 0.00 0.00 34.11 4.81
3716 3841 1.312371 ACGACGCATTTCATTGGGGG 61.312 55.000 0.00 0.00 34.11 5.40
3717 3842 0.098728 GACGACGCATTTCATTGGGG 59.901 55.000 0.00 0.00 34.11 4.96
3718 3843 0.801872 TGACGACGCATTTCATTGGG 59.198 50.000 0.00 0.00 35.79 4.12
3719 3844 2.610219 TTGACGACGCATTTCATTGG 57.390 45.000 0.00 0.00 0.00 3.16
3720 3845 3.241426 GCAATTGACGACGCATTTCATTG 60.241 43.478 10.34 3.00 0.00 2.82
3721 3846 2.916716 GCAATTGACGACGCATTTCATT 59.083 40.909 10.34 0.00 0.00 2.57
3722 3847 2.095314 TGCAATTGACGACGCATTTCAT 60.095 40.909 10.34 0.00 0.00 2.57
3723 3848 1.265365 TGCAATTGACGACGCATTTCA 59.735 42.857 10.34 0.00 0.00 2.69
3724 3849 1.962412 TGCAATTGACGACGCATTTC 58.038 45.000 10.34 0.00 0.00 2.17
3725 3850 2.050691 GTTGCAATTGACGACGCATTT 58.949 42.857 10.34 0.00 33.71 2.32
3726 3851 1.001924 TGTTGCAATTGACGACGCATT 60.002 42.857 10.34 0.00 33.71 3.56
3727 3852 0.590682 TGTTGCAATTGACGACGCAT 59.409 45.000 10.34 0.00 33.71 4.73
3728 3853 0.378610 TTGTTGCAATTGACGACGCA 59.621 45.000 10.34 0.00 0.00 5.24
3729 3854 1.044725 CTTGTTGCAATTGACGACGC 58.955 50.000 10.34 0.00 0.00 5.19
3730 3855 1.002900 ACCTTGTTGCAATTGACGACG 60.003 47.619 10.34 0.00 0.00 5.12
3731 3856 2.774439 ACCTTGTTGCAATTGACGAC 57.226 45.000 10.34 10.92 0.00 4.34
3732 3857 3.734463 TCTACCTTGTTGCAATTGACGA 58.266 40.909 10.34 0.00 0.00 4.20
3733 3858 4.083324 ACATCTACCTTGTTGCAATTGACG 60.083 41.667 10.34 0.00 0.00 4.35
3734 3859 5.376854 ACATCTACCTTGTTGCAATTGAC 57.623 39.130 10.34 0.00 0.00 3.18
3761 3886 8.192774 ACCTTGTTGCAATTGACATTATCTATG 58.807 33.333 10.34 0.00 40.26 2.23
3763 3888 7.701539 ACCTTGTTGCAATTGACATTATCTA 57.298 32.000 10.34 0.00 0.00 1.98
3764 3889 6.594788 ACCTTGTTGCAATTGACATTATCT 57.405 33.333 10.34 0.00 0.00 1.98
3765 3890 7.761409 TCTACCTTGTTGCAATTGACATTATC 58.239 34.615 10.34 0.00 0.00 1.75
3766 3891 7.701539 TCTACCTTGTTGCAATTGACATTAT 57.298 32.000 10.34 0.00 0.00 1.28
3767 3892 7.176515 ACATCTACCTTGTTGCAATTGACATTA 59.823 33.333 10.34 0.00 0.00 1.90
3768 3893 6.015180 ACATCTACCTTGTTGCAATTGACATT 60.015 34.615 10.34 0.00 0.00 2.71
3769 3894 5.477984 ACATCTACCTTGTTGCAATTGACAT 59.522 36.000 10.34 0.00 0.00 3.06
3770 3895 4.826733 ACATCTACCTTGTTGCAATTGACA 59.173 37.500 10.34 2.39 0.00 3.58
3771 3896 5.376854 ACATCTACCTTGTTGCAATTGAC 57.623 39.130 10.34 0.00 0.00 3.18
3772 3897 5.048083 GGAACATCTACCTTGTTGCAATTGA 60.048 40.000 10.34 0.00 42.77 2.57
3777 3902 3.434310 TGTGGAACATCTACCTTGTTGCA 60.434 43.478 6.65 6.65 45.67 4.08
3805 3978 0.899720 TAAAGTCCTCCCGCGACATT 59.100 50.000 8.23 0.00 32.41 2.71
3809 3982 1.537814 TTGCTAAAGTCCTCCCGCGA 61.538 55.000 8.23 0.00 0.00 5.87
3810 3983 1.079405 TTGCTAAAGTCCTCCCGCG 60.079 57.895 0.00 0.00 0.00 6.46
3819 3992 4.367039 ACACCACCTATGTTGCTAAAGT 57.633 40.909 0.00 0.00 0.00 2.66
3829 4002 4.320608 AAAAACTGCAACACCACCTATG 57.679 40.909 0.00 0.00 0.00 2.23
3854 4027 1.001815 TGCTGCAAAAACTACGAAGGC 60.002 47.619 0.00 0.00 0.00 4.35
3860 4035 5.163854 ACGTCATCTATGCTGCAAAAACTAC 60.164 40.000 6.36 1.00 0.00 2.73
3872 4047 0.529773 TCCCGCAACGTCATCTATGC 60.530 55.000 0.00 0.00 35.49 3.14
3882 4057 1.574428 CAAAAGTCCTCCCGCAACG 59.426 57.895 0.00 0.00 0.00 4.10
3926 4101 0.110867 CAGACGACATCGCGCAAAAA 60.111 50.000 8.75 0.00 44.43 1.94
3930 4105 2.804931 CACAGACGACATCGCGCA 60.805 61.111 8.75 0.00 44.43 6.09
3931 4106 3.545481 CCACAGACGACATCGCGC 61.545 66.667 0.00 0.00 44.43 6.86
3933 4108 1.372997 ACACCACAGACGACATCGC 60.373 57.895 0.14 0.00 44.43 4.58
3934 4109 0.039527 TCACACCACAGACGACATCG 60.040 55.000 0.00 0.00 46.33 3.84
3935 4110 2.148916 TTCACACCACAGACGACATC 57.851 50.000 0.00 0.00 0.00 3.06
3937 4112 1.601914 CGATTCACACCACAGACGACA 60.602 52.381 0.00 0.00 0.00 4.35
3938 4113 1.060713 CGATTCACACCACAGACGAC 58.939 55.000 0.00 0.00 0.00 4.34
3939 4114 0.955905 TCGATTCACACCACAGACGA 59.044 50.000 0.00 0.00 0.00 4.20
3940 4115 1.068541 TCTCGATTCACACCACAGACG 60.069 52.381 0.00 0.00 0.00 4.18
3941 4116 2.724977 TCTCGATTCACACCACAGAC 57.275 50.000 0.00 0.00 0.00 3.51
3959 4141 6.618811 ACATCATCTCTGTTGCAGAAATTTC 58.381 36.000 10.33 10.33 40.18 2.17
3988 4170 2.159310 CCTTGTTGCAAAAGTCGTTCCA 60.159 45.455 0.00 0.00 0.00 3.53
3993 4175 0.597377 GGGCCTTGTTGCAAAAGTCG 60.597 55.000 0.00 0.00 0.00 4.18
4025 4207 3.364964 CCGGCCGATGATGCTTTTTATAC 60.365 47.826 30.73 0.00 0.00 1.47
4026 4208 2.811431 CCGGCCGATGATGCTTTTTATA 59.189 45.455 30.73 0.00 0.00 0.98
4027 4209 1.608590 CCGGCCGATGATGCTTTTTAT 59.391 47.619 30.73 0.00 0.00 1.40
4028 4210 1.021202 CCGGCCGATGATGCTTTTTA 58.979 50.000 30.73 0.00 0.00 1.52
4043 4227 3.459378 TATTCGTCGTCGCTCCGGC 62.459 63.158 0.00 0.00 36.96 6.13
4045 4229 2.004489 GCTATTCGTCGTCGCTCCG 61.004 63.158 0.00 0.00 36.96 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.