Multiple sequence alignment - TraesCS2D01G352500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G352500 chr2D 100.000 3327 0 0 1 3327 450917114 450920440 0.000000e+00 6144.0
1 TraesCS2D01G352500 chr2D 92.841 447 28 4 2761 3204 557687329 557686884 0.000000e+00 645.0
2 TraesCS2D01G352500 chr2D 92.617 447 29 4 2761 3204 401552572 401552127 1.010000e-179 640.0
3 TraesCS2D01G352500 chr2D 95.041 121 4 1 3207 3327 419458465 419458347 4.380000e-44 189.0
4 TraesCS2D01G352500 chr2A 91.238 2739 149 31 1 2719 598643558 598640891 0.000000e+00 3644.0
5 TraesCS2D01G352500 chr2B 90.794 2759 140 53 1 2719 531052041 531054725 0.000000e+00 3583.0
6 TraesCS2D01G352500 chr7D 85.841 678 78 13 2 667 233198122 233198793 0.000000e+00 704.0
7 TraesCS2D01G352500 chr7D 92.841 447 29 3 2761 3204 46760920 46761366 0.000000e+00 645.0
8 TraesCS2D01G352500 chr7D 96.667 120 3 1 3208 3327 395931846 395931964 7.280000e-47 198.0
9 TraesCS2D01G352500 chr7D 95.041 121 5 1 3207 3327 494614774 494614893 4.380000e-44 189.0
10 TraesCS2D01G352500 chr6A 86.624 628 76 5 1 624 524758033 524758656 0.000000e+00 688.0
11 TraesCS2D01G352500 chr6A 84.763 676 88 7 1 667 572593288 572592619 0.000000e+00 664.0
12 TraesCS2D01G352500 chr3D 85.498 662 82 8 16 667 512502900 512503557 0.000000e+00 678.0
13 TraesCS2D01G352500 chr3D 84.421 674 91 10 1 666 188414687 188414020 0.000000e+00 651.0
14 TraesCS2D01G352500 chr3D 95.833 120 4 1 3208 3327 53407601 53407719 3.390000e-45 193.0
15 TraesCS2D01G352500 chr7B 85.037 675 87 10 2 667 204667676 204668345 0.000000e+00 675.0
16 TraesCS2D01G352500 chr5D 93.736 447 25 3 2761 3204 45650307 45649861 0.000000e+00 667.0
17 TraesCS2D01G352500 chr4D 93.512 447 25 4 2761 3204 8158403 8158848 0.000000e+00 662.0
18 TraesCS2D01G352500 chr4D 95.798 119 4 1 3209 3327 401068037 401067920 1.220000e-44 191.0
19 TraesCS2D01G352500 chr4D 84.615 143 22 0 1079 1221 81666364 81666222 3.460000e-30 143.0
20 TraesCS2D01G352500 chr4D 84.211 76 10 2 1143 1217 394379266 394379192 4.600000e-09 73.1
21 TraesCS2D01G352500 chr1A 84.683 679 80 14 3 666 66710639 66709970 0.000000e+00 656.0
22 TraesCS2D01G352500 chr1D 93.049 446 28 3 2761 3203 45395362 45395807 0.000000e+00 649.0
23 TraesCS2D01G352500 chr1D 92.841 447 28 4 2761 3204 431094523 431094078 0.000000e+00 645.0
24 TraesCS2D01G352500 chr1D 95.833 120 4 1 3208 3327 456630740 456630622 3.390000e-45 193.0
25 TraesCS2D01G352500 chr1D 95.041 121 3 2 3208 3327 81452999 81452881 1.580000e-43 187.0
26 TraesCS2D01G352500 chr4B 92.291 454 30 5 2755 3204 97124864 97124412 1.010000e-179 640.0
27 TraesCS2D01G352500 chr6D 92.601 446 30 3 2761 3203 26355667 26355222 3.620000e-179 638.0
28 TraesCS2D01G352500 chr6D 96.639 119 3 1 3208 3326 447053331 447053214 2.620000e-46 196.0
29 TraesCS2D01G352500 chr6D 95.833 120 4 1 3208 3327 421552800 421552918 3.390000e-45 193.0
30 TraesCS2D01G352500 chr4A 93.617 47 3 0 1171 1217 75843177 75843131 1.660000e-08 71.3
31 TraesCS2D01G352500 chr5B 94.286 35 2 0 1190 1224 428963176 428963142 2.000000e-03 54.7
32 TraesCS2D01G352500 chr5A 92.308 39 2 1 1190 1227 463765908 463765870 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G352500 chr2D 450917114 450920440 3326 False 6144 6144 100.000 1 3327 1 chr2D.!!$F1 3326
1 TraesCS2D01G352500 chr2A 598640891 598643558 2667 True 3644 3644 91.238 1 2719 1 chr2A.!!$R1 2718
2 TraesCS2D01G352500 chr2B 531052041 531054725 2684 False 3583 3583 90.794 1 2719 1 chr2B.!!$F1 2718
3 TraesCS2D01G352500 chr7D 233198122 233198793 671 False 704 704 85.841 2 667 1 chr7D.!!$F2 665
4 TraesCS2D01G352500 chr6A 524758033 524758656 623 False 688 688 86.624 1 624 1 chr6A.!!$F1 623
5 TraesCS2D01G352500 chr6A 572592619 572593288 669 True 664 664 84.763 1 667 1 chr6A.!!$R1 666
6 TraesCS2D01G352500 chr3D 512502900 512503557 657 False 678 678 85.498 16 667 1 chr3D.!!$F2 651
7 TraesCS2D01G352500 chr3D 188414020 188414687 667 True 651 651 84.421 1 666 1 chr3D.!!$R1 665
8 TraesCS2D01G352500 chr7B 204667676 204668345 669 False 675 675 85.037 2 667 1 chr7B.!!$F1 665
9 TraesCS2D01G352500 chr1A 66709970 66710639 669 True 656 656 84.683 3 666 1 chr1A.!!$R1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 657 0.034756 TGCGGAATGTATGCGGCTAT 59.965 50.0 0.0 0.0 43.91 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2620 2681 0.248289 ACCAACACGCCGCTACTTAT 59.752 50.0 0.0 0.0 0.0 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.421388 CCATGGATTTCGTAGGCAGGAA 60.421 50.000 5.56 0.00 0.00 3.36
127 128 3.125487 TGAAAAGTTTCACGCACGAAAGA 59.875 39.130 2.32 0.00 41.88 2.52
185 186 2.891391 CAATGTGAAGTCGTTGTCGTG 58.109 47.619 0.00 0.00 38.33 4.35
228 231 0.040425 GCGTCACCAAGTTTTGCGAT 60.040 50.000 0.00 0.00 0.00 4.58
255 258 1.908299 TCAGCTCGAGGCAAGGTGA 60.908 57.895 15.58 6.99 46.03 4.02
266 269 2.330254 CAAGGTGACCATTGCACGT 58.670 52.632 3.63 0.00 37.13 4.49
289 292 3.182967 GCAGAGGACGAGATTGTAAGTG 58.817 50.000 0.00 0.00 0.00 3.16
290 293 3.182967 CAGAGGACGAGATTGTAAGTGC 58.817 50.000 0.00 0.00 0.00 4.40
305 308 2.758736 AGTGCTACTTCCTCTTGCTG 57.241 50.000 0.00 0.00 0.00 4.41
347 350 4.430007 TCACTCAATATTGGTCTACACGC 58.570 43.478 15.36 0.00 0.00 5.34
464 472 1.135527 GTGGGACGACATGATCCGTTA 59.864 52.381 0.00 0.00 39.30 3.18
541 550 9.713713 TTGTACTAGACTTATTTGCATGTTACA 57.286 29.630 0.00 0.00 0.00 2.41
599 609 2.147958 GAATATCGGCCGGTTTGCATA 58.852 47.619 27.83 14.92 0.00 3.14
641 657 0.034756 TGCGGAATGTATGCGGCTAT 59.965 50.000 0.00 0.00 43.91 2.97
642 658 1.273886 TGCGGAATGTATGCGGCTATA 59.726 47.619 0.00 0.00 43.91 1.31
682 698 2.104451 ACATCCAGCCAGCTGATTAGAG 59.896 50.000 21.01 3.24 46.30 2.43
685 701 1.202627 CCAGCCAGCTGATTAGAGTCC 60.203 57.143 21.01 0.00 46.30 3.85
705 721 8.302438 AGAGTCCTTTTCTGCAAATAAGAAATG 58.698 33.333 0.00 2.65 41.86 2.32
758 774 1.289380 GTTCGGGCTGAGACGTCTT 59.711 57.895 21.08 3.07 0.00 3.01
844 862 0.598419 TCACACAGCGCTGAAGACAG 60.598 55.000 42.03 24.73 45.91 3.51
972 993 4.460382 ACAAGAATATTTCCCTGTGCAGTG 59.540 41.667 0.00 0.00 0.00 3.66
1088 1121 2.433318 GCACGGTCAGCTCCAGAC 60.433 66.667 0.00 0.00 35.29 3.51
1260 1293 0.107017 AATGGCCGATGCAGTTAGCT 60.107 50.000 0.00 0.00 45.94 3.32
1297 1341 2.611518 GTAGCAGCGAGTGAGTGATTT 58.388 47.619 0.00 0.00 0.00 2.17
1299 1343 2.886081 AGCAGCGAGTGAGTGATTTAG 58.114 47.619 0.00 0.00 0.00 1.85
1591 1635 2.126071 CGGGAACTCGTGATGCGT 60.126 61.111 0.00 0.00 42.13 5.24
1593 1637 2.100631 GGGAACTCGTGATGCGTGG 61.101 63.158 0.00 0.00 42.13 4.94
1594 1638 1.374252 GGAACTCGTGATGCGTGGT 60.374 57.895 0.00 0.00 42.13 4.16
1595 1639 1.626654 GGAACTCGTGATGCGTGGTG 61.627 60.000 0.00 0.00 42.13 4.17
1596 1640 0.666274 GAACTCGTGATGCGTGGTGA 60.666 55.000 0.00 0.00 42.13 4.02
1626 1670 1.405463 ACGATCGAGATGCTGCTTGTA 59.595 47.619 24.34 0.00 0.00 2.41
1749 1793 1.712018 CGGACGTGAGCGACTCCATA 61.712 60.000 0.00 0.00 42.00 2.74
1806 1850 2.504244 GACCGCGACCTCGTTCTG 60.504 66.667 8.23 0.00 42.22 3.02
1809 1853 3.175240 CGCGACCTCGTTCTGCTG 61.175 66.667 0.00 0.00 42.22 4.41
1900 1945 4.000557 CCGCCGCGACATGCATAC 62.001 66.667 15.93 0.00 46.97 2.39
1948 1993 0.784778 CGTGCTTCTTCGTCAAGGAC 59.215 55.000 5.69 5.69 38.48 3.85
2236 2281 0.794605 GCTTCGCGCAGGATTTTGTC 60.795 55.000 8.75 0.00 38.92 3.18
2258 2303 1.848932 CGCCATGATCAAGATGGGCG 61.849 60.000 23.69 23.69 40.80 6.13
2431 2485 9.504708 TGAAATGAAGTAAATTGGCATGATTTT 57.495 25.926 0.00 0.00 0.00 1.82
2459 2513 8.029522 TCAGTACTCCAATATTGATAATCGAGC 58.970 37.037 17.23 2.75 0.00 5.03
2462 2516 9.803315 GTACTCCAATATTGATAATCGAGCATA 57.197 33.333 17.23 1.39 0.00 3.14
2498 2552 7.756395 AAGATTGCATTTTCATCGGATAGAT 57.244 32.000 0.00 0.00 41.01 1.98
2515 2569 5.749109 GGATAGATGGACGAGTTGTTAACAG 59.251 44.000 8.56 0.00 0.00 3.16
2523 2584 3.242188 ACGAGTTGTTAACAGCGTGTTTC 60.242 43.478 23.28 12.87 41.45 2.78
2568 2629 4.211584 CAGCAGTTAATGTGCAATGCAAAA 59.788 37.500 10.44 1.15 43.82 2.44
2573 2634 7.408123 CAGTTAATGTGCAATGCAAAAGAAAA 58.592 30.769 10.44 0.00 41.47 2.29
2574 2635 7.584847 CAGTTAATGTGCAATGCAAAAGAAAAG 59.415 33.333 10.44 0.00 41.47 2.27
2579 2640 6.313252 TGTGCAATGCAAAAGAAAAGAAAAC 58.687 32.000 10.44 0.00 41.47 2.43
2586 2647 4.026558 GCAAAAGAAAAGAAAACTCGCAGG 60.027 41.667 0.00 0.00 0.00 4.85
2682 2743 4.635765 TGCCGATTTAATGTTCTCAAGGAG 59.364 41.667 0.00 0.00 0.00 3.69
2705 2770 4.197498 GGCGCCCATGCATGTGAC 62.197 66.667 24.58 12.86 37.32 3.67
2719 2784 2.979814 TGTGACTGCACTGTGTACTT 57.020 45.000 9.86 0.00 45.36 2.24
2720 2785 3.260475 TGTGACTGCACTGTGTACTTT 57.740 42.857 9.86 0.00 45.36 2.66
2721 2786 3.605634 TGTGACTGCACTGTGTACTTTT 58.394 40.909 9.86 0.00 45.36 2.27
2722 2787 4.006989 TGTGACTGCACTGTGTACTTTTT 58.993 39.130 9.86 0.00 45.36 1.94
2741 2806 2.842208 TTTTTGCGGACAGAACTGTG 57.158 45.000 12.29 0.44 45.05 3.66
2742 2807 1.745232 TTTTGCGGACAGAACTGTGT 58.255 45.000 12.29 0.00 45.05 3.72
2743 2808 2.605837 TTTGCGGACAGAACTGTGTA 57.394 45.000 12.29 0.00 45.05 2.90
2744 2809 1.860676 TTGCGGACAGAACTGTGTAC 58.139 50.000 12.29 2.15 45.05 2.90
2745 2810 1.037493 TGCGGACAGAACTGTGTACT 58.963 50.000 12.29 0.00 45.05 2.73
2746 2811 1.000607 TGCGGACAGAACTGTGTACTC 60.001 52.381 12.29 0.00 45.05 2.59
2747 2812 1.669211 GCGGACAGAACTGTGTACTCC 60.669 57.143 12.29 5.97 45.05 3.85
2748 2813 1.611977 CGGACAGAACTGTGTACTCCA 59.388 52.381 12.29 0.00 45.05 3.86
2749 2814 2.035449 CGGACAGAACTGTGTACTCCAA 59.965 50.000 12.29 0.00 45.05 3.53
2750 2815 3.391049 GGACAGAACTGTGTACTCCAAC 58.609 50.000 12.29 0.00 45.05 3.77
2751 2816 3.069729 GGACAGAACTGTGTACTCCAACT 59.930 47.826 12.29 0.00 45.05 3.16
2752 2817 4.051922 GACAGAACTGTGTACTCCAACTG 58.948 47.826 12.29 0.00 45.05 3.16
2753 2818 2.802816 CAGAACTGTGTACTCCAACTGC 59.197 50.000 0.00 0.00 0.00 4.40
2754 2819 1.792949 GAACTGTGTACTCCAACTGCG 59.207 52.381 0.00 0.00 0.00 5.18
2755 2820 0.750850 ACTGTGTACTCCAACTGCGT 59.249 50.000 0.00 0.00 0.00 5.24
2756 2821 1.139989 CTGTGTACTCCAACTGCGTG 58.860 55.000 0.00 0.00 0.00 5.34
2757 2822 0.462375 TGTGTACTCCAACTGCGTGT 59.538 50.000 0.00 0.00 0.00 4.49
2758 2823 1.137513 GTGTACTCCAACTGCGTGTC 58.862 55.000 0.00 0.00 0.00 3.67
2759 2824 0.747852 TGTACTCCAACTGCGTGTCA 59.252 50.000 0.00 0.00 0.00 3.58
2760 2825 1.137282 TGTACTCCAACTGCGTGTCAA 59.863 47.619 0.00 0.00 0.00 3.18
2761 2826 1.792949 GTACTCCAACTGCGTGTCAAG 59.207 52.381 0.00 0.00 0.00 3.02
2762 2827 1.160329 ACTCCAACTGCGTGTCAAGC 61.160 55.000 3.55 3.55 0.00 4.01
2763 2828 1.153269 TCCAACTGCGTGTCAAGCA 60.153 52.632 12.96 12.96 42.99 3.91
2764 2829 0.746204 TCCAACTGCGTGTCAAGCAA 60.746 50.000 14.45 0.00 44.67 3.91
2765 2830 0.592247 CCAACTGCGTGTCAAGCAAC 60.592 55.000 14.45 0.00 44.67 4.17
2766 2831 0.378257 CAACTGCGTGTCAAGCAACT 59.622 50.000 14.45 2.04 44.67 3.16
2767 2832 0.657840 AACTGCGTGTCAAGCAACTC 59.342 50.000 14.45 0.00 44.67 3.01
2768 2833 0.179073 ACTGCGTGTCAAGCAACTCT 60.179 50.000 14.45 0.00 44.67 3.24
2769 2834 1.068588 ACTGCGTGTCAAGCAACTCTA 59.931 47.619 14.45 0.00 44.67 2.43
2770 2835 1.723542 CTGCGTGTCAAGCAACTCTAG 59.276 52.381 14.45 0.00 44.67 2.43
2771 2836 0.440371 GCGTGTCAAGCAACTCTAGC 59.560 55.000 5.83 0.00 34.19 3.42
2772 2837 1.783284 CGTGTCAAGCAACTCTAGCA 58.217 50.000 0.00 0.00 0.00 3.49
2773 2838 1.723542 CGTGTCAAGCAACTCTAGCAG 59.276 52.381 0.00 0.00 0.00 4.24
2774 2839 2.608016 CGTGTCAAGCAACTCTAGCAGA 60.608 50.000 0.00 0.00 0.00 4.26
2775 2840 2.734079 GTGTCAAGCAACTCTAGCAGAC 59.266 50.000 0.00 0.00 38.75 3.51
2776 2841 2.289072 TGTCAAGCAACTCTAGCAGACC 60.289 50.000 0.00 0.00 38.02 3.85
2777 2842 1.276421 TCAAGCAACTCTAGCAGACCC 59.724 52.381 0.00 0.00 0.00 4.46
2778 2843 0.615850 AAGCAACTCTAGCAGACCCC 59.384 55.000 0.00 0.00 0.00 4.95
2779 2844 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
2780 2845 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
2781 2846 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
2782 2847 0.978146 AACTCTAGCAGACCCCGCAT 60.978 55.000 0.00 0.00 0.00 4.73
2783 2848 1.365633 CTCTAGCAGACCCCGCATC 59.634 63.158 0.00 0.00 0.00 3.91
2784 2849 2.093537 CTCTAGCAGACCCCGCATCC 62.094 65.000 0.00 0.00 0.00 3.51
2785 2850 3.506059 CTAGCAGACCCCGCATCCG 62.506 68.421 0.00 0.00 0.00 4.18
2805 2870 3.250220 CGCAAACCCGCATAATTCC 57.750 52.632 0.00 0.00 0.00 3.01
2806 2871 0.591236 CGCAAACCCGCATAATTCCG 60.591 55.000 0.00 0.00 0.00 4.30
2807 2872 0.736053 GCAAACCCGCATAATTCCGA 59.264 50.000 0.00 0.00 0.00 4.55
2808 2873 1.336755 GCAAACCCGCATAATTCCGAT 59.663 47.619 0.00 0.00 0.00 4.18
2809 2874 2.858260 GCAAACCCGCATAATTCCGATG 60.858 50.000 0.00 0.00 0.00 3.84
2810 2875 2.616376 CAAACCCGCATAATTCCGATGA 59.384 45.455 0.00 0.00 0.00 2.92
2811 2876 2.859165 ACCCGCATAATTCCGATGAT 57.141 45.000 0.00 0.00 0.00 2.45
2812 2877 3.140325 ACCCGCATAATTCCGATGATT 57.860 42.857 0.00 0.00 0.00 2.57
2813 2878 4.280436 ACCCGCATAATTCCGATGATTA 57.720 40.909 0.00 0.00 0.00 1.75
2814 2879 4.843728 ACCCGCATAATTCCGATGATTAT 58.156 39.130 0.00 0.00 0.00 1.28
2815 2880 5.984725 ACCCGCATAATTCCGATGATTATA 58.015 37.500 0.00 0.00 0.00 0.98
2816 2881 5.815740 ACCCGCATAATTCCGATGATTATAC 59.184 40.000 0.00 0.00 0.00 1.47
2817 2882 5.051039 CCCGCATAATTCCGATGATTATACG 60.051 44.000 9.25 9.25 30.85 3.06
2818 2883 5.746721 CCGCATAATTCCGATGATTATACGA 59.253 40.000 14.23 0.00 32.02 3.43
2819 2884 6.074835 CCGCATAATTCCGATGATTATACGAG 60.075 42.308 14.23 6.17 32.02 4.18
2820 2885 6.560433 CGCATAATTCCGATGATTATACGAGC 60.560 42.308 10.09 0.00 32.02 5.03
2821 2886 6.477033 GCATAATTCCGATGATTATACGAGCT 59.523 38.462 0.00 0.00 0.00 4.09
2822 2887 7.010552 GCATAATTCCGATGATTATACGAGCTT 59.989 37.037 0.00 0.00 0.00 3.74
2823 2888 6.712241 AATTCCGATGATTATACGAGCTTG 57.288 37.500 0.00 0.00 0.00 4.01
2824 2889 4.174411 TCCGATGATTATACGAGCTTGG 57.826 45.455 5.79 0.00 0.00 3.61
2825 2890 2.668457 CCGATGATTATACGAGCTTGGC 59.332 50.000 5.79 0.00 0.00 4.52
2826 2891 2.668457 CGATGATTATACGAGCTTGGCC 59.332 50.000 5.79 0.00 0.00 5.36
2827 2892 2.543777 TGATTATACGAGCTTGGCCC 57.456 50.000 5.79 0.00 0.00 5.80
2828 2893 1.765904 TGATTATACGAGCTTGGCCCA 59.234 47.619 5.79 0.00 0.00 5.36
2829 2894 2.371841 TGATTATACGAGCTTGGCCCAT 59.628 45.455 5.79 0.00 0.00 4.00
2830 2895 3.181445 TGATTATACGAGCTTGGCCCATT 60.181 43.478 5.79 0.00 0.00 3.16
2831 2896 3.290948 TTATACGAGCTTGGCCCATTT 57.709 42.857 5.79 0.00 0.00 2.32
2832 2897 2.143876 ATACGAGCTTGGCCCATTTT 57.856 45.000 5.79 0.00 0.00 1.82
2833 2898 1.917872 TACGAGCTTGGCCCATTTTT 58.082 45.000 5.79 0.00 0.00 1.94
2834 2899 0.603065 ACGAGCTTGGCCCATTTTTC 59.397 50.000 5.79 0.00 0.00 2.29
2835 2900 0.890683 CGAGCTTGGCCCATTTTTCT 59.109 50.000 0.00 0.00 0.00 2.52
2836 2901 1.403249 CGAGCTTGGCCCATTTTTCTG 60.403 52.381 0.00 0.00 0.00 3.02
2837 2902 0.978907 AGCTTGGCCCATTTTTCTGG 59.021 50.000 0.00 0.00 35.95 3.86
2838 2903 0.674581 GCTTGGCCCATTTTTCTGGC 60.675 55.000 0.00 0.00 44.59 4.85
2842 2907 2.669878 GCCCATTTTTCTGGCCAGA 58.330 52.632 32.00 32.00 39.30 3.86
2843 2908 0.247460 GCCCATTTTTCTGGCCAGAC 59.753 55.000 35.26 17.07 39.30 3.51
2844 2909 0.897621 CCCATTTTTCTGGCCAGACC 59.102 55.000 35.26 0.00 37.14 3.85
2855 2920 3.790437 CCAGACCAGAGCCCGCAT 61.790 66.667 0.00 0.00 0.00 4.73
2856 2921 2.202987 CAGACCAGAGCCCGCATC 60.203 66.667 0.00 0.00 0.00 3.91
2857 2922 3.842923 AGACCAGAGCCCGCATCG 61.843 66.667 0.00 0.00 0.00 3.84
2861 2926 4.457496 CAGAGCCCGCATCGGTGT 62.457 66.667 0.00 0.00 46.80 4.16
2862 2927 4.148825 AGAGCCCGCATCGGTGTC 62.149 66.667 0.00 0.86 46.80 3.67
2873 2938 4.376176 CGGTGTCCGGCCCGTAAA 62.376 66.667 16.10 0.00 44.15 2.01
2874 2939 2.269883 GGTGTCCGGCCCGTAAAT 59.730 61.111 0.85 0.00 0.00 1.40
2875 2940 1.377594 GGTGTCCGGCCCGTAAATT 60.378 57.895 0.85 0.00 0.00 1.82
2876 2941 0.961857 GGTGTCCGGCCCGTAAATTT 60.962 55.000 0.85 0.00 0.00 1.82
2877 2942 0.883153 GTGTCCGGCCCGTAAATTTT 59.117 50.000 0.85 0.00 0.00 1.82
2878 2943 1.270274 GTGTCCGGCCCGTAAATTTTT 59.730 47.619 0.85 0.00 0.00 1.94
2899 2964 4.306471 CGCAGCACGCAAACGGAA 62.306 61.111 0.00 0.00 46.04 4.30
2900 2965 2.725815 GCAGCACGCAAACGGAAC 60.726 61.111 0.00 0.00 46.04 3.62
2901 2966 2.051345 CAGCACGCAAACGGAACC 60.051 61.111 0.00 0.00 46.04 3.62
2902 2967 3.284449 AGCACGCAAACGGAACCC 61.284 61.111 0.00 0.00 46.04 4.11
2903 2968 4.337060 GCACGCAAACGGAACCCC 62.337 66.667 0.00 0.00 46.04 4.95
2904 2969 3.666253 CACGCAAACGGAACCCCC 61.666 66.667 0.00 0.00 46.04 5.40
2913 2978 2.686106 GGAACCCCCGAGCCACTA 60.686 66.667 0.00 0.00 0.00 2.74
2914 2979 2.070650 GGAACCCCCGAGCCACTAT 61.071 63.158 0.00 0.00 0.00 2.12
2915 2980 0.761702 GGAACCCCCGAGCCACTATA 60.762 60.000 0.00 0.00 0.00 1.31
2916 2981 1.125633 GAACCCCCGAGCCACTATAA 58.874 55.000 0.00 0.00 0.00 0.98
2917 2982 1.697982 GAACCCCCGAGCCACTATAAT 59.302 52.381 0.00 0.00 0.00 1.28
2918 2983 1.815757 ACCCCCGAGCCACTATAATT 58.184 50.000 0.00 0.00 0.00 1.40
2919 2984 1.420138 ACCCCCGAGCCACTATAATTG 59.580 52.381 0.00 0.00 0.00 2.32
2920 2985 1.523758 CCCCGAGCCACTATAATTGC 58.476 55.000 0.00 0.00 0.00 3.56
2921 2986 1.148310 CCCGAGCCACTATAATTGCG 58.852 55.000 0.00 0.00 0.00 4.85
2922 2987 1.148310 CCGAGCCACTATAATTGCGG 58.852 55.000 0.00 0.00 0.00 5.69
2923 2988 1.540363 CCGAGCCACTATAATTGCGGT 60.540 52.381 0.00 0.00 33.35 5.68
2924 2989 2.210116 CGAGCCACTATAATTGCGGTT 58.790 47.619 0.00 0.00 0.00 4.44
2925 2990 2.612212 CGAGCCACTATAATTGCGGTTT 59.388 45.455 0.00 0.00 0.00 3.27
2926 2991 3.064820 CGAGCCACTATAATTGCGGTTTT 59.935 43.478 0.00 0.00 0.00 2.43
2927 2992 4.351192 GAGCCACTATAATTGCGGTTTTG 58.649 43.478 0.00 0.00 0.00 2.44
2928 2993 2.857748 GCCACTATAATTGCGGTTTTGC 59.142 45.455 0.00 0.00 0.00 3.68
2929 2994 3.105203 CCACTATAATTGCGGTTTTGCG 58.895 45.455 0.00 0.00 37.81 4.85
2930 2995 3.105203 CACTATAATTGCGGTTTTGCGG 58.895 45.455 0.00 0.00 37.81 5.69
2931 2996 2.098443 ACTATAATTGCGGTTTTGCGGG 59.902 45.455 0.00 0.00 37.81 6.13
2932 2997 0.892063 ATAATTGCGGTTTTGCGGGT 59.108 45.000 0.00 0.00 37.81 5.28
2933 2998 1.531423 TAATTGCGGTTTTGCGGGTA 58.469 45.000 0.00 0.00 37.81 3.69
2934 2999 0.242555 AATTGCGGTTTTGCGGGTAG 59.757 50.000 0.00 0.00 37.81 3.18
2935 3000 1.591504 ATTGCGGTTTTGCGGGTAGG 61.592 55.000 0.00 0.00 37.81 3.18
2936 3001 2.670592 GCGGTTTTGCGGGTAGGT 60.671 61.111 0.00 0.00 0.00 3.08
2937 3002 2.973316 GCGGTTTTGCGGGTAGGTG 61.973 63.158 0.00 0.00 0.00 4.00
2938 3003 1.598685 CGGTTTTGCGGGTAGGTGT 60.599 57.895 0.00 0.00 0.00 4.16
2939 3004 1.847890 CGGTTTTGCGGGTAGGTGTG 61.848 60.000 0.00 0.00 0.00 3.82
2940 3005 1.520600 GGTTTTGCGGGTAGGTGTGG 61.521 60.000 0.00 0.00 0.00 4.17
2941 3006 1.228306 TTTTGCGGGTAGGTGTGGG 60.228 57.895 0.00 0.00 0.00 4.61
2942 3007 1.997256 TTTTGCGGGTAGGTGTGGGT 61.997 55.000 0.00 0.00 0.00 4.51
2943 3008 2.400269 TTTGCGGGTAGGTGTGGGTC 62.400 60.000 0.00 0.00 0.00 4.46
2944 3009 4.446413 GCGGGTAGGTGTGGGTCG 62.446 72.222 0.00 0.00 0.00 4.79
2945 3010 2.677524 CGGGTAGGTGTGGGTCGA 60.678 66.667 0.00 0.00 0.00 4.20
2946 3011 2.277591 CGGGTAGGTGTGGGTCGAA 61.278 63.158 0.00 0.00 0.00 3.71
2947 3012 1.818959 CGGGTAGGTGTGGGTCGAAA 61.819 60.000 0.00 0.00 0.00 3.46
2948 3013 0.321034 GGGTAGGTGTGGGTCGAAAC 60.321 60.000 0.00 0.00 0.00 2.78
2949 3014 0.321034 GGTAGGTGTGGGTCGAAACC 60.321 60.000 0.55 0.55 45.65 3.27
2959 3024 0.757512 GGTCGAAACCCTATCCTCCC 59.242 60.000 0.00 0.00 39.93 4.30
2960 3025 0.388294 GTCGAAACCCTATCCTCCCG 59.612 60.000 0.00 0.00 0.00 5.14
2961 3026 1.069258 CGAAACCCTATCCTCCCGC 59.931 63.158 0.00 0.00 0.00 6.13
2962 3027 1.682451 CGAAACCCTATCCTCCCGCA 61.682 60.000 0.00 0.00 0.00 5.69
2963 3028 0.106894 GAAACCCTATCCTCCCGCAG 59.893 60.000 0.00 0.00 0.00 5.18
2964 3029 1.984288 AAACCCTATCCTCCCGCAGC 61.984 60.000 0.00 0.00 0.00 5.25
2965 3030 3.631046 CCCTATCCTCCCGCAGCC 61.631 72.222 0.00 0.00 0.00 4.85
2966 3031 3.996124 CCTATCCTCCCGCAGCCG 61.996 72.222 0.00 0.00 0.00 5.52
2967 3032 4.671569 CTATCCTCCCGCAGCCGC 62.672 72.222 0.00 0.00 0.00 6.53
2978 3043 4.697756 CAGCCGCGTTCCCTTCCA 62.698 66.667 4.92 0.00 0.00 3.53
2979 3044 3.948719 AGCCGCGTTCCCTTCCAA 61.949 61.111 4.92 0.00 0.00 3.53
2980 3045 2.750237 GCCGCGTTCCCTTCCAAT 60.750 61.111 4.92 0.00 0.00 3.16
2981 3046 2.340328 GCCGCGTTCCCTTCCAATT 61.340 57.895 4.92 0.00 0.00 2.32
2982 3047 1.800681 CCGCGTTCCCTTCCAATTC 59.199 57.895 4.92 0.00 0.00 2.17
2983 3048 1.654023 CCGCGTTCCCTTCCAATTCC 61.654 60.000 4.92 0.00 0.00 3.01
2984 3049 1.654023 CGCGTTCCCTTCCAATTCCC 61.654 60.000 0.00 0.00 0.00 3.97
2985 3050 1.320344 GCGTTCCCTTCCAATTCCCC 61.320 60.000 0.00 0.00 0.00 4.81
2986 3051 0.039035 CGTTCCCTTCCAATTCCCCA 59.961 55.000 0.00 0.00 0.00 4.96
2987 3052 1.557099 GTTCCCTTCCAATTCCCCAC 58.443 55.000 0.00 0.00 0.00 4.61
2988 3053 1.077169 GTTCCCTTCCAATTCCCCACT 59.923 52.381 0.00 0.00 0.00 4.00
2989 3054 0.704076 TCCCTTCCAATTCCCCACTG 59.296 55.000 0.00 0.00 0.00 3.66
2990 3055 0.972471 CCCTTCCAATTCCCCACTGC 60.972 60.000 0.00 0.00 0.00 4.40
2991 3056 1.315257 CCTTCCAATTCCCCACTGCG 61.315 60.000 0.00 0.00 0.00 5.18
2992 3057 1.937546 CTTCCAATTCCCCACTGCGC 61.938 60.000 0.00 0.00 0.00 6.09
2993 3058 3.451894 CCAATTCCCCACTGCGCC 61.452 66.667 4.18 0.00 0.00 6.53
2994 3059 3.814268 CAATTCCCCACTGCGCCG 61.814 66.667 4.18 0.00 0.00 6.46
3002 3067 3.490759 CACTGCGCCGCTCGATTT 61.491 61.111 11.67 0.00 41.67 2.17
3003 3068 3.188786 ACTGCGCCGCTCGATTTC 61.189 61.111 11.67 0.00 41.67 2.17
3004 3069 2.887568 CTGCGCCGCTCGATTTCT 60.888 61.111 11.67 0.00 41.67 2.52
3005 3070 2.864931 CTGCGCCGCTCGATTTCTC 61.865 63.158 11.67 0.00 41.67 2.87
3006 3071 3.977568 GCGCCGCTCGATTTCTCG 61.978 66.667 0.00 0.00 46.41 4.04
3007 3072 3.977568 CGCCGCTCGATTTCTCGC 61.978 66.667 0.00 0.00 44.65 5.03
3008 3073 3.631127 GCCGCTCGATTTCTCGCC 61.631 66.667 0.00 0.00 44.65 5.54
3009 3074 2.962253 CCGCTCGATTTCTCGCCC 60.962 66.667 0.00 0.00 44.65 6.13
3010 3075 2.962253 CGCTCGATTTCTCGCCCC 60.962 66.667 0.00 0.00 44.65 5.80
3011 3076 2.589159 GCTCGATTTCTCGCCCCC 60.589 66.667 0.00 0.00 44.65 5.40
3012 3077 2.279517 CTCGATTTCTCGCCCCCG 60.280 66.667 0.00 0.00 44.65 5.73
3013 3078 3.792053 CTCGATTTCTCGCCCCCGG 62.792 68.421 0.00 0.00 44.65 5.73
3027 3092 4.697756 CCGGCGAGCCTTGAACCA 62.698 66.667 9.30 0.00 0.00 3.67
3028 3093 2.436646 CGGCGAGCCTTGAACCAT 60.437 61.111 12.70 0.00 0.00 3.55
3029 3094 2.464459 CGGCGAGCCTTGAACCATC 61.464 63.158 12.70 0.00 0.00 3.51
3030 3095 1.377202 GGCGAGCCTTGAACCATCA 60.377 57.895 6.90 0.00 0.00 3.07
3031 3096 0.749454 GGCGAGCCTTGAACCATCAT 60.749 55.000 6.90 0.00 34.96 2.45
3032 3097 0.379669 GCGAGCCTTGAACCATCATG 59.620 55.000 0.00 0.00 34.96 3.07
3036 3101 2.109431 CCTTGAACCATCATGGCCG 58.891 57.895 2.52 0.00 42.67 6.13
3037 3102 0.394216 CCTTGAACCATCATGGCCGA 60.394 55.000 2.52 0.00 42.67 5.54
3038 3103 0.734889 CTTGAACCATCATGGCCGAC 59.265 55.000 2.52 0.00 42.67 4.79
3039 3104 0.327924 TTGAACCATCATGGCCGACT 59.672 50.000 2.52 0.00 42.67 4.18
3040 3105 0.107703 TGAACCATCATGGCCGACTC 60.108 55.000 2.52 0.00 42.67 3.36
3041 3106 1.153369 AACCATCATGGCCGACTCG 60.153 57.895 2.52 0.00 42.67 4.18
3051 3116 3.917760 CCGACTCGGGGATGAGGC 61.918 72.222 9.85 0.00 44.15 4.70
3053 3118 3.917760 GACTCGGGGATGAGGCGG 61.918 72.222 0.00 0.00 40.39 6.13
3054 3119 4.458829 ACTCGGGGATGAGGCGGA 62.459 66.667 0.00 0.00 40.39 5.54
3055 3120 3.610669 CTCGGGGATGAGGCGGAG 61.611 72.222 0.00 0.00 32.18 4.63
3081 3146 4.498520 CCGCGCCAGATCTGACGT 62.499 66.667 28.39 0.00 38.70 4.34
3082 3147 2.951745 CGCGCCAGATCTGACGTC 60.952 66.667 28.39 20.18 38.70 4.34
3083 3148 2.951745 GCGCCAGATCTGACGTCG 60.952 66.667 28.39 21.77 38.70 5.12
3084 3149 2.951745 CGCCAGATCTGACGTCGC 60.952 66.667 24.62 16.42 31.81 5.19
3085 3150 2.951745 GCCAGATCTGACGTCGCG 60.952 66.667 24.62 0.00 0.00 5.87
3086 3151 2.951745 CCAGATCTGACGTCGCGC 60.952 66.667 24.62 0.00 0.00 6.86
3124 3189 4.947147 TGGCTCAACCACGGTGCC 62.947 66.667 8.72 8.72 46.36 5.01
3154 3219 4.520846 GCATTCAACCGGCGCGAG 62.521 66.667 12.10 1.76 0.00 5.03
3166 3231 2.502080 CGCGAGCTCGACGAGTTT 60.502 61.111 38.74 14.27 43.02 2.66
3167 3232 2.768920 CGCGAGCTCGACGAGTTTG 61.769 63.158 38.74 22.80 43.02 2.93
3168 3233 1.442184 GCGAGCTCGACGAGTTTGA 60.442 57.895 38.74 0.00 43.02 2.69
3169 3234 1.399504 GCGAGCTCGACGAGTTTGAG 61.400 60.000 38.74 17.05 43.02 3.02
3209 3274 3.760035 GCGCCTCCTCCGAGTGAA 61.760 66.667 0.00 0.00 33.93 3.18
3210 3275 2.182030 CGCCTCCTCCGAGTGAAC 59.818 66.667 0.00 0.00 33.93 3.18
3211 3276 2.344203 CGCCTCCTCCGAGTGAACT 61.344 63.158 0.00 0.00 33.93 3.01
3212 3277 1.878656 CGCCTCCTCCGAGTGAACTT 61.879 60.000 0.00 0.00 33.93 2.66
3213 3278 1.183549 GCCTCCTCCGAGTGAACTTA 58.816 55.000 0.00 0.00 33.93 2.24
3214 3279 1.757699 GCCTCCTCCGAGTGAACTTAT 59.242 52.381 0.00 0.00 33.93 1.73
3215 3280 2.168728 GCCTCCTCCGAGTGAACTTATT 59.831 50.000 0.00 0.00 33.93 1.40
3216 3281 3.383825 GCCTCCTCCGAGTGAACTTATTA 59.616 47.826 0.00 0.00 33.93 0.98
3217 3282 4.039366 GCCTCCTCCGAGTGAACTTATTAT 59.961 45.833 0.00 0.00 33.93 1.28
3218 3283 5.533482 CCTCCTCCGAGTGAACTTATTATG 58.467 45.833 0.00 0.00 33.93 1.90
3219 3284 4.945246 TCCTCCGAGTGAACTTATTATGC 58.055 43.478 0.00 0.00 0.00 3.14
3220 3285 3.736252 CCTCCGAGTGAACTTATTATGCG 59.264 47.826 0.00 0.00 0.00 4.73
3221 3286 4.499188 CCTCCGAGTGAACTTATTATGCGA 60.499 45.833 0.00 0.00 0.00 5.10
3222 3287 5.001237 TCCGAGTGAACTTATTATGCGAA 57.999 39.130 0.00 0.00 0.00 4.70
3223 3288 5.041287 TCCGAGTGAACTTATTATGCGAAG 58.959 41.667 0.00 0.00 0.00 3.79
3224 3289 5.041287 CCGAGTGAACTTATTATGCGAAGA 58.959 41.667 0.00 0.00 0.00 2.87
3225 3290 5.518847 CCGAGTGAACTTATTATGCGAAGAA 59.481 40.000 0.00 0.00 0.00 2.52
3226 3291 6.291849 CCGAGTGAACTTATTATGCGAAGAAG 60.292 42.308 4.50 4.50 0.00 2.85
3227 3292 6.472486 CGAGTGAACTTATTATGCGAAGAAGA 59.528 38.462 11.29 0.00 0.00 2.87
3228 3293 7.009265 CGAGTGAACTTATTATGCGAAGAAGAA 59.991 37.037 11.29 0.00 0.00 2.52
3229 3294 7.965045 AGTGAACTTATTATGCGAAGAAGAAC 58.035 34.615 11.29 7.28 0.00 3.01
3230 3295 7.064728 AGTGAACTTATTATGCGAAGAAGAACC 59.935 37.037 11.29 2.81 0.00 3.62
3231 3296 6.876789 TGAACTTATTATGCGAAGAAGAACCA 59.123 34.615 11.29 4.73 0.00 3.67
3232 3297 7.552687 TGAACTTATTATGCGAAGAAGAACCAT 59.447 33.333 11.29 0.00 0.00 3.55
3233 3298 7.484035 ACTTATTATGCGAAGAAGAACCATC 57.516 36.000 11.29 0.00 0.00 3.51
3234 3299 7.275920 ACTTATTATGCGAAGAAGAACCATCT 58.724 34.615 11.29 0.00 37.57 2.90
3235 3300 8.421784 ACTTATTATGCGAAGAAGAACCATCTA 58.578 33.333 11.29 0.00 33.77 1.98
3236 3301 9.429359 CTTATTATGCGAAGAAGAACCATCTAT 57.571 33.333 0.46 0.00 33.77 1.98
3237 3302 7.664082 ATTATGCGAAGAAGAACCATCTATG 57.336 36.000 0.00 0.00 33.77 2.23
3238 3303 3.198068 TGCGAAGAAGAACCATCTATGC 58.802 45.455 0.00 0.00 33.77 3.14
3239 3304 2.219674 GCGAAGAAGAACCATCTATGCG 59.780 50.000 0.00 0.00 33.77 4.73
3240 3305 3.706698 CGAAGAAGAACCATCTATGCGA 58.293 45.455 0.00 0.00 33.77 5.10
3241 3306 3.733224 CGAAGAAGAACCATCTATGCGAG 59.267 47.826 0.00 0.00 33.77 5.03
3242 3307 3.104843 AGAAGAACCATCTATGCGAGC 57.895 47.619 0.00 0.00 33.77 5.03
3243 3308 1.789464 GAAGAACCATCTATGCGAGCG 59.211 52.381 0.00 0.00 33.77 5.03
3244 3309 1.032794 AGAACCATCTATGCGAGCGA 58.967 50.000 0.00 0.00 32.88 4.93
3245 3310 1.000827 AGAACCATCTATGCGAGCGAG 60.001 52.381 0.00 0.00 32.88 5.03
3246 3311 0.598680 AACCATCTATGCGAGCGAGC 60.599 55.000 0.00 0.00 37.71 5.03
3247 3312 1.288439 CCATCTATGCGAGCGAGCT 59.712 57.895 0.00 0.00 38.13 4.09
3248 3313 0.732196 CCATCTATGCGAGCGAGCTC 60.732 60.000 14.61 14.61 39.55 4.09
3249 3314 0.732196 CATCTATGCGAGCGAGCTCC 60.732 60.000 18.19 11.85 39.77 4.70
3250 3315 2.193865 ATCTATGCGAGCGAGCTCCG 62.194 60.000 18.19 14.07 39.77 4.63
3251 3316 3.888079 CTATGCGAGCGAGCTCCGG 62.888 68.421 18.19 0.00 39.77 5.14
3275 3340 2.180397 GCTGCTGCTTAAATTTCTCGC 58.820 47.619 8.53 0.00 36.03 5.03
3276 3341 2.434761 CTGCTGCTTAAATTTCTCGCG 58.565 47.619 0.00 0.00 0.00 5.87
3277 3342 1.183511 GCTGCTTAAATTTCTCGCGC 58.816 50.000 0.00 0.00 0.00 6.86
3278 3343 1.446731 CTGCTTAAATTTCTCGCGCG 58.553 50.000 26.76 26.76 0.00 6.86
3279 3344 1.060553 CTGCTTAAATTTCTCGCGCGA 59.939 47.619 32.60 32.60 0.00 5.87
3280 3345 1.461512 TGCTTAAATTTCTCGCGCGAA 59.538 42.857 33.99 20.11 0.00 4.70
3281 3346 2.096169 TGCTTAAATTTCTCGCGCGAAA 60.096 40.909 33.99 25.68 37.31 3.46
3282 3347 2.272954 GCTTAAATTTCTCGCGCGAAAC 59.727 45.455 33.99 13.08 35.88 2.78
3283 3348 3.475242 CTTAAATTTCTCGCGCGAAACA 58.525 40.909 33.99 15.35 35.88 2.83
3284 3349 2.392933 AAATTTCTCGCGCGAAACAA 57.607 40.000 33.99 24.48 35.88 2.83
3285 3350 1.670326 AATTTCTCGCGCGAAACAAC 58.330 45.000 33.99 0.00 35.88 3.32
3286 3351 0.865769 ATTTCTCGCGCGAAACAACT 59.134 45.000 33.99 16.89 35.88 3.16
3287 3352 0.653636 TTTCTCGCGCGAAACAACTT 59.346 45.000 33.99 0.00 0.00 2.66
3288 3353 0.653636 TTCTCGCGCGAAACAACTTT 59.346 45.000 33.99 0.00 0.00 2.66
3289 3354 0.653636 TCTCGCGCGAAACAACTTTT 59.346 45.000 33.99 0.00 0.00 2.27
3290 3355 1.062880 TCTCGCGCGAAACAACTTTTT 59.937 42.857 33.99 0.00 0.00 1.94
3317 3382 5.702065 AAAAATAGGGGTTTGTTTGTGGT 57.298 34.783 0.00 0.00 0.00 4.16
3318 3383 5.702065 AAAATAGGGGTTTGTTTGTGGTT 57.298 34.783 0.00 0.00 0.00 3.67
3319 3384 5.702065 AAATAGGGGTTTGTTTGTGGTTT 57.298 34.783 0.00 0.00 0.00 3.27
3320 3385 4.948341 ATAGGGGTTTGTTTGTGGTTTC 57.052 40.909 0.00 0.00 0.00 2.78
3321 3386 2.827755 AGGGGTTTGTTTGTGGTTTCT 58.172 42.857 0.00 0.00 0.00 2.52
3322 3387 3.983821 AGGGGTTTGTTTGTGGTTTCTA 58.016 40.909 0.00 0.00 0.00 2.10
3323 3388 3.958147 AGGGGTTTGTTTGTGGTTTCTAG 59.042 43.478 0.00 0.00 0.00 2.43
3324 3389 3.702548 GGGGTTTGTTTGTGGTTTCTAGT 59.297 43.478 0.00 0.00 0.00 2.57
3325 3390 4.202080 GGGGTTTGTTTGTGGTTTCTAGTC 60.202 45.833 0.00 0.00 0.00 2.59
3326 3391 4.643334 GGGTTTGTTTGTGGTTTCTAGTCT 59.357 41.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 0.392461 ATGTCGTAGGGCGCAATGTT 60.392 50.000 10.83 0.00 41.07 2.71
185 186 2.962253 GGATAGCGTGCCAGCGAC 60.962 66.667 0.00 0.00 43.00 5.19
228 231 0.738975 CCTCGAGCTGACGAACCATA 59.261 55.000 6.99 0.00 41.67 2.74
266 269 1.847328 TACAATCTCGTCCTCTGCCA 58.153 50.000 0.00 0.00 0.00 4.92
289 292 3.326836 AGTTCAGCAAGAGGAAGTAGC 57.673 47.619 0.00 0.00 0.00 3.58
290 293 4.636249 ACAAGTTCAGCAAGAGGAAGTAG 58.364 43.478 0.00 0.00 0.00 2.57
347 350 1.221466 CGTGTGCGGGCTACATATGG 61.221 60.000 7.80 0.00 0.00 2.74
464 472 7.111247 TCAGATGTCCAACAAGTTTTTCATT 57.889 32.000 0.00 0.00 0.00 2.57
599 609 6.698329 GCATTTTAACTAACCGGACAAAACTT 59.302 34.615 9.46 0.00 0.00 2.66
641 657 1.562008 TGGGAGGACGCCATTCAATTA 59.438 47.619 0.00 0.00 0.00 1.40
642 658 0.331278 TGGGAGGACGCCATTCAATT 59.669 50.000 0.00 0.00 0.00 2.32
682 698 7.116805 CCACATTTCTTATTTGCAGAAAAGGAC 59.883 37.037 2.62 0.00 42.23 3.85
685 701 6.128472 GGCCACATTTCTTATTTGCAGAAAAG 60.128 38.462 0.00 1.58 42.23 2.27
705 721 1.003233 GTTCTGGTGAGGAGGCCAC 60.003 63.158 5.01 0.00 0.00 5.01
758 774 0.609151 TTAAGGGCGTGTCGGATTGA 59.391 50.000 0.00 0.00 0.00 2.57
844 862 1.147153 GCTGTCAGTATGGGGAGCC 59.853 63.158 0.93 0.00 36.16 4.70
1088 1121 1.382692 GGAGTCGGAGTAGAACCCCG 61.383 65.000 0.00 0.00 44.22 5.73
1260 1293 0.678684 TACCCTGACATCTCGACGCA 60.679 55.000 0.00 0.00 0.00 5.24
1262 1295 0.029567 GCTACCCTGACATCTCGACG 59.970 60.000 0.00 0.00 0.00 5.12
1266 1299 0.249238 CGCTGCTACCCTGACATCTC 60.249 60.000 0.00 0.00 0.00 2.75
1267 1300 0.684479 TCGCTGCTACCCTGACATCT 60.684 55.000 0.00 0.00 0.00 2.90
1550 1594 3.113260 AGACTACAGACAAACACAGCC 57.887 47.619 0.00 0.00 0.00 4.85
1593 1637 1.073216 CGATCGTCAGTGGCACTCAC 61.073 60.000 19.13 15.45 46.39 3.51
1594 1638 1.212751 CGATCGTCAGTGGCACTCA 59.787 57.895 19.13 0.26 0.00 3.41
1595 1639 0.524392 CTCGATCGTCAGTGGCACTC 60.524 60.000 19.13 6.73 0.00 3.51
1596 1640 0.960861 TCTCGATCGTCAGTGGCACT 60.961 55.000 15.88 15.88 0.00 4.40
1626 1670 3.788766 GGCGCGCGTCAGACAAAT 61.789 61.111 31.92 0.00 0.00 2.32
1806 1850 1.252904 TGGGGTACGTACCTGTCAGC 61.253 60.000 36.70 22.32 45.72 4.26
1809 1853 1.260544 AAGTGGGGTACGTACCTGTC 58.739 55.000 36.70 26.95 45.72 3.51
1825 1869 4.509600 GTCGCGGAGTACTAGTATGTAAGT 59.490 45.833 6.13 0.00 0.00 2.24
1831 1875 2.225963 GCATGTCGCGGAGTACTAGTAT 59.774 50.000 6.13 0.00 0.00 2.12
2236 2281 1.572941 CATCTTGATCATGGCGCCG 59.427 57.895 23.90 8.74 0.00 6.46
2433 2487 8.029522 GCTCGATTATCAATATTGGAGTACTGA 58.970 37.037 15.36 5.53 0.00 3.41
2435 2489 7.896811 TGCTCGATTATCAATATTGGAGTACT 58.103 34.615 15.36 0.00 0.00 2.73
2436 2490 8.709386 ATGCTCGATTATCAATATTGGAGTAC 57.291 34.615 15.36 4.63 0.00 2.73
2442 2496 8.385858 CACCACTATGCTCGATTATCAATATTG 58.614 37.037 9.29 9.29 0.00 1.90
2459 2513 5.132502 TGCAATCTTAATCCCACCACTATG 58.867 41.667 0.00 0.00 0.00 2.23
2462 2516 3.737559 TGCAATCTTAATCCCACCACT 57.262 42.857 0.00 0.00 0.00 4.00
2498 2552 1.202440 ACGCTGTTAACAACTCGTCCA 60.202 47.619 18.47 0.00 36.93 4.02
2515 2569 2.225491 TGCCACTAGAAATGAAACACGC 59.775 45.455 0.00 0.00 0.00 5.34
2523 2584 4.082625 TGCATGTTCTTGCCACTAGAAATG 60.083 41.667 0.00 0.00 42.06 2.32
2550 2611 7.629130 TCTTTTCTTTTGCATTGCACATTAAC 58.371 30.769 11.66 0.00 38.71 2.01
2568 2629 4.881850 TCTTTCCTGCGAGTTTTCTTTTCT 59.118 37.500 0.00 0.00 0.00 2.52
2573 2634 3.999663 CTCATCTTTCCTGCGAGTTTTCT 59.000 43.478 0.00 0.00 0.00 2.52
2574 2635 3.997021 TCTCATCTTTCCTGCGAGTTTTC 59.003 43.478 0.00 0.00 0.00 2.29
2579 2640 2.871022 CCATTCTCATCTTTCCTGCGAG 59.129 50.000 0.00 0.00 0.00 5.03
2586 2647 5.012328 ACGTACTCCCATTCTCATCTTTC 57.988 43.478 0.00 0.00 0.00 2.62
2618 2679 2.094078 ACCAACACGCCGCTACTTATTA 60.094 45.455 0.00 0.00 0.00 0.98
2619 2680 1.338389 ACCAACACGCCGCTACTTATT 60.338 47.619 0.00 0.00 0.00 1.40
2620 2681 0.248289 ACCAACACGCCGCTACTTAT 59.752 50.000 0.00 0.00 0.00 1.73
2682 2743 2.260869 ATGCATGGGCGCCGTATTC 61.261 57.895 22.54 12.49 45.35 1.75
2722 2787 2.088423 ACACAGTTCTGTCCGCAAAAA 58.912 42.857 2.22 0.00 0.00 1.94
2723 2788 1.745232 ACACAGTTCTGTCCGCAAAA 58.255 45.000 2.22 0.00 0.00 2.44
2724 2789 2.159014 AGTACACAGTTCTGTCCGCAAA 60.159 45.455 2.22 0.00 0.00 3.68
2725 2790 1.411246 AGTACACAGTTCTGTCCGCAA 59.589 47.619 2.22 0.00 0.00 4.85
2726 2791 1.000607 GAGTACACAGTTCTGTCCGCA 60.001 52.381 2.22 0.00 0.00 5.69
2727 2792 1.669211 GGAGTACACAGTTCTGTCCGC 60.669 57.143 2.22 0.00 0.00 5.54
2728 2793 1.611977 TGGAGTACACAGTTCTGTCCG 59.388 52.381 2.22 0.00 0.00 4.79
2729 2794 3.069729 AGTTGGAGTACACAGTTCTGTCC 59.930 47.826 2.22 2.15 0.00 4.02
2730 2795 4.051922 CAGTTGGAGTACACAGTTCTGTC 58.948 47.826 2.22 0.00 0.00 3.51
2731 2796 3.741388 GCAGTTGGAGTACACAGTTCTGT 60.741 47.826 0.00 0.00 0.00 3.41
2732 2797 2.802816 GCAGTTGGAGTACACAGTTCTG 59.197 50.000 0.00 0.00 0.00 3.02
2733 2798 2.545952 CGCAGTTGGAGTACACAGTTCT 60.546 50.000 0.00 0.00 0.00 3.01
2734 2799 1.792949 CGCAGTTGGAGTACACAGTTC 59.207 52.381 0.00 0.00 0.00 3.01
2735 2800 1.138266 ACGCAGTTGGAGTACACAGTT 59.862 47.619 0.00 0.00 37.78 3.16
2736 2801 0.750850 ACGCAGTTGGAGTACACAGT 59.249 50.000 0.00 0.00 37.78 3.55
2737 2802 1.139989 CACGCAGTTGGAGTACACAG 58.860 55.000 0.00 0.00 41.61 3.66
2738 2803 0.462375 ACACGCAGTTGGAGTACACA 59.538 50.000 0.00 0.00 41.61 3.72
2739 2804 1.137513 GACACGCAGTTGGAGTACAC 58.862 55.000 0.00 0.00 41.61 2.90
2740 2805 0.747852 TGACACGCAGTTGGAGTACA 59.252 50.000 0.00 0.00 41.61 2.90
2741 2806 1.792949 CTTGACACGCAGTTGGAGTAC 59.207 52.381 0.00 0.00 41.61 2.73
2742 2807 1.872237 GCTTGACACGCAGTTGGAGTA 60.872 52.381 0.00 0.00 41.61 2.59
2743 2808 1.160329 GCTTGACACGCAGTTGGAGT 61.160 55.000 0.00 0.00 41.61 3.85
2744 2809 1.159713 TGCTTGACACGCAGTTGGAG 61.160 55.000 1.90 0.00 41.61 3.86
2745 2810 0.746204 TTGCTTGACACGCAGTTGGA 60.746 50.000 6.72 0.00 41.61 3.53
2746 2811 0.592247 GTTGCTTGACACGCAGTTGG 60.592 55.000 6.72 0.00 41.61 3.77
2747 2812 0.378257 AGTTGCTTGACACGCAGTTG 59.622 50.000 6.72 0.00 41.61 3.16
2748 2813 0.657840 GAGTTGCTTGACACGCAGTT 59.342 50.000 6.72 0.00 41.61 3.16
2750 2815 1.723542 CTAGAGTTGCTTGACACGCAG 59.276 52.381 6.72 0.00 38.80 5.18
2751 2816 1.783284 CTAGAGTTGCTTGACACGCA 58.217 50.000 1.90 1.90 35.22 5.24
2752 2817 0.440371 GCTAGAGTTGCTTGACACGC 59.560 55.000 0.00 0.00 0.00 5.34
2753 2818 1.723542 CTGCTAGAGTTGCTTGACACG 59.276 52.381 0.00 0.00 0.00 4.49
2754 2819 2.734079 GTCTGCTAGAGTTGCTTGACAC 59.266 50.000 0.00 0.00 35.99 3.67
2755 2820 2.289072 GGTCTGCTAGAGTTGCTTGACA 60.289 50.000 0.00 0.00 36.84 3.58
2756 2821 2.342179 GGTCTGCTAGAGTTGCTTGAC 58.658 52.381 0.00 0.00 35.59 3.18
2757 2822 1.276421 GGGTCTGCTAGAGTTGCTTGA 59.724 52.381 0.00 0.00 0.00 3.02
2758 2823 1.677217 GGGGTCTGCTAGAGTTGCTTG 60.677 57.143 0.00 0.00 0.00 4.01
2759 2824 0.615850 GGGGTCTGCTAGAGTTGCTT 59.384 55.000 0.00 0.00 0.00 3.91
2760 2825 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
2761 2826 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
2762 2827 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
2763 2828 0.978146 ATGCGGGGTCTGCTAGAGTT 60.978 55.000 0.00 0.00 0.00 3.01
2764 2829 1.381872 ATGCGGGGTCTGCTAGAGT 60.382 57.895 0.00 0.00 0.00 3.24
2765 2830 1.365633 GATGCGGGGTCTGCTAGAG 59.634 63.158 0.00 0.00 0.00 2.43
2766 2831 2.134287 GGATGCGGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
2767 2832 2.423446 GGATGCGGGGTCTGCTAG 59.577 66.667 0.30 0.00 0.00 3.42
2768 2833 3.536917 CGGATGCGGGGTCTGCTA 61.537 66.667 0.00 0.00 0.00 3.49
2784 2849 2.606155 AATTATGCGGGTTTGCGCCG 62.606 55.000 4.18 0.75 37.81 6.46
2785 2850 0.869880 GAATTATGCGGGTTTGCGCC 60.870 55.000 4.18 0.00 37.81 6.53
2786 2851 0.869880 GGAATTATGCGGGTTTGCGC 60.870 55.000 0.00 0.00 37.81 6.09
2787 2852 0.591236 CGGAATTATGCGGGTTTGCG 60.591 55.000 0.00 0.00 36.66 4.85
2788 2853 0.736053 TCGGAATTATGCGGGTTTGC 59.264 50.000 0.00 0.00 41.20 3.68
2789 2854 2.616376 TCATCGGAATTATGCGGGTTTG 59.384 45.455 0.00 0.00 41.20 2.93
2790 2855 2.925724 TCATCGGAATTATGCGGGTTT 58.074 42.857 0.00 0.00 41.20 3.27
2791 2856 2.631160 TCATCGGAATTATGCGGGTT 57.369 45.000 0.00 0.00 41.20 4.11
2792 2857 2.859165 ATCATCGGAATTATGCGGGT 57.141 45.000 0.00 0.00 41.20 5.28
2793 2858 5.051039 CGTATAATCATCGGAATTATGCGGG 60.051 44.000 17.67 1.03 40.26 6.13
2794 2859 5.746721 TCGTATAATCATCGGAATTATGCGG 59.253 40.000 21.68 11.11 42.41 5.69
2795 2860 6.560433 GCTCGTATAATCATCGGAATTATGCG 60.560 42.308 18.63 18.63 43.01 4.73
2796 2861 6.477033 AGCTCGTATAATCATCGGAATTATGC 59.523 38.462 5.56 3.88 0.00 3.14
2797 2862 7.993821 AGCTCGTATAATCATCGGAATTATG 57.006 36.000 5.56 0.00 0.00 1.90
2798 2863 7.492669 CCAAGCTCGTATAATCATCGGAATTAT 59.507 37.037 0.00 1.72 0.00 1.28
2799 2864 6.811665 CCAAGCTCGTATAATCATCGGAATTA 59.188 38.462 0.00 0.00 0.00 1.40
2800 2865 5.639506 CCAAGCTCGTATAATCATCGGAATT 59.360 40.000 0.00 0.00 0.00 2.17
2801 2866 5.171476 CCAAGCTCGTATAATCATCGGAAT 58.829 41.667 0.00 0.00 0.00 3.01
2802 2867 4.556233 CCAAGCTCGTATAATCATCGGAA 58.444 43.478 0.00 0.00 0.00 4.30
2803 2868 3.614150 GCCAAGCTCGTATAATCATCGGA 60.614 47.826 0.00 0.00 0.00 4.55
2804 2869 2.668457 GCCAAGCTCGTATAATCATCGG 59.332 50.000 0.00 0.00 0.00 4.18
2805 2870 2.668457 GGCCAAGCTCGTATAATCATCG 59.332 50.000 0.00 0.00 0.00 3.84
2806 2871 3.003480 GGGCCAAGCTCGTATAATCATC 58.997 50.000 4.39 0.00 0.00 2.92
2807 2872 2.371841 TGGGCCAAGCTCGTATAATCAT 59.628 45.455 2.13 0.00 0.00 2.45
2808 2873 1.765904 TGGGCCAAGCTCGTATAATCA 59.234 47.619 2.13 0.00 0.00 2.57
2809 2874 2.543777 TGGGCCAAGCTCGTATAATC 57.456 50.000 2.13 0.00 0.00 1.75
2810 2875 3.508845 AATGGGCCAAGCTCGTATAAT 57.491 42.857 11.89 0.00 0.00 1.28
2811 2876 3.290948 AAATGGGCCAAGCTCGTATAA 57.709 42.857 11.89 0.00 0.00 0.98
2812 2877 3.290948 AAAATGGGCCAAGCTCGTATA 57.709 42.857 11.89 0.00 0.00 1.47
2813 2878 2.143876 AAAATGGGCCAAGCTCGTAT 57.856 45.000 11.89 0.00 0.00 3.06
2814 2879 1.816224 GAAAAATGGGCCAAGCTCGTA 59.184 47.619 11.89 0.00 0.00 3.43
2815 2880 0.603065 GAAAAATGGGCCAAGCTCGT 59.397 50.000 11.89 0.00 0.00 4.18
2816 2881 0.890683 AGAAAAATGGGCCAAGCTCG 59.109 50.000 11.89 0.00 0.00 5.03
2817 2882 1.066645 CCAGAAAAATGGGCCAAGCTC 60.067 52.381 11.89 5.17 36.64 4.09
2818 2883 0.978907 CCAGAAAAATGGGCCAAGCT 59.021 50.000 11.89 0.18 36.64 3.74
2819 2884 0.674581 GCCAGAAAAATGGGCCAAGC 60.675 55.000 11.89 0.00 41.90 4.01
2820 2885 3.538379 GCCAGAAAAATGGGCCAAG 57.462 52.632 11.89 0.00 41.90 3.61
2825 2890 0.897621 GGTCTGGCCAGAAAAATGGG 59.102 55.000 36.66 6.78 40.97 4.00
2826 2891 1.631405 TGGTCTGGCCAGAAAAATGG 58.369 50.000 36.66 7.62 43.61 3.16
2838 2903 3.746949 GATGCGGGCTCTGGTCTGG 62.747 68.421 0.00 0.00 0.00 3.86
2839 2904 2.202987 GATGCGGGCTCTGGTCTG 60.203 66.667 0.00 0.00 0.00 3.51
2840 2905 3.842923 CGATGCGGGCTCTGGTCT 61.843 66.667 0.00 0.00 0.00 3.85
2841 2906 4.899239 CCGATGCGGGCTCTGGTC 62.899 72.222 0.00 0.00 44.15 4.02
2857 2922 0.961857 AAATTTACGGGCCGGACACC 60.962 55.000 31.78 4.67 0.00 4.16
2858 2923 0.883153 AAAATTTACGGGCCGGACAC 59.117 50.000 31.78 0.00 0.00 3.67
2859 2924 1.618487 AAAAATTTACGGGCCGGACA 58.382 45.000 31.78 16.89 0.00 4.02
2883 2948 2.725815 GTTCCGTTTGCGTGCTGC 60.726 61.111 0.00 0.00 46.70 5.25
2884 2949 2.051345 GGTTCCGTTTGCGTGCTG 60.051 61.111 0.00 0.00 36.15 4.41
2885 2950 3.284449 GGGTTCCGTTTGCGTGCT 61.284 61.111 0.00 0.00 36.15 4.40
2886 2951 4.337060 GGGGTTCCGTTTGCGTGC 62.337 66.667 0.00 0.00 36.15 5.34
2887 2952 3.666253 GGGGGTTCCGTTTGCGTG 61.666 66.667 0.00 0.00 36.15 5.34
2896 2961 0.761702 TATAGTGGCTCGGGGGTTCC 60.762 60.000 0.00 0.00 0.00 3.62
2897 2962 1.125633 TTATAGTGGCTCGGGGGTTC 58.874 55.000 0.00 0.00 0.00 3.62
2898 2963 1.815757 ATTATAGTGGCTCGGGGGTT 58.184 50.000 0.00 0.00 0.00 4.11
2899 2964 1.420138 CAATTATAGTGGCTCGGGGGT 59.580 52.381 0.00 0.00 0.00 4.95
2900 2965 1.882352 GCAATTATAGTGGCTCGGGGG 60.882 57.143 0.00 0.00 0.00 5.40
2901 2966 1.523758 GCAATTATAGTGGCTCGGGG 58.476 55.000 0.00 0.00 0.00 5.73
2902 2967 1.148310 CGCAATTATAGTGGCTCGGG 58.852 55.000 0.00 0.00 0.00 5.14
2903 2968 1.148310 CCGCAATTATAGTGGCTCGG 58.852 55.000 0.00 0.00 0.00 4.63
2904 2969 1.865865 ACCGCAATTATAGTGGCTCG 58.134 50.000 0.00 0.00 40.28 5.03
2905 2970 4.351192 CAAAACCGCAATTATAGTGGCTC 58.649 43.478 0.00 0.00 40.28 4.70
2906 2971 3.428862 GCAAAACCGCAATTATAGTGGCT 60.429 43.478 0.00 0.00 40.28 4.75
2907 2972 2.857748 GCAAAACCGCAATTATAGTGGC 59.142 45.455 0.00 0.00 40.28 5.01
2908 2973 3.105203 CGCAAAACCGCAATTATAGTGG 58.895 45.455 0.00 0.00 42.31 4.00
2909 2974 3.105203 CCGCAAAACCGCAATTATAGTG 58.895 45.455 0.00 0.00 0.00 2.74
2910 2975 2.098443 CCCGCAAAACCGCAATTATAGT 59.902 45.455 0.00 0.00 0.00 2.12
2911 2976 2.098443 ACCCGCAAAACCGCAATTATAG 59.902 45.455 0.00 0.00 0.00 1.31
2912 2977 2.093106 ACCCGCAAAACCGCAATTATA 58.907 42.857 0.00 0.00 0.00 0.98
2913 2978 0.892063 ACCCGCAAAACCGCAATTAT 59.108 45.000 0.00 0.00 0.00 1.28
2914 2979 1.469308 CTACCCGCAAAACCGCAATTA 59.531 47.619 0.00 0.00 0.00 1.40
2915 2980 0.242555 CTACCCGCAAAACCGCAATT 59.757 50.000 0.00 0.00 0.00 2.32
2916 2981 1.591504 CCTACCCGCAAAACCGCAAT 61.592 55.000 0.00 0.00 0.00 3.56
2917 2982 2.262303 CCTACCCGCAAAACCGCAA 61.262 57.895 0.00 0.00 0.00 4.85
2918 2983 2.670251 CCTACCCGCAAAACCGCA 60.670 61.111 0.00 0.00 0.00 5.69
2919 2984 2.670592 ACCTACCCGCAAAACCGC 60.671 61.111 0.00 0.00 0.00 5.68
2920 2985 1.598685 ACACCTACCCGCAAAACCG 60.599 57.895 0.00 0.00 0.00 4.44
2921 2986 1.520600 CCACACCTACCCGCAAAACC 61.521 60.000 0.00 0.00 0.00 3.27
2922 2987 1.520600 CCCACACCTACCCGCAAAAC 61.521 60.000 0.00 0.00 0.00 2.43
2923 2988 1.228306 CCCACACCTACCCGCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
2924 2989 2.400269 GACCCACACCTACCCGCAAA 62.400 60.000 0.00 0.00 0.00 3.68
2925 2990 2.850130 ACCCACACCTACCCGCAA 60.850 61.111 0.00 0.00 0.00 4.85
2926 2991 3.315949 GACCCACACCTACCCGCA 61.316 66.667 0.00 0.00 0.00 5.69
2927 2992 4.446413 CGACCCACACCTACCCGC 62.446 72.222 0.00 0.00 0.00 6.13
2928 2993 1.818959 TTTCGACCCACACCTACCCG 61.819 60.000 0.00 0.00 0.00 5.28
2929 2994 0.321034 GTTTCGACCCACACCTACCC 60.321 60.000 0.00 0.00 0.00 3.69
2930 2995 0.321034 GGTTTCGACCCACACCTACC 60.321 60.000 0.00 0.00 0.00 3.18
2931 2996 3.222053 GGTTTCGACCCACACCTAC 57.778 57.895 0.00 0.00 0.00 3.18
2940 3005 0.757512 GGGAGGATAGGGTTTCGACC 59.242 60.000 0.00 0.00 0.00 4.79
2941 3006 0.388294 CGGGAGGATAGGGTTTCGAC 59.612 60.000 0.00 0.00 0.00 4.20
2942 3007 1.397390 GCGGGAGGATAGGGTTTCGA 61.397 60.000 0.00 0.00 0.00 3.71
2943 3008 1.069258 GCGGGAGGATAGGGTTTCG 59.931 63.158 0.00 0.00 0.00 3.46
2944 3009 0.106894 CTGCGGGAGGATAGGGTTTC 59.893 60.000 0.00 0.00 0.00 2.78
2945 3010 1.984288 GCTGCGGGAGGATAGGGTTT 61.984 60.000 0.00 0.00 0.00 3.27
2946 3011 2.444256 GCTGCGGGAGGATAGGGTT 61.444 63.158 0.00 0.00 0.00 4.11
2947 3012 2.844839 GCTGCGGGAGGATAGGGT 60.845 66.667 0.00 0.00 0.00 4.34
2948 3013 3.631046 GGCTGCGGGAGGATAGGG 61.631 72.222 0.00 0.00 0.00 3.53
2949 3014 3.996124 CGGCTGCGGGAGGATAGG 61.996 72.222 0.00 0.00 0.00 2.57
2950 3015 4.671569 GCGGCTGCGGGAGGATAG 62.672 72.222 0.00 0.00 0.00 2.08
2961 3026 4.697756 TGGAAGGGAACGCGGCTG 62.698 66.667 12.47 0.00 0.00 4.85
2962 3027 2.764637 AATTGGAAGGGAACGCGGCT 62.765 55.000 12.47 0.00 0.00 5.52
2963 3028 2.266376 GAATTGGAAGGGAACGCGGC 62.266 60.000 12.47 0.92 0.00 6.53
2964 3029 1.654023 GGAATTGGAAGGGAACGCGG 61.654 60.000 12.47 0.00 0.00 6.46
2965 3030 1.654023 GGGAATTGGAAGGGAACGCG 61.654 60.000 3.53 3.53 0.00 6.01
2966 3031 1.320344 GGGGAATTGGAAGGGAACGC 61.320 60.000 0.00 0.00 0.00 4.84
2967 3032 0.039035 TGGGGAATTGGAAGGGAACG 59.961 55.000 0.00 0.00 0.00 3.95
2968 3033 1.077169 AGTGGGGAATTGGAAGGGAAC 59.923 52.381 0.00 0.00 0.00 3.62
2969 3034 1.077005 CAGTGGGGAATTGGAAGGGAA 59.923 52.381 0.00 0.00 0.00 3.97
2970 3035 0.704076 CAGTGGGGAATTGGAAGGGA 59.296 55.000 0.00 0.00 0.00 4.20
2971 3036 0.972471 GCAGTGGGGAATTGGAAGGG 60.972 60.000 0.00 0.00 0.00 3.95
2972 3037 1.315257 CGCAGTGGGGAATTGGAAGG 61.315 60.000 0.00 0.00 0.00 3.46
2973 3038 1.937546 GCGCAGTGGGGAATTGGAAG 61.938 60.000 0.30 0.00 0.00 3.46
2974 3039 1.976474 GCGCAGTGGGGAATTGGAA 60.976 57.895 0.30 0.00 0.00 3.53
2975 3040 2.361104 GCGCAGTGGGGAATTGGA 60.361 61.111 0.30 0.00 0.00 3.53
2976 3041 3.451894 GGCGCAGTGGGGAATTGG 61.452 66.667 10.83 0.00 0.00 3.16
2977 3042 3.814268 CGGCGCAGTGGGGAATTG 61.814 66.667 10.83 0.00 0.00 2.32
2985 3050 3.425938 GAAATCGAGCGGCGCAGTG 62.426 63.158 35.02 22.14 40.61 3.66
2986 3051 3.188786 GAAATCGAGCGGCGCAGT 61.189 61.111 35.02 15.14 40.61 4.40
2987 3052 2.864931 GAGAAATCGAGCGGCGCAG 61.865 63.158 35.02 26.22 40.61 5.18
2988 3053 2.885644 GAGAAATCGAGCGGCGCA 60.886 61.111 35.02 14.60 40.61 6.09
2989 3054 3.977568 CGAGAAATCGAGCGGCGC 61.978 66.667 26.86 26.86 40.61 6.53
2990 3055 3.977568 GCGAGAAATCGAGCGGCG 61.978 66.667 0.51 0.51 42.69 6.46
2991 3056 3.631127 GGCGAGAAATCGAGCGGC 61.631 66.667 1.17 0.00 41.85 6.53
2992 3057 2.962253 GGGCGAGAAATCGAGCGG 60.962 66.667 1.17 0.00 34.64 5.52
2993 3058 2.962253 GGGGCGAGAAATCGAGCG 60.962 66.667 1.17 0.00 34.64 5.03
2994 3059 2.589159 GGGGGCGAGAAATCGAGC 60.589 66.667 1.17 0.00 34.64 5.03
2995 3060 2.279517 CGGGGGCGAGAAATCGAG 60.280 66.667 1.17 0.00 34.64 4.04
2996 3061 3.845259 CCGGGGGCGAGAAATCGA 61.845 66.667 1.17 0.00 34.64 3.59
3010 3075 3.976701 ATGGTTCAAGGCTCGCCGG 62.977 63.158 0.00 0.00 41.95 6.13
3011 3076 2.436646 ATGGTTCAAGGCTCGCCG 60.437 61.111 1.69 0.00 41.95 6.46
3012 3077 0.749454 ATGATGGTTCAAGGCTCGCC 60.749 55.000 0.00 0.00 34.96 5.54
3013 3078 0.379669 CATGATGGTTCAAGGCTCGC 59.620 55.000 0.00 0.00 34.96 5.03
3014 3079 1.019673 CCATGATGGTTCAAGGCTCG 58.980 55.000 2.54 0.00 34.22 5.03
3018 3083 0.394216 TCGGCCATGATGGTTCAAGG 60.394 55.000 13.84 0.00 42.45 3.61
3019 3084 0.734889 GTCGGCCATGATGGTTCAAG 59.265 55.000 13.84 0.81 40.46 3.02
3020 3085 0.327924 AGTCGGCCATGATGGTTCAA 59.672 50.000 13.84 0.00 40.46 2.69
3021 3086 0.107703 GAGTCGGCCATGATGGTTCA 60.108 55.000 13.84 0.00 40.46 3.18
3022 3087 1.154205 CGAGTCGGCCATGATGGTTC 61.154 60.000 13.84 5.18 40.46 3.62
3023 3088 1.153369 CGAGTCGGCCATGATGGTT 60.153 57.895 13.84 0.00 40.46 3.67
3024 3089 2.501128 CGAGTCGGCCATGATGGT 59.499 61.111 13.84 0.00 40.46 3.55
3025 3090 2.280389 CCGAGTCGGCCATGATGG 60.280 66.667 20.50 7.21 41.17 3.51
3026 3091 2.280389 CCCGAGTCGGCCATGATG 60.280 66.667 26.60 6.70 46.86 3.07
3027 3092 3.550431 CCCCGAGTCGGCCATGAT 61.550 66.667 26.60 0.00 46.86 2.45
3028 3093 4.770362 TCCCCGAGTCGGCCATGA 62.770 66.667 26.60 15.45 46.86 3.07
3029 3094 3.550431 ATCCCCGAGTCGGCCATG 61.550 66.667 26.60 12.21 46.86 3.66
3030 3095 3.550431 CATCCCCGAGTCGGCCAT 61.550 66.667 26.60 16.09 46.86 4.40
3031 3096 4.770362 TCATCCCCGAGTCGGCCA 62.770 66.667 26.60 14.41 46.86 5.36
3032 3097 3.917760 CTCATCCCCGAGTCGGCC 61.918 72.222 26.60 0.00 46.86 6.13
3033 3098 3.917760 CCTCATCCCCGAGTCGGC 61.918 72.222 26.60 0.00 46.86 5.54
3035 3100 4.271816 CGCCTCATCCCCGAGTCG 62.272 72.222 5.29 5.29 0.00 4.18
3036 3101 3.917760 CCGCCTCATCCCCGAGTC 61.918 72.222 0.00 0.00 0.00 3.36
3037 3102 4.458829 TCCGCCTCATCCCCGAGT 62.459 66.667 0.00 0.00 0.00 4.18
3038 3103 3.610669 CTCCGCCTCATCCCCGAG 61.611 72.222 0.00 0.00 0.00 4.63
3068 3133 2.951745 CGCGACGTCAGATCTGGC 60.952 66.667 22.42 20.11 0.00 4.85
3069 3134 2.951745 GCGCGACGTCAGATCTGG 60.952 66.667 22.42 9.99 0.00 3.86
3070 3135 3.308008 CGCGCGACGTCAGATCTG 61.308 66.667 28.94 17.07 36.87 2.90
3100 3165 4.980805 TGGTTGAGCCACCGACGC 62.981 66.667 0.00 0.00 43.61 5.19
3107 3172 4.947147 GGCACCGTGGTTGAGCCA 62.947 66.667 12.60 0.00 46.95 4.75
3137 3202 4.520846 CTCGCGCCGGTTGAATGC 62.521 66.667 1.90 0.00 0.00 3.56
3138 3203 4.520846 GCTCGCGCCGGTTGAATG 62.521 66.667 1.90 0.00 0.00 2.67
3139 3204 4.760047 AGCTCGCGCCGGTTGAAT 62.760 61.111 1.90 0.00 36.60 2.57
3149 3214 2.502080 AAACTCGTCGAGCTCGCG 60.502 61.111 32.47 32.47 39.60 5.87
3150 3215 1.399504 CTCAAACTCGTCGAGCTCGC 61.400 60.000 30.97 23.13 39.60 5.03
3151 3216 1.399504 GCTCAAACTCGTCGAGCTCG 61.400 60.000 30.03 30.03 46.86 5.03
3152 3217 2.354802 GCTCAAACTCGTCGAGCTC 58.645 57.895 22.00 2.73 46.86 4.09
3153 3218 4.561731 GCTCAAACTCGTCGAGCT 57.438 55.556 22.00 7.31 46.86 4.09
3161 3226 2.783064 CGCGCTCGAGCTCAAACTC 61.783 63.158 32.88 12.80 39.32 3.01
3162 3227 2.807045 CGCGCTCGAGCTCAAACT 60.807 61.111 32.88 0.00 39.32 2.66
3163 3228 4.491328 GCGCGCTCGAGCTCAAAC 62.491 66.667 32.88 15.06 37.92 2.93
3192 3257 3.760035 TTCACTCGGAGGAGGCGC 61.760 66.667 10.23 0.00 44.93 6.53
3193 3258 1.878656 AAGTTCACTCGGAGGAGGCG 61.879 60.000 10.23 0.00 44.93 5.52
3194 3259 1.183549 TAAGTTCACTCGGAGGAGGC 58.816 55.000 10.23 0.00 44.93 4.70
3195 3260 5.533482 CATAATAAGTTCACTCGGAGGAGG 58.467 45.833 10.23 0.00 44.93 4.30
3196 3261 4.985409 GCATAATAAGTTCACTCGGAGGAG 59.015 45.833 10.23 1.66 46.13 3.69
3197 3262 4.499188 CGCATAATAAGTTCACTCGGAGGA 60.499 45.833 10.23 1.12 0.00 3.71
3198 3263 3.736252 CGCATAATAAGTTCACTCGGAGG 59.264 47.826 10.23 0.00 0.00 4.30
3199 3264 4.607955 TCGCATAATAAGTTCACTCGGAG 58.392 43.478 2.83 2.83 0.00 4.63
3200 3265 4.642445 TCGCATAATAAGTTCACTCGGA 57.358 40.909 0.00 0.00 0.00 4.55
3201 3266 5.041287 TCTTCGCATAATAAGTTCACTCGG 58.959 41.667 0.00 0.00 0.00 4.63
3202 3267 6.472486 TCTTCTTCGCATAATAAGTTCACTCG 59.528 38.462 0.00 0.00 0.00 4.18
3203 3268 7.757097 TCTTCTTCGCATAATAAGTTCACTC 57.243 36.000 0.00 0.00 0.00 3.51
3204 3269 7.064728 GGTTCTTCTTCGCATAATAAGTTCACT 59.935 37.037 0.00 0.00 0.00 3.41
3205 3270 7.148474 TGGTTCTTCTTCGCATAATAAGTTCAC 60.148 37.037 0.00 0.00 0.00 3.18
3206 3271 6.876789 TGGTTCTTCTTCGCATAATAAGTTCA 59.123 34.615 0.00 0.00 0.00 3.18
3207 3272 7.303634 TGGTTCTTCTTCGCATAATAAGTTC 57.696 36.000 0.00 0.00 0.00 3.01
3208 3273 7.770897 AGATGGTTCTTCTTCGCATAATAAGTT 59.229 33.333 0.00 0.00 0.00 2.66
3209 3274 7.275920 AGATGGTTCTTCTTCGCATAATAAGT 58.724 34.615 0.00 0.00 0.00 2.24
3210 3275 7.721286 AGATGGTTCTTCTTCGCATAATAAG 57.279 36.000 0.00 0.00 0.00 1.73
3211 3276 9.208022 CATAGATGGTTCTTCTTCGCATAATAA 57.792 33.333 0.00 0.00 33.17 1.40
3212 3277 7.331934 GCATAGATGGTTCTTCTTCGCATAATA 59.668 37.037 0.00 0.00 33.17 0.98
3213 3278 6.148480 GCATAGATGGTTCTTCTTCGCATAAT 59.852 38.462 0.00 0.00 33.17 1.28
3214 3279 5.466728 GCATAGATGGTTCTTCTTCGCATAA 59.533 40.000 0.00 0.00 33.17 1.90
3215 3280 4.991056 GCATAGATGGTTCTTCTTCGCATA 59.009 41.667 0.00 0.00 33.17 3.14
3216 3281 3.812053 GCATAGATGGTTCTTCTTCGCAT 59.188 43.478 0.00 0.00 33.17 4.73
3217 3282 3.198068 GCATAGATGGTTCTTCTTCGCA 58.802 45.455 0.00 0.00 33.17 5.10
3218 3283 2.219674 CGCATAGATGGTTCTTCTTCGC 59.780 50.000 0.00 0.00 33.17 4.70
3219 3284 3.706698 TCGCATAGATGGTTCTTCTTCG 58.293 45.455 0.00 0.00 33.17 3.79
3220 3285 3.492756 GCTCGCATAGATGGTTCTTCTTC 59.507 47.826 0.00 0.00 33.17 2.87
3221 3286 3.462021 GCTCGCATAGATGGTTCTTCTT 58.538 45.455 0.00 0.00 33.17 2.52
3222 3287 2.544694 CGCTCGCATAGATGGTTCTTCT 60.545 50.000 0.00 0.00 33.17 2.85
3223 3288 1.789464 CGCTCGCATAGATGGTTCTTC 59.211 52.381 0.00 0.00 33.17 2.87
3224 3289 1.409064 TCGCTCGCATAGATGGTTCTT 59.591 47.619 0.00 0.00 33.17 2.52
3225 3290 1.000827 CTCGCTCGCATAGATGGTTCT 60.001 52.381 0.00 0.00 35.90 3.01
3226 3291 1.413382 CTCGCTCGCATAGATGGTTC 58.587 55.000 0.00 0.00 0.00 3.62
3227 3292 0.598680 GCTCGCTCGCATAGATGGTT 60.599 55.000 0.00 0.00 0.00 3.67
3228 3293 1.006805 GCTCGCTCGCATAGATGGT 60.007 57.895 0.00 0.00 0.00 3.55
3229 3294 0.732196 GAGCTCGCTCGCATAGATGG 60.732 60.000 0.00 0.00 33.06 3.51
3230 3295 0.732196 GGAGCTCGCTCGCATAGATG 60.732 60.000 7.83 0.00 43.59 2.90
3231 3296 1.583986 GGAGCTCGCTCGCATAGAT 59.416 57.895 7.83 0.00 43.59 1.98
3232 3297 2.897922 CGGAGCTCGCTCGCATAGA 61.898 63.158 7.83 0.00 43.59 1.98
3233 3298 2.428236 CGGAGCTCGCTCGCATAG 60.428 66.667 7.83 0.00 43.59 2.23
3234 3299 3.966104 CCGGAGCTCGCTCGCATA 61.966 66.667 7.83 0.00 43.59 3.14
3255 3320 2.180397 GCGAGAAATTTAAGCAGCAGC 58.820 47.619 0.00 0.00 42.56 5.25
3256 3321 2.434761 CGCGAGAAATTTAAGCAGCAG 58.565 47.619 0.00 0.00 0.00 4.24
3257 3322 1.465689 GCGCGAGAAATTTAAGCAGCA 60.466 47.619 12.10 0.00 0.00 4.41
3258 3323 1.183511 GCGCGAGAAATTTAAGCAGC 58.816 50.000 12.10 10.67 0.00 5.25
3259 3324 1.060553 TCGCGCGAGAAATTTAAGCAG 59.939 47.619 31.40 0.00 0.00 4.24
3260 3325 1.072391 TCGCGCGAGAAATTTAAGCA 58.928 45.000 31.40 0.54 0.00 3.91
3261 3326 2.153680 TTCGCGCGAGAAATTTAAGC 57.846 45.000 32.74 0.00 0.00 3.09
3262 3327 3.475242 TGTTTCGCGCGAGAAATTTAAG 58.525 40.909 34.40 0.00 41.46 1.85
3263 3328 3.523142 TGTTTCGCGCGAGAAATTTAA 57.477 38.095 34.40 19.30 41.46 1.52
3264 3329 3.059461 AGTTGTTTCGCGCGAGAAATTTA 60.059 39.130 34.40 22.82 41.46 1.40
3265 3330 2.041244 GTTGTTTCGCGCGAGAAATTT 58.959 42.857 34.40 0.00 41.46 1.82
3266 3331 1.263217 AGTTGTTTCGCGCGAGAAATT 59.737 42.857 34.40 20.36 41.46 1.82
3267 3332 0.865769 AGTTGTTTCGCGCGAGAAAT 59.134 45.000 34.40 21.55 41.46 2.17
3268 3333 0.653636 AAGTTGTTTCGCGCGAGAAA 59.346 45.000 32.74 29.99 37.74 2.52
3269 3334 0.653636 AAAGTTGTTTCGCGCGAGAA 59.346 45.000 32.74 24.62 0.00 2.87
3270 3335 0.653636 AAAAGTTGTTTCGCGCGAGA 59.346 45.000 32.74 26.60 0.00 4.04
3271 3336 1.462791 AAAAAGTTGTTTCGCGCGAG 58.537 45.000 32.74 7.02 0.00 5.03
3272 3337 3.607777 AAAAAGTTGTTTCGCGCGA 57.392 42.105 31.40 31.40 0.00 5.87
3295 3360 5.702065 ACCACAAACAAACCCCTATTTTT 57.298 34.783 0.00 0.00 0.00 1.94
3296 3361 5.702065 AACCACAAACAAACCCCTATTTT 57.298 34.783 0.00 0.00 0.00 1.82
3297 3362 5.427157 AGAAACCACAAACAAACCCCTATTT 59.573 36.000 0.00 0.00 0.00 1.40
3298 3363 4.966168 AGAAACCACAAACAAACCCCTATT 59.034 37.500 0.00 0.00 0.00 1.73
3299 3364 4.552674 AGAAACCACAAACAAACCCCTAT 58.447 39.130 0.00 0.00 0.00 2.57
3300 3365 3.983821 AGAAACCACAAACAAACCCCTA 58.016 40.909 0.00 0.00 0.00 3.53
3301 3366 2.827755 AGAAACCACAAACAAACCCCT 58.172 42.857 0.00 0.00 0.00 4.79
3302 3367 3.702548 ACTAGAAACCACAAACAAACCCC 59.297 43.478 0.00 0.00 0.00 4.95
3303 3368 4.643334 AGACTAGAAACCACAAACAAACCC 59.357 41.667 0.00 0.00 0.00 4.11
3304 3369 5.830000 AGACTAGAAACCACAAACAAACC 57.170 39.130 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.