Multiple sequence alignment - TraesCS2D01G362800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G362800 chr2D 100.000 2170 0 0 1 2170 468808161 468810330 0.000000e+00 4008.0
1 TraesCS2D01G362800 chr2D 97.552 286 7 0 1 286 320699237 320699522 7.920000e-135 490.0
2 TraesCS2D01G362800 chr2D 98.214 280 5 0 1 280 445256867 445257146 7.920000e-135 490.0
3 TraesCS2D01G362800 chr2D 98.214 280 5 0 1 280 613149691 613149970 7.920000e-135 490.0
4 TraesCS2D01G362800 chr2D 100.000 151 0 0 2315 2465 468810475 468810625 1.870000e-71 279.0
5 TraesCS2D01G362800 chr2A 93.755 1217 34 13 812 2009 608774815 608776008 0.000000e+00 1788.0
6 TraesCS2D01G362800 chr2A 90.476 378 29 7 368 741 608769238 608769612 2.200000e-135 492.0
7 TraesCS2D01G362800 chr2A 92.763 152 10 1 2315 2465 608777844 608777995 4.130000e-53 219.0
8 TraesCS2D01G362800 chr2A 88.415 164 12 2 2007 2170 608777627 608777783 9.000000e-45 191.0
9 TraesCS2D01G362800 chr2B 89.695 1378 72 33 368 1693 547040103 547041462 0.000000e+00 1694.0
10 TraesCS2D01G362800 chr2B 92.481 133 7 2 2336 2465 547041749 547041881 1.160000e-43 187.0
11 TraesCS2D01G362800 chr2B 97.101 69 1 1 2102 2170 547041469 547041536 5.570000e-22 115.0
12 TraesCS2D01G362800 chr2B 92.208 77 6 0 281 357 547040045 547040121 2.590000e-20 110.0
13 TraesCS2D01G362800 chr6D 98.936 282 3 0 1 282 125737229 125736948 2.830000e-139 505.0
14 TraesCS2D01G362800 chr4D 99.281 278 2 0 1 278 137203012 137202735 1.020000e-138 503.0
15 TraesCS2D01G362800 chr3D 98.571 280 4 0 1 280 513865999 513865720 1.700000e-136 496.0
16 TraesCS2D01G362800 chr3D 98.214 280 5 0 1 280 497066827 497066548 7.920000e-135 490.0
17 TraesCS2D01G362800 chr7D 98.208 279 5 0 1 279 2282335 2282057 2.850000e-134 488.0
18 TraesCS2D01G362800 chr5D 98.208 279 4 1 1 279 75804960 75804683 1.020000e-133 486.0
19 TraesCS2D01G362800 chr5D 85.714 63 6 3 372 432 551411878 551411939 2.050000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G362800 chr2D 468808161 468810625 2464 False 2143.500000 4008 100.000000 1 2465 2 chr2D.!!$F4 2464
1 TraesCS2D01G362800 chr2A 608774815 608777995 3180 False 732.666667 1788 91.644333 812 2465 3 chr2A.!!$F2 1653
2 TraesCS2D01G362800 chr2B 547040045 547041881 1836 False 526.500000 1694 92.871250 281 2465 4 chr2B.!!$F1 2184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.106015 AACTCTTGGCTTGGGTTGCT 60.106 50.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 3739 0.248012 TAGCGCTCGTGGATTTTGGA 59.752 50.0 16.34 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.566426 AAATAGCAGAACCTTCAGAGCT 57.434 40.909 0.00 0.00 36.52 4.09
22 23 3.540314 ATAGCAGAACCTTCAGAGCTG 57.460 47.619 0.00 0.00 35.08 4.24
23 24 1.346062 AGCAGAACCTTCAGAGCTGA 58.654 50.000 0.00 0.00 37.91 4.26
24 25 1.275856 AGCAGAACCTTCAGAGCTGAG 59.724 52.381 0.00 0.00 41.13 3.35
25 26 1.274728 GCAGAACCTTCAGAGCTGAGA 59.725 52.381 0.00 0.00 41.13 3.27
26 27 2.674747 GCAGAACCTTCAGAGCTGAGAG 60.675 54.545 0.00 2.43 41.13 3.20
27 28 2.824936 CAGAACCTTCAGAGCTGAGAGA 59.175 50.000 0.00 0.00 41.13 3.10
28 29 3.091545 AGAACCTTCAGAGCTGAGAGAG 58.908 50.000 0.00 0.00 41.13 3.20
41 42 3.510719 CTGAGAGAGCTACTTTCAGTGC 58.489 50.000 17.87 0.00 46.30 4.40
42 43 3.161067 TGAGAGAGCTACTTTCAGTGCT 58.839 45.455 0.00 0.00 35.31 4.40
43 44 3.576118 TGAGAGAGCTACTTTCAGTGCTT 59.424 43.478 0.00 0.00 35.31 3.91
44 45 3.924144 AGAGAGCTACTTTCAGTGCTTG 58.076 45.455 0.00 0.00 34.43 4.01
45 46 2.999355 GAGAGCTACTTTCAGTGCTTGG 59.001 50.000 0.00 0.00 34.43 3.61
46 47 2.634940 AGAGCTACTTTCAGTGCTTGGA 59.365 45.455 0.00 0.00 34.43 3.53
47 48 3.071602 AGAGCTACTTTCAGTGCTTGGAA 59.928 43.478 0.00 0.00 34.43 3.53
48 49 3.406764 AGCTACTTTCAGTGCTTGGAAG 58.593 45.455 7.91 7.91 46.29 3.46
54 55 5.499139 CTTTCAGTGCTTGGAAGTGTAAA 57.501 39.130 2.65 0.00 37.58 2.01
55 56 6.076981 CTTTCAGTGCTTGGAAGTGTAAAT 57.923 37.500 2.65 0.00 37.58 1.40
56 57 6.463995 TTTCAGTGCTTGGAAGTGTAAATT 57.536 33.333 0.00 0.00 0.00 1.82
57 58 5.689383 TCAGTGCTTGGAAGTGTAAATTC 57.311 39.130 0.00 0.00 40.82 2.17
58 59 5.129634 TCAGTGCTTGGAAGTGTAAATTCA 58.870 37.500 0.00 0.00 43.89 2.57
59 60 5.769662 TCAGTGCTTGGAAGTGTAAATTCAT 59.230 36.000 0.00 0.00 43.89 2.57
60 61 6.072508 TCAGTGCTTGGAAGTGTAAATTCATC 60.073 38.462 0.00 0.00 43.89 2.92
61 62 5.183904 AGTGCTTGGAAGTGTAAATTCATCC 59.816 40.000 0.00 0.00 43.89 3.51
62 63 5.048083 GTGCTTGGAAGTGTAAATTCATCCA 60.048 40.000 0.00 0.00 43.89 3.41
63 64 5.716228 TGCTTGGAAGTGTAAATTCATCCAT 59.284 36.000 0.00 0.00 43.89 3.41
64 65 6.038356 GCTTGGAAGTGTAAATTCATCCATG 58.962 40.000 0.00 0.00 43.89 3.66
65 66 6.127647 GCTTGGAAGTGTAAATTCATCCATGA 60.128 38.462 9.01 0.00 43.89 3.07
66 67 7.417116 GCTTGGAAGTGTAAATTCATCCATGAT 60.417 37.037 9.01 0.00 43.89 2.45
67 68 9.123902 CTTGGAAGTGTAAATTCATCCATGATA 57.876 33.333 0.00 0.00 43.89 2.15
68 69 9.645128 TTGGAAGTGTAAATTCATCCATGATAT 57.355 29.630 0.00 0.00 43.89 1.63
69 70 9.288576 TGGAAGTGTAAATTCATCCATGATATC 57.711 33.333 0.00 0.00 43.89 1.63
70 71 9.512588 GGAAGTGTAAATTCATCCATGATATCT 57.487 33.333 3.98 0.00 43.89 1.98
76 77 9.837525 GTAAATTCATCCATGATATCTCTTTGC 57.162 33.333 3.98 0.00 36.56 3.68
77 78 8.707796 AAATTCATCCATGATATCTCTTTGCT 57.292 30.769 3.98 0.00 36.56 3.91
78 79 8.707796 AATTCATCCATGATATCTCTTTGCTT 57.292 30.769 3.98 0.00 36.56 3.91
79 80 7.506328 TTCATCCATGATATCTCTTTGCTTG 57.494 36.000 3.98 0.00 36.56 4.01
80 81 5.472478 TCATCCATGATATCTCTTTGCTTGC 59.528 40.000 3.98 0.00 0.00 4.01
81 82 5.045012 TCCATGATATCTCTTTGCTTGCT 57.955 39.130 3.98 0.00 0.00 3.91
82 83 5.061853 TCCATGATATCTCTTTGCTTGCTC 58.938 41.667 3.98 0.00 0.00 4.26
83 84 4.820173 CCATGATATCTCTTTGCTTGCTCA 59.180 41.667 3.98 0.00 0.00 4.26
84 85 5.473846 CCATGATATCTCTTTGCTTGCTCAT 59.526 40.000 3.98 0.00 0.00 2.90
85 86 6.653740 CCATGATATCTCTTTGCTTGCTCATA 59.346 38.462 3.98 0.00 0.00 2.15
86 87 7.148390 CCATGATATCTCTTTGCTTGCTCATAG 60.148 40.741 3.98 0.00 0.00 2.23
87 88 6.228995 TGATATCTCTTTGCTTGCTCATAGG 58.771 40.000 3.98 0.00 0.00 2.57
88 89 3.272574 TCTCTTTGCTTGCTCATAGGG 57.727 47.619 0.00 0.00 0.00 3.53
89 90 2.573462 TCTCTTTGCTTGCTCATAGGGT 59.427 45.455 0.00 0.00 0.00 4.34
90 91 2.681848 CTCTTTGCTTGCTCATAGGGTG 59.318 50.000 0.00 0.00 0.00 4.61
91 92 2.305635 TCTTTGCTTGCTCATAGGGTGA 59.694 45.455 0.00 0.00 35.05 4.02
92 93 2.877097 TTGCTTGCTCATAGGGTGAA 57.123 45.000 0.00 0.00 36.14 3.18
93 94 2.408271 TGCTTGCTCATAGGGTGAAG 57.592 50.000 0.00 0.00 36.14 3.02
94 95 1.065199 TGCTTGCTCATAGGGTGAAGG 60.065 52.381 0.00 0.00 36.14 3.46
95 96 1.210478 GCTTGCTCATAGGGTGAAGGA 59.790 52.381 0.00 0.00 36.14 3.36
96 97 2.158696 GCTTGCTCATAGGGTGAAGGAT 60.159 50.000 0.00 0.00 36.14 3.24
97 98 3.686691 GCTTGCTCATAGGGTGAAGGATT 60.687 47.826 0.00 0.00 36.14 3.01
98 99 3.565764 TGCTCATAGGGTGAAGGATTG 57.434 47.619 0.00 0.00 36.14 2.67
99 100 2.846206 TGCTCATAGGGTGAAGGATTGT 59.154 45.455 0.00 0.00 36.14 2.71
100 101 4.037222 TGCTCATAGGGTGAAGGATTGTA 58.963 43.478 0.00 0.00 36.14 2.41
101 102 4.141711 TGCTCATAGGGTGAAGGATTGTAC 60.142 45.833 0.00 0.00 36.14 2.90
102 103 4.141711 GCTCATAGGGTGAAGGATTGTACA 60.142 45.833 0.00 0.00 36.14 2.90
103 104 5.629133 GCTCATAGGGTGAAGGATTGTACAA 60.629 44.000 11.41 11.41 36.14 2.41
104 105 6.381498 TCATAGGGTGAAGGATTGTACAAA 57.619 37.500 13.23 0.00 32.78 2.83
105 106 6.785076 TCATAGGGTGAAGGATTGTACAAAA 58.215 36.000 13.23 0.00 32.78 2.44
106 107 6.657541 TCATAGGGTGAAGGATTGTACAAAAC 59.342 38.462 13.23 8.51 32.78 2.43
107 108 4.149598 AGGGTGAAGGATTGTACAAAACC 58.850 43.478 13.23 17.79 0.00 3.27
108 109 3.892588 GGGTGAAGGATTGTACAAAACCA 59.107 43.478 26.03 13.45 0.00 3.67
109 110 4.342665 GGGTGAAGGATTGTACAAAACCAA 59.657 41.667 26.03 14.69 0.00 3.67
110 111 5.163395 GGGTGAAGGATTGTACAAAACCAAA 60.163 40.000 26.03 14.44 0.00 3.28
111 112 6.342111 GGTGAAGGATTGTACAAAACCAAAA 58.658 36.000 26.03 14.20 0.00 2.44
112 113 6.256975 GGTGAAGGATTGTACAAAACCAAAAC 59.743 38.462 26.03 20.76 0.00 2.43
113 114 7.039270 GTGAAGGATTGTACAAAACCAAAACT 58.961 34.615 26.03 10.90 0.00 2.66
114 115 7.222031 GTGAAGGATTGTACAAAACCAAAACTC 59.778 37.037 26.03 17.46 0.00 3.01
115 116 7.123547 TGAAGGATTGTACAAAACCAAAACTCT 59.876 33.333 26.03 9.88 0.00 3.24
116 117 7.418337 AGGATTGTACAAAACCAAAACTCTT 57.582 32.000 26.03 7.96 0.00 2.85
117 118 7.264947 AGGATTGTACAAAACCAAAACTCTTG 58.735 34.615 26.03 0.00 0.00 3.02
118 119 6.478673 GGATTGTACAAAACCAAAACTCTTGG 59.521 38.462 22.11 1.93 44.91 3.61
119 120 4.749976 TGTACAAAACCAAAACTCTTGGC 58.250 39.130 3.40 0.00 43.23 4.52
120 121 4.464597 TGTACAAAACCAAAACTCTTGGCT 59.535 37.500 3.40 0.00 43.23 4.75
121 122 4.551702 ACAAAACCAAAACTCTTGGCTT 57.448 36.364 3.40 0.00 43.23 4.35
122 123 4.252878 ACAAAACCAAAACTCTTGGCTTG 58.747 39.130 13.44 13.44 43.23 4.01
123 124 3.541996 AAACCAAAACTCTTGGCTTGG 57.458 42.857 3.40 0.00 43.23 3.61
124 125 1.413118 ACCAAAACTCTTGGCTTGGG 58.587 50.000 3.40 0.00 42.23 4.12
125 126 1.342975 ACCAAAACTCTTGGCTTGGGT 60.343 47.619 3.40 0.00 42.23 4.51
126 127 1.762370 CCAAAACTCTTGGCTTGGGTT 59.238 47.619 0.00 0.00 35.65 4.11
127 128 2.483538 CCAAAACTCTTGGCTTGGGTTG 60.484 50.000 0.00 0.00 35.65 3.77
128 129 0.752658 AAACTCTTGGCTTGGGTTGC 59.247 50.000 0.00 0.00 0.00 4.17
129 130 0.106015 AACTCTTGGCTTGGGTTGCT 60.106 50.000 0.00 0.00 0.00 3.91
130 131 0.106015 ACTCTTGGCTTGGGTTGCTT 60.106 50.000 0.00 0.00 0.00 3.91
131 132 0.600057 CTCTTGGCTTGGGTTGCTTC 59.400 55.000 0.00 0.00 0.00 3.86
132 133 0.185901 TCTTGGCTTGGGTTGCTTCT 59.814 50.000 0.00 0.00 0.00 2.85
133 134 1.043022 CTTGGCTTGGGTTGCTTCTT 58.957 50.000 0.00 0.00 0.00 2.52
134 135 1.413812 CTTGGCTTGGGTTGCTTCTTT 59.586 47.619 0.00 0.00 0.00 2.52
135 136 0.752054 TGGCTTGGGTTGCTTCTTTG 59.248 50.000 0.00 0.00 0.00 2.77
136 137 0.752658 GGCTTGGGTTGCTTCTTTGT 59.247 50.000 0.00 0.00 0.00 2.83
137 138 1.138859 GGCTTGGGTTGCTTCTTTGTT 59.861 47.619 0.00 0.00 0.00 2.83
138 139 2.204237 GCTTGGGTTGCTTCTTTGTTG 58.796 47.619 0.00 0.00 0.00 3.33
139 140 2.418609 GCTTGGGTTGCTTCTTTGTTGT 60.419 45.455 0.00 0.00 0.00 3.32
140 141 3.181480 GCTTGGGTTGCTTCTTTGTTGTA 60.181 43.478 0.00 0.00 0.00 2.41
141 142 4.679372 GCTTGGGTTGCTTCTTTGTTGTAA 60.679 41.667 0.00 0.00 0.00 2.41
142 143 5.407407 TTGGGTTGCTTCTTTGTTGTAAA 57.593 34.783 0.00 0.00 0.00 2.01
143 144 5.004922 TGGGTTGCTTCTTTGTTGTAAAG 57.995 39.130 0.00 0.00 0.00 1.85
144 145 3.802139 GGGTTGCTTCTTTGTTGTAAAGC 59.198 43.478 0.00 0.00 43.41 3.51
147 148 4.305989 TGCTTCTTTGTTGTAAAGCAGG 57.694 40.909 4.64 0.00 46.61 4.85
148 149 3.699038 TGCTTCTTTGTTGTAAAGCAGGT 59.301 39.130 4.64 0.00 46.61 4.00
149 150 4.884744 TGCTTCTTTGTTGTAAAGCAGGTA 59.115 37.500 4.64 0.00 46.61 3.08
150 151 5.008613 TGCTTCTTTGTTGTAAAGCAGGTAG 59.991 40.000 4.64 0.00 46.61 3.18
151 152 5.238650 GCTTCTTTGTTGTAAAGCAGGTAGA 59.761 40.000 1.33 0.00 42.80 2.59
152 153 6.566753 GCTTCTTTGTTGTAAAGCAGGTAGAG 60.567 42.308 1.33 0.00 42.80 2.43
153 154 5.925509 TCTTTGTTGTAAAGCAGGTAGAGT 58.074 37.500 0.00 0.00 0.00 3.24
154 155 6.354130 TCTTTGTTGTAAAGCAGGTAGAGTT 58.646 36.000 0.00 0.00 0.00 3.01
155 156 6.260050 TCTTTGTTGTAAAGCAGGTAGAGTTG 59.740 38.462 0.00 0.00 0.00 3.16
156 157 5.031066 TGTTGTAAAGCAGGTAGAGTTGT 57.969 39.130 0.00 0.00 0.00 3.32
157 158 5.433526 TGTTGTAAAGCAGGTAGAGTTGTT 58.566 37.500 0.00 0.00 0.00 2.83
158 159 5.883673 TGTTGTAAAGCAGGTAGAGTTGTTT 59.116 36.000 0.00 0.00 0.00 2.83
159 160 7.049133 TGTTGTAAAGCAGGTAGAGTTGTTTA 58.951 34.615 0.00 0.00 0.00 2.01
160 161 7.225931 TGTTGTAAAGCAGGTAGAGTTGTTTAG 59.774 37.037 0.00 0.00 0.00 1.85
161 162 5.699458 TGTAAAGCAGGTAGAGTTGTTTAGC 59.301 40.000 0.00 0.00 0.00 3.09
162 163 3.336138 AGCAGGTAGAGTTGTTTAGCC 57.664 47.619 0.00 0.00 0.00 3.93
163 164 2.637872 AGCAGGTAGAGTTGTTTAGCCA 59.362 45.455 0.00 0.00 0.00 4.75
164 165 3.264450 AGCAGGTAGAGTTGTTTAGCCAT 59.736 43.478 0.00 0.00 0.00 4.40
165 166 4.469945 AGCAGGTAGAGTTGTTTAGCCATA 59.530 41.667 0.00 0.00 0.00 2.74
166 167 4.811557 GCAGGTAGAGTTGTTTAGCCATAG 59.188 45.833 0.00 0.00 0.00 2.23
167 168 5.360591 CAGGTAGAGTTGTTTAGCCATAGG 58.639 45.833 0.00 0.00 0.00 2.57
168 169 5.030820 AGGTAGAGTTGTTTAGCCATAGGT 58.969 41.667 0.00 0.00 0.00 3.08
169 170 6.097839 CAGGTAGAGTTGTTTAGCCATAGGTA 59.902 42.308 0.00 0.00 0.00 3.08
170 171 6.324254 AGGTAGAGTTGTTTAGCCATAGGTAG 59.676 42.308 0.00 0.00 0.00 3.18
171 172 6.323225 GGTAGAGTTGTTTAGCCATAGGTAGA 59.677 42.308 0.00 0.00 0.00 2.59
172 173 6.223351 AGAGTTGTTTAGCCATAGGTAGAC 57.777 41.667 0.00 0.00 33.02 2.59
173 174 5.958987 AGAGTTGTTTAGCCATAGGTAGACT 59.041 40.000 0.00 0.00 33.45 3.24
174 175 6.097129 AGAGTTGTTTAGCCATAGGTAGACTC 59.903 42.308 0.00 0.00 33.45 3.36
175 176 5.958987 AGTTGTTTAGCCATAGGTAGACTCT 59.041 40.000 0.00 0.00 33.45 3.24
176 177 6.440965 AGTTGTTTAGCCATAGGTAGACTCTT 59.559 38.462 0.00 0.00 33.45 2.85
177 178 6.869206 TGTTTAGCCATAGGTAGACTCTTT 57.131 37.500 0.00 0.00 33.45 2.52
178 179 7.253905 TGTTTAGCCATAGGTAGACTCTTTT 57.746 36.000 0.00 0.00 33.45 2.27
179 180 7.328737 TGTTTAGCCATAGGTAGACTCTTTTC 58.671 38.462 0.00 0.00 33.45 2.29
180 181 6.481434 TTAGCCATAGGTAGACTCTTTTCC 57.519 41.667 0.00 0.00 0.00 3.13
181 182 4.625963 AGCCATAGGTAGACTCTTTTCCT 58.374 43.478 0.00 0.00 0.00 3.36
182 183 5.033522 AGCCATAGGTAGACTCTTTTCCTT 58.966 41.667 0.00 0.00 0.00 3.36
183 184 5.489278 AGCCATAGGTAGACTCTTTTCCTTT 59.511 40.000 0.00 0.00 0.00 3.11
184 185 6.012421 AGCCATAGGTAGACTCTTTTCCTTTT 60.012 38.462 0.00 0.00 0.00 2.27
185 186 6.659668 GCCATAGGTAGACTCTTTTCCTTTTT 59.340 38.462 0.00 0.00 0.00 1.94
186 187 7.148222 GCCATAGGTAGACTCTTTTCCTTTTTC 60.148 40.741 0.00 0.00 0.00 2.29
187 188 7.337184 CCATAGGTAGACTCTTTTCCTTTTTCC 59.663 40.741 0.00 0.00 0.00 3.13
188 189 6.517013 AGGTAGACTCTTTTCCTTTTTCCT 57.483 37.500 0.00 0.00 0.00 3.36
189 190 6.912426 AGGTAGACTCTTTTCCTTTTTCCTT 58.088 36.000 0.00 0.00 0.00 3.36
190 191 6.999272 AGGTAGACTCTTTTCCTTTTTCCTTC 59.001 38.462 0.00 0.00 0.00 3.46
191 192 6.207025 GGTAGACTCTTTTCCTTTTTCCTTCC 59.793 42.308 0.00 0.00 0.00 3.46
192 193 6.019656 AGACTCTTTTCCTTTTTCCTTCCT 57.980 37.500 0.00 0.00 0.00 3.36
193 194 6.436027 AGACTCTTTTCCTTTTTCCTTCCTT 58.564 36.000 0.00 0.00 0.00 3.36
194 195 6.322456 AGACTCTTTTCCTTTTTCCTTCCTTG 59.678 38.462 0.00 0.00 0.00 3.61
195 196 5.958380 ACTCTTTTCCTTTTTCCTTCCTTGT 59.042 36.000 0.00 0.00 0.00 3.16
196 197 7.123383 ACTCTTTTCCTTTTTCCTTCCTTGTA 58.877 34.615 0.00 0.00 0.00 2.41
197 198 7.785028 ACTCTTTTCCTTTTTCCTTCCTTGTAT 59.215 33.333 0.00 0.00 0.00 2.29
198 199 9.297037 CTCTTTTCCTTTTTCCTTCCTTGTATA 57.703 33.333 0.00 0.00 0.00 1.47
199 200 9.297037 TCTTTTCCTTTTTCCTTCCTTGTATAG 57.703 33.333 0.00 0.00 0.00 1.31
200 201 9.078990 CTTTTCCTTTTTCCTTCCTTGTATAGT 57.921 33.333 0.00 0.00 0.00 2.12
201 202 8.631480 TTTCCTTTTTCCTTCCTTGTATAGTC 57.369 34.615 0.00 0.00 0.00 2.59
202 203 7.569599 TCCTTTTTCCTTCCTTGTATAGTCT 57.430 36.000 0.00 0.00 0.00 3.24
203 204 7.394816 TCCTTTTTCCTTCCTTGTATAGTCTG 58.605 38.462 0.00 0.00 0.00 3.51
204 205 7.017254 TCCTTTTTCCTTCCTTGTATAGTCTGT 59.983 37.037 0.00 0.00 0.00 3.41
205 206 8.319146 CCTTTTTCCTTCCTTGTATAGTCTGTA 58.681 37.037 0.00 0.00 0.00 2.74
206 207 9.720769 CTTTTTCCTTCCTTGTATAGTCTGTAA 57.279 33.333 0.00 0.00 0.00 2.41
210 211 9.667107 TTCCTTCCTTGTATAGTCTGTAATTTG 57.333 33.333 0.00 0.00 0.00 2.32
211 212 8.822805 TCCTTCCTTGTATAGTCTGTAATTTGT 58.177 33.333 0.00 0.00 0.00 2.83
212 213 9.449719 CCTTCCTTGTATAGTCTGTAATTTGTT 57.550 33.333 0.00 0.00 0.00 2.83
215 216 9.787435 TCCTTGTATAGTCTGTAATTTGTTTGT 57.213 29.630 0.00 0.00 0.00 2.83
223 224 8.732746 AGTCTGTAATTTGTTTGTACAGTTCT 57.267 30.769 9.26 7.10 43.38 3.01
224 225 8.612619 AGTCTGTAATTTGTTTGTACAGTTCTG 58.387 33.333 9.26 0.00 43.38 3.02
225 226 7.376072 GTCTGTAATTTGTTTGTACAGTTCTGC 59.624 37.037 9.26 0.00 43.38 4.26
226 227 7.282224 TCTGTAATTTGTTTGTACAGTTCTGCT 59.718 33.333 9.26 0.00 43.38 4.24
227 228 7.767261 TGTAATTTGTTTGTACAGTTCTGCTT 58.233 30.769 0.00 0.00 35.28 3.91
228 229 8.247562 TGTAATTTGTTTGTACAGTTCTGCTTT 58.752 29.630 0.00 0.00 35.28 3.51
229 230 7.755582 AATTTGTTTGTACAGTTCTGCTTTC 57.244 32.000 0.00 0.00 35.28 2.62
230 231 6.509418 TTTGTTTGTACAGTTCTGCTTTCT 57.491 33.333 0.00 0.00 35.28 2.52
231 232 6.509418 TTGTTTGTACAGTTCTGCTTTCTT 57.491 33.333 0.00 0.00 35.28 2.52
232 233 6.509418 TGTTTGTACAGTTCTGCTTTCTTT 57.491 33.333 0.00 0.00 0.00 2.52
233 234 7.618502 TGTTTGTACAGTTCTGCTTTCTTTA 57.381 32.000 0.00 0.00 0.00 1.85
234 235 8.046294 TGTTTGTACAGTTCTGCTTTCTTTAA 57.954 30.769 0.00 0.00 0.00 1.52
235 236 8.682710 TGTTTGTACAGTTCTGCTTTCTTTAAT 58.317 29.630 0.00 0.00 0.00 1.40
240 241 9.827411 GTACAGTTCTGCTTTCTTTAATAAAGG 57.173 33.333 12.29 0.00 39.01 3.11
241 242 7.886338 ACAGTTCTGCTTTCTTTAATAAAGGG 58.114 34.615 12.29 5.29 39.01 3.95
242 243 6.808704 CAGTTCTGCTTTCTTTAATAAAGGGC 59.191 38.462 12.29 13.46 39.01 5.19
243 244 6.721668 AGTTCTGCTTTCTTTAATAAAGGGCT 59.278 34.615 12.29 0.00 39.01 5.19
244 245 6.515272 TCTGCTTTCTTTAATAAAGGGCTG 57.485 37.500 12.29 15.38 39.01 4.85
245 246 6.010219 TCTGCTTTCTTTAATAAAGGGCTGT 58.990 36.000 12.29 0.00 39.01 4.40
246 247 6.024552 TGCTTTCTTTAATAAAGGGCTGTG 57.975 37.500 12.29 0.61 39.01 3.66
247 248 5.047377 TGCTTTCTTTAATAAAGGGCTGTGG 60.047 40.000 12.29 0.00 39.01 4.17
248 249 5.624509 GCTTTCTTTAATAAAGGGCTGTGGG 60.625 44.000 12.29 0.00 39.01 4.61
249 250 3.976015 TCTTTAATAAAGGGCTGTGGGG 58.024 45.455 12.29 0.00 39.01 4.96
250 251 2.153034 TTAATAAAGGGCTGTGGGGC 57.847 50.000 0.00 0.00 40.05 5.80
251 252 1.304891 TAATAAAGGGCTGTGGGGCT 58.695 50.000 0.00 0.00 40.65 5.19
252 253 0.413434 AATAAAGGGCTGTGGGGCTT 59.587 50.000 0.00 0.00 40.65 4.35
253 254 0.413434 ATAAAGGGCTGTGGGGCTTT 59.587 50.000 0.00 0.00 41.28 3.51
254 255 0.541764 TAAAGGGCTGTGGGGCTTTG 60.542 55.000 0.00 0.00 39.57 2.77
270 271 5.582689 GGCTTTGCCTCACAGTAAATATT 57.417 39.130 0.73 0.00 46.69 1.28
271 272 5.582550 GGCTTTGCCTCACAGTAAATATTC 58.417 41.667 0.73 0.00 46.69 1.75
272 273 5.125417 GGCTTTGCCTCACAGTAAATATTCA 59.875 40.000 0.73 0.00 46.69 2.57
273 274 6.350110 GGCTTTGCCTCACAGTAAATATTCAA 60.350 38.462 0.73 0.00 46.69 2.69
274 275 7.090173 GCTTTGCCTCACAGTAAATATTCAAA 58.910 34.615 0.00 0.00 0.00 2.69
275 276 7.598493 GCTTTGCCTCACAGTAAATATTCAAAA 59.402 33.333 0.00 0.00 0.00 2.44
276 277 9.474920 CTTTGCCTCACAGTAAATATTCAAAAA 57.525 29.630 0.00 0.00 0.00 1.94
307 308 8.678199 ACTAACTTAATAGCTGAAATTTGAGCC 58.322 33.333 23.60 8.23 38.22 4.70
336 337 2.628657 AGGTAGATCATTCGTAGGCCAC 59.371 50.000 5.01 0.00 0.00 5.01
344 345 0.320374 TTCGTAGGCCACCAGAGTTG 59.680 55.000 5.01 0.00 0.00 3.16
345 346 0.830444 TCGTAGGCCACCAGAGTTGT 60.830 55.000 5.01 0.00 0.00 3.32
346 347 0.389948 CGTAGGCCACCAGAGTTGTC 60.390 60.000 5.01 0.00 0.00 3.18
347 348 0.685097 GTAGGCCACCAGAGTTGTCA 59.315 55.000 5.01 0.00 0.00 3.58
348 349 0.976641 TAGGCCACCAGAGTTGTCAG 59.023 55.000 5.01 0.00 0.00 3.51
349 350 1.056700 AGGCCACCAGAGTTGTCAGT 61.057 55.000 5.01 0.00 0.00 3.41
350 351 0.685097 GGCCACCAGAGTTGTCAGTA 59.315 55.000 0.00 0.00 0.00 2.74
351 352 1.279271 GGCCACCAGAGTTGTCAGTAT 59.721 52.381 0.00 0.00 0.00 2.12
352 353 2.290323 GGCCACCAGAGTTGTCAGTATT 60.290 50.000 0.00 0.00 0.00 1.89
353 354 3.003480 GCCACCAGAGTTGTCAGTATTC 58.997 50.000 0.00 0.00 0.00 1.75
354 355 3.600388 CCACCAGAGTTGTCAGTATTCC 58.400 50.000 0.00 0.00 0.00 3.01
355 356 3.261897 CCACCAGAGTTGTCAGTATTCCT 59.738 47.826 0.00 0.00 0.00 3.36
356 357 4.263068 CCACCAGAGTTGTCAGTATTCCTT 60.263 45.833 0.00 0.00 0.00 3.36
357 358 4.932200 CACCAGAGTTGTCAGTATTCCTTC 59.068 45.833 0.00 0.00 0.00 3.46
358 359 4.020128 ACCAGAGTTGTCAGTATTCCTTCC 60.020 45.833 0.00 0.00 0.00 3.46
359 360 4.223923 CCAGAGTTGTCAGTATTCCTTCCT 59.776 45.833 0.00 0.00 0.00 3.36
360 361 5.280215 CCAGAGTTGTCAGTATTCCTTCCTT 60.280 44.000 0.00 0.00 0.00 3.36
361 362 6.234177 CAGAGTTGTCAGTATTCCTTCCTTT 58.766 40.000 0.00 0.00 0.00 3.11
362 363 6.712547 CAGAGTTGTCAGTATTCCTTCCTTTT 59.287 38.462 0.00 0.00 0.00 2.27
363 364 7.229506 CAGAGTTGTCAGTATTCCTTCCTTTTT 59.770 37.037 0.00 0.00 0.00 1.94
364 365 7.229506 AGAGTTGTCAGTATTCCTTCCTTTTTG 59.770 37.037 0.00 0.00 0.00 2.44
365 366 5.705609 TGTCAGTATTCCTTCCTTTTTGC 57.294 39.130 0.00 0.00 0.00 3.68
366 367 4.215399 TGTCAGTATTCCTTCCTTTTTGCG 59.785 41.667 0.00 0.00 0.00 4.85
367 368 4.454504 GTCAGTATTCCTTCCTTTTTGCGA 59.545 41.667 0.00 0.00 0.00 5.10
368 369 4.695455 TCAGTATTCCTTCCTTTTTGCGAG 59.305 41.667 0.00 0.00 0.00 5.03
369 370 4.695455 CAGTATTCCTTCCTTTTTGCGAGA 59.305 41.667 0.00 0.00 0.00 4.04
370 371 5.355350 CAGTATTCCTTCCTTTTTGCGAGAT 59.645 40.000 0.00 0.00 0.00 2.75
371 372 4.708726 ATTCCTTCCTTTTTGCGAGATG 57.291 40.909 0.00 0.00 0.00 2.90
372 373 3.140325 TCCTTCCTTTTTGCGAGATGT 57.860 42.857 0.00 0.00 0.00 3.06
373 374 3.486383 TCCTTCCTTTTTGCGAGATGTT 58.514 40.909 0.00 0.00 0.00 2.71
414 415 5.003804 AGGTGACAATGGTTCATAAGACAC 58.996 41.667 0.00 0.00 30.71 3.67
415 416 4.759693 GGTGACAATGGTTCATAAGACACA 59.240 41.667 0.00 0.00 31.91 3.72
433 434 5.932303 AGACACACGTAAAGCAATATCTTGT 59.068 36.000 0.00 0.00 34.69 3.16
515 516 8.547967 AAATGACATAGACATTTTCTGTACGT 57.452 30.769 0.00 0.00 42.73 3.57
553 554 5.643339 AAAATTGCGCGAACACATTTTTA 57.357 30.435 12.10 0.00 31.29 1.52
554 555 4.623122 AATTGCGCGAACACATTTTTAC 57.377 36.364 12.10 0.00 0.00 2.01
555 556 2.757686 TGCGCGAACACATTTTTACA 57.242 40.000 12.10 0.00 0.00 2.41
556 557 3.275400 TGCGCGAACACATTTTTACAT 57.725 38.095 12.10 0.00 0.00 2.29
558 559 3.666334 TGCGCGAACACATTTTTACATTC 59.334 39.130 12.10 0.00 0.00 2.67
559 560 3.666334 GCGCGAACACATTTTTACATTCA 59.334 39.130 12.10 0.00 0.00 2.57
560 561 4.323336 GCGCGAACACATTTTTACATTCAT 59.677 37.500 12.10 0.00 0.00 2.57
561 562 5.164100 GCGCGAACACATTTTTACATTCATT 60.164 36.000 12.10 0.00 0.00 2.57
562 563 6.032985 GCGCGAACACATTTTTACATTCATTA 59.967 34.615 12.10 0.00 0.00 1.90
563 564 7.409874 GCGCGAACACATTTTTACATTCATTAA 60.410 33.333 12.10 0.00 0.00 1.40
564 565 7.885714 CGCGAACACATTTTTACATTCATTAAC 59.114 33.333 0.00 0.00 0.00 2.01
604 609 8.863049 GCTATGAACATTCTTTAAAATGTGTGG 58.137 33.333 6.34 1.46 46.49 4.17
609 614 8.816640 AACATTCTTTAAAATGTGTGGACATC 57.183 30.769 6.34 0.00 46.49 3.06
623 628 8.267620 TGTGTGGACATCTTTTAACTATCATG 57.732 34.615 0.00 0.00 0.00 3.07
624 629 8.100164 TGTGTGGACATCTTTTAACTATCATGA 58.900 33.333 0.00 0.00 0.00 3.07
724 729 9.891828 TGTGAACATTTTATAAATGACACAGAC 57.108 29.630 25.33 13.63 39.95 3.51
727 732 9.262472 GAACATTTTATAAATGACACAGACGTC 57.738 33.333 16.58 7.70 36.40 4.34
898 948 0.917333 ATTTACGGGGGCCCTCTGAA 60.917 55.000 22.56 10.91 0.00 3.02
970 1028 2.198287 GCGCCAGGTACCGGATAGA 61.198 63.158 22.13 0.00 0.00 1.98
971 1029 1.741327 GCGCCAGGTACCGGATAGAA 61.741 60.000 22.13 0.00 0.00 2.10
1095 1153 2.034048 GCGGCAAACCAAAGGGGAAA 62.034 55.000 0.00 0.00 41.15 3.13
1388 1453 2.876645 CGACGACGAAGCAGGAGC 60.877 66.667 0.00 0.00 42.66 4.70
1396 1461 2.670934 AAGCAGGAGCCAGCAACG 60.671 61.111 6.67 0.00 43.56 4.10
1503 1569 1.152756 TCCCTGATCTCGATCGGCA 60.153 57.895 16.41 7.87 41.68 5.69
1634 1703 8.255206 TCTTCATCATCCTTTTTGAATCATTGG 58.745 33.333 0.00 0.00 0.00 3.16
1697 1766 4.762765 TGGTTGTGCTATGTATTCCGTTTT 59.237 37.500 0.00 0.00 0.00 2.43
1704 1773 6.037172 GTGCTATGTATTCCGTTTTGTCTGAT 59.963 38.462 0.00 0.00 0.00 2.90
1858 1927 0.749649 GAGGAGCTCGTGTCATGGAT 59.250 55.000 14.78 0.00 0.00 3.41
1924 1993 3.997021 AGAAGACGTCAATACTGCAAAGG 59.003 43.478 19.50 0.00 0.00 3.11
1945 2014 1.271127 TGGGTGATCCGAATCCAGCA 61.271 55.000 0.00 0.00 38.76 4.41
1995 2064 2.704572 CAAGCTCTAACTTGTGGGAGG 58.295 52.381 0.00 0.00 41.74 4.30
2001 2070 4.192317 CTCTAACTTGTGGGAGGTAATGC 58.808 47.826 0.00 0.00 0.00 3.56
2012 3702 3.131046 GGGAGGTAATGCTTCCAATGTTG 59.869 47.826 1.61 0.00 44.43 3.33
2018 3708 4.361451 AATGCTTCCAATGTTGACGATC 57.639 40.909 0.00 0.00 0.00 3.69
2019 3709 2.777094 TGCTTCCAATGTTGACGATCA 58.223 42.857 0.00 0.00 0.00 2.92
2036 3726 4.935885 GATCATTGAGATAATGGTCGCC 57.064 45.455 0.00 0.00 37.00 5.54
2037 3727 3.836365 TCATTGAGATAATGGTCGCCA 57.164 42.857 1.01 1.01 38.19 5.69
2047 3737 2.418368 ATGGTCGCCATTGAGCTAAA 57.582 45.000 5.65 0.00 42.23 1.85
2048 3738 2.192664 TGGTCGCCATTGAGCTAAAA 57.807 45.000 0.00 0.00 37.28 1.52
2049 3739 2.722094 TGGTCGCCATTGAGCTAAAAT 58.278 42.857 0.00 0.00 37.28 1.82
2050 3740 2.682856 TGGTCGCCATTGAGCTAAAATC 59.317 45.455 0.00 0.00 37.28 2.17
2051 3741 2.033424 GGTCGCCATTGAGCTAAAATCC 59.967 50.000 0.00 0.00 33.66 3.01
2052 3742 2.682856 GTCGCCATTGAGCTAAAATCCA 59.317 45.455 0.00 0.00 0.00 3.41
2053 3743 3.128589 GTCGCCATTGAGCTAAAATCCAA 59.871 43.478 0.00 0.00 0.00 3.53
2096 3786 1.789464 CAATGTTAGCGGCGAGAGATC 59.211 52.381 12.98 0.00 0.00 2.75
2098 3788 1.093496 TGTTAGCGGCGAGAGATCGA 61.093 55.000 12.98 0.00 34.64 3.59
2131 3821 0.759346 AGCAAGGAGTCGAAACCAGT 59.241 50.000 10.95 0.00 0.00 4.00
2377 4115 4.260656 GCTATGTTTTCTCATTGCGTTTCG 59.739 41.667 0.00 0.00 37.00 3.46
2454 4196 5.705609 AATGTTGCTTACGTTGATTTCCT 57.294 34.783 0.00 0.00 34.68 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.019860 TCAGCTCTGAAGGTTCTGCTATTT 60.020 41.667 0.00 0.00 36.53 1.40
1 2 3.517100 TCAGCTCTGAAGGTTCTGCTATT 59.483 43.478 0.00 0.00 36.53 1.73
2 3 3.102972 TCAGCTCTGAAGGTTCTGCTAT 58.897 45.455 0.00 0.00 36.53 2.97
3 4 2.495270 CTCAGCTCTGAAGGTTCTGCTA 59.505 50.000 0.93 0.00 39.39 3.49
4 5 1.275856 CTCAGCTCTGAAGGTTCTGCT 59.724 52.381 0.93 0.00 39.39 4.24
5 6 1.274728 TCTCAGCTCTGAAGGTTCTGC 59.725 52.381 0.93 0.00 39.39 4.26
6 7 2.824936 TCTCTCAGCTCTGAAGGTTCTG 59.175 50.000 0.93 0.00 39.39 3.02
7 8 3.091545 CTCTCTCAGCTCTGAAGGTTCT 58.908 50.000 0.93 0.00 39.39 3.01
8 9 2.417243 GCTCTCTCAGCTCTGAAGGTTC 60.417 54.545 0.93 0.00 45.83 3.62
9 10 1.550072 GCTCTCTCAGCTCTGAAGGTT 59.450 52.381 0.93 0.00 45.83 3.50
10 11 1.185315 GCTCTCTCAGCTCTGAAGGT 58.815 55.000 0.93 0.00 45.83 3.50
32 33 5.499139 TTTACACTTCCAAGCACTGAAAG 57.501 39.130 0.00 0.00 42.29 2.62
33 34 6.096141 TGAATTTACACTTCCAAGCACTGAAA 59.904 34.615 0.00 0.00 0.00 2.69
34 35 5.592282 TGAATTTACACTTCCAAGCACTGAA 59.408 36.000 0.00 0.00 0.00 3.02
35 36 5.129634 TGAATTTACACTTCCAAGCACTGA 58.870 37.500 0.00 0.00 0.00 3.41
36 37 5.437289 TGAATTTACACTTCCAAGCACTG 57.563 39.130 0.00 0.00 0.00 3.66
37 38 5.183904 GGATGAATTTACACTTCCAAGCACT 59.816 40.000 0.00 0.00 32.78 4.40
38 39 5.048083 TGGATGAATTTACACTTCCAAGCAC 60.048 40.000 0.00 0.00 37.39 4.40
39 40 5.076182 TGGATGAATTTACACTTCCAAGCA 58.924 37.500 0.00 0.00 37.39 3.91
40 41 5.643379 TGGATGAATTTACACTTCCAAGC 57.357 39.130 0.00 0.00 37.39 4.01
41 42 7.395190 TCATGGATGAATTTACACTTCCAAG 57.605 36.000 0.00 0.00 41.34 3.61
42 43 7.959658 ATCATGGATGAATTTACACTTCCAA 57.040 32.000 0.00 0.00 41.34 3.53
43 44 9.288576 GATATCATGGATGAATTTACACTTCCA 57.711 33.333 0.00 0.00 41.90 3.53
44 45 9.512588 AGATATCATGGATGAATTTACACTTCC 57.487 33.333 5.32 0.00 40.69 3.46
50 51 9.837525 GCAAAGAGATATCATGGATGAATTTAC 57.162 33.333 5.32 0.00 40.69 2.01
51 52 9.803507 AGCAAAGAGATATCATGGATGAATTTA 57.196 29.630 5.32 0.00 40.69 1.40
52 53 8.707796 AGCAAAGAGATATCATGGATGAATTT 57.292 30.769 5.32 0.00 40.69 1.82
53 54 8.577296 CAAGCAAAGAGATATCATGGATGAATT 58.423 33.333 5.32 0.00 40.69 2.17
54 55 7.309255 GCAAGCAAAGAGATATCATGGATGAAT 60.309 37.037 5.32 0.00 40.69 2.57
55 56 6.016527 GCAAGCAAAGAGATATCATGGATGAA 60.017 38.462 5.32 0.00 40.69 2.57
56 57 5.472478 GCAAGCAAAGAGATATCATGGATGA 59.528 40.000 5.32 0.00 41.70 2.92
57 58 5.473846 AGCAAGCAAAGAGATATCATGGATG 59.526 40.000 5.32 0.00 0.00 3.51
58 59 5.632118 AGCAAGCAAAGAGATATCATGGAT 58.368 37.500 5.32 0.00 0.00 3.41
59 60 5.045012 AGCAAGCAAAGAGATATCATGGA 57.955 39.130 5.32 0.00 0.00 3.41
60 61 4.820173 TGAGCAAGCAAAGAGATATCATGG 59.180 41.667 5.32 0.00 0.00 3.66
61 62 6.561737 ATGAGCAAGCAAAGAGATATCATG 57.438 37.500 5.32 0.00 0.00 3.07
62 63 6.879993 CCTATGAGCAAGCAAAGAGATATCAT 59.120 38.462 5.32 0.00 0.00 2.45
63 64 6.228995 CCTATGAGCAAGCAAAGAGATATCA 58.771 40.000 5.32 0.00 0.00 2.15
64 65 5.642919 CCCTATGAGCAAGCAAAGAGATATC 59.357 44.000 0.00 0.00 0.00 1.63
65 66 5.072872 ACCCTATGAGCAAGCAAAGAGATAT 59.927 40.000 0.00 0.00 0.00 1.63
66 67 4.410228 ACCCTATGAGCAAGCAAAGAGATA 59.590 41.667 0.00 0.00 0.00 1.98
67 68 3.201708 ACCCTATGAGCAAGCAAAGAGAT 59.798 43.478 0.00 0.00 0.00 2.75
68 69 2.573462 ACCCTATGAGCAAGCAAAGAGA 59.427 45.455 0.00 0.00 0.00 3.10
69 70 2.681848 CACCCTATGAGCAAGCAAAGAG 59.318 50.000 0.00 0.00 0.00 2.85
70 71 2.305635 TCACCCTATGAGCAAGCAAAGA 59.694 45.455 0.00 0.00 31.91 2.52
71 72 2.715046 TCACCCTATGAGCAAGCAAAG 58.285 47.619 0.00 0.00 31.91 2.77
72 73 2.877097 TCACCCTATGAGCAAGCAAA 57.123 45.000 0.00 0.00 31.91 3.68
73 74 2.618816 CCTTCACCCTATGAGCAAGCAA 60.619 50.000 0.00 0.00 38.99 3.91
74 75 1.065199 CCTTCACCCTATGAGCAAGCA 60.065 52.381 0.00 0.00 38.99 3.91
75 76 1.210478 TCCTTCACCCTATGAGCAAGC 59.790 52.381 0.00 0.00 38.99 4.01
76 77 3.853355 ATCCTTCACCCTATGAGCAAG 57.147 47.619 0.00 0.00 38.99 4.01
77 78 3.266772 ACAATCCTTCACCCTATGAGCAA 59.733 43.478 0.00 0.00 38.99 3.91
78 79 2.846206 ACAATCCTTCACCCTATGAGCA 59.154 45.455 0.00 0.00 38.99 4.26
79 80 3.567478 ACAATCCTTCACCCTATGAGC 57.433 47.619 0.00 0.00 38.99 4.26
80 81 5.614324 TGTACAATCCTTCACCCTATGAG 57.386 43.478 0.00 0.00 38.99 2.90
81 82 6.381498 TTTGTACAATCCTTCACCCTATGA 57.619 37.500 9.56 0.00 34.65 2.15
82 83 6.127730 GGTTTTGTACAATCCTTCACCCTATG 60.128 42.308 9.56 0.00 0.00 2.23
83 84 5.949952 GGTTTTGTACAATCCTTCACCCTAT 59.050 40.000 9.56 0.00 0.00 2.57
84 85 5.163077 TGGTTTTGTACAATCCTTCACCCTA 60.163 40.000 22.30 5.71 0.00 3.53
85 86 4.149598 GGTTTTGTACAATCCTTCACCCT 58.850 43.478 9.56 0.00 0.00 4.34
86 87 3.892588 TGGTTTTGTACAATCCTTCACCC 59.107 43.478 22.30 7.00 0.00 4.61
87 88 5.523438 TTGGTTTTGTACAATCCTTCACC 57.477 39.130 22.30 15.79 0.00 4.02
88 89 7.039270 AGTTTTGGTTTTGTACAATCCTTCAC 58.961 34.615 22.30 17.04 0.00 3.18
89 90 7.123547 AGAGTTTTGGTTTTGTACAATCCTTCA 59.876 33.333 22.30 10.75 0.00 3.02
90 91 7.489160 AGAGTTTTGGTTTTGTACAATCCTTC 58.511 34.615 22.30 14.85 0.00 3.46
91 92 7.418337 AGAGTTTTGGTTTTGTACAATCCTT 57.582 32.000 22.30 9.71 0.00 3.36
92 93 7.264947 CAAGAGTTTTGGTTTTGTACAATCCT 58.735 34.615 22.30 9.11 0.00 3.24
93 94 6.478673 CCAAGAGTTTTGGTTTTGTACAATCC 59.521 38.462 9.56 14.86 34.92 3.01
94 95 6.019075 GCCAAGAGTTTTGGTTTTGTACAATC 60.019 38.462 9.56 5.99 41.53 2.67
95 96 5.815222 GCCAAGAGTTTTGGTTTTGTACAAT 59.185 36.000 9.56 0.00 41.53 2.71
96 97 5.046950 AGCCAAGAGTTTTGGTTTTGTACAA 60.047 36.000 13.61 3.59 41.53 2.41
97 98 4.464597 AGCCAAGAGTTTTGGTTTTGTACA 59.535 37.500 13.61 0.00 41.53 2.90
98 99 5.006153 AGCCAAGAGTTTTGGTTTTGTAC 57.994 39.130 13.61 0.00 41.53 2.90
99 100 5.415221 CAAGCCAAGAGTTTTGGTTTTGTA 58.585 37.500 11.25 0.00 40.32 2.41
100 101 4.252878 CAAGCCAAGAGTTTTGGTTTTGT 58.747 39.130 11.25 0.00 40.32 2.83
101 102 3.622612 CCAAGCCAAGAGTTTTGGTTTTG 59.377 43.478 11.25 14.98 40.32 2.44
102 103 3.370421 CCCAAGCCAAGAGTTTTGGTTTT 60.370 43.478 11.25 5.41 40.32 2.43
103 104 2.170397 CCCAAGCCAAGAGTTTTGGTTT 59.830 45.455 13.61 11.05 42.52 3.27
104 105 1.762370 CCCAAGCCAAGAGTTTTGGTT 59.238 47.619 13.61 5.14 41.53 3.67
105 106 1.342975 ACCCAAGCCAAGAGTTTTGGT 60.343 47.619 13.61 0.00 41.53 3.67
106 107 1.413118 ACCCAAGCCAAGAGTTTTGG 58.587 50.000 8.09 8.09 42.37 3.28
107 108 2.825205 CAACCCAAGCCAAGAGTTTTG 58.175 47.619 0.00 0.00 0.00 2.44
108 109 1.138859 GCAACCCAAGCCAAGAGTTTT 59.861 47.619 0.00 0.00 0.00 2.43
109 110 0.752658 GCAACCCAAGCCAAGAGTTT 59.247 50.000 0.00 0.00 0.00 2.66
110 111 0.106015 AGCAACCCAAGCCAAGAGTT 60.106 50.000 0.00 0.00 0.00 3.01
111 112 0.106015 AAGCAACCCAAGCCAAGAGT 60.106 50.000 0.00 0.00 0.00 3.24
112 113 0.600057 GAAGCAACCCAAGCCAAGAG 59.400 55.000 0.00 0.00 0.00 2.85
113 114 0.185901 AGAAGCAACCCAAGCCAAGA 59.814 50.000 0.00 0.00 0.00 3.02
114 115 1.043022 AAGAAGCAACCCAAGCCAAG 58.957 50.000 0.00 0.00 0.00 3.61
115 116 1.138661 CAAAGAAGCAACCCAAGCCAA 59.861 47.619 0.00 0.00 0.00 4.52
116 117 0.752054 CAAAGAAGCAACCCAAGCCA 59.248 50.000 0.00 0.00 0.00 4.75
117 118 0.752658 ACAAAGAAGCAACCCAAGCC 59.247 50.000 0.00 0.00 0.00 4.35
118 119 2.204237 CAACAAAGAAGCAACCCAAGC 58.796 47.619 0.00 0.00 0.00 4.01
119 120 3.525268 ACAACAAAGAAGCAACCCAAG 57.475 42.857 0.00 0.00 0.00 3.61
120 121 5.407407 TTTACAACAAAGAAGCAACCCAA 57.593 34.783 0.00 0.00 0.00 4.12
121 122 4.679372 GCTTTACAACAAAGAAGCAACCCA 60.679 41.667 1.04 0.00 42.94 4.51
122 123 3.802139 GCTTTACAACAAAGAAGCAACCC 59.198 43.478 1.04 0.00 42.94 4.11
127 128 4.307443 ACCTGCTTTACAACAAAGAAGC 57.693 40.909 1.04 0.00 43.54 3.86
128 129 6.483640 ACTCTACCTGCTTTACAACAAAGAAG 59.516 38.462 1.04 0.00 33.58 2.85
129 130 6.354130 ACTCTACCTGCTTTACAACAAAGAA 58.646 36.000 1.04 0.00 0.00 2.52
130 131 5.925509 ACTCTACCTGCTTTACAACAAAGA 58.074 37.500 1.04 0.00 0.00 2.52
131 132 6.038271 ACAACTCTACCTGCTTTACAACAAAG 59.962 38.462 0.00 0.00 0.00 2.77
132 133 5.883673 ACAACTCTACCTGCTTTACAACAAA 59.116 36.000 0.00 0.00 0.00 2.83
133 134 5.433526 ACAACTCTACCTGCTTTACAACAA 58.566 37.500 0.00 0.00 0.00 2.83
134 135 5.031066 ACAACTCTACCTGCTTTACAACA 57.969 39.130 0.00 0.00 0.00 3.33
135 136 6.373186 AAACAACTCTACCTGCTTTACAAC 57.627 37.500 0.00 0.00 0.00 3.32
136 137 6.204108 GCTAAACAACTCTACCTGCTTTACAA 59.796 38.462 0.00 0.00 0.00 2.41
137 138 5.699458 GCTAAACAACTCTACCTGCTTTACA 59.301 40.000 0.00 0.00 0.00 2.41
138 139 5.121925 GGCTAAACAACTCTACCTGCTTTAC 59.878 44.000 0.00 0.00 0.00 2.01
139 140 5.221762 TGGCTAAACAACTCTACCTGCTTTA 60.222 40.000 0.00 0.00 0.00 1.85
140 141 4.072839 GGCTAAACAACTCTACCTGCTTT 58.927 43.478 0.00 0.00 0.00 3.51
141 142 3.072476 TGGCTAAACAACTCTACCTGCTT 59.928 43.478 0.00 0.00 0.00 3.91
142 143 2.637872 TGGCTAAACAACTCTACCTGCT 59.362 45.455 0.00 0.00 0.00 4.24
143 144 3.053831 TGGCTAAACAACTCTACCTGC 57.946 47.619 0.00 0.00 0.00 4.85
144 145 5.104900 ACCTATGGCTAAACAACTCTACCTG 60.105 44.000 0.00 0.00 0.00 4.00
145 146 5.030820 ACCTATGGCTAAACAACTCTACCT 58.969 41.667 0.00 0.00 0.00 3.08
146 147 5.354842 ACCTATGGCTAAACAACTCTACC 57.645 43.478 0.00 0.00 0.00 3.18
147 148 7.068470 AGTCTACCTATGGCTAAACAACTCTAC 59.932 40.741 0.00 0.00 0.00 2.59
148 149 7.124052 AGTCTACCTATGGCTAAACAACTCTA 58.876 38.462 0.00 0.00 0.00 2.43
149 150 5.958987 AGTCTACCTATGGCTAAACAACTCT 59.041 40.000 0.00 0.00 0.00 3.24
150 151 6.097129 AGAGTCTACCTATGGCTAAACAACTC 59.903 42.308 0.00 0.00 0.00 3.01
151 152 5.958987 AGAGTCTACCTATGGCTAAACAACT 59.041 40.000 0.00 0.00 0.00 3.16
152 153 6.223351 AGAGTCTACCTATGGCTAAACAAC 57.777 41.667 0.00 0.00 0.00 3.32
153 154 6.869206 AAGAGTCTACCTATGGCTAAACAA 57.131 37.500 0.00 0.00 0.00 2.83
154 155 6.869206 AAAGAGTCTACCTATGGCTAAACA 57.131 37.500 0.00 0.00 0.00 2.83
155 156 6.762187 GGAAAAGAGTCTACCTATGGCTAAAC 59.238 42.308 0.00 0.00 0.00 2.01
156 157 6.672657 AGGAAAAGAGTCTACCTATGGCTAAA 59.327 38.462 10.48 0.00 0.00 1.85
157 158 6.203072 AGGAAAAGAGTCTACCTATGGCTAA 58.797 40.000 10.48 0.00 0.00 3.09
158 159 5.778542 AGGAAAAGAGTCTACCTATGGCTA 58.221 41.667 10.48 0.00 0.00 3.93
159 160 4.625963 AGGAAAAGAGTCTACCTATGGCT 58.374 43.478 10.48 0.00 0.00 4.75
160 161 5.360649 AAGGAAAAGAGTCTACCTATGGC 57.639 43.478 11.98 0.00 0.00 4.40
161 162 7.337184 GGAAAAAGGAAAAGAGTCTACCTATGG 59.663 40.741 11.98 0.00 0.00 2.74
162 163 8.103935 AGGAAAAAGGAAAAGAGTCTACCTATG 58.896 37.037 11.98 0.00 0.00 2.23
163 164 8.220898 AGGAAAAAGGAAAAGAGTCTACCTAT 57.779 34.615 11.98 4.53 0.00 2.57
164 165 7.628501 AGGAAAAAGGAAAAGAGTCTACCTA 57.371 36.000 11.98 0.00 0.00 3.08
165 166 6.517013 AGGAAAAAGGAAAAGAGTCTACCT 57.483 37.500 0.00 0.15 0.00 3.08
166 167 6.207025 GGAAGGAAAAAGGAAAAGAGTCTACC 59.793 42.308 0.00 0.00 0.00 3.18
167 168 6.999272 AGGAAGGAAAAAGGAAAAGAGTCTAC 59.001 38.462 0.00 0.00 0.00 2.59
168 169 7.150447 AGGAAGGAAAAAGGAAAAGAGTCTA 57.850 36.000 0.00 0.00 0.00 2.59
169 170 6.019656 AGGAAGGAAAAAGGAAAAGAGTCT 57.980 37.500 0.00 0.00 0.00 3.24
170 171 6.096987 ACAAGGAAGGAAAAAGGAAAAGAGTC 59.903 38.462 0.00 0.00 0.00 3.36
171 172 5.958380 ACAAGGAAGGAAAAAGGAAAAGAGT 59.042 36.000 0.00 0.00 0.00 3.24
172 173 6.471233 ACAAGGAAGGAAAAAGGAAAAGAG 57.529 37.500 0.00 0.00 0.00 2.85
173 174 9.297037 CTATACAAGGAAGGAAAAAGGAAAAGA 57.703 33.333 0.00 0.00 0.00 2.52
174 175 9.078990 ACTATACAAGGAAGGAAAAAGGAAAAG 57.921 33.333 0.00 0.00 0.00 2.27
175 176 9.074576 GACTATACAAGGAAGGAAAAAGGAAAA 57.925 33.333 0.00 0.00 0.00 2.29
176 177 8.445588 AGACTATACAAGGAAGGAAAAAGGAAA 58.554 33.333 0.00 0.00 0.00 3.13
177 178 7.883311 CAGACTATACAAGGAAGGAAAAAGGAA 59.117 37.037 0.00 0.00 0.00 3.36
178 179 7.017254 ACAGACTATACAAGGAAGGAAAAAGGA 59.983 37.037 0.00 0.00 0.00 3.36
179 180 7.168905 ACAGACTATACAAGGAAGGAAAAAGG 58.831 38.462 0.00 0.00 0.00 3.11
180 181 9.720769 TTACAGACTATACAAGGAAGGAAAAAG 57.279 33.333 0.00 0.00 0.00 2.27
184 185 9.667107 CAAATTACAGACTATACAAGGAAGGAA 57.333 33.333 0.00 0.00 0.00 3.36
185 186 8.822805 ACAAATTACAGACTATACAAGGAAGGA 58.177 33.333 0.00 0.00 0.00 3.36
186 187 9.449719 AACAAATTACAGACTATACAAGGAAGG 57.550 33.333 0.00 0.00 0.00 3.46
189 190 9.787435 ACAAACAAATTACAGACTATACAAGGA 57.213 29.630 0.00 0.00 0.00 3.36
197 198 9.826574 AGAACTGTACAAACAAATTACAGACTA 57.173 29.630 13.51 0.00 43.65 2.59
198 199 8.612619 CAGAACTGTACAAACAAATTACAGACT 58.387 33.333 13.51 9.55 43.65 3.24
199 200 7.376072 GCAGAACTGTACAAACAAATTACAGAC 59.624 37.037 13.51 7.89 43.65 3.51
200 201 7.282224 AGCAGAACTGTACAAACAAATTACAGA 59.718 33.333 13.51 0.00 43.65 3.41
201 202 7.417612 AGCAGAACTGTACAAACAAATTACAG 58.582 34.615 0.00 6.47 45.52 2.74
202 203 7.328277 AGCAGAACTGTACAAACAAATTACA 57.672 32.000 0.00 0.00 34.49 2.41
203 204 8.628882 AAAGCAGAACTGTACAAACAAATTAC 57.371 30.769 0.00 0.00 34.49 1.89
204 205 8.682710 AGAAAGCAGAACTGTACAAACAAATTA 58.317 29.630 0.00 0.00 34.49 1.40
205 206 7.547227 AGAAAGCAGAACTGTACAAACAAATT 58.453 30.769 0.00 0.00 34.49 1.82
206 207 7.100458 AGAAAGCAGAACTGTACAAACAAAT 57.900 32.000 0.00 0.00 34.49 2.32
207 208 6.509418 AGAAAGCAGAACTGTACAAACAAA 57.491 33.333 0.00 0.00 34.49 2.83
208 209 6.509418 AAGAAAGCAGAACTGTACAAACAA 57.491 33.333 0.00 0.00 34.49 2.83
209 210 6.509418 AAAGAAAGCAGAACTGTACAAACA 57.491 33.333 0.00 0.00 0.00 2.83
214 215 9.827411 CCTTTATTAAAGAAAGCAGAACTGTAC 57.173 33.333 16.13 0.00 41.02 2.90
215 216 9.010029 CCCTTTATTAAAGAAAGCAGAACTGTA 57.990 33.333 16.13 0.00 41.02 2.74
216 217 7.523873 GCCCTTTATTAAAGAAAGCAGAACTGT 60.524 37.037 16.13 0.00 41.02 3.55
217 218 6.808704 GCCCTTTATTAAAGAAAGCAGAACTG 59.191 38.462 16.13 0.00 41.02 3.16
218 219 6.721668 AGCCCTTTATTAAAGAAAGCAGAACT 59.278 34.615 16.13 0.33 41.02 3.01
219 220 6.808704 CAGCCCTTTATTAAAGAAAGCAGAAC 59.191 38.462 16.13 0.00 41.02 3.01
220 221 6.493458 ACAGCCCTTTATTAAAGAAAGCAGAA 59.507 34.615 16.13 0.00 41.02 3.02
221 222 6.010219 ACAGCCCTTTATTAAAGAAAGCAGA 58.990 36.000 16.13 0.00 41.02 4.26
222 223 6.095377 CACAGCCCTTTATTAAAGAAAGCAG 58.905 40.000 16.13 13.86 41.02 4.24
223 224 5.047377 CCACAGCCCTTTATTAAAGAAAGCA 60.047 40.000 16.13 0.00 41.02 3.91
224 225 5.410924 CCACAGCCCTTTATTAAAGAAAGC 58.589 41.667 16.13 14.59 41.02 3.51
225 226 5.105351 CCCCACAGCCCTTTATTAAAGAAAG 60.105 44.000 16.13 6.98 41.02 2.62
226 227 4.775253 CCCCACAGCCCTTTATTAAAGAAA 59.225 41.667 16.13 0.00 41.02 2.52
227 228 4.349365 CCCCACAGCCCTTTATTAAAGAA 58.651 43.478 16.13 0.00 41.02 2.52
228 229 3.880117 GCCCCACAGCCCTTTATTAAAGA 60.880 47.826 16.13 0.00 41.02 2.52
229 230 2.430694 GCCCCACAGCCCTTTATTAAAG 59.569 50.000 8.88 8.88 38.24 1.85
230 231 2.043801 AGCCCCACAGCCCTTTATTAAA 59.956 45.455 0.00 0.00 0.00 1.52
231 232 1.643811 AGCCCCACAGCCCTTTATTAA 59.356 47.619 0.00 0.00 0.00 1.40
232 233 1.304891 AGCCCCACAGCCCTTTATTA 58.695 50.000 0.00 0.00 0.00 0.98
233 234 0.413434 AAGCCCCACAGCCCTTTATT 59.587 50.000 0.00 0.00 0.00 1.40
234 235 0.413434 AAAGCCCCACAGCCCTTTAT 59.587 50.000 0.00 0.00 0.00 1.40
235 236 0.541764 CAAAGCCCCACAGCCCTTTA 60.542 55.000 0.00 0.00 0.00 1.85
236 237 1.838396 CAAAGCCCCACAGCCCTTT 60.838 57.895 0.00 0.00 0.00 3.11
237 238 2.203684 CAAAGCCCCACAGCCCTT 60.204 61.111 0.00 0.00 0.00 3.95
249 250 6.194796 TGAATATTTACTGTGAGGCAAAGC 57.805 37.500 0.00 0.00 0.00 3.51
250 251 9.474920 TTTTTGAATATTTACTGTGAGGCAAAG 57.525 29.630 0.00 0.00 0.00 2.77
290 291 3.629398 CCTTCGGCTCAAATTTCAGCTAT 59.371 43.478 14.04 0.00 35.82 2.97
299 300 0.693049 ACCTGACCTTCGGCTCAAAT 59.307 50.000 0.00 0.00 0.00 2.32
302 303 0.039180 TCTACCTGACCTTCGGCTCA 59.961 55.000 0.00 0.00 0.00 4.26
307 308 3.066900 ACGAATGATCTACCTGACCTTCG 59.933 47.826 0.00 0.00 38.25 3.79
336 337 4.223923 AGGAAGGAATACTGACAACTCTGG 59.776 45.833 0.00 0.00 0.00 3.86
344 345 4.454504 TCGCAAAAAGGAAGGAATACTGAC 59.545 41.667 0.00 0.00 0.00 3.51
345 346 4.647611 TCGCAAAAAGGAAGGAATACTGA 58.352 39.130 0.00 0.00 0.00 3.41
346 347 4.695455 TCTCGCAAAAAGGAAGGAATACTG 59.305 41.667 0.00 0.00 0.00 2.74
347 348 4.906618 TCTCGCAAAAAGGAAGGAATACT 58.093 39.130 0.00 0.00 0.00 2.12
348 349 5.123979 ACATCTCGCAAAAAGGAAGGAATAC 59.876 40.000 0.00 0.00 0.00 1.89
349 350 5.253330 ACATCTCGCAAAAAGGAAGGAATA 58.747 37.500 0.00 0.00 0.00 1.75
350 351 4.082125 ACATCTCGCAAAAAGGAAGGAAT 58.918 39.130 0.00 0.00 0.00 3.01
351 352 3.486383 ACATCTCGCAAAAAGGAAGGAA 58.514 40.909 0.00 0.00 0.00 3.36
352 353 3.140325 ACATCTCGCAAAAAGGAAGGA 57.860 42.857 0.00 0.00 0.00 3.36
353 354 3.004734 ACAACATCTCGCAAAAAGGAAGG 59.995 43.478 0.00 0.00 0.00 3.46
354 355 4.222114 GACAACATCTCGCAAAAAGGAAG 58.778 43.478 0.00 0.00 0.00 3.46
355 356 3.629855 TGACAACATCTCGCAAAAAGGAA 59.370 39.130 0.00 0.00 0.00 3.36
356 357 3.210227 TGACAACATCTCGCAAAAAGGA 58.790 40.909 0.00 0.00 0.00 3.36
357 358 3.558505 CTGACAACATCTCGCAAAAAGG 58.441 45.455 0.00 0.00 0.00 3.11
358 359 2.975851 GCTGACAACATCTCGCAAAAAG 59.024 45.455 0.00 0.00 0.00 2.27
359 360 2.357323 TGCTGACAACATCTCGCAAAAA 59.643 40.909 0.00 0.00 33.43 1.94
360 361 1.946081 TGCTGACAACATCTCGCAAAA 59.054 42.857 0.00 0.00 33.43 2.44
361 362 1.592064 TGCTGACAACATCTCGCAAA 58.408 45.000 0.00 0.00 33.43 3.68
362 363 1.812235 ATGCTGACAACATCTCGCAA 58.188 45.000 0.00 0.00 37.76 4.85
363 364 1.733912 GAATGCTGACAACATCTCGCA 59.266 47.619 0.00 0.00 38.32 5.10
364 365 1.063174 GGAATGCTGACAACATCTCGC 59.937 52.381 0.00 0.00 0.00 5.03
365 366 2.625737 AGGAATGCTGACAACATCTCG 58.374 47.619 0.00 0.00 0.00 4.04
366 367 4.352600 CAAGGAATGCTGACAACATCTC 57.647 45.455 0.00 0.00 0.00 2.75
414 415 9.607285 AAAACTTACAAGATATTGCTTTACGTG 57.393 29.630 0.00 0.00 0.00 4.49
415 416 9.821662 GAAAACTTACAAGATATTGCTTTACGT 57.178 29.630 0.00 0.00 0.00 3.57
495 496 9.647797 TTCATAACGTACAGAAAATGTCTATGT 57.352 29.630 0.00 0.00 42.70 2.29
499 500 7.956420 TGTTCATAACGTACAGAAAATGTCT 57.044 32.000 0.00 0.00 42.70 3.41
513 514 9.395405 CGCAATTTTTCATAAATGTTCATAACG 57.605 29.630 0.00 0.00 0.00 3.18
515 516 8.106956 CGCGCAATTTTTCATAAATGTTCATAA 58.893 29.630 8.75 0.00 0.00 1.90
599 604 8.492673 TCATGATAGTTAAAAGATGTCCACAC 57.507 34.615 0.00 0.00 0.00 3.82
651 656 9.881529 GATGTAAACTTTGGTCGTGTAATTTAA 57.118 29.630 0.00 0.00 0.00 1.52
652 657 9.275398 AGATGTAAACTTTGGTCGTGTAATTTA 57.725 29.630 0.00 0.00 0.00 1.40
865 908 2.680577 CGTAAATGGGCTATACGGGTC 58.319 52.381 0.00 0.00 38.89 4.46
898 948 0.032615 ATTCCTCCGAGAGCCTCACT 60.033 55.000 0.00 0.00 0.00 3.41
970 1028 7.254286 CGGTTTGATTGATTCCGAAAAACTTTT 60.254 33.333 0.00 0.00 43.22 2.27
971 1029 6.200097 CGGTTTGATTGATTCCGAAAAACTTT 59.800 34.615 0.00 0.00 43.22 2.66
982 1040 3.699067 CCATCTGCGGTTTGATTGATTC 58.301 45.455 0.00 0.00 0.00 2.52
1075 1133 4.002506 CCCCTTTGGTTTGCCGCC 62.003 66.667 0.00 0.00 37.67 6.13
1095 1153 1.513158 CTGCGTCATCCTCCTCGTT 59.487 57.895 0.00 0.00 0.00 3.85
1580 1646 4.898320 TGATTGCTGCCGATATAGTGAAT 58.102 39.130 0.00 0.00 0.00 2.57
1697 1766 6.550938 ATTAGATCAAGTGACCATCAGACA 57.449 37.500 0.00 0.00 0.00 3.41
1858 1927 2.170166 GCTCCACCATGAAATCAACCA 58.830 47.619 0.00 0.00 0.00 3.67
1924 1993 1.879796 GCTGGATTCGGATCACCCATC 60.880 57.143 5.94 0.00 33.77 3.51
1995 2064 4.678509 TCGTCAACATTGGAAGCATTAC 57.321 40.909 0.00 0.00 0.00 1.89
2012 3702 4.090642 GCGACCATTATCTCAATGATCGTC 59.909 45.833 13.59 4.66 43.64 4.20
2036 3726 6.254157 CGTGGATTTTGGATTTTAGCTCAATG 59.746 38.462 0.00 0.00 0.00 2.82
2037 3727 6.152661 TCGTGGATTTTGGATTTTAGCTCAAT 59.847 34.615 0.00 0.00 0.00 2.57
2046 3736 1.135402 GCGCTCGTGGATTTTGGATTT 60.135 47.619 0.00 0.00 0.00 2.17
2047 3737 0.451783 GCGCTCGTGGATTTTGGATT 59.548 50.000 0.00 0.00 0.00 3.01
2048 3738 0.392998 AGCGCTCGTGGATTTTGGAT 60.393 50.000 2.64 0.00 0.00 3.41
2049 3739 0.248012 TAGCGCTCGTGGATTTTGGA 59.752 50.000 16.34 0.00 0.00 3.53
2050 3740 1.083489 TTAGCGCTCGTGGATTTTGG 58.917 50.000 16.34 0.00 0.00 3.28
2051 3741 2.708514 CATTAGCGCTCGTGGATTTTG 58.291 47.619 16.34 0.00 0.00 2.44
2052 3742 1.064060 GCATTAGCGCTCGTGGATTTT 59.936 47.619 16.34 0.00 0.00 1.82
2053 3743 0.657840 GCATTAGCGCTCGTGGATTT 59.342 50.000 16.34 0.00 0.00 2.17
2073 3763 0.459585 TCTCGCCGCTAACATTGGAC 60.460 55.000 0.00 0.00 0.00 4.02
2096 3786 5.052481 TCCTTGCTGATCAATATGTCTTCG 58.948 41.667 0.00 0.00 33.57 3.79
2098 3788 5.999044 ACTCCTTGCTGATCAATATGTCTT 58.001 37.500 0.00 0.00 33.57 3.01
2131 3821 2.158769 ACATTGGAGGCATTAGCGATCA 60.159 45.455 0.00 0.00 43.41 2.92
2317 4007 4.582240 TGCATTCACAAAGAACACCATACA 59.418 37.500 0.00 0.00 39.49 2.29
2377 4115 3.944087 ACAACATAGAAACAGCCCTCTC 58.056 45.455 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.