>input_sequence_79385
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-----------------ATGGCGAGTTCGTCGGAGAAGGCGCCTTCCCCTGCAGCGGCGGATCTGCCGGAGCGAGGTAAG
ATTACGGTGGCCGGCGGCAAACCAAAGGGGAAAACGAGGAGGATGACGCAGGAGGAGATCGACAGCTACATCCGGTACAA
GGGCGTGCGCATCCCCGTCGACTCCGTCCGCAGGGCGAGCAAGCTGAGGCTGGCCCTCACCAACCTCGACGACCTCGGCA
GC-------CTCCCGGTGTCCCCGGACGACCTGGACGACTACGTCACCAACATGATCCGGGAGGTGAACGCGATCGAGGA
TGACTTCCAGAAAGAGAGAGACGAGATCGCCAAGGAGTACTACGCAAAGGGCTACGTCGAGCGCGAGGTCAGCGACGACG
ACGAAGCAGGAGCCAGCAACGCCCGTGTGGAGATGGGCTCGCCCTCGCCCAGGACCGGAAGCACCGTAACCGTAAGGAAG
CTCAACTGA-----------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G362800
AAATAGCAGAACCTTCAGAGCTGAGAGAGCTACTTTCAGTGCTTGGAAGTGTAAATTCATCCATGATATCTCTTTGCTTG
CTCATAGGGTGAAGGATTGTACAAAACCAAAACTCTTGGCTTGGGTTGCTTCTTTGTTGTAAAGCAGGTAGAGTTGTTTA
GCCATAGGTAGACTCTTTTCCTTTTTCCTTCCTTGTATAGTCTGTAATTTGTTTGTACAGTTCTGCTTTCTTTAATAAAG
GGCTGTGGGGCTTTGCCTCACAGTAAATATTCAAAAAAAAAACTAACTTAATAGCTGAAATTTGAGCCGAAGGTCAGGTA
GATCATTCGTAGGCCACCAGAGTTGTCAGTATTCCTTCCTTTTTGCGAGATGTTGTCAGCATTCCTTGCAGAGGTGACAA
TGGTTCATAAGACACACGTAAAGCAATATCTTGTAAGTTTTCATGATAAATTTTGGTATAATCAAAAAAATTGCGTGAAC
ACGTTTTAAAAAATGACATAGACATTTTCTGTACGTTATGAACATTTATGAAAAATTGCGCGAACACATTTTTACATTCA
TTAACA----TTTTTTAAAGATGCTATGAACATTCTTTAAAATGTGTGGACATCTTTTAACTATCATGATTTTTTTAGTG
GTATGAACATTTTTTTTAAATTACACGACCAAAGTTTACATCTTCATGAACATTTTTAAGCGTGTGAACATTTTATAAAT
GACACAGACGTCTTTTTTTTGGAATT-----------------------------------TTCAAGATATTTTTAATGT
ACGTTGCTAAAAAATGTATTAAATTTATTTTTGAAATAAATAAATATATATAATCGGAT--TATATAAAA-GAAAAGAAA
TTAGGAAAAAGAGAAACGAAAAAAGAAGACCCGT-------ATAGCCCATTTACGGGGGCCCTCTGAA--------GTGA
GGCTCTCGGAGGAATCAGTCTTCCTGATATATATCTTCGCCTGATCCGTGCGCCAGGTACCGGATAGAAAAGTTTTTCGG
AATCAATCAAACCGCAGATGGCGAGTTCGTCGGAGAAGGCGCCTTCCCCTGCAGCGGCGGATCTGCCGGAGCGAGGTAAG
ATTACGGTGGCCGGCGGCAAACCAAAGGGGAAAACGAGGAGGATGACGCAGGAGGAGATCGACAGCTACATCCGGTACAA
GGGCGTGCGCATCCCCGTCGACTCCGTCCGCAGGGCGAGCAAGCTGAGGCTGGCCCTCACCAACCTCGACGACCTCGGCA
GC-------CTCCCGGTGTCCCCGGACGACCTGGACGACTACGTCACCAACATGATCCGGGAGGTGAACGCGATCGAGGA
TGACTTCCAGAAAGAGAGAGACGAGATCGCCAAGGAGTACTACGCAAAGGGCTACGTCGAGCGCGAGGTCAGCGACGACG
ACGAAGCAGGAGCCAGCAACGCCCGTGTGGAGATGGGCTCGCCCTCGCCCAGGACCGGAAGCACCGTAACCGTAAGGAAG
CTCAACTGAACGAGCAC-ATTATCAGACTGTCCCTGATCTCGATCGGCAGTGCTTTCGAATAAATCGTCAGTCTGGTAAA
CGATGGATTCAATAGTATGAGCGCTCCTATAGCGCAATAAAAAAAATTCACTATATCGGCAGCAATCATTTTTTCTTC--
-ATCATCCTTTTTGAATCATTGGTCTAGAGTAGTTGATTTGTTTGATTCAGCTTGTATTAAATGGTTGTGCTATGTATTC
CGTTTTGTCTGATGGTCACTTGATCTAATTTTAAACATATAAGGACCGCACGGTGAGTACATTTACATTTTCTGCTGTAA
ATACTAAGTTCATTTAGTTGCACTAGGATATTGTTTTTACCATCTGGTACCTTCACTTTCTATGGTCGAGGAGCTCGTGT
CATGGATGGTTGATTTCATGGTGGAGCTCTGGTTTGCACCATCAATCTCTAGAAGACGTCAATACTGCAAAGGATGGGTG
ATCCGAATCCAGCAGTGCTCTAGCGAGCCAGACTGATCACCAACAAGCTCTAACTTGTGGGAGGTAATGCTTCC------
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---------------AATGTTGACGATCATTGAGATAATGGTCGCCATTGAGCTAAAATCCAAAATCCACGAGCGCTAAT
GCGTCCAATGTTAGCGGCGAGAGATCGAAGACATATTGATCAGCAAGGAGTCGAAACCAGTGATCGCTAATGCCTCCAAT
GTTGGAGGTGCGAGATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGTGTATGGTGTTCTTTGTG------------------------------------------------AATGCATG
GGGTTTATGTTGCTATGTTTTCTCATTGCGTTTCGAGAGGGCTGTTTCTATGTTGTATGTTTA---TTTCATTGCTGCAT
ATACCATTTCTAAATGTTGCTTACG-TTGATTTCCTGGTTGCATCT
>chr2B_281
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----------------------------------------AACTAACTTACTAGCTGAAGTTCGAGCTGAAGGTCAGGTA
GATCATTCGTAGGCCAGCAGAGTT------------------------------GTCAGCATTCCTTGCAGAGGTGACAA
TGGTTCATAAGACATGCGTAAAGCAATATCTTGCAAGTTTTCATGATAAATT-------AATCATAAAAATTAGGTGAAC
ACATTTTTCAAAATGGCATGGACATTTTTTCTATG-TATGAACATTTATGAAAAATTGCGCGAACACATTTTTTATGTTT
CATGAATATTTTTTTTAAAGATGCTATGAACATA-TTTAAAATATGTGAACATATTTTTACTTTCATCTTTTTTAGAGGT
ATGATTTTTTTAAAA--AAATTACACGACCAAAGTTTACATCTTCATGAACATTTTTAAGCGTGTGAACATTTTATAAAT
GACACAGATGTTTTTTTTTGGAATGGTATGAGCAGTTTTGAAAATTACGTGGCTTTTTACATTCAAGATATTTTTAATGG
ACGTTGCTAAAAAAATGAATTGAATTG--------ATATATATAGATATATAATCGGAT--TATATAAAAAGAAAAGAAA
TTAGGAAAAAGAGAAACGAAAAAAGAAAACCCGTACTGGACATAGCCCATTTACGGGGGCCCTCTAAGGTGAGGGCGTGA
GGCTCTCGGAGGAATCAGTCTTCCTAATATATATCTTCGCCTGATCCGTGCGCCAGGTACCGGATAGG-AAGTTTTTCGA
AATCAATCAAACCGCAGATGGCGAGTTCGTCGGAGAAGGCGCCTTCCCCTGCAGCGGCGGATCTGCCGGAGCGAGGTAAG
ATTACGGTGGCCAGCGGCAAACCAAAGAAGAAGACGAGGAGGATGACGCAGGAGGAGATCGACAGCTGCATCCGGTACAA
GGGCGTGCGCATCCCCGTCGACTCCGTCCGCAAGGCGAGCAAGCTGAGGCTGGCCCTCACCAACCTCGACGACCTCGGCA
GC-------CTCCCGGTGTCCCCGGACGAGCTGGATGACTACGTCACCAACATGATCCGGGAGGTGAACGCGATCGAGGA
TGACTTCCAGAAAGAGAGAGACGAGATCGCGAAGGAGTACTACGCAAAGGGCTACGTCGAGCGCGAGGTCAGCGACGACG
ACGAAGCAGGAGGCAGCAACCCCCGTGTGGAGATGGGCTCGCCCTCGCCCATTTCCGGAAGCACCGTAACCGTAAGCAAG
CTCAACTGAACGAGCAC-ATTACCAGACTGTCCCTGATCTCGATCGGCGGTGCTTTCGAATAAATCGTCAGTCTGGTAAA
CGATGGATTCAATAGTATGAGCGCTCCTATAGCGCAATAATAAAATTTCACTATATCGGCAGCAATCATTTTTTCTTA--
-ATCATCCTTTTTGAATCATTGATCTAGAGTAGTTGATTTGTCTGATTCAGCTTGTATTAAATGGTTGTGCTATGTATTC
CATCTCA-------------------------------------------------------------------------
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------------------------------ACATATTGATCAGCAAGGAGTCGAA-CCAGCGATCGCTAATGCCTCCAAT
GTTGGAGGTGCGAGATAAGCGGATTTATG-TTTTTTATTTATGGTGTGTATGCCATCTCAACATGCATGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGCATG
GGGTTTATGTTGCTATGTTTTCTCGTTGCGTTTCAAGAGGGCTGTTTCTATGTTGTAAATGTGTTTTTCCATTGCTGCAT
ATACCATTTCTAAATGTTGCTTACG-TTGATTTCCCTATTGCATCT
>chr2A_812
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--------------------------------------------------TAATCGGATTATATATAAAAAGAAAAGAAA
TTAGGAAAA-GAGAAACCAAAAAAGAAAACCCGTACT--ACATAGCCCATTTACGGGGGCCATCTGAGGTG--------A
GGCTCTCGGAGGAATCAGTCTTCCTGATATATATCTTCGGCTGATCCGTGCGCCAGGTACCGGATAGG-AAGTTTTTCGA
AATCAATCAAACCGCAGATGGCGAGTTCGTCGGAGAAGGCGCCTTCCCCCGCAGCGGCGGATCTGCCGGAGCGAGGTAAG
ATTACGGTGGCCAGCGGCAAACCAAAGGGGAAGACGAGGAGGATGACGCAGGAGGAGATCGACAGCTACATCCGGTCCAA
GGGCGTGCGCATCCCCGTCGACTCCGTCCGCAGGGCGAGCAAGCTGAGGCTGGCCCTCACCAACCTCGACGACCTCGGCA
GCCTCCCGGCTCCCGGTGTCCCCGGACGAGCTGGACGACTACGTCGCCAACATGATCCGGGAGGTGAACGCGATCGAGGA
TGACTTCCAGAAAGAGAGAGACGAGATCGCCAAGGAGTACTACGCAAAGGGCTACGTCGAGCGCGAGGTCAGCGACGACG
ACGAAGCAGGAGGCAGCAACCCCCGTGTGGAGACCGTT---------------------AGCACCGTAACCGTAAGGAAG
CTCAACTGAACGAGCACCATTATCAGACTGTCCCTGATCTCGATCGGCGGTGCTTTCGAATAAATCGTCAGTCTGATAAA
CGATGGATTCAATGGTATGAGCGCTCCTATAGCGCAATAATAAAATTTCACTATATCGGCAGCAATCATTTTTTCTTCTT
CATCATCCTTTTTGAATCATTGATCTAGAGTAGTTGATTTGTTTGACTCAGCTTGTATTAAATGGTTGTGCTATGTATTC
CGTTTGGTCTGACGGTCACTTGATCTAATTTTAAACATATGAGGACCGCACGGTGAGCAAATTTACATTTTCTGCTGTAA
ATACTAAGTTCATTTAGTTGCACTAGGATATTGTTTTTACCATCTGGTACCTTCACCTTCTATGGTCGAGGAGCTCGTGT
CATGGACGGTTGATTTCATGGTGGAGCTCTGGTTTGCACCATCAATCTCTAGAAGACGTCAATACTGCAAAGAATGGGTG
ATCCGAATCCAGCGGTGCTCTAGCGAGCCAGACTGATCACCAACAAGCTCTAACTTGTGGGAGCTAATGTTTCCAATCAC
TAGTAGAAAACAGGGCTTTGGTCCAGGCCGGGTCAGCCCATTAGTCCCGGTTCAGTCCAGAACCGGGACCAATGGGGGCA
TTGGTCCCGGTTCGTGAGCCCAGGGGGCTGCCCGGGCCACGTGGGCCATTGGTTCCGGTTCATCTGAACCTTTTGGTCCC
GATTGGTGGGATGAACCGGGACCAATGGGCCTCGCTCCTGGCCCACAATCATTGGTCCCGGTTCGTGTCTCAAACCGGGA
CTAAAGATTAGACCTGTAGTCCCGGTTTGAGGCACGAACCGGGACTAATGGGGTTGAGAACTTTAGTCCCGGTTCGTGCC
ACGAACCGGTACTAAAGGTCTCATTTTCAAACTCTACCCCCCCCGGATCGCCTTTTCAGTTTTTTTAAAAATAAAATAAA
ATGATGGAAATGTCAAAAAAATAAAAGAAAATAAGTTTCCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTGCAAAT
GTGAATTTTGACTTTATTTGCAAAATCTCTCTGAAATTTGTAAAAATGGGCATAACTTTTGCATACTAACTCGGATGAAA
AAGTTTTTTATATGAACAATCATCTACTCGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAGAAAAATTCAAACAGTGGGCAAACTGTGGTCAAACAATGGTCAAACTAATTATTTTAGAATATT
AGTGTTACTAAATAATTATTTCAGTTATTTCAATTTTGGTCAAATCTGGTCAAACTGTGGTCAAACAATGGTCAAACTAG
TTATTCAAGAAATATTAGTGTTACTAAATAATTATTGTTTTTTAAAACAATAGTTTCAAAATAAAACTATGAAATGTGTC
ACTTCATGCTCAAGCAAAATTCCTGAAGGTTAATAGGATTGACATCTTAGTATTGTCAGGAAAACAACAAGTGCAGACTT
GGAGCGAGGGAGAATAGAACTCGGAAGTTAAGCGTGCTCAGGCTGGGGGAGTGGGAGGATGGGTGACCGTTCGGGAAGTT
AGATGATTTGAAATGATGAGGGATGATTAGAGGATAAATTGAGAAGTGATGAGGGGTGGTGATTACAGACTAGAGGTTAA
AATAATTCAGAAATTTGAAAATAAAAAAAATTCAAAAAAAGTTTCAAAAAAAATCATAAAATTTTCTTTAGTCCCGGTTG
GTGTTACCAACCGGGACTAAAGGTGGAGCTCCACGTGACCACGCCCTTTAGTCCCGGTTCTGGATTGAACCAGGACTAAA
GGGAGAGGCATTAGTACCGACCCTTTAGTCCCGGTTTCAGAACCGGGACTAAAGGCCCTTATGAACCGGGACTGAAGGCC
CTTTTTCTACTAGTGAATGTTAACGATTGTTGAGATAATGGTCGCTCTTGAGCTAG-------AATCCACGAGCGCTAAT
GCCTCCAATGTTAGCGGCGAGAGATTGGAGACATATTGATCAGCAATGAGTCGAAACCGGCGATCGCTAATGCCTCCAAT
GTTGGAGGTGCGAGATAAGCGGATTTATGTTTTTTTATTTATGGTGTGTACGCCATCTCAACATGCTAGGGGGAGGGGG-
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---GGGGGTATGGTGTTCTTTGTG------------------------------------------------AACACATG
GGGTTTAAGTTGCTATGTTTTCTCATTGCGTTTCAAGAGGGCTGTTTCTATGTTGTATGTTTA---TTTCATTGCTGCAC
ATGCCATTTCTAAATGTTGCTTACTTTTGATTTTCCGGTTGCATCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--------S--S----S------------
----------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
--------------SS-----------------S------------------SSSSSSS-----S-------SS------
--S----SS------S---S--------S-S--S-S-------------------------------------SSSS-SS
SSSSS----------------------------SS--------S----S----S----S---S----SS-----SS--SS
S-SSSSSSS--SSSSSS---------------------------------------------------------------
--------S--S-------S-S-SSS-----------------------------------------------------S
--------------SSS-S-SS-S--SSSSSSSSS---S---S-S-----------------------------------
---------------------------S---------------------------------------S------------
-------------------------------------------------------------------SS----------S
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------------S-------------------S-----------------------------------------------
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-----------------------------S--------------------------------------------------
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------------S-------S------------------------------SSS--------------------------
------------------------------------------------S-------------------------------
----------------------------------------S----S----------------------------------
----------------------S---------------------------------------------------------
-----S------S---------------------------S----------------S-S--------------------
--------------------------------------------------------S-----------------------
------S-----------------------------------------------------------------S-------
-------------S-------------------------------------------------S-----S----------
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---------------------S-----SS----------------SS--------SSSSSSSS-----------------
--S----------------------S-S--------------------------------S-------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
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------S-------------------------------------------------------------------------
----------------------------------S---------------------------------------------
-----------------------------------S----------
>forward_130
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------------------------------AACTCTTGGCTTGGGTTGCT------------------------------
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>reverse_3739
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----------------------------------------------------------TCCAAAATCCACGAGCGCTA--
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