Multiple sequence alignment - TraesCS2D01G354700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G354700 chr2D 100.000 2672 0 0 1 2672 455519698 455517027 0.000000e+00 4935.0
1 TraesCS2D01G354700 chr2D 78.022 273 38 18 1247 1513 427898359 427898615 4.610000e-33 152.0
2 TraesCS2D01G354700 chr2D 78.022 273 38 17 1247 1513 427932974 427933230 4.610000e-33 152.0
3 TraesCS2D01G354700 chr2D 83.221 149 20 4 1369 1513 427915591 427915738 6.000000e-27 132.0
4 TraesCS2D01G354700 chr2D 78.673 211 30 11 1307 1513 427753802 427754001 2.790000e-25 126.0
5 TraesCS2D01G354700 chr2D 83.721 86 3 5 154 228 110837631 110837546 1.330000e-08 71.3
6 TraesCS2D01G354700 chr2A 94.231 1508 66 12 676 2165 595225461 595226965 0.000000e+00 2283.0
7 TraesCS2D01G354700 chr2A 92.493 706 30 10 1 684 595223996 595224700 0.000000e+00 989.0
8 TraesCS2D01G354700 chr2A 94.318 264 12 2 2412 2672 595227353 595227616 4.140000e-108 401.0
9 TraesCS2D01G354700 chr2A 77.561 410 61 23 1117 1515 559670059 559669670 4.480000e-53 219.0
10 TraesCS2D01G354700 chr2A 95.041 121 4 2 2245 2364 595227221 595227340 3.510000e-44 189.0
11 TraesCS2D01G354700 chr2A 77.289 273 40 18 1247 1513 559829505 559829249 9.970000e-30 141.0
12 TraesCS2D01G354700 chr2A 94.737 57 3 0 2181 2237 595227076 595227132 3.660000e-14 89.8
13 TraesCS2D01G354700 chr2B 90.149 1543 106 27 708 2237 536621090 536619581 0.000000e+00 1965.0
14 TraesCS2D01G354700 chr2B 89.176 425 21 4 2251 2672 536619501 536619099 8.540000e-140 507.0
15 TraesCS2D01G354700 chr2B 77.805 410 60 22 1117 1515 512355091 512354702 9.630000e-55 224.0
16 TraesCS2D01G354700 chr2B 77.372 411 60 24 1117 1515 504773497 504773886 2.080000e-51 213.0
17 TraesCS2D01G354700 chr2B 73.201 556 105 34 1021 1557 504748232 504748762 7.650000e-36 161.0
18 TraesCS2D01G354700 chr2B 75.949 316 50 20 1247 1557 512372421 512372127 3.590000e-29 139.0
19 TraesCS2D01G354700 chr5A 80.208 96 18 1 96 190 444557106 444557201 1.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G354700 chr2D 455517027 455519698 2671 True 4935.00 4935 100.0000 1 2672 1 chr2D.!!$R2 2671
1 TraesCS2D01G354700 chr2A 595223996 595227616 3620 False 790.36 2283 94.1640 1 2672 5 chr2A.!!$F1 2671
2 TraesCS2D01G354700 chr2B 536619099 536621090 1991 True 1236.00 1965 89.6625 708 2672 2 chr2B.!!$R3 1964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 1.063327 CAGGCTCGACGCTGACTAG 59.937 63.158 6.78 0.0 39.13 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2767 0.178981 ACTGCAACCCTGAAGCATGT 60.179 50.0 0.0 0.0 37.68 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.674651 ACAGGCTCGACGCTGACTA 60.675 57.895 7.79 0.00 39.13 2.59
20 21 1.063327 CAGGCTCGACGCTGACTAG 59.937 63.158 6.78 0.00 39.13 2.57
91 92 2.574399 GAGGACGACCAGGCTGAC 59.426 66.667 17.94 8.79 38.94 3.51
92 93 2.997897 AGGACGACCAGGCTGACC 60.998 66.667 17.94 10.77 38.94 4.02
93 94 4.083862 GGACGACCAGGCTGACCC 62.084 72.222 17.94 5.51 36.11 4.46
121 122 3.968265 CCTCCATGGTTTGGTAATGACT 58.032 45.455 12.58 0.00 46.52 3.41
140 141 3.330267 ACTCGTTGAGATTTGAAGGCTC 58.670 45.455 0.00 0.00 33.32 4.70
218 219 7.377766 AGTATACATGTACTTTGCAACCAAG 57.622 36.000 7.96 0.00 30.95 3.61
272 275 6.318900 GGCTACAAGTTCTAGTTTATTGCCAT 59.681 38.462 0.00 0.00 34.82 4.40
273 276 7.148069 GGCTACAAGTTCTAGTTTATTGCCATT 60.148 37.037 0.00 0.00 34.82 3.16
317 322 2.420628 TGCATTTTTGTCAAGCTCCG 57.579 45.000 0.00 0.00 0.00 4.63
323 328 1.165907 TTTGTCAAGCTCCGCCACTG 61.166 55.000 0.00 0.00 0.00 3.66
369 374 5.165961 TCCTCATAGCACCATAATTAGGC 57.834 43.478 0.00 0.00 0.00 3.93
409 414 2.131972 TCCGACGTCAATGACACAAAG 58.868 47.619 17.16 0.00 32.09 2.77
518 523 5.399013 GGTTGTTGCATACACTCCATTTAC 58.601 41.667 0.00 0.00 36.21 2.01
538 543 2.969238 GGGATGCATGAGGACGCG 60.969 66.667 2.46 3.53 0.00 6.01
567 572 3.958822 GACGTCCGCGGTCATTCGT 62.959 63.158 27.15 25.28 43.45 3.85
569 574 2.431942 GTCCGCGGTCATTCGTGT 60.432 61.111 27.15 0.00 38.78 4.49
590 595 8.455682 TCGTGTCTCCAAAAATAAACCAATATC 58.544 33.333 0.00 0.00 0.00 1.63
598 603 9.218440 CCAAAAATAAACCAATATCTGTTGCTT 57.782 29.630 0.00 0.00 0.00 3.91
906 1703 6.183361 CCCATACCCAATACCTTCCATCTTAA 60.183 42.308 0.00 0.00 0.00 1.85
1178 1976 4.366684 CCCCTTCCACCCCAGCAC 62.367 72.222 0.00 0.00 0.00 4.40
1595 2393 2.513204 CGAGGAGGACGACGGCTA 60.513 66.667 0.00 0.00 0.00 3.93
1596 2394 2.821688 CGAGGAGGACGACGGCTAC 61.822 68.421 0.00 0.00 0.00 3.58
1600 2398 0.745845 GGAGGACGACGGCTACTACA 60.746 60.000 0.00 0.00 0.00 2.74
1616 2414 1.030488 TACAGCGAAGAGGACCGGAG 61.030 60.000 9.46 0.00 0.00 4.63
1706 2507 4.467084 CGGGTGTGGGGATCGTGG 62.467 72.222 0.00 0.00 0.00 4.94
1777 2584 0.463295 CAATCCAGGATCGCTGCTGT 60.463 55.000 1.11 0.00 39.06 4.40
1780 2587 2.104859 CCAGGATCGCTGCTGTGTG 61.105 63.158 7.02 0.00 39.06 3.82
1785 2592 0.848942 GATCGCTGCTGTGTGTATCG 59.151 55.000 3.96 0.00 0.00 2.92
1787 2594 0.456142 TCGCTGCTGTGTGTATCGTC 60.456 55.000 3.96 0.00 0.00 4.20
1789 2596 0.108615 GCTGCTGTGTGTATCGTCCT 60.109 55.000 0.00 0.00 0.00 3.85
1792 2599 1.616374 TGCTGTGTGTATCGTCCTGAA 59.384 47.619 0.00 0.00 0.00 3.02
1806 2619 6.241207 TCGTCCTGAAAGCTTTTGATTTAG 57.759 37.500 14.05 5.54 38.24 1.85
1807 2620 4.853743 CGTCCTGAAAGCTTTTGATTTAGC 59.146 41.667 14.05 0.00 38.24 3.09
1816 2629 4.941263 AGCTTTTGATTTAGCGTACATGGA 59.059 37.500 0.00 0.00 42.18 3.41
1821 2634 5.651172 TGATTTAGCGTACATGGATTTCG 57.349 39.130 0.00 0.00 0.00 3.46
1822 2635 5.353111 TGATTTAGCGTACATGGATTTCGA 58.647 37.500 0.00 0.00 0.00 3.71
1844 2658 0.238289 GTGCAGTCATCACCAAACCG 59.762 55.000 0.00 0.00 0.00 4.44
1845 2659 1.210155 GCAGTCATCACCAAACCGC 59.790 57.895 0.00 0.00 0.00 5.68
1884 2699 4.062677 AGAGCTGAGAATCTGAATCTGC 57.937 45.455 0.00 5.93 35.94 4.26
1897 2712 0.652592 AATCTGCACGTATCTTGCGC 59.347 50.000 0.00 0.00 43.34 6.09
1908 2723 1.303799 ATCTTGCGCTGGTTCTGCAG 61.304 55.000 7.63 7.63 40.15 4.41
1918 2736 3.863400 GCTGGTTCTGCAGCATTTTGATT 60.863 43.478 9.47 0.00 43.40 2.57
1937 2755 6.330004 TGATTTGCTTGCTCTTGTATGAAA 57.670 33.333 0.00 0.00 0.00 2.69
1938 2756 6.927416 TGATTTGCTTGCTCTTGTATGAAAT 58.073 32.000 0.00 0.00 0.00 2.17
1942 2760 7.452880 TTGCTTGCTCTTGTATGAAATAGTT 57.547 32.000 0.00 0.00 0.00 2.24
1943 2761 7.076842 TGCTTGCTCTTGTATGAAATAGTTC 57.923 36.000 0.00 0.00 0.00 3.01
1946 2764 7.615582 TTGCTCTTGTATGAAATAGTTCAGG 57.384 36.000 11.67 0.22 46.75 3.86
1948 2766 7.394016 TGCTCTTGTATGAAATAGTTCAGGAA 58.606 34.615 11.67 3.39 46.75 3.36
1949 2767 7.882791 TGCTCTTGTATGAAATAGTTCAGGAAA 59.117 33.333 11.67 4.64 46.75 3.13
2008 2829 7.016361 AGTAGCAGTTTGTTTGTAAGAGTTG 57.984 36.000 0.00 0.00 0.00 3.16
2015 2836 8.447833 CAGTTTGTTTGTAAGAGTTGTTCACTA 58.552 33.333 0.00 0.00 35.01 2.74
2016 2837 8.665685 AGTTTGTTTGTAAGAGTTGTTCACTAG 58.334 33.333 0.00 0.00 35.01 2.57
2017 2838 6.598753 TGTTTGTAAGAGTTGTTCACTAGC 57.401 37.500 0.00 0.00 35.01 3.42
2028 2849 5.645497 AGTTGTTCACTAGCCAATTCTCATC 59.355 40.000 0.00 0.00 31.97 2.92
2029 2850 4.183865 TGTTCACTAGCCAATTCTCATCG 58.816 43.478 0.00 0.00 0.00 3.84
2031 2852 4.046938 TCACTAGCCAATTCTCATCGTC 57.953 45.455 0.00 0.00 0.00 4.20
2046 2867 4.105486 TCATCGTCGATGCAGAGTAAAAG 58.895 43.478 26.86 2.77 39.63 2.27
2075 2896 1.988107 TCCCCAATCAACTCTCTGCTT 59.012 47.619 0.00 0.00 0.00 3.91
2089 2910 6.674573 ACTCTCTGCTTAGTAATCCTTCCTA 58.325 40.000 0.00 0.00 0.00 2.94
2095 2916 5.163405 TGCTTAGTAATCCTTCCTAGTGCAG 60.163 44.000 0.00 0.00 0.00 4.41
2176 2997 2.022195 CCTGCAACATCAGCTGCTAAT 58.978 47.619 9.47 0.00 37.71 1.73
2228 3144 6.207417 TGCGATTTCTTTTCCAGAATCTTCTT 59.793 34.615 0.00 0.00 41.42 2.52
2231 3147 7.748241 CGATTTCTTTTCCAGAATCTTCTTGTC 59.252 37.037 0.00 0.00 41.42 3.18
2237 3153 5.932619 TCCAGAATCTTCTTGTCGGAATA 57.067 39.130 0.00 0.00 34.74 1.75
2239 3155 6.106673 TCCAGAATCTTCTTGTCGGAATAAC 58.893 40.000 0.00 0.00 34.74 1.89
2240 3156 6.070767 TCCAGAATCTTCTTGTCGGAATAACT 60.071 38.462 0.00 0.00 34.74 2.24
2241 3157 7.123697 TCCAGAATCTTCTTGTCGGAATAACTA 59.876 37.037 0.00 0.00 34.74 2.24
2278 3279 4.337274 TGCATATCCAAGTTCTGAATGCAG 59.663 41.667 6.88 0.00 38.98 4.41
2293 3294 5.342433 TGAATGCAGTTGACAGTTCAAAAG 58.658 37.500 0.00 0.00 43.52 2.27
2314 3315 4.780815 AGAATTATGGCGTGATCCTCAAA 58.219 39.130 0.00 0.00 0.00 2.69
2359 3360 2.825086 AGAAAATTACGCGTGCATCC 57.175 45.000 24.59 6.63 0.00 3.51
2367 3368 3.422303 GCGTGCATCCAAGCGTCA 61.422 61.111 0.00 0.00 36.76 4.35
2390 3391 2.348998 CAAGCCAAGCCTCCGTCT 59.651 61.111 0.00 0.00 0.00 4.18
2391 3392 1.743252 CAAGCCAAGCCTCCGTCTC 60.743 63.158 0.00 0.00 0.00 3.36
2392 3393 3.302347 AAGCCAAGCCTCCGTCTCG 62.302 63.158 0.00 0.00 0.00 4.04
2394 3395 4.821589 CCAAGCCTCCGTCTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
2395 3396 3.764466 CAAGCCTCCGTCTCGCCT 61.764 66.667 0.00 0.00 0.00 5.52
2396 3397 3.453679 AAGCCTCCGTCTCGCCTC 61.454 66.667 0.00 0.00 0.00 4.70
2400 3401 3.878519 CTCCGTCTCGCCTCCGTC 61.879 72.222 0.00 0.00 35.54 4.79
2429 3430 5.404366 GCACGACAAACTTCTAACTCATGTA 59.596 40.000 0.00 0.00 0.00 2.29
2431 3432 6.641314 CACGACAAACTTCTAACTCATGTAGT 59.359 38.462 0.00 0.00 41.49 2.73
2461 3465 4.213564 AGCGAAATCAGTCAAAGGAGAT 57.786 40.909 0.00 0.00 0.00 2.75
2462 3466 4.187694 AGCGAAATCAGTCAAAGGAGATC 58.812 43.478 0.00 0.00 0.00 2.75
2471 3475 6.013379 TCAGTCAAAGGAGATCACTAACTCT 58.987 40.000 0.00 0.00 34.11 3.24
2522 3526 2.520500 TGCGGGGCTTTGCTTTCA 60.521 55.556 0.00 0.00 0.00 2.69
2570 3574 1.151587 AGGTTGTCCATCACCCCCT 60.152 57.895 0.00 0.00 35.89 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.753043 GTCCTCCCTACACGGCGA 60.753 66.667 16.62 0.00 0.00 5.54
121 122 3.401033 TGAGCCTTCAAATCTCAACGA 57.599 42.857 0.00 0.00 34.30 3.85
140 141 6.986231 TGTCTACTTGGATGCATATACTGTTG 59.014 38.462 0.00 0.00 0.00 3.33
193 194 8.315482 TCTTGGTTGCAAAGTACATGTATACTA 58.685 33.333 9.18 0.00 34.18 1.82
247 250 5.646360 TGGCAATAAACTAGAACTTGTAGCC 59.354 40.000 0.00 0.00 36.50 3.93
288 292 0.542805 CAAAAATGCATGGGGAGGGG 59.457 55.000 0.00 0.00 0.00 4.79
298 303 2.420628 CGGAGCTTGACAAAAATGCA 57.579 45.000 0.00 0.00 0.00 3.96
323 328 1.603739 GGACCAAACCACTGGCCTC 60.604 63.158 3.32 0.00 40.45 4.70
369 374 1.224075 TCTAACGATCGCCTCCTACG 58.776 55.000 16.60 0.00 0.00 3.51
409 414 2.191981 TCCCCTCCCTCAACCTTATC 57.808 55.000 0.00 0.00 0.00 1.75
518 523 1.227764 CGTCCTCATGCATCCCTGG 60.228 63.158 0.00 0.00 0.00 4.45
559 564 6.581166 GGTTTATTTTTGGAGACACGAATGAC 59.419 38.462 0.00 0.00 42.67 3.06
567 572 9.308000 ACAGATATTGGTTTATTTTTGGAGACA 57.692 29.630 0.00 0.00 39.83 3.41
590 595 9.065871 GTATTAGCACATTTAGAAAAGCAACAG 57.934 33.333 0.00 0.00 0.00 3.16
651 674 4.039973 CCACTAAGTCCACAACAGTCCTTA 59.960 45.833 0.00 0.00 0.00 2.69
652 675 3.181454 CCACTAAGTCCACAACAGTCCTT 60.181 47.826 0.00 0.00 0.00 3.36
698 1490 1.264288 GTGGTTCTTGCTCGAAGGTTG 59.736 52.381 0.00 0.00 31.85 3.77
699 1491 1.134220 TGTGGTTCTTGCTCGAAGGTT 60.134 47.619 0.00 0.00 31.85 3.50
700 1492 0.468226 TGTGGTTCTTGCTCGAAGGT 59.532 50.000 0.00 0.00 31.85 3.50
701 1493 1.813513 ATGTGGTTCTTGCTCGAAGG 58.186 50.000 0.00 0.00 31.85 3.46
702 1494 3.904136 AAATGTGGTTCTTGCTCGAAG 57.096 42.857 0.00 0.00 0.00 3.79
703 1495 4.379394 GCATAAATGTGGTTCTTGCTCGAA 60.379 41.667 0.00 0.00 0.00 3.71
704 1496 3.126858 GCATAAATGTGGTTCTTGCTCGA 59.873 43.478 0.00 0.00 0.00 4.04
706 1498 4.439305 TGCATAAATGTGGTTCTTGCTC 57.561 40.909 0.00 0.00 32.07 4.26
827 1622 2.287909 CGGGATTTTCCGTTGAAGCAAA 60.288 45.455 0.00 0.00 44.60 3.68
906 1703 0.846870 CTTTGGAGGGGAGAGGGGTT 60.847 60.000 0.00 0.00 0.00 4.11
1269 2067 4.570663 CCCTTCTCGCGGCCGTAG 62.571 72.222 28.70 23.59 35.54 3.51
1464 2262 2.109126 GCAGTCCATGTCCGCCTTC 61.109 63.158 0.00 0.00 0.00 3.46
1571 2369 4.477975 CGTCCTCCTCGTCCACGC 62.478 72.222 0.00 0.00 39.60 5.34
1573 2371 2.876219 GTCGTCCTCCTCGTCCAC 59.124 66.667 0.00 0.00 0.00 4.02
1595 2393 1.313812 CCGGTCCTCTTCGCTGTAGT 61.314 60.000 0.00 0.00 0.00 2.73
1596 2394 1.030488 TCCGGTCCTCTTCGCTGTAG 61.030 60.000 0.00 0.00 0.00 2.74
1600 2398 2.756283 CCTCCGGTCCTCTTCGCT 60.756 66.667 0.00 0.00 0.00 4.93
1777 2584 3.678056 AAGCTTTCAGGACGATACACA 57.322 42.857 0.00 0.00 0.00 3.72
1780 2587 5.803020 ATCAAAAGCTTTCAGGACGATAC 57.197 39.130 13.10 0.00 0.00 2.24
1785 2592 4.853743 CGCTAAATCAAAAGCTTTCAGGAC 59.146 41.667 13.10 0.00 36.56 3.85
1787 2594 4.798574 ACGCTAAATCAAAAGCTTTCAGG 58.201 39.130 13.10 5.67 36.56 3.86
1789 2596 6.307031 TGTACGCTAAATCAAAAGCTTTCA 57.693 33.333 13.10 2.48 36.56 2.69
1792 2599 5.414454 TCCATGTACGCTAAATCAAAAGCTT 59.586 36.000 0.00 0.00 36.56 3.74
1806 2619 3.120991 GCACTATCGAAATCCATGTACGC 60.121 47.826 0.00 0.00 0.00 4.42
1807 2620 4.048504 TGCACTATCGAAATCCATGTACG 58.951 43.478 0.00 0.00 0.00 3.67
1816 2629 4.122776 GGTGATGACTGCACTATCGAAAT 58.877 43.478 0.00 0.00 36.53 2.17
1821 2634 3.375299 GGTTTGGTGATGACTGCACTATC 59.625 47.826 0.00 0.00 36.53 2.08
1822 2635 3.347216 GGTTTGGTGATGACTGCACTAT 58.653 45.455 0.00 0.00 36.53 2.12
1884 2699 0.370273 GAACCAGCGCAAGATACGTG 59.630 55.000 11.47 0.00 43.02 4.49
1897 2712 3.587797 ATCAAAATGCTGCAGAACCAG 57.412 42.857 20.43 1.81 35.93 4.00
1908 2723 4.212636 ACAAGAGCAAGCAAATCAAAATGC 59.787 37.500 0.00 0.00 42.87 3.56
1918 2736 7.174772 TGAACTATTTCATACAAGAGCAAGCAA 59.825 33.333 0.00 0.00 36.79 3.91
1937 2755 4.946157 CCTGAAGCATGTTTCCTGAACTAT 59.054 41.667 18.27 0.00 39.08 2.12
1938 2756 4.326826 CCTGAAGCATGTTTCCTGAACTA 58.673 43.478 18.27 0.00 39.08 2.24
1942 2760 1.425066 ACCCTGAAGCATGTTTCCTGA 59.575 47.619 18.27 0.74 0.00 3.86
1943 2761 1.915141 ACCCTGAAGCATGTTTCCTG 58.085 50.000 18.27 11.41 0.00 3.86
1944 2762 2.242043 CAACCCTGAAGCATGTTTCCT 58.758 47.619 18.27 0.00 0.00 3.36
1946 2764 1.340889 TGCAACCCTGAAGCATGTTTC 59.659 47.619 14.76 14.76 32.55 2.78
1948 2766 0.963962 CTGCAACCCTGAAGCATGTT 59.036 50.000 0.00 0.00 37.68 2.71
1949 2767 0.178981 ACTGCAACCCTGAAGCATGT 60.179 50.000 0.00 0.00 37.68 3.21
2008 2829 4.184629 ACGATGAGAATTGGCTAGTGAAC 58.815 43.478 0.00 0.00 0.00 3.18
2015 2836 2.477825 CATCGACGATGAGAATTGGCT 58.522 47.619 29.63 0.00 42.09 4.75
2016 2837 1.070309 GCATCGACGATGAGAATTGGC 60.070 52.381 35.61 17.45 42.09 4.52
2017 2838 2.204237 TGCATCGACGATGAGAATTGG 58.796 47.619 35.61 11.90 42.09 3.16
2028 2849 1.324736 GGCTTTTACTCTGCATCGACG 59.675 52.381 0.00 0.00 0.00 5.12
2029 2850 1.666189 GGGCTTTTACTCTGCATCGAC 59.334 52.381 0.00 0.00 0.00 4.20
2031 2852 1.017387 GGGGCTTTTACTCTGCATCG 58.983 55.000 0.00 0.00 0.00 3.84
2046 2867 1.863155 TTGATTGGGGACAGAGGGGC 61.863 60.000 0.00 0.00 44.54 5.80
2075 2896 5.395324 GCAACTGCACTAGGAAGGATTACTA 60.395 44.000 0.00 0.00 39.96 1.82
2095 2916 2.029649 ACCAGCATCACATTTCTGCAAC 60.030 45.455 0.00 0.00 38.37 4.17
2228 3144 5.105513 TGCTCACTGATTAGTTATTCCGACA 60.106 40.000 0.00 0.00 34.07 4.35
2231 3147 7.412346 GCATATGCTCACTGATTAGTTATTCCG 60.412 40.741 20.64 0.00 34.67 4.30
2237 3153 7.551974 GGATATGCATATGCTCACTGATTAGTT 59.448 37.037 25.92 0.00 42.66 2.24
2239 3155 7.046033 TGGATATGCATATGCTCACTGATTAG 58.954 38.462 30.68 0.00 42.66 1.73
2240 3156 6.949715 TGGATATGCATATGCTCACTGATTA 58.050 36.000 30.68 11.21 42.66 1.75
2241 3157 5.812286 TGGATATGCATATGCTCACTGATT 58.188 37.500 30.68 4.01 42.66 2.57
2278 3279 6.088085 CGCCATAATTCTTTTGAACTGTCAAC 59.912 38.462 0.00 0.00 43.52 3.18
2341 3342 2.535934 TGGATGCACGCGTAATTTTC 57.464 45.000 13.44 4.84 0.00 2.29
2350 3351 3.422303 TGACGCTTGGATGCACGC 61.422 61.111 5.56 5.56 0.00 5.34
2359 3360 0.040958 GGCTTGTGAAGTGACGCTTG 60.041 55.000 5.87 0.00 37.59 4.01
2367 3368 0.538287 GGAGGCTTGGCTTGTGAAGT 60.538 55.000 0.00 0.00 0.00 3.01
2398 3399 3.351416 GTTTGTCGTGCCGGGGAC 61.351 66.667 8.86 8.86 0.00 4.46
2399 3400 2.999739 GAAGTTTGTCGTGCCGGGGA 63.000 60.000 2.18 0.00 0.00 4.81
2400 3401 2.593436 AAGTTTGTCGTGCCGGGG 60.593 61.111 2.18 0.00 0.00 5.73
2401 3402 0.320073 TAGAAGTTTGTCGTGCCGGG 60.320 55.000 2.18 0.00 0.00 5.73
2402 3403 1.193874 GTTAGAAGTTTGTCGTGCCGG 59.806 52.381 0.00 0.00 0.00 6.13
2403 3404 2.132762 AGTTAGAAGTTTGTCGTGCCG 58.867 47.619 0.00 0.00 0.00 5.69
2404 3405 3.128349 TGAGTTAGAAGTTTGTCGTGCC 58.872 45.455 0.00 0.00 0.00 5.01
2405 3406 4.211374 ACATGAGTTAGAAGTTTGTCGTGC 59.789 41.667 0.00 0.00 0.00 5.34
2406 3407 5.907197 ACATGAGTTAGAAGTTTGTCGTG 57.093 39.130 0.00 0.00 0.00 4.35
2407 3408 6.746120 ACTACATGAGTTAGAAGTTTGTCGT 58.254 36.000 0.00 0.00 33.13 4.34
2408 3409 8.912787 ATACTACATGAGTTAGAAGTTTGTCG 57.087 34.615 0.00 0.00 39.81 4.35
2409 3410 9.856488 TGATACTACATGAGTTAGAAGTTTGTC 57.144 33.333 0.00 0.00 39.81 3.18
2429 3430 5.536538 TGACTGATTTCGCTAGGATGATACT 59.463 40.000 0.00 0.00 0.00 2.12
2431 3432 6.405278 TTGACTGATTTCGCTAGGATGATA 57.595 37.500 0.00 0.00 0.00 2.15
2461 3465 1.954382 ACGCAGTCACAGAGTTAGTGA 59.046 47.619 0.00 0.00 43.23 3.41
2462 3466 2.054363 CACGCAGTCACAGAGTTAGTG 58.946 52.381 0.00 0.00 41.61 2.74
2471 3475 1.374631 GATGAGCCACGCAGTCACA 60.375 57.895 0.00 0.00 41.61 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.