>input_sequence_72158
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-------------------------------------ATGGCAACGGCCGTGCGGAGTCTGCCGCCGGGCCACGCGTTCG
AGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCCCGGGGCACGTCGCG
GAGGGCGTGGACGTCTTCGCCGCGAGCCCCGCGGCGCTCCCCTTCCACCCCAGCACCAGGCGGCGGCACGGGGAGGCGTG
GGGCTACTTCTACGGCGCCCAGGCCAGCGGCGACGCGCTGCCTGCGCCGGGCGGGTGCTGGGCGCGCTACGGCCGCGAGA
AGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGAAGCAGGTTCGCGTTCCACGTGCCGCGGCTG
GGCGGCGACGGCGGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAGGGCGCGGCCGCCTT
CCGCGCCGCGCAGCCCGGCCCGAAGGCGGACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGCCGGTGGTGGCGCCCC
CTCCGCCGCCGGCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCTCGGCGTGGACGAGGAGGACGACGGCTACTACAGC
GAAGAGGACCGGAGGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGCGGAAGCGCGCTCGACCTAGCTGA-----------
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>chr2D_1_TraesCS2D01G354700
CACAGGCTCGACGCTGACTAGCGAAGAGCTCCAATTCTGGGCCACGCGTGTAGCCGGCGACATCGCCGTGTAGGGAGGAC
GACCAGGCTGACCCGTAGAACCTCCATGGTTTGGTAATGACTCGTTGAGATTTGAAGGCTCAACAGTATATGCATCCAAG
TAGACAAGATGTATGTTTTGGTCTAGTTTTTTTTAGTATACATGTACTTTGCAACCAAGATAGGTAATGTAAATATAAC-
-TGTCTTAAGGCTACAAGTTCTAGTTTATTGCCATTAAA-TTTTTTGCCCCCCC-CTCCCCATGCATTTTTGTCAAGCTC
CGCCACTGAGGCCAGTGGTTTGGTCCTCGACTCCTCATAGCACCATAATTAGGCGTAGGAGGCGATCGTTAGATCCGACG
TCAATGACACAAAGATAAGGTTGAGGGAGGGGAAGAGCATTGGGTAGTGTTAATGTGGTCGAAAATGAGTCGTCGAAACC
ATACCAGGTGGTGTAACTGGGTTGTTGCATACACTCCATTTACCAGGGATGCATGAGGACGCGGACGCGTCCCGACGTCC
GCGGTCATTCGTGTCTCCAAAAATAAACCAATATCTGTTGCTTTTCTAAATGTGCTAATACAAATATGCTCTTTTTTT--
----------------AGAGGAAATATTTTTTTTAAGGACTGTTGTGGACTTAGTGG-----------------------
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--------------------------ACTTGTTCACTTGCATCCCTATGCAACCTTCG---AGCAAGAACCACATTTATG
CATGTATGTATGCGACTTGTATTTTCTTTTTTCGAAAGAGATATGATTTACATTTCCTGATTTTAGTCGACATGTTACCT
TTTTTGAGATGGAGATGTTTTTTT--GCTTCAACGGAAAATCCCGTTAAGGACAGAAAATTGATGATAGCTCATCGCCCC
ATACCCAATACCTTCCATCTTAAACCCCTCTCCCCTCCAAAGTCCAAACCACCCGAACTTCCCTAACAAACTTCCACCCT
CGATTCATCTCGGCCAGAAGCTCG-TTCTTGGCGGCAATGGCAACGGCCGTGCGGAGTCTGCCGCCGGGCCACGCGTTCG
AGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCCCGGGGCACGTCGCG
GAGGGCGTGGACGTCTTCGCCGCGAGCCCCGCGGCGCTCCCCTTCCACCCCAGCACCAGGCGGCGGCACGGGGAGGCGTG
GGGCTACTTCTACGGCGCCCAGGCCAGCGGCGACGCGCTGCCTGCGCCGGGCGGGTGCTGGGCGCGCTACGGCCGCGAGA
AGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGAAGCAGGTTCGCGTTCCACGTGCCGCGGCTG
GGCGGCGACGGCGGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAGGGCGCGGCCGCCTT
CCGCGCCGCGCAGCCCGGCCCGAAGGCGGACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGCCGGTGGTGGCGCCCC
CTCCGCCGCCGGCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCTCGGCGTGGACGAGGAGGACGACGGCTACTACAGC
GAAGAGGACCGGAGGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGCGGAAGCGCGCTCGACCTAGCTGATG---CCGACC
GCGCGCGCACGGGTGTGGGGATCGTGGTCCATCCGGACGACTGGCTCGTGTCT------CGCCGCGTTCCATCGGTCATG
AGAACAATCCAGGATCGCTGCTGTGTGTATCGTCCTGAAAGCTTTTGATTTA------GCGTACATGGATTTCGATAG-T
GCAGTCATCACCAAACCGC-AGTTCAGAGAAACTGGTAGAGCTGAGAATCTGAATCTGCACGTATCTTGCGCTGGTTCTG
CAGCATTTT---GATTTGCTTGCTCTTGTATGAAATAGTTCAGGAAAC-ATGCTTCAGGGTTGCAGTTCTCTTGTATGTT
GAAGTAGCAGTTTGTTTGTAAG--AGTTGTTCACTAGCCAATTCTCATCGTCGATGCAGAGTAAAAGCCCCTCTGTCCCC
AATCAACTCTCTGCTTAGTAATCCTTCCTAGTGCAGTTGCAGAAATGTGATGCTGGTCACAGAGGGAACTGTCTTCTGTG
ACCACCTCATCATTTTCCTGCAACATCAGCTGCTAATTGC----------------------------------------
-------------------------------------------------------ATCCACTGCAACAATCTTTTGGTTG
CGATTTCTTTTCCAGAATCTTCTTGTCGGAATAACTAAT-----------------------------------------
--------------------------------------------CAGTGAGCATATGCATATCCAAGTTCTGAATGCAGT
TGACAGTTCAAAAGAATTATGGCGTGATCCTCAAAGTCAAAAAGAGAACAAAAAATGTAAAGAAAATTACGCGTGCATCC
AAGCGTCACTTCACAAGCCAAGCCTCCGTCTCGCCTCCGTCCCCGGCACGACAAACTTCTAACTCATGTAGT--ATCATC
CTAGCGAAATCA-GTCAAAGGAGATCACTAACTCTGTGACTGCGTGGCTCATCGGGTTCAGAAGCTTCTGCGGGGCTTTG
CTTTCACGCTTGCAGTAGGCGGCGTAGCCTTGTTGAGGTTGTCCATCACCCCCTGTTCCATGGAGGCCTTGCTCTTGCGC
TTGCCGTGCGGCCCGTCGTCGGCTCGGGACGGGTCGGGTGCCGCTGGCGCCTTGTGCTTGAACCGGACCAGCAGG
>chr2A_1
CACAGGCTCGACGCTGACTCACGAAGAGCTCCAATTTTGGGCCACGCGTGTAGCCGGCGACAACGCCGTGTAGGGAGGAC
GACCAGGCTGATATGTAGAACCTCCATGGTTTGGTAATGACACGTTGAGATTTGAAGGCTTAACAGTATATGCATCCAAG
TAGACAAGATGTATGTTTTGGTCTAGTTTTTTT-AGTATACATGTACTTTGCAACCAATATAGGTAATGTAAATATAACT
TTGTCTTAATGCTACAAGTTCTAGTTTATTGCCAGAAATTTTTTTTGCGCCTCCTCTCCCCACGCATTTTTGTCAAGCTC
CACCACTTAGGCCAGTGGTTTGGTCCTCGACTCCTCATAGCACCATAATTAGGTGTAGGAGGCGATCGTTAGATCCGACG
TCAATGACACAAATATAAGGTTGAGGGAGGGGAAGAGCATTGGGTAGTGTTAATGTGGTCGAAAATGAGTCGTCGAAACC
ATACCAGGTGGTGTAACTGGGTTGTTGCATACACTCCATTTATCAGGGATGCATGAGGACGCAGACGCGTCCCGACGTCC
GCGATCATTCGCGCCTCCAAAAATAAACCAATATATGTTGCTCTTCTAAATGTGCTAATACAAATATCCTCAACGCGGCT
GTCGTTGACTTTTTTAAGAGGAAATATTTTTTTAGAGGACTGTTGTGGACTTAGTGGACTTGTTCAGGGGCGGAGCTCTG
TTGGGGCCAAACTGGGCTATGGCCCGCCCAGGTTTTTTGCACTTTTAATTTTACCTATGCATCGAAGCAAAGCCCACCTG
CAGCCCAGTAAGCATATGATCGATCCAAAGCGCTCGAGGTCTCTCAGTCGCAAGTCGCCATGCTCTCTCGCACCCAGCCG
GCACGAGCTCCTGCTGTTTCTCACGGCTGCAGCAGGCAGGAGGCAGAGACATCGACGAATCAAGCAACCACTCCATCCAA
TTTCCTTGCAATTACGATTAAGCAAGAGATCACAGCTAATCTAATTTGTTTTCCCAAATACTGAGTTCAACGATGTAGTC
AAATACATCATATAGTCCTGGTTAGATAGTCTGATTGTTCCACTCAATTGAGGGGCATGAATTAGATGAAAATAGTACTA
CATTGTACATCTAATTTTCCTGCAATTGCTTCATTAGATATCCTGATCTTCCACTCAATTGTTCTTTGCATTTTACAAAT
CACAACATATATTTGGTAGCCAAATCACAACATATATTTGGTAGCCATAAGCAATGGTAAGCAAGCTCACTCACACCTAG
AGAAAAATTGATTTGGTTTTCAAAAGAAAAAGGATCATTTCAAAATTCACTTGATATATACATATATTCTCACTCCATCT
TGTAATCCTGTTTTACAGACTAATGAGTATGACTCAGATTTTTTTTTTGAAAAAACAGTGCTCTTCCTTTGTTTGGCCCG
CCCAACATTTTCTTTGAAGCTCCACCACTTGTTCACTTGCATCCCTATGATGTAACCTCCTAGCAAGAACCACATTTATG
CATGTATGTATGCGACTTGTATTTTCTTTTTTCGAAAGAGATATGATTTACATTTCCTGATTTTAGTCGACATGTTACCT
TTTTTGAGATGGAGATGTTTT-TT--GCTTCAACGGGAAATCCCGTTAAGGACAGAAAATTGATGATAGCTCATCGCCCC
ATACCCAATACCTTCCATCTTATACCCCTCTCCCCTCCAAAGTCCAAACCACCCGAACTTCCCTAACAAACTTCCACCCT
CGATTCATCTCGGCCAGAAGCTCG-TTCTTGGCGGCAATGGCAACGGCCGTGCGGAGTCTGCCGCCGGGCCACGCGTTCG
AGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCCCGGGGCACGTCGCG
GAGGGCGTGGACGTCTTCGCCGCGAGCCCCCCGGCGCTCCCCTTCCACCCCAGCAGCAGGCGGCGGCACGGGGAGGCGTG
GGGCTACTTCTATGGCGCCCAGGCCAGCGGCGACGCGCGGCCGGCGCCGGGCGGGTGCTGGGCGCGGTACGGCCGCGAGA
AGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGAAGCAGGTTCGCTTTCCACGTGCCGCGGAAG
GGCTGCGACGGCGGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAGGGCGCGGCCGCTTT
CCGCGCCGCGCAGCCGGGCCCCAAGGCGAACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGCCGGTGGTGGCGGCCC
CTCCGCCGCCGGCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCCCGACATGGACGAGGAGGACGACGGGTGGTACGGC
GAAGAGGACCGGAAGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGAGGAAGCGCGCTCGACCTAGCTGATGATGCCGACC
GAGCGCGCACGGGTGTGGGGATTGTGATCCATCCGGACGACTGGCTCGTGTCT------CGCCGCGTTGCATCGGTCATG
AAAACAATCCAGGATCGCTGCTGCGTTTATCCTTCGGAGAGCTTTTGATTTACAGTAACAGTACATGGGTTTCTGTAGTT
GCAGTCATCACCAAACCCGTAGTTGAGAGAAACTGGTAGAGCCGAGAATCTGAATCTGTACGTATCTTGCATTGGTTCTG
TAACATTTT---GATCTGCTTGCTCTTGTACGAATAGTTCAGGAATCATATGCTTCAGGGTTGCAGTTCTCTTGGATGTT
GAAGTAGCAGCTTGTTTGTAAGAGAGTTTTTCACTTATCAATTCTCATGTT-GATGCAGAGTAAAACCCCCTCTGTCCCC
AATCAACTCTCTGCTAAGTAATCCTTCCTTGTACAATTGCAGAAATGTGATGCTGGTCACAGAGGGAACTGTCTTCTGTG
ACCACCTCATCATTTTCCTGCAACACATTGGTTGCGATTTCAGAAATTGCAGAAATCAGCTACTCGTTGGAAGATTTCTT
TTCCAGAATCTTCTCGTGAGCATATGCATATCCAATTGCAGAAATCTTCTCATCAATCCACTGCAACAATCTTTCGGTTG
CGATTTCTTTTCCAGAATCTTCTCGTTGGAATGAAGCATTAAGGAGTAAGTATCAGCAAGGAATTAAT----ACACTCCC
AGGCCCAGCTAATCAGCTACTCAAATAACTTTTCCGAATGCATCCAGTGAGCATATGCATATCCAAGTTCTGAATGCACT
TGACAGTTCAAAACAATTATGGCGTGATCCTCAA-GTCAAAAAGAGAACAAAAAATGTAAACAAAATTACTCGTGCATCA
-------------CAAGCCAAGCCTCCGTC---------------------CAAACTTCTAACTCATGTGGGGAATCATC
CTAGCGAAATCAAGTCAAAGGAGACGACTAACTCAGTGACTGCGTGGCTCATCGGGTTCAGAAGCTTCTGCGGGGCTTTG
CTTTCGCGCTTGCAGTAGGCGGCGCAGCCTTGTTGGGATTGTCCATCACCCCCAGTTCCATGGAGGCCTTGCTCTTGCGC
TTGCCGTGCGGCCCGTCGTCGGCTCTGGACGGGTCAGGTGCCGCTGGCGCCTTGTGCTTGAACCGGACCAGCAGG
>chr2B_708
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-------------------------------------------------------------AGCAAGAACAACATTTATG
CATGTATGT----GAATTGTATTTTCTTTTTCGAAAGA--ATATGATTTACATTTCCTGATCTTAGTCTACATGTTAACT
TTTTTGAGAGGGAAATGCTTT-TTTTGCTTCAATGGAAAATCCCGTTAAGGACAGAAAATTGATGATAGCCCATG---CC
CTACCCCAATACCTCGATCCTAGACCCCTCTCCCCTCGAAAGTCCAAACCACCAGAACTTCCATAACAAACTCCC-CCCT
GGATTCATCTCGGCCAGAAGCTCGGTTCTTGGCGGCAATGGCAACGGCCGCGCGGAATCTGCCGCCGGGCCACGCGTTCG
AGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCCCGGGGCACGTCGCA
GAGGGCGTGGACGTCTTCTCCGCGAGCCCCGCGGCGCTCCCCTTTCACCCCAGCAGCAGGCGGCGACACGGGGAGGCGTG
GGGCTACTTCTACGGCGCCCAGGCCGCCGGCGACGCGCGGCCGGCGCCGGGCGGGTGCTGGGCGCGGTACGGCCGCGAGA
AGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGGCGCAGGTTCGCGTTCCACGTGCCGCGGCAG
GGCTGCGACGGCCGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAGGGCGCGGCCGCCTT
CCGCGCCGCGCAGCCCGGCCCCAAGGCGGACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGGCGGTGGCCGTGGCCC
CTCCGACGCCGCCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCCCGACATGGACGAAGAGGACGACGGCTGGTACGGC
GAAGAGGACCGGAAGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGCGGAAGCGCGCTCGACCTAGCTGATG---CCGACC
GCGCGGGCACGGATGCGC-------------------------GCTCGTGTCTCGCTAGCGCCGCGTTCCATCGGTCATG
AGAACAATCCATGATCGCTGCTGCGTTTATCCTTCGGAGAGCTTTTGATTTG------CAGTACATGGGTTTCTGTAGTT
GCAGTCATCACCAAACCCGTAGTTCAGAGAAACTAGTAGAATTGAGAATCTGAATCTGTACGTATCTTGCGTTGGTTCTG
CAACATTTTCTTGATCTTCCTGCTCTTGTATGAACAAGTCAGGAATCCTATGCTTCATAGTTGCAACTTTCTTGTATGTT
GAAGCAGCAGTTTGTTTGTAAGTGAGTTCTTCACTTATCAATTCTCATGTT-GATGCAGAGTAAAAACCCCTCTGCCCCC
AATCAACTCGCTGCTAAGTAATCCTTCCTTGTGCAATTGCAGAAATGTGATGCTGGTGACAGAGGGAACTGTCTTCTGTG
ACCACCTCATCATTTTTCTGCGACATCAGCTGCTAACTGC----------------------------------------
-------------------------------------------------------ATCCACTGCAACAACCTTTTGGTTG
CGACTTCTTTTCCAGTATCTTCTCCTTGGAATGAAGCATTAAGG----AGTATCAGCAAGGAATTAATTAATACACTCCC
AGGCCCAGCTAATCAGCTACTCAAATAACTTTTCC---------------GCATATGCATATCCAAGTTCTGAGTGCACT
TGACAGTTCAAAACAATTATGGCGTGATCCTCAA-GTCAAAAAGAGAAGAAAAAATGTAAACAAAATTACTCGTGCATCA
AAGCGTCTCTTCACAAGCCAAGCCTCCGTC---------------------CAAACTTCTAACTCATGTGGGGAATCATC
CTAGCGAAATCAAGTCAAAGGAGACGACTAACTCAGTGACTGCGCGTCTCATCGGGTTCAGAAGCTTCTGCGGGGCTTTG
CTTTCGCGCTTGCAGTAGGCGGCGCAGCCTTGTCGAGGTTGTCCATCACCCCCAGTTCCATGGAGGCCTTGCTCTTGCGC
TTGCCGTGCGGCCCGTCGTCGGCTCTGGACGGGTCGGGTGCCGCTGGCGTCTTGTGCTTGAACCGGACCAGCAGG
>SNPs
-------------------SS---------------S-------------------------S-----------------
-----------SSS---------------------------S------------------S-------------------
---------------------------------S------------------------S---------------------
---------S------------------------SS--S---------S--S----------S-----------------
-S-----S---------------------------------------------S--------------------------
-------------S------------------------------------------------------------------
------------------------------------------S-------------------S-----------------
---S-------S-S--------------------S-------S------------------------S---SSSSSSS--
---------------------------------SS---------------------------------------------
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-------------------------------------------------SSSSSSS-S----------------------
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---------------------S----------------------------------------------------------
----------------------S---------------------------------------------------------
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-------------------------------------------------------S------------------------
--------------------------------------S---S-----------------------S-------------
------------------------------------------------------------------------------S-
---S----------------------------------------------------------------------------
---------------------S------------------------------------------------------S---
---------------------------------------------S--S-S---------------------SS---S--
-------------S------------------------------------------------------------------
----------------------S---S-----------------------------------------------------
-----------------------S--S----S-S-S--S-------------------SS--------S----SS-----
-----------------SS---------------------------------------S------------S--------
--S------------S------------------SS---SSS-S-SS---------------------------------
----------------------------S------SSS----------SS-S--------------S-------------
---------------S-------------S-----S--------------------------------------------
------------------------------------S-------------------------------------------
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-----------------------S--S-----S-SSS-------------------------------------------
------------------------------------------------------------------------------S-
-------------S--------------------S--------------------------S--------S--------S
-------S----------------------SSSSSSSSSSSSSSSSSSSSS------------------S-S--------
------------------------SS--------S---------------------------------------------
-----S------------------S----------------------------S--------------------------
-------------------------S-------------------------------------------------
>forward_21
--CAGGCTCGACGCTGACTAG-----------------------------------------------------------
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>reverse_2767
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----------------------------------------------ACATGCTTCAGGGTTGCAGT--------------
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