Multiple sequence alignment - TraesCS2D01G353800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G353800 chr2D 100.000 2990 0 0 1 2990 452558929 452555940 0.000000e+00 5522.0
1 TraesCS2D01G353800 chr2D 76.718 975 178 28 1014 1964 453614108 453613159 5.760000e-137 497.0
2 TraesCS2D01G353800 chr2D 79.074 540 91 15 1197 1725 453621034 453620506 4.740000e-93 351.0
3 TraesCS2D01G353800 chr2D 93.237 207 11 2 371 577 452574781 452574578 4.840000e-78 302.0
4 TraesCS2D01G353800 chr2D 93.258 178 12 0 2397 2574 288620641 288620464 2.290000e-66 263.0
5 TraesCS2D01G353800 chr2D 94.545 165 9 0 2400 2564 613424238 613424402 3.820000e-64 255.0
6 TraesCS2D01G353800 chr2D 74.126 429 92 15 1562 1983 453547252 453546836 3.080000e-35 159.0
7 TraesCS2D01G353800 chr2D 100.000 30 0 0 712 741 453614269 453614240 4.160000e-04 56.5
8 TraesCS2D01G353800 chr2B 97.536 1826 35 5 581 2401 532477288 532475468 0.000000e+00 3114.0
9 TraesCS2D01G353800 chr2B 89.078 586 46 11 1 577 767154392 767153816 0.000000e+00 712.0
10 TraesCS2D01G353800 chr2B 93.987 316 13 2 2561 2876 532475471 532475162 9.700000e-130 473.0
11 TraesCS2D01G353800 chr2B 74.419 473 100 16 1500 1964 532507187 532506728 1.830000e-42 183.0
12 TraesCS2D01G353800 chr2B 92.373 118 7 1 1305 1422 418282912 418282797 1.840000e-37 167.0
13 TraesCS2D01G353800 chr2A 95.344 1353 47 7 578 1928 596528852 596530190 0.000000e+00 2135.0
14 TraesCS2D01G353800 chr2A 88.783 526 48 9 1 518 683147573 683147051 4.200000e-178 634.0
15 TraesCS2D01G353800 chr2A 88.492 252 29 0 1225 1476 596154855 596154604 3.740000e-79 305.0
16 TraesCS2D01G353800 chr2A 82.653 294 30 14 293 577 683219687 683219406 1.070000e-59 241.0
17 TraesCS2D01G353800 chr2A 100.000 30 0 0 712 741 596379802 596379773 4.160000e-04 56.5
18 TraesCS2D01G353800 chr2A 100.000 29 0 0 713 741 596148528 596148500 1.000000e-03 54.7
19 TraesCS2D01G353800 chr7D 90.034 582 50 7 1 578 134662877 134663454 0.000000e+00 747.0
20 TraesCS2D01G353800 chr7D 90.941 287 18 8 294 577 134571070 134571351 2.180000e-101 379.0
21 TraesCS2D01G353800 chr7D 92.727 165 12 0 2400 2564 54541219 54541055 3.850000e-59 239.0
22 TraesCS2D01G353800 chr7D 91.379 174 15 0 2391 2564 522510303 522510476 3.850000e-59 239.0
23 TraesCS2D01G353800 chr7D 89.062 64 5 1 2888 2949 264294815 264294752 8.890000e-11 78.7
24 TraesCS2D01G353800 chr1A 87.797 590 44 20 1 577 336470851 336470277 0.000000e+00 665.0
25 TraesCS2D01G353800 chr4D 90.055 362 33 2 1 361 75019569 75019928 1.620000e-127 466.0
26 TraesCS2D01G353800 chr4D 87.500 256 21 9 327 579 75028320 75028567 4.880000e-73 285.0
27 TraesCS2D01G353800 chr4D 94.578 166 9 0 2399 2564 109243868 109243703 1.060000e-64 257.0
28 TraesCS2D01G353800 chr4D 93.333 165 11 0 2400 2564 207542616 207542452 8.280000e-61 244.0
29 TraesCS2D01G353800 chr4D 92.308 169 11 2 2396 2564 82733546 82733712 3.850000e-59 239.0
30 TraesCS2D01G353800 chr4D 91.379 174 15 0 2400 2573 83291603 83291776 3.850000e-59 239.0
31 TraesCS2D01G353800 chr5A 88.294 299 31 4 3 299 155208368 155208664 3.670000e-94 355.0
32 TraesCS2D01G353800 chr5A 83.462 260 33 8 290 547 154233881 154234132 1.790000e-57 233.0
33 TraesCS2D01G353800 chr1B 77.094 585 108 17 1 574 512418295 512418864 6.220000e-82 315.0
34 TraesCS2D01G353800 chr3D 92.353 170 12 1 2395 2564 6669721 6669553 1.070000e-59 241.0
35 TraesCS2D01G353800 chr6A 76.994 326 69 6 2 324 421462278 421462600 6.580000e-42 182.0
36 TraesCS2D01G353800 chr6A 74.688 320 75 6 8 324 9330483 9330167 1.450000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G353800 chr2D 452555940 452558929 2989 True 5522.00 5522 100.0000 1 2990 1 chr2D.!!$R2 2989
1 TraesCS2D01G353800 chr2D 453620506 453621034 528 True 351.00 351 79.0740 1197 1725 1 chr2D.!!$R5 528
2 TraesCS2D01G353800 chr2D 453613159 453614269 1110 True 276.75 497 88.3590 712 1964 2 chr2D.!!$R6 1252
3 TraesCS2D01G353800 chr2B 532475162 532477288 2126 True 1793.50 3114 95.7615 581 2876 2 chr2B.!!$R4 2295
4 TraesCS2D01G353800 chr2B 767153816 767154392 576 True 712.00 712 89.0780 1 577 1 chr2B.!!$R3 576
5 TraesCS2D01G353800 chr2A 596528852 596530190 1338 False 2135.00 2135 95.3440 578 1928 1 chr2A.!!$F1 1350
6 TraesCS2D01G353800 chr2A 683147051 683147573 522 True 634.00 634 88.7830 1 518 1 chr2A.!!$R4 517
7 TraesCS2D01G353800 chr7D 134662877 134663454 577 False 747.00 747 90.0340 1 578 1 chr7D.!!$F2 577
8 TraesCS2D01G353800 chr1A 336470277 336470851 574 True 665.00 665 87.7970 1 577 1 chr1A.!!$R1 576
9 TraesCS2D01G353800 chr1B 512418295 512418864 569 False 315.00 315 77.0940 1 574 1 chr1B.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 484 0.196118 TCTGGTTTCCCTTCTCCCCT 59.804 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2285 2346 1.199097 ACTTAGCAAACGAAATGCCGG 59.801 47.619 0.0 0.0 44.91 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.320587 CGTGTCACAGCTGAAGCCC 61.321 63.158 23.35 4.06 43.38 5.19
69 70 1.587034 GATTACTCGCCGGTTTTCTCG 59.413 52.381 1.90 0.00 0.00 4.04
185 187 1.735559 GGTACGCGTTCAGTGGTCC 60.736 63.158 20.78 3.97 33.90 4.46
231 233 4.158394 CCTGGGAAGATTACAATGTGTTGG 59.842 45.833 0.00 0.00 39.70 3.77
333 335 1.852633 ATCGGTGGACACATGAGAGA 58.147 50.000 0.00 0.00 0.00 3.10
411 413 2.192979 CCTGTGGCCTGTGTGTGT 59.807 61.111 3.32 0.00 0.00 3.72
413 415 1.153188 CTGTGGCCTGTGTGTGTGA 60.153 57.895 3.32 0.00 0.00 3.58
414 416 1.153188 TGTGGCCTGTGTGTGTGAG 60.153 57.895 3.32 0.00 0.00 3.51
415 417 2.203195 TGGCCTGTGTGTGTGAGC 60.203 61.111 3.32 0.00 0.00 4.26
416 418 2.111878 GGCCTGTGTGTGTGAGCT 59.888 61.111 0.00 0.00 0.00 4.09
417 419 1.371183 GGCCTGTGTGTGTGAGCTA 59.629 57.895 0.00 0.00 0.00 3.32
418 420 0.951040 GGCCTGTGTGTGTGAGCTAC 60.951 60.000 0.00 0.00 0.00 3.58
419 421 0.249868 GCCTGTGTGTGTGAGCTACA 60.250 55.000 0.00 0.00 36.82 2.74
420 422 1.609061 GCCTGTGTGTGTGAGCTACAT 60.609 52.381 0.00 0.00 42.24 2.29
421 423 2.353704 GCCTGTGTGTGTGAGCTACATA 60.354 50.000 0.00 0.00 42.24 2.29
422 424 3.864540 GCCTGTGTGTGTGAGCTACATAA 60.865 47.826 0.00 0.00 42.24 1.90
423 425 4.314961 CCTGTGTGTGTGAGCTACATAAA 58.685 43.478 0.00 0.00 42.24 1.40
424 426 4.152402 CCTGTGTGTGTGAGCTACATAAAC 59.848 45.833 0.00 0.00 42.24 2.01
425 427 4.062293 TGTGTGTGTGAGCTACATAAACC 58.938 43.478 9.33 1.13 42.24 3.27
426 428 4.062293 GTGTGTGTGAGCTACATAAACCA 58.938 43.478 0.00 0.00 42.24 3.67
427 429 4.152402 GTGTGTGTGAGCTACATAAACCAG 59.848 45.833 0.00 0.00 42.24 4.00
428 430 4.202315 TGTGTGTGAGCTACATAAACCAGT 60.202 41.667 0.00 0.00 42.24 4.00
429 431 4.389077 GTGTGTGAGCTACATAAACCAGTC 59.611 45.833 0.00 0.00 42.24 3.51
430 432 4.283467 TGTGTGAGCTACATAAACCAGTCT 59.717 41.667 0.00 0.00 42.24 3.24
431 433 4.627467 GTGTGAGCTACATAAACCAGTCTG 59.373 45.833 0.00 0.00 42.24 3.51
432 434 4.283467 TGTGAGCTACATAAACCAGTCTGT 59.717 41.667 0.00 0.00 33.42 3.41
433 435 5.479027 TGTGAGCTACATAAACCAGTCTGTA 59.521 40.000 0.00 0.00 33.42 2.74
434 436 6.014925 TGTGAGCTACATAAACCAGTCTGTAA 60.015 38.462 0.00 0.00 33.42 2.41
435 437 7.042335 GTGAGCTACATAAACCAGTCTGTAAT 58.958 38.462 0.00 0.00 0.00 1.89
436 438 7.222999 GTGAGCTACATAAACCAGTCTGTAATC 59.777 40.741 0.00 0.00 0.00 1.75
437 439 6.583562 AGCTACATAAACCAGTCTGTAATCC 58.416 40.000 0.00 0.00 0.00 3.01
438 440 5.758784 GCTACATAAACCAGTCTGTAATCCC 59.241 44.000 0.00 0.00 0.00 3.85
439 441 6.408206 GCTACATAAACCAGTCTGTAATCCCT 60.408 42.308 0.00 0.00 0.00 4.20
440 442 5.745227 ACATAAACCAGTCTGTAATCCCTG 58.255 41.667 0.00 0.00 0.00 4.45
442 444 2.642171 ACCAGTCTGTAATCCCTGGA 57.358 50.000 11.26 0.00 45.97 3.86
443 445 3.136641 ACCAGTCTGTAATCCCTGGAT 57.863 47.619 11.26 0.00 45.97 3.41
444 446 3.041946 ACCAGTCTGTAATCCCTGGATC 58.958 50.000 11.26 0.00 45.97 3.36
445 447 2.036475 CCAGTCTGTAATCCCTGGATCG 59.964 54.545 0.00 0.00 45.97 3.69
446 448 2.959030 CAGTCTGTAATCCCTGGATCGA 59.041 50.000 0.00 0.00 33.08 3.59
447 449 3.576118 CAGTCTGTAATCCCTGGATCGAT 59.424 47.826 0.00 0.00 33.08 3.59
448 450 4.767409 CAGTCTGTAATCCCTGGATCGATA 59.233 45.833 0.00 0.00 33.08 2.92
449 451 5.420421 CAGTCTGTAATCCCTGGATCGATAT 59.580 44.000 0.00 0.00 33.08 1.63
450 452 5.420421 AGTCTGTAATCCCTGGATCGATATG 59.580 44.000 0.00 0.00 33.08 1.78
451 453 4.711846 TCTGTAATCCCTGGATCGATATGG 59.288 45.833 0.00 0.57 33.08 2.74
452 454 4.683643 TGTAATCCCTGGATCGATATGGA 58.316 43.478 0.00 2.39 33.08 3.41
453 455 5.090845 TGTAATCCCTGGATCGATATGGAA 58.909 41.667 0.00 0.00 33.08 3.53
454 456 5.726308 TGTAATCCCTGGATCGATATGGAAT 59.274 40.000 0.00 0.00 33.08 3.01
455 457 6.900743 TGTAATCCCTGGATCGATATGGAATA 59.099 38.462 0.00 0.00 33.08 1.75
456 458 6.891306 AATCCCTGGATCGATATGGAATAA 57.109 37.500 0.00 0.00 33.08 1.40
457 459 5.939764 TCCCTGGATCGATATGGAATAAG 57.060 43.478 0.00 0.00 29.06 1.73
458 460 5.589831 TCCCTGGATCGATATGGAATAAGA 58.410 41.667 0.00 0.00 29.06 2.10
459 461 6.205298 TCCCTGGATCGATATGGAATAAGAT 58.795 40.000 0.00 0.00 34.43 2.40
460 462 7.362234 TCCCTGGATCGATATGGAATAAGATA 58.638 38.462 0.00 0.00 32.74 1.98
461 463 7.844269 TCCCTGGATCGATATGGAATAAGATAA 59.156 37.037 0.00 0.00 32.74 1.75
462 464 7.928706 CCCTGGATCGATATGGAATAAGATAAC 59.071 40.741 0.00 0.00 32.74 1.89
463 465 8.700051 CCTGGATCGATATGGAATAAGATAACT 58.300 37.037 0.00 0.00 32.74 2.24
464 466 9.743057 CTGGATCGATATGGAATAAGATAACTC 57.257 37.037 0.00 0.00 32.74 3.01
465 467 9.480861 TGGATCGATATGGAATAAGATAACTCT 57.519 33.333 0.00 0.00 32.74 3.24
466 468 9.743057 GGATCGATATGGAATAAGATAACTCTG 57.257 37.037 0.00 0.00 32.74 3.35
467 469 9.743057 GATCGATATGGAATAAGATAACTCTGG 57.257 37.037 0.00 0.00 32.74 3.86
468 470 8.651589 TCGATATGGAATAAGATAACTCTGGT 57.348 34.615 0.00 0.00 29.06 4.00
469 471 9.090103 TCGATATGGAATAAGATAACTCTGGTT 57.910 33.333 0.00 0.00 34.16 3.67
470 472 9.712305 CGATATGGAATAAGATAACTCTGGTTT 57.288 33.333 0.00 0.00 32.67 3.27
473 475 6.659824 TGGAATAAGATAACTCTGGTTTCCC 58.340 40.000 0.00 0.00 35.61 3.97
474 476 6.447084 TGGAATAAGATAACTCTGGTTTCCCT 59.553 38.462 0.00 0.00 35.61 4.20
475 477 7.036863 TGGAATAAGATAACTCTGGTTTCCCTT 60.037 37.037 0.00 0.00 35.61 3.95
476 478 7.499563 GGAATAAGATAACTCTGGTTTCCCTTC 59.500 40.741 0.00 0.00 36.92 3.46
477 479 7.757242 ATAAGATAACTCTGGTTTCCCTTCT 57.243 36.000 0.00 0.00 36.92 2.85
478 480 5.685520 AGATAACTCTGGTTTCCCTTCTC 57.314 43.478 0.00 0.00 36.92 2.87
479 481 4.471747 AGATAACTCTGGTTTCCCTTCTCC 59.528 45.833 0.00 0.00 36.92 3.71
480 482 1.363246 ACTCTGGTTTCCCTTCTCCC 58.637 55.000 0.00 0.00 0.00 4.30
481 483 0.621082 CTCTGGTTTCCCTTCTCCCC 59.379 60.000 0.00 0.00 0.00 4.81
482 484 0.196118 TCTGGTTTCCCTTCTCCCCT 59.804 55.000 0.00 0.00 0.00 4.79
483 485 1.076438 CTGGTTTCCCTTCTCCCCTT 58.924 55.000 0.00 0.00 0.00 3.95
484 486 0.777446 TGGTTTCCCTTCTCCCCTTG 59.223 55.000 0.00 0.00 0.00 3.61
485 487 0.778083 GGTTTCCCTTCTCCCCTTGT 59.222 55.000 0.00 0.00 0.00 3.16
486 488 1.271982 GGTTTCCCTTCTCCCCTTGTC 60.272 57.143 0.00 0.00 0.00 3.18
487 489 1.705745 GTTTCCCTTCTCCCCTTGTCT 59.294 52.381 0.00 0.00 0.00 3.41
488 490 2.108425 GTTTCCCTTCTCCCCTTGTCTT 59.892 50.000 0.00 0.00 0.00 3.01
489 491 1.657804 TCCCTTCTCCCCTTGTCTTC 58.342 55.000 0.00 0.00 0.00 2.87
490 492 0.250513 CCCTTCTCCCCTTGTCTTCG 59.749 60.000 0.00 0.00 0.00 3.79
491 493 0.977395 CCTTCTCCCCTTGTCTTCGT 59.023 55.000 0.00 0.00 0.00 3.85
492 494 1.066787 CCTTCTCCCCTTGTCTTCGTC 60.067 57.143 0.00 0.00 0.00 4.20
493 495 1.896465 CTTCTCCCCTTGTCTTCGTCT 59.104 52.381 0.00 0.00 0.00 4.18
494 496 2.893215 TCTCCCCTTGTCTTCGTCTA 57.107 50.000 0.00 0.00 0.00 2.59
495 497 3.383698 TCTCCCCTTGTCTTCGTCTAT 57.616 47.619 0.00 0.00 0.00 1.98
496 498 3.288964 TCTCCCCTTGTCTTCGTCTATC 58.711 50.000 0.00 0.00 0.00 2.08
497 499 3.053544 TCTCCCCTTGTCTTCGTCTATCT 60.054 47.826 0.00 0.00 0.00 1.98
498 500 3.288964 TCCCCTTGTCTTCGTCTATCTC 58.711 50.000 0.00 0.00 0.00 2.75
499 501 3.053544 TCCCCTTGTCTTCGTCTATCTCT 60.054 47.826 0.00 0.00 0.00 3.10
500 502 3.316868 CCCCTTGTCTTCGTCTATCTCTC 59.683 52.174 0.00 0.00 0.00 3.20
501 503 4.204012 CCCTTGTCTTCGTCTATCTCTCT 58.796 47.826 0.00 0.00 0.00 3.10
502 504 4.274950 CCCTTGTCTTCGTCTATCTCTCTC 59.725 50.000 0.00 0.00 0.00 3.20
503 505 5.123227 CCTTGTCTTCGTCTATCTCTCTCT 58.877 45.833 0.00 0.00 0.00 3.10
504 506 5.007626 CCTTGTCTTCGTCTATCTCTCTCTG 59.992 48.000 0.00 0.00 0.00 3.35
505 507 3.874543 TGTCTTCGTCTATCTCTCTCTGC 59.125 47.826 0.00 0.00 0.00 4.26
506 508 4.127171 GTCTTCGTCTATCTCTCTCTGCT 58.873 47.826 0.00 0.00 0.00 4.24
507 509 4.211374 GTCTTCGTCTATCTCTCTCTGCTC 59.789 50.000 0.00 0.00 0.00 4.26
508 510 4.100963 TCTTCGTCTATCTCTCTCTGCTCT 59.899 45.833 0.00 0.00 0.00 4.09
509 511 3.990092 TCGTCTATCTCTCTCTGCTCTC 58.010 50.000 0.00 0.00 0.00 3.20
510 512 3.067106 CGTCTATCTCTCTCTGCTCTCC 58.933 54.545 0.00 0.00 0.00 3.71
511 513 3.244215 CGTCTATCTCTCTCTGCTCTCCT 60.244 52.174 0.00 0.00 0.00 3.69
512 514 4.319177 GTCTATCTCTCTCTGCTCTCCTC 58.681 52.174 0.00 0.00 0.00 3.71
513 515 3.973305 TCTATCTCTCTCTGCTCTCCTCA 59.027 47.826 0.00 0.00 0.00 3.86
514 516 2.418368 TCTCTCTCTGCTCTCCTCAC 57.582 55.000 0.00 0.00 0.00 3.51
515 517 1.064758 TCTCTCTCTGCTCTCCTCACC 60.065 57.143 0.00 0.00 0.00 4.02
516 518 0.998928 TCTCTCTGCTCTCCTCACCT 59.001 55.000 0.00 0.00 0.00 4.00
517 519 2.172505 CTCTCTCTGCTCTCCTCACCTA 59.827 54.545 0.00 0.00 0.00 3.08
518 520 2.578480 TCTCTCTGCTCTCCTCACCTAA 59.422 50.000 0.00 0.00 0.00 2.69
519 521 2.687935 CTCTCTGCTCTCCTCACCTAAC 59.312 54.545 0.00 0.00 0.00 2.34
520 522 1.754226 CTCTGCTCTCCTCACCTAACC 59.246 57.143 0.00 0.00 0.00 2.85
521 523 0.827368 CTGCTCTCCTCACCTAACCC 59.173 60.000 0.00 0.00 0.00 4.11
522 524 0.970937 TGCTCTCCTCACCTAACCCG 60.971 60.000 0.00 0.00 0.00 5.28
523 525 0.683504 GCTCTCCTCACCTAACCCGA 60.684 60.000 0.00 0.00 0.00 5.14
524 526 2.030045 GCTCTCCTCACCTAACCCGAT 61.030 57.143 0.00 0.00 0.00 4.18
525 527 2.389715 CTCTCCTCACCTAACCCGATT 58.610 52.381 0.00 0.00 0.00 3.34
526 528 3.563223 CTCTCCTCACCTAACCCGATTA 58.437 50.000 0.00 0.00 0.00 1.75
527 529 3.294214 TCTCCTCACCTAACCCGATTAC 58.706 50.000 0.00 0.00 0.00 1.89
528 530 2.364647 CTCCTCACCTAACCCGATTACC 59.635 54.545 0.00 0.00 0.00 2.85
529 531 1.415289 CCTCACCTAACCCGATTACCC 59.585 57.143 0.00 0.00 0.00 3.69
530 532 2.395619 CTCACCTAACCCGATTACCCT 58.604 52.381 0.00 0.00 0.00 4.34
531 533 2.770232 CTCACCTAACCCGATTACCCTT 59.230 50.000 0.00 0.00 0.00 3.95
532 534 2.767960 TCACCTAACCCGATTACCCTTC 59.232 50.000 0.00 0.00 0.00 3.46
533 535 2.770232 CACCTAACCCGATTACCCTTCT 59.230 50.000 0.00 0.00 0.00 2.85
534 536 3.036819 ACCTAACCCGATTACCCTTCTC 58.963 50.000 0.00 0.00 0.00 2.87
535 537 2.367894 CCTAACCCGATTACCCTTCTCC 59.632 54.545 0.00 0.00 0.00 3.71
536 538 1.210538 AACCCGATTACCCTTCTCCC 58.789 55.000 0.00 0.00 0.00 4.30
537 539 0.693430 ACCCGATTACCCTTCTCCCC 60.693 60.000 0.00 0.00 0.00 4.81
538 540 1.416480 CCCGATTACCCTTCTCCCCC 61.416 65.000 0.00 0.00 0.00 5.40
539 541 0.400093 CCGATTACCCTTCTCCCCCT 60.400 60.000 0.00 0.00 0.00 4.79
540 542 0.759346 CGATTACCCTTCTCCCCCTG 59.241 60.000 0.00 0.00 0.00 4.45
541 543 1.894699 GATTACCCTTCTCCCCCTGT 58.105 55.000 0.00 0.00 0.00 4.00
542 544 1.490910 GATTACCCTTCTCCCCCTGTG 59.509 57.143 0.00 0.00 0.00 3.66
543 545 1.205460 TTACCCTTCTCCCCCTGTGC 61.205 60.000 0.00 0.00 0.00 4.57
544 546 4.101448 CCCTTCTCCCCCTGTGCG 62.101 72.222 0.00 0.00 0.00 5.34
545 547 3.003173 CCTTCTCCCCCTGTGCGA 61.003 66.667 0.00 0.00 0.00 5.10
546 548 2.370445 CCTTCTCCCCCTGTGCGAT 61.370 63.158 0.00 0.00 0.00 4.58
547 549 1.144936 CTTCTCCCCCTGTGCGATC 59.855 63.158 0.00 0.00 0.00 3.69
548 550 2.635229 CTTCTCCCCCTGTGCGATCG 62.635 65.000 11.69 11.69 0.00 3.69
549 551 3.147595 CTCCCCCTGTGCGATCGA 61.148 66.667 21.57 0.59 0.00 3.59
550 552 2.443952 TCCCCCTGTGCGATCGAT 60.444 61.111 21.57 0.00 0.00 3.59
551 553 2.029666 CCCCCTGTGCGATCGATC 59.970 66.667 21.57 15.68 0.00 3.69
552 554 2.029666 CCCCTGTGCGATCGATCC 59.970 66.667 21.57 12.54 0.00 3.36
553 555 2.029666 CCCTGTGCGATCGATCCC 59.970 66.667 21.57 11.49 0.00 3.85
554 556 2.502492 CCCTGTGCGATCGATCCCT 61.502 63.158 21.57 0.00 0.00 4.20
555 557 1.006805 CCTGTGCGATCGATCCCTC 60.007 63.158 21.57 11.96 0.00 4.30
556 558 1.459455 CCTGTGCGATCGATCCCTCT 61.459 60.000 21.57 0.00 0.00 3.69
557 559 1.239347 CTGTGCGATCGATCCCTCTA 58.761 55.000 21.57 2.31 0.00 2.43
558 560 1.198867 CTGTGCGATCGATCCCTCTAG 59.801 57.143 21.57 5.65 0.00 2.43
559 561 1.202770 TGTGCGATCGATCCCTCTAGA 60.203 52.381 21.57 0.00 0.00 2.43
560 562 1.466950 GTGCGATCGATCCCTCTAGAG 59.533 57.143 21.57 13.18 0.00 2.43
561 563 1.072489 TGCGATCGATCCCTCTAGAGT 59.928 52.381 21.57 0.00 0.00 3.24
562 564 2.156098 GCGATCGATCCCTCTAGAGTT 58.844 52.381 21.57 3.04 0.00 3.01
563 565 2.160813 GCGATCGATCCCTCTAGAGTTC 59.839 54.545 21.57 10.87 0.00 3.01
564 566 3.403968 CGATCGATCCCTCTAGAGTTCA 58.596 50.000 19.51 2.19 0.00 3.18
565 567 4.006989 CGATCGATCCCTCTAGAGTTCAT 58.993 47.826 19.51 6.98 0.00 2.57
566 568 4.094294 CGATCGATCCCTCTAGAGTTCATC 59.906 50.000 19.51 13.87 0.00 2.92
567 569 3.403968 TCGATCCCTCTAGAGTTCATCG 58.596 50.000 25.24 25.24 33.90 3.84
568 570 2.486203 CGATCCCTCTAGAGTTCATCGG 59.514 54.545 24.31 16.23 31.35 4.18
569 571 3.492337 GATCCCTCTAGAGTTCATCGGT 58.508 50.000 18.42 2.90 0.00 4.69
570 572 2.933573 TCCCTCTAGAGTTCATCGGTC 58.066 52.381 18.42 0.00 0.00 4.79
571 573 1.604755 CCCTCTAGAGTTCATCGGTCG 59.395 57.143 18.42 0.00 0.00 4.79
572 574 2.290464 CCTCTAGAGTTCATCGGTCGT 58.710 52.381 18.42 0.00 0.00 4.34
573 575 2.288458 CCTCTAGAGTTCATCGGTCGTC 59.712 54.545 18.42 0.00 0.00 4.20
574 576 2.937149 CTCTAGAGTTCATCGGTCGTCA 59.063 50.000 11.89 0.00 0.00 4.35
575 577 2.676839 TCTAGAGTTCATCGGTCGTCAC 59.323 50.000 0.00 0.00 0.00 3.67
576 578 1.244816 AGAGTTCATCGGTCGTCACA 58.755 50.000 0.00 0.00 0.00 3.58
801 803 2.580470 CTATCACGCGCAGGCTTCG 61.580 63.158 5.73 1.12 36.88 3.79
893 921 2.500098 TCGTCTGATTGAAAGTAGGGGG 59.500 50.000 0.00 0.00 0.00 5.40
1033 1066 1.301009 GTCCTCCATCGATTCGCCC 60.301 63.158 0.00 0.00 0.00 6.13
1064 1103 5.510430 TCTCAGATGAAGACTACTGCCTTA 58.490 41.667 0.00 0.00 0.00 2.69
1254 1306 5.178096 TCATGTCATACACAGGACCAAAT 57.822 39.130 0.00 0.00 40.91 2.32
1667 1719 6.518369 TGTCATTTACAACTAGGAGTCACCTG 60.518 42.308 0.00 0.00 41.70 4.00
1816 1873 6.881602 AGAAACCTTTTCTCCATACTCATCAC 59.118 38.462 0.00 0.00 0.00 3.06
1827 1884 4.981054 CCATACTCATCACGACATTGAGAG 59.019 45.833 13.45 7.24 39.36 3.20
1832 1889 1.783284 TCACGACATTGAGAGTGTGC 58.217 50.000 0.00 0.00 36.16 4.57
1854 1911 3.188254 CGGCATGAGACATGTGTTTTACA 59.812 43.478 1.15 0.00 44.87 2.41
1928 1987 9.685276 ATCATTCATTGTATCTTGGTTGACTTA 57.315 29.630 0.00 0.00 0.00 2.24
2120 2181 7.223387 CCCAAAATTTCAAAAGAAGAGAGTGTG 59.777 37.037 0.00 0.00 0.00 3.82
2165 2226 7.187824 ACATCAGTAAAGCCTCTATTTCTCA 57.812 36.000 0.00 0.00 0.00 3.27
2168 2229 9.941325 CATCAGTAAAGCCTCTATTTCTCATAT 57.059 33.333 0.00 0.00 0.00 1.78
2192 2253 6.670695 AGATAGATTTTGCTTGTTTTGGGT 57.329 33.333 0.00 0.00 0.00 4.51
2202 2263 3.572682 GCTTGTTTTGGGTAGTTTAGGCT 59.427 43.478 0.00 0.00 0.00 4.58
2307 2368 2.908626 CGGCATTTCGTTTGCTAAGTTC 59.091 45.455 6.87 0.00 40.03 3.01
2312 2373 5.115622 GCATTTCGTTTGCTAAGTTCTGTTC 59.884 40.000 0.00 0.00 37.14 3.18
2378 2439 1.270094 CCGCCGAGTTATTATCAGGCA 60.270 52.381 5.12 0.00 44.34 4.75
2397 2458 5.178623 CAGGCACTCGACAAACACTTAAATA 59.821 40.000 0.00 0.00 34.60 1.40
2398 2459 5.408604 AGGCACTCGACAAACACTTAAATAG 59.591 40.000 0.00 0.00 0.00 1.73
2399 2460 5.178809 GGCACTCGACAAACACTTAAATAGT 59.821 40.000 0.00 0.00 37.68 2.12
2400 2461 6.366877 GGCACTCGACAAACACTTAAATAGTA 59.633 38.462 0.00 0.00 34.56 1.82
2401 2462 7.225397 GCACTCGACAAACACTTAAATAGTAC 58.775 38.462 0.00 0.00 34.56 2.73
2402 2463 7.115947 GCACTCGACAAACACTTAAATAGTACT 59.884 37.037 0.00 0.00 34.56 2.73
2403 2464 8.636843 CACTCGACAAACACTTAAATAGTACTC 58.363 37.037 0.00 0.00 34.56 2.59
2404 2465 7.811713 ACTCGACAAACACTTAAATAGTACTCC 59.188 37.037 0.00 0.00 34.56 3.85
2405 2466 7.092716 TCGACAAACACTTAAATAGTACTCCC 58.907 38.462 0.00 0.00 34.56 4.30
2406 2467 7.039504 TCGACAAACACTTAAATAGTACTCCCT 60.040 37.037 0.00 0.00 34.56 4.20
2407 2468 7.275123 CGACAAACACTTAAATAGTACTCCCTC 59.725 40.741 0.00 0.00 34.56 4.30
2408 2469 7.392418 ACAAACACTTAAATAGTACTCCCTCC 58.608 38.462 0.00 0.00 34.56 4.30
2409 2470 5.848833 ACACTTAAATAGTACTCCCTCCG 57.151 43.478 0.00 0.00 34.56 4.63
2410 2471 5.267587 ACACTTAAATAGTACTCCCTCCGT 58.732 41.667 0.00 0.00 34.56 4.69
2411 2472 5.718607 ACACTTAAATAGTACTCCCTCCGTT 59.281 40.000 0.00 0.00 34.56 4.44
2412 2473 6.212187 ACACTTAAATAGTACTCCCTCCGTTT 59.788 38.462 0.00 0.00 34.56 3.60
2413 2474 6.755607 CACTTAAATAGTACTCCCTCCGTTTC 59.244 42.308 0.00 0.00 34.56 2.78
2414 2475 6.438425 ACTTAAATAGTACTCCCTCCGTTTCA 59.562 38.462 0.00 0.00 34.56 2.69
2415 2476 5.750352 AAATAGTACTCCCTCCGTTTCAA 57.250 39.130 0.00 0.00 0.00 2.69
2416 2477 5.750352 AATAGTACTCCCTCCGTTTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
2417 2478 5.750352 ATAGTACTCCCTCCGTTTCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
2418 2479 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
2419 2480 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
2420 2481 6.309389 AGTACTCCCTCCGTTTCAAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
2421 2482 7.427989 AGTACTCCCTCCGTTTCAAAATATA 57.572 36.000 0.00 0.00 0.00 0.86
2422 2483 7.854337 AGTACTCCCTCCGTTTCAAAATATAA 58.146 34.615 0.00 0.00 0.00 0.98
2423 2484 8.323567 AGTACTCCCTCCGTTTCAAAATATAAA 58.676 33.333 0.00 0.00 0.00 1.40
2424 2485 9.117183 GTACTCCCTCCGTTTCAAAATATAAAT 57.883 33.333 0.00 0.00 0.00 1.40
2425 2486 8.221965 ACTCCCTCCGTTTCAAAATATAAATC 57.778 34.615 0.00 0.00 0.00 2.17
2426 2487 8.053355 ACTCCCTCCGTTTCAAAATATAAATCT 58.947 33.333 0.00 0.00 0.00 2.40
2427 2488 8.817092 TCCCTCCGTTTCAAAATATAAATCTT 57.183 30.769 0.00 0.00 0.00 2.40
2428 2489 9.250246 TCCCTCCGTTTCAAAATATAAATCTTT 57.750 29.630 0.00 0.00 0.00 2.52
2429 2490 9.301153 CCCTCCGTTTCAAAATATAAATCTTTG 57.699 33.333 0.00 0.00 0.00 2.77
2430 2491 9.855021 CCTCCGTTTCAAAATATAAATCTTTGT 57.145 29.630 0.00 0.00 32.92 2.83
2450 2511 9.268268 TCTTTGTAGAAATTTCAATACGTGACT 57.732 29.630 19.99 0.00 35.39 3.41
2453 2514 9.478768 TTGTAGAAATTTCAATACGTGACTACA 57.521 29.630 19.99 11.89 38.27 2.74
2454 2515 9.647797 TGTAGAAATTTCAATACGTGACTACAT 57.352 29.630 19.99 0.00 36.58 2.29
2457 2518 8.804743 AGAAATTTCAATACGTGACTACATACG 58.195 33.333 19.99 0.00 45.19 3.06
2458 2519 7.459394 AATTTCAATACGTGACTACATACGG 57.541 36.000 0.00 0.00 44.07 4.02
2459 2520 5.816449 TTCAATACGTGACTACATACGGA 57.184 39.130 0.00 0.00 44.07 4.69
2460 2521 5.413969 TCAATACGTGACTACATACGGAG 57.586 43.478 0.00 0.00 44.07 4.63
2461 2522 3.892918 ATACGTGACTACATACGGAGC 57.107 47.619 0.00 0.00 44.07 4.70
2462 2523 1.456296 ACGTGACTACATACGGAGCA 58.544 50.000 0.00 0.00 44.07 4.26
2463 2524 1.814394 ACGTGACTACATACGGAGCAA 59.186 47.619 0.00 0.00 44.07 3.91
2464 2525 2.229543 ACGTGACTACATACGGAGCAAA 59.770 45.455 0.00 0.00 44.07 3.68
2465 2526 3.247442 CGTGACTACATACGGAGCAAAA 58.753 45.455 0.00 0.00 36.71 2.44
2466 2527 3.863424 CGTGACTACATACGGAGCAAAAT 59.137 43.478 0.00 0.00 36.71 1.82
2467 2528 4.259810 CGTGACTACATACGGAGCAAAATG 60.260 45.833 0.00 0.00 36.71 2.32
2468 2529 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2469 2530 5.350365 GTGACTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
2470 2531 6.037172 GTGACTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
2471 2532 6.037062 TGACTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
2472 2533 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2473 2534 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2474 2535 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2475 2536 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2476 2537 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2477 2538 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2478 2539 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2479 2540 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2480 2541 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2481 2542 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
2482 2543 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
2483 2544 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
2484 2545 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
2485 2546 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2521 2582 8.771920 CATACATCCGTATGTTGTATACCATT 57.228 34.615 0.00 0.00 46.70 3.16
2522 2583 9.214957 CATACATCCGTATGTTGTATACCATTT 57.785 33.333 0.00 0.00 46.70 2.32
2523 2584 7.490962 ACATCCGTATGTTGTATACCATTTG 57.509 36.000 0.00 0.00 44.07 2.32
2524 2585 7.276658 ACATCCGTATGTTGTATACCATTTGA 58.723 34.615 0.00 0.00 44.07 2.69
2525 2586 7.771361 ACATCCGTATGTTGTATACCATTTGAA 59.229 33.333 0.00 0.00 44.07 2.69
2526 2587 8.616942 CATCCGTATGTTGTATACCATTTGAAA 58.383 33.333 0.00 0.00 0.00 2.69
2527 2588 8.740123 TCCGTATGTTGTATACCATTTGAAAT 57.260 30.769 0.00 0.00 0.00 2.17
2528 2589 8.616942 TCCGTATGTTGTATACCATTTGAAATG 58.383 33.333 10.84 10.84 0.00 2.32
2529 2590 8.402472 CCGTATGTTGTATACCATTTGAAATGT 58.598 33.333 15.93 7.49 0.00 2.71
2530 2591 9.433317 CGTATGTTGTATACCATTTGAAATGTC 57.567 33.333 15.93 3.21 0.00 3.06
2638 2699 3.130164 TGACCGTTTAATGGGCATTCATG 59.870 43.478 7.81 0.00 37.37 3.07
2683 2749 1.443872 CCTCGTCCGACCAAACTCG 60.444 63.158 0.00 0.00 0.00 4.18
2690 2759 2.613506 CGACCAAACTCGGCAACCC 61.614 63.158 0.00 0.00 0.00 4.11
2739 2808 2.078392 ACGTCCGTTTGTTGAGTTGTT 58.922 42.857 0.00 0.00 0.00 2.83
2780 2849 3.326747 AGCTTTGACGAGTGTGGTATTC 58.673 45.455 0.00 0.00 0.00 1.75
2807 2876 1.867233 GCTTTGACGAGCAACTTCTCA 59.133 47.619 0.00 0.00 42.25 3.27
2811 2880 1.202371 TGACGAGCAACTTCTCAACGT 60.202 47.619 0.00 0.00 33.41 3.99
2852 2921 4.065789 AGTTTTGGTCCGATGAAACTCTC 58.934 43.478 6.65 0.00 37.70 3.20
2858 2927 4.120589 GGTCCGATGAAACTCTCCAATAC 58.879 47.826 0.00 0.00 0.00 1.89
2872 2941 5.866207 TCTCCAATACGAGTAGATGCTAGA 58.134 41.667 0.00 0.00 0.00 2.43
2876 2945 7.371159 TCCAATACGAGTAGATGCTAGATTTG 58.629 38.462 0.00 0.00 0.00 2.32
2877 2946 7.014326 TCCAATACGAGTAGATGCTAGATTTGT 59.986 37.037 0.00 0.00 0.00 2.83
2878 2947 7.653713 CCAATACGAGTAGATGCTAGATTTGTT 59.346 37.037 0.00 0.00 0.00 2.83
2879 2948 9.678941 CAATACGAGTAGATGCTAGATTTGTTA 57.321 33.333 0.00 0.00 0.00 2.41
2972 3041 8.964533 ACATATCACTATAGGAATCAGGAACT 57.035 34.615 4.43 0.00 43.88 3.01
2973 3042 9.386122 ACATATCACTATAGGAATCAGGAACTT 57.614 33.333 4.43 0.00 34.60 2.66
2984 3053 3.260931 GGAACTTTTCCGTCCGCC 58.739 61.111 0.00 0.00 40.59 6.13
2985 3054 1.598685 GGAACTTTTCCGTCCGCCA 60.599 57.895 0.00 0.00 40.59 5.69
2986 3055 1.572941 GAACTTTTCCGTCCGCCAC 59.427 57.895 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.271800 GGCGAGTAATCTGGTGTGAAG 58.728 52.381 0.00 0.00 0.00 3.02
100 102 1.668151 GCGACAGGTTGGAGTGGAC 60.668 63.158 0.00 0.00 0.00 4.02
185 187 0.934496 CAGACTCCGTAGAGAGCGAG 59.066 60.000 0.00 0.00 43.39 5.03
231 233 4.944372 CGTCGGGTAGCGATGGCC 62.944 72.222 0.00 0.00 41.24 5.36
333 335 2.114616 CACCTAGGTTGCTCTCCTCAT 58.885 52.381 13.15 0.00 36.60 2.90
376 378 2.423064 GCGGCCCAATAAACCCCAG 61.423 63.158 0.00 0.00 0.00 4.45
409 411 4.283467 ACAGACTGGTTTATGTAGCTCACA 59.717 41.667 7.51 0.00 42.69 3.58
411 413 6.599356 TTACAGACTGGTTTATGTAGCTCA 57.401 37.500 7.51 0.00 30.39 4.26
413 415 6.408206 GGGATTACAGACTGGTTTATGTAGCT 60.408 42.308 7.51 0.00 30.39 3.32
414 416 5.758784 GGGATTACAGACTGGTTTATGTAGC 59.241 44.000 7.51 0.00 30.39 3.58
415 417 6.986817 CAGGGATTACAGACTGGTTTATGTAG 59.013 42.308 7.51 0.00 30.39 2.74
416 418 6.126883 CCAGGGATTACAGACTGGTTTATGTA 60.127 42.308 7.51 0.00 44.21 2.29
417 419 5.339200 CCAGGGATTACAGACTGGTTTATGT 60.339 44.000 7.51 0.00 44.21 2.29
418 420 5.126067 CCAGGGATTACAGACTGGTTTATG 58.874 45.833 7.51 0.00 44.21 1.90
419 421 5.373812 CCAGGGATTACAGACTGGTTTAT 57.626 43.478 7.51 0.00 44.21 1.40
420 422 4.837093 CCAGGGATTACAGACTGGTTTA 57.163 45.455 7.51 0.00 44.21 2.01
421 423 3.721087 CCAGGGATTACAGACTGGTTT 57.279 47.619 7.51 0.00 44.21 3.27
425 427 2.959030 TCGATCCAGGGATTACAGACTG 59.041 50.000 1.69 0.00 34.60 3.51
426 428 3.314307 TCGATCCAGGGATTACAGACT 57.686 47.619 1.69 0.00 34.60 3.24
427 429 5.394663 CCATATCGATCCAGGGATTACAGAC 60.395 48.000 0.00 0.00 34.60 3.51
428 430 4.711846 CCATATCGATCCAGGGATTACAGA 59.288 45.833 0.00 1.48 34.60 3.41
429 431 4.711846 TCCATATCGATCCAGGGATTACAG 59.288 45.833 0.00 0.00 34.60 2.74
430 432 4.683643 TCCATATCGATCCAGGGATTACA 58.316 43.478 0.00 0.00 34.60 2.41
431 433 5.677319 TTCCATATCGATCCAGGGATTAC 57.323 43.478 0.00 0.00 34.60 1.89
432 434 7.844269 TCTTATTCCATATCGATCCAGGGATTA 59.156 37.037 0.00 0.34 34.60 1.75
433 435 6.673978 TCTTATTCCATATCGATCCAGGGATT 59.326 38.462 0.00 1.35 34.60 3.01
434 436 6.205298 TCTTATTCCATATCGATCCAGGGAT 58.795 40.000 0.00 5.46 37.59 3.85
435 437 5.589831 TCTTATTCCATATCGATCCAGGGA 58.410 41.667 0.00 0.00 0.00 4.20
436 438 5.939764 TCTTATTCCATATCGATCCAGGG 57.060 43.478 0.00 0.00 0.00 4.45
437 439 8.700051 AGTTATCTTATTCCATATCGATCCAGG 58.300 37.037 0.00 2.47 0.00 4.45
438 440 9.743057 GAGTTATCTTATTCCATATCGATCCAG 57.257 37.037 0.00 0.00 0.00 3.86
439 441 9.480861 AGAGTTATCTTATTCCATATCGATCCA 57.519 33.333 0.00 0.00 28.57 3.41
440 442 9.743057 CAGAGTTATCTTATTCCATATCGATCC 57.257 37.037 0.00 0.00 31.64 3.36
441 443 9.743057 CCAGAGTTATCTTATTCCATATCGATC 57.257 37.037 0.00 0.00 31.64 3.69
442 444 9.261035 ACCAGAGTTATCTTATTCCATATCGAT 57.739 33.333 2.16 2.16 31.64 3.59
443 445 8.651589 ACCAGAGTTATCTTATTCCATATCGA 57.348 34.615 0.00 0.00 31.64 3.59
444 446 9.712305 AAACCAGAGTTATCTTATTCCATATCG 57.288 33.333 0.00 0.00 34.19 2.92
467 469 1.705745 AGACAAGGGGAGAAGGGAAAC 59.294 52.381 0.00 0.00 0.00 2.78
468 470 2.133858 AGACAAGGGGAGAAGGGAAA 57.866 50.000 0.00 0.00 0.00 3.13
469 471 1.985895 GAAGACAAGGGGAGAAGGGAA 59.014 52.381 0.00 0.00 0.00 3.97
470 472 1.657804 GAAGACAAGGGGAGAAGGGA 58.342 55.000 0.00 0.00 0.00 4.20
471 473 0.250513 CGAAGACAAGGGGAGAAGGG 59.749 60.000 0.00 0.00 0.00 3.95
472 474 0.977395 ACGAAGACAAGGGGAGAAGG 59.023 55.000 0.00 0.00 0.00 3.46
473 475 1.896465 AGACGAAGACAAGGGGAGAAG 59.104 52.381 0.00 0.00 0.00 2.85
474 476 2.011122 AGACGAAGACAAGGGGAGAA 57.989 50.000 0.00 0.00 0.00 2.87
475 477 2.893215 TAGACGAAGACAAGGGGAGA 57.107 50.000 0.00 0.00 0.00 3.71
476 478 3.292460 AGATAGACGAAGACAAGGGGAG 58.708 50.000 0.00 0.00 0.00 4.30
477 479 3.053544 AGAGATAGACGAAGACAAGGGGA 60.054 47.826 0.00 0.00 0.00 4.81
478 480 3.292460 AGAGATAGACGAAGACAAGGGG 58.708 50.000 0.00 0.00 0.00 4.79
479 481 4.204012 AGAGAGATAGACGAAGACAAGGG 58.796 47.826 0.00 0.00 0.00 3.95
480 482 5.007626 CAGAGAGAGATAGACGAAGACAAGG 59.992 48.000 0.00 0.00 0.00 3.61
481 483 5.504010 GCAGAGAGAGATAGACGAAGACAAG 60.504 48.000 0.00 0.00 0.00 3.16
482 484 4.334203 GCAGAGAGAGATAGACGAAGACAA 59.666 45.833 0.00 0.00 0.00 3.18
483 485 3.874543 GCAGAGAGAGATAGACGAAGACA 59.125 47.826 0.00 0.00 0.00 3.41
484 486 4.127171 AGCAGAGAGAGATAGACGAAGAC 58.873 47.826 0.00 0.00 0.00 3.01
485 487 4.100963 AGAGCAGAGAGAGATAGACGAAGA 59.899 45.833 0.00 0.00 0.00 2.87
486 488 4.380531 AGAGCAGAGAGAGATAGACGAAG 58.619 47.826 0.00 0.00 0.00 3.79
487 489 4.377021 GAGAGCAGAGAGAGATAGACGAA 58.623 47.826 0.00 0.00 0.00 3.85
488 490 3.244078 GGAGAGCAGAGAGAGATAGACGA 60.244 52.174 0.00 0.00 0.00 4.20
489 491 3.067106 GGAGAGCAGAGAGAGATAGACG 58.933 54.545 0.00 0.00 0.00 4.18
490 492 4.202357 TGAGGAGAGCAGAGAGAGATAGAC 60.202 50.000 0.00 0.00 0.00 2.59
491 493 3.973305 TGAGGAGAGCAGAGAGAGATAGA 59.027 47.826 0.00 0.00 0.00 1.98
492 494 4.067896 GTGAGGAGAGCAGAGAGAGATAG 58.932 52.174 0.00 0.00 0.00 2.08
493 495 3.181445 GGTGAGGAGAGCAGAGAGAGATA 60.181 52.174 0.00 0.00 0.00 1.98
494 496 2.423373 GGTGAGGAGAGCAGAGAGAGAT 60.423 54.545 0.00 0.00 0.00 2.75
495 497 1.064758 GGTGAGGAGAGCAGAGAGAGA 60.065 57.143 0.00 0.00 0.00 3.10
496 498 1.064463 AGGTGAGGAGAGCAGAGAGAG 60.064 57.143 0.00 0.00 0.00 3.20
497 499 0.998928 AGGTGAGGAGAGCAGAGAGA 59.001 55.000 0.00 0.00 0.00 3.10
498 500 2.687935 GTTAGGTGAGGAGAGCAGAGAG 59.312 54.545 0.00 0.00 0.00 3.20
499 501 2.621929 GGTTAGGTGAGGAGAGCAGAGA 60.622 54.545 0.00 0.00 0.00 3.10
500 502 1.754226 GGTTAGGTGAGGAGAGCAGAG 59.246 57.143 0.00 0.00 0.00 3.35
501 503 1.619977 GGGTTAGGTGAGGAGAGCAGA 60.620 57.143 0.00 0.00 0.00 4.26
502 504 0.827368 GGGTTAGGTGAGGAGAGCAG 59.173 60.000 0.00 0.00 0.00 4.24
503 505 0.970937 CGGGTTAGGTGAGGAGAGCA 60.971 60.000 0.00 0.00 0.00 4.26
504 506 0.683504 TCGGGTTAGGTGAGGAGAGC 60.684 60.000 0.00 0.00 0.00 4.09
505 507 2.074729 ATCGGGTTAGGTGAGGAGAG 57.925 55.000 0.00 0.00 0.00 3.20
506 508 2.544844 AATCGGGTTAGGTGAGGAGA 57.455 50.000 0.00 0.00 0.00 3.71
507 509 2.364647 GGTAATCGGGTTAGGTGAGGAG 59.635 54.545 0.00 0.00 0.00 3.69
508 510 2.391678 GGTAATCGGGTTAGGTGAGGA 58.608 52.381 0.00 0.00 0.00 3.71
509 511 1.415289 GGGTAATCGGGTTAGGTGAGG 59.585 57.143 0.00 0.00 0.00 3.86
510 512 2.395619 AGGGTAATCGGGTTAGGTGAG 58.604 52.381 0.00 0.00 0.00 3.51
511 513 2.555732 AGGGTAATCGGGTTAGGTGA 57.444 50.000 0.00 0.00 0.00 4.02
512 514 2.770232 AGAAGGGTAATCGGGTTAGGTG 59.230 50.000 0.00 0.00 0.00 4.00
513 515 3.036819 GAGAAGGGTAATCGGGTTAGGT 58.963 50.000 0.00 0.00 0.00 3.08
514 516 2.367894 GGAGAAGGGTAATCGGGTTAGG 59.632 54.545 0.00 0.00 0.00 2.69
515 517 2.367894 GGGAGAAGGGTAATCGGGTTAG 59.632 54.545 0.00 0.00 0.00 2.34
516 518 2.401568 GGGAGAAGGGTAATCGGGTTA 58.598 52.381 0.00 0.00 0.00 2.85
517 519 1.210538 GGGAGAAGGGTAATCGGGTT 58.789 55.000 0.00 0.00 0.00 4.11
518 520 0.693430 GGGGAGAAGGGTAATCGGGT 60.693 60.000 0.00 0.00 0.00 5.28
519 521 1.416480 GGGGGAGAAGGGTAATCGGG 61.416 65.000 0.00 0.00 0.00 5.14
520 522 0.400093 AGGGGGAGAAGGGTAATCGG 60.400 60.000 0.00 0.00 0.00 4.18
521 523 0.759346 CAGGGGGAGAAGGGTAATCG 59.241 60.000 0.00 0.00 0.00 3.34
522 524 1.490910 CACAGGGGGAGAAGGGTAATC 59.509 57.143 0.00 0.00 0.00 1.75
523 525 1.596496 CACAGGGGGAGAAGGGTAAT 58.404 55.000 0.00 0.00 0.00 1.89
524 526 1.205460 GCACAGGGGGAGAAGGGTAA 61.205 60.000 0.00 0.00 0.00 2.85
525 527 1.615424 GCACAGGGGGAGAAGGGTA 60.615 63.158 0.00 0.00 0.00 3.69
526 528 2.936032 GCACAGGGGGAGAAGGGT 60.936 66.667 0.00 0.00 0.00 4.34
527 529 4.101448 CGCACAGGGGGAGAAGGG 62.101 72.222 0.00 0.00 0.00 3.95
528 530 2.317149 GATCGCACAGGGGGAGAAGG 62.317 65.000 0.00 0.00 42.26 3.46
529 531 1.144936 GATCGCACAGGGGGAGAAG 59.855 63.158 0.00 0.00 42.26 2.85
530 532 2.721167 CGATCGCACAGGGGGAGAA 61.721 63.158 0.26 0.00 42.26 2.87
531 533 2.928988 ATCGATCGCACAGGGGGAGA 62.929 60.000 11.09 0.00 42.26 3.71
532 534 2.427540 GATCGATCGCACAGGGGGAG 62.428 65.000 11.09 0.00 42.26 4.30
533 535 2.443952 ATCGATCGCACAGGGGGA 60.444 61.111 11.09 0.00 43.25 4.81
534 536 2.029666 GATCGATCGCACAGGGGG 59.970 66.667 11.09 0.00 0.00 5.40
535 537 2.029666 GGATCGATCGCACAGGGG 59.970 66.667 18.81 0.00 0.00 4.79
536 538 2.029666 GGGATCGATCGCACAGGG 59.970 66.667 31.00 0.00 39.31 4.45
537 539 1.006805 GAGGGATCGATCGCACAGG 60.007 63.158 35.12 0.00 41.67 4.00
538 540 1.198867 CTAGAGGGATCGATCGCACAG 59.801 57.143 35.12 25.57 41.67 3.66
539 541 1.202770 TCTAGAGGGATCGATCGCACA 60.203 52.381 35.12 21.79 41.67 4.57
540 542 1.466950 CTCTAGAGGGATCGATCGCAC 59.533 57.143 35.12 30.29 41.67 5.34
541 543 1.072489 ACTCTAGAGGGATCGATCGCA 59.928 52.381 35.12 19.39 41.67 5.10
542 544 1.816074 ACTCTAGAGGGATCGATCGC 58.184 55.000 29.44 29.44 39.75 4.58
543 545 3.403968 TGAACTCTAGAGGGATCGATCG 58.596 50.000 23.50 9.36 0.00 3.69
544 546 4.094294 CGATGAACTCTAGAGGGATCGATC 59.906 50.000 28.68 17.36 37.22 3.69
545 547 4.006989 CGATGAACTCTAGAGGGATCGAT 58.993 47.826 28.68 17.68 37.22 3.59
546 548 3.403968 CGATGAACTCTAGAGGGATCGA 58.596 50.000 28.68 15.09 37.22 3.59
547 549 2.486203 CCGATGAACTCTAGAGGGATCG 59.514 54.545 27.14 27.14 36.02 3.69
548 550 3.492337 ACCGATGAACTCTAGAGGGATC 58.508 50.000 23.50 17.81 0.00 3.36
549 551 3.492337 GACCGATGAACTCTAGAGGGAT 58.508 50.000 23.50 11.70 0.00 3.85
550 552 2.745482 CGACCGATGAACTCTAGAGGGA 60.745 54.545 23.50 7.34 0.00 4.20
551 553 1.604755 CGACCGATGAACTCTAGAGGG 59.395 57.143 23.50 15.40 0.00 4.30
552 554 2.288458 GACGACCGATGAACTCTAGAGG 59.712 54.545 23.50 7.51 0.00 3.69
553 555 2.937149 TGACGACCGATGAACTCTAGAG 59.063 50.000 18.49 18.49 0.00 2.43
554 556 2.676839 GTGACGACCGATGAACTCTAGA 59.323 50.000 0.00 0.00 0.00 2.43
555 557 2.418976 TGTGACGACCGATGAACTCTAG 59.581 50.000 0.00 0.00 0.00 2.43
556 558 2.418976 CTGTGACGACCGATGAACTCTA 59.581 50.000 0.00 0.00 0.00 2.43
557 559 1.200252 CTGTGACGACCGATGAACTCT 59.800 52.381 0.00 0.00 0.00 3.24
558 560 1.618861 CTGTGACGACCGATGAACTC 58.381 55.000 0.00 0.00 0.00 3.01
559 561 0.388649 GCTGTGACGACCGATGAACT 60.389 55.000 0.00 0.00 0.00 3.01
560 562 1.352156 GGCTGTGACGACCGATGAAC 61.352 60.000 0.00 0.00 0.00 3.18
561 563 1.080093 GGCTGTGACGACCGATGAA 60.080 57.895 0.00 0.00 0.00 2.57
562 564 2.571757 GGCTGTGACGACCGATGA 59.428 61.111 0.00 0.00 0.00 2.92
563 565 2.509336 GGGCTGTGACGACCGATG 60.509 66.667 0.00 0.00 0.00 3.84
564 566 3.771160 GGGGCTGTGACGACCGAT 61.771 66.667 0.00 0.00 30.57 4.18
571 573 3.660111 GTTGCGTGGGGCTGTGAC 61.660 66.667 0.00 0.00 44.05 3.67
572 574 4.947147 GGTTGCGTGGGGCTGTGA 62.947 66.667 0.00 0.00 44.05 3.58
573 575 4.954970 AGGTTGCGTGGGGCTGTG 62.955 66.667 0.00 0.00 44.05 3.66
574 576 4.643387 GAGGTTGCGTGGGGCTGT 62.643 66.667 0.00 0.00 44.05 4.40
801 803 8.933807 GTGATAGGTTAGTTCTCTTTTTGTACC 58.066 37.037 0.00 0.00 0.00 3.34
893 921 2.128035 CGCCCGAATCAGACTATTGAC 58.872 52.381 0.00 0.00 0.00 3.18
1033 1066 0.807667 CTTCATCTGAGAACCCGCCG 60.808 60.000 0.00 0.00 0.00 6.46
1064 1103 1.222936 GTACCTGCAGCTGCCATCT 59.777 57.895 34.64 17.03 41.18 2.90
1667 1719 3.367025 CCTTCAAGAATTCGTCACCGTAC 59.633 47.826 0.00 0.00 35.01 3.67
1676 1728 5.023533 TCCATAGACCCTTCAAGAATTCG 57.976 43.478 0.00 0.00 0.00 3.34
1816 1873 1.959899 GCCGCACACTCTCAATGTCG 61.960 60.000 0.00 0.00 0.00 4.35
1827 1884 1.300971 ACATGTCTCATGCCGCACAC 61.301 55.000 9.27 0.00 0.00 3.82
1832 1889 2.995466 AAAACACATGTCTCATGCCG 57.005 45.000 0.00 4.45 0.00 5.69
1854 1911 5.749462 AGCTAAGGAGATAACAAGCAACAT 58.251 37.500 0.00 0.00 32.42 2.71
2137 2198 9.422681 AGAAATAGAGGCTTTACTGATGTAGTA 57.577 33.333 0.00 0.00 40.89 1.82
2138 2199 8.312669 AGAAATAGAGGCTTTACTGATGTAGT 57.687 34.615 0.00 0.00 43.56 2.73
2139 2200 8.417106 TGAGAAATAGAGGCTTTACTGATGTAG 58.583 37.037 0.00 0.00 0.00 2.74
2168 2229 7.775053 ACCCAAAACAAGCAAAATCTATCTA 57.225 32.000 0.00 0.00 0.00 1.98
2192 2253 1.955451 TTCCCCGGAAGCCTAAACTA 58.045 50.000 0.73 0.00 0.00 2.24
2240 2301 6.698380 AGTACACTGGAAACTCGATAATTGT 58.302 36.000 0.00 0.00 0.00 2.71
2285 2346 1.199097 ACTTAGCAAACGAAATGCCGG 59.801 47.619 0.00 0.00 44.91 6.13
2312 2373 1.856265 GCCGAGTCCTGTTTGCCAAG 61.856 60.000 0.00 0.00 0.00 3.61
2378 2439 7.811713 GGAGTACTATTTAAGTGTTTGTCGAGT 59.188 37.037 0.00 0.00 39.39 4.18
2397 2458 4.635699 ATTTTGAAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
2398 2459 8.496707 TTTATATTTTGAAACGGAGGGAGTAC 57.503 34.615 0.00 0.00 0.00 2.73
2399 2460 9.333724 GATTTATATTTTGAAACGGAGGGAGTA 57.666 33.333 0.00 0.00 0.00 2.59
2400 2461 8.053355 AGATTTATATTTTGAAACGGAGGGAGT 58.947 33.333 0.00 0.00 0.00 3.85
2401 2462 8.451908 AGATTTATATTTTGAAACGGAGGGAG 57.548 34.615 0.00 0.00 0.00 4.30
2402 2463 8.817092 AAGATTTATATTTTGAAACGGAGGGA 57.183 30.769 0.00 0.00 0.00 4.20
2403 2464 9.301153 CAAAGATTTATATTTTGAAACGGAGGG 57.699 33.333 0.00 0.00 34.55 4.30
2404 2465 9.855021 ACAAAGATTTATATTTTGAAACGGAGG 57.145 29.630 4.27 0.00 36.09 4.30
2424 2485 9.268268 AGTCACGTATTGAAATTTCTACAAAGA 57.732 29.630 18.64 8.81 35.39 2.52
2427 2488 9.478768 TGTAGTCACGTATTGAAATTTCTACAA 57.521 29.630 18.64 6.51 36.55 2.41
2428 2489 9.647797 ATGTAGTCACGTATTGAAATTTCTACA 57.352 29.630 18.64 13.78 40.42 2.74
2431 2492 8.804743 CGTATGTAGTCACGTATTGAAATTTCT 58.195 33.333 18.64 2.61 35.39 2.52
2432 2493 8.054236 CCGTATGTAGTCACGTATTGAAATTTC 58.946 37.037 11.41 11.41 35.39 2.17
2433 2494 7.760794 TCCGTATGTAGTCACGTATTGAAATTT 59.239 33.333 0.00 0.00 35.39 1.82
2434 2495 7.259882 TCCGTATGTAGTCACGTATTGAAATT 58.740 34.615 0.00 0.00 35.39 1.82
2435 2496 6.798482 TCCGTATGTAGTCACGTATTGAAAT 58.202 36.000 0.00 0.00 35.39 2.17
2436 2497 6.193514 TCCGTATGTAGTCACGTATTGAAA 57.806 37.500 0.00 0.00 35.39 2.69
2437 2498 5.731406 GCTCCGTATGTAGTCACGTATTGAA 60.731 44.000 0.00 0.00 35.39 2.69
2438 2499 4.260907 GCTCCGTATGTAGTCACGTATTGA 60.261 45.833 0.00 0.00 36.44 2.57
2439 2500 3.973135 GCTCCGTATGTAGTCACGTATTG 59.027 47.826 0.00 0.00 36.44 1.90
2440 2501 3.628942 TGCTCCGTATGTAGTCACGTATT 59.371 43.478 0.00 0.00 36.44 1.89
2441 2502 3.208594 TGCTCCGTATGTAGTCACGTAT 58.791 45.455 0.00 0.00 36.44 3.06
2442 2503 2.631267 TGCTCCGTATGTAGTCACGTA 58.369 47.619 0.00 0.00 36.44 3.57
2443 2504 1.456296 TGCTCCGTATGTAGTCACGT 58.544 50.000 0.00 0.00 36.44 4.49
2444 2505 2.554806 TTGCTCCGTATGTAGTCACG 57.445 50.000 0.00 0.00 37.89 4.35
2445 2506 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2446 2507 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2447 2508 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2448 2509 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2449 2510 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2450 2511 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2451 2512 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2452 2513 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2453 2514 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2454 2515 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2455 2516 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2456 2517 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2457 2518 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
2458 2519 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
2459 2520 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2497 2558 9.214957 CAAATGGTATACAACATACGGATGTAT 57.785 33.333 15.10 8.21 45.93 2.29
2498 2559 8.422566 TCAAATGGTATACAACATACGGATGTA 58.577 33.333 15.10 0.00 45.93 2.29
2500 2561 7.722795 TCAAATGGTATACAACATACGGATG 57.277 36.000 5.94 5.94 39.16 3.51
2501 2562 8.740123 TTTCAAATGGTATACAACATACGGAT 57.260 30.769 5.01 0.00 0.00 4.18
2502 2563 8.616942 CATTTCAAATGGTATACAACATACGGA 58.383 33.333 5.01 0.00 0.00 4.69
2503 2564 8.402472 ACATTTCAAATGGTATACAACATACGG 58.598 33.333 14.70 0.00 0.00 4.02
2504 2565 9.433317 GACATTTCAAATGGTATACAACATACG 57.567 33.333 14.70 0.00 0.00 3.06
2542 2603 9.822185 GCAATTACTTCCTTCATTCCAAAATAT 57.178 29.630 0.00 0.00 0.00 1.28
2543 2604 8.257306 GGCAATTACTTCCTTCATTCCAAAATA 58.743 33.333 0.00 0.00 0.00 1.40
2544 2605 7.105588 GGCAATTACTTCCTTCATTCCAAAAT 58.894 34.615 0.00 0.00 0.00 1.82
2545 2606 6.042552 TGGCAATTACTTCCTTCATTCCAAAA 59.957 34.615 0.00 0.00 0.00 2.44
2546 2607 5.541868 TGGCAATTACTTCCTTCATTCCAAA 59.458 36.000 0.00 0.00 0.00 3.28
2547 2608 5.083122 TGGCAATTACTTCCTTCATTCCAA 58.917 37.500 0.00 0.00 0.00 3.53
2548 2609 4.671831 TGGCAATTACTTCCTTCATTCCA 58.328 39.130 0.00 0.00 0.00 3.53
2549 2610 5.185828 ACTTGGCAATTACTTCCTTCATTCC 59.814 40.000 0.00 0.00 0.00 3.01
2550 2611 6.272822 ACTTGGCAATTACTTCCTTCATTC 57.727 37.500 0.00 0.00 0.00 2.67
2551 2612 6.670695 AACTTGGCAATTACTTCCTTCATT 57.329 33.333 0.00 0.00 0.00 2.57
2552 2613 6.670695 AAACTTGGCAATTACTTCCTTCAT 57.329 33.333 0.00 0.00 0.00 2.57
2553 2614 6.279882 CAAAACTTGGCAATTACTTCCTTCA 58.720 36.000 0.00 0.00 0.00 3.02
2554 2615 5.696270 CCAAAACTTGGCAATTACTTCCTTC 59.304 40.000 0.00 0.00 45.17 3.46
2555 2616 5.610398 CCAAAACTTGGCAATTACTTCCTT 58.390 37.500 0.00 0.00 45.17 3.36
2556 2617 5.213891 CCAAAACTTGGCAATTACTTCCT 57.786 39.130 0.00 0.00 45.17 3.36
2620 2681 3.446799 CCACATGAATGCCCATTAAACG 58.553 45.455 0.00 0.00 0.00 3.60
2638 2699 0.951040 CTCGACAAAGGTCTGGCCAC 60.951 60.000 0.00 0.00 42.05 5.01
2663 2729 0.388263 GAGTTTGGTCGGACGAGGAC 60.388 60.000 1.43 1.87 0.00 3.85
2664 2730 1.859427 CGAGTTTGGTCGGACGAGGA 61.859 60.000 1.43 0.00 36.26 3.71
2665 2731 1.443872 CGAGTTTGGTCGGACGAGG 60.444 63.158 1.43 0.00 36.26 4.63
2666 2732 4.148230 CGAGTTTGGTCGGACGAG 57.852 61.111 1.43 0.00 36.26 4.18
2683 2749 1.369625 CTACTCGTTGATGGGTTGCC 58.630 55.000 0.00 0.00 0.00 4.52
2690 2759 0.824109 TGAGCCCCTACTCGTTGATG 59.176 55.000 0.00 0.00 39.68 3.07
2725 2794 6.517914 TCAACAAACAACAACTCAACAAAC 57.482 33.333 0.00 0.00 0.00 2.93
2739 2808 4.099266 AGCTATGCCAAGTTTCAACAAACA 59.901 37.500 0.00 0.00 43.98 2.83
2780 2849 2.734673 GCTCGTCAAAGCTCTGCGG 61.735 63.158 4.47 0.00 39.27 5.69
2787 2856 1.867233 TGAGAAGTTGCTCGTCAAAGC 59.133 47.619 0.00 0.00 42.82 3.51
2807 2876 2.097466 GGCATAAGCTTGTGCATACGTT 59.903 45.455 38.11 0.89 45.65 3.99
2811 2880 3.355378 ACTTGGCATAAGCTTGTGCATA 58.645 40.909 38.11 27.41 45.65 3.14
2852 2921 7.148641 ACAAATCTAGCATCTACTCGTATTGG 58.851 38.462 0.00 0.00 0.00 3.16
2947 3016 8.964533 AGTTCCTGATTCCTATAGTGATATGT 57.035 34.615 0.00 0.00 0.00 2.29
2951 3020 8.214364 GGAAAAGTTCCTGATTCCTATAGTGAT 58.786 37.037 0.00 0.00 46.57 3.06
2952 3021 7.565680 GGAAAAGTTCCTGATTCCTATAGTGA 58.434 38.462 0.00 0.00 46.57 3.41
2953 3022 7.793927 GGAAAAGTTCCTGATTCCTATAGTG 57.206 40.000 0.00 0.00 46.57 2.74
2967 3036 1.598685 TGGCGGACGGAAAAGTTCC 60.599 57.895 0.00 0.00 46.62 3.62
2968 3037 1.572941 GTGGCGGACGGAAAAGTTC 59.427 57.895 0.00 0.00 0.00 3.01
2969 3038 2.248835 CGTGGCGGACGGAAAAGTT 61.249 57.895 0.00 0.00 44.85 2.66
2970 3039 2.663852 CGTGGCGGACGGAAAAGT 60.664 61.111 0.00 0.00 44.85 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.