Multiple sequence alignment - TraesCS2D01G347500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G347500 chr2D 100.000 2663 0 0 1 2663 445708185 445705523 0.000000e+00 4918.0
1 TraesCS2D01G347500 chr2D 82.955 264 35 7 2402 2663 649588776 649588521 2.060000e-56 230.0
2 TraesCS2D01G347500 chr2D 98.901 91 1 0 361 451 442447389 442447299 2.120000e-36 163.0
3 TraesCS2D01G347500 chr2A 91.346 1583 60 28 631 2184 588245801 588244267 0.000000e+00 2093.0
4 TraesCS2D01G347500 chr2A 87.305 449 29 12 211 636 588246266 588245823 3.080000e-134 488.0
5 TraesCS2D01G347500 chr2A 95.714 140 6 0 1 140 588246657 588246518 2.670000e-55 226.0
6 TraesCS2D01G347500 chr2A 96.117 103 2 2 362 462 586070626 586070524 1.640000e-37 167.0
7 TraesCS2D01G347500 chr2A 91.525 59 3 2 144 200 588246398 588246340 2.200000e-11 80.5
8 TraesCS2D01G347500 chr2A 94.000 50 3 0 2256 2305 617185657 617185608 2.840000e-10 76.8
9 TraesCS2D01G347500 chr2B 91.784 1424 51 23 789 2184 524003483 524002098 0.000000e+00 1921.0
10 TraesCS2D01G347500 chr2B 84.388 474 53 15 1 462 524004680 524004216 1.880000e-121 446.0
11 TraesCS2D01G347500 chr2B 89.316 234 13 6 363 588 524004171 524003942 1.560000e-72 283.0
12 TraesCS2D01G347500 chr2B 84.956 226 17 6 424 636 524003934 524003713 2.080000e-51 213.0
13 TraesCS2D01G347500 chr2B 97.000 100 2 1 361 459 522073099 522073000 1.640000e-37 167.0
14 TraesCS2D01G347500 chr2B 97.802 91 1 1 363 452 522073243 522073153 3.550000e-34 156.0
15 TraesCS2D01G347500 chr2B 88.235 51 6 0 2260 2310 583528131 583528081 7.960000e-06 62.1
16 TraesCS2D01G347500 chr4A 82.578 287 46 4 2378 2663 571644198 571644481 1.580000e-62 250.0
17 TraesCS2D01G347500 chr6D 82.353 289 40 9 2384 2663 405476690 405476404 9.530000e-60 241.0
18 TraesCS2D01G347500 chr5D 80.935 278 48 4 2386 2663 486478788 486478516 5.770000e-52 215.0
19 TraesCS2D01G347500 chr5D 98.824 85 1 0 361 445 126953679 126953763 4.590000e-33 152.0
20 TraesCS2D01G347500 chr3D 85.507 207 28 2 2457 2663 13718049 13717845 5.770000e-52 215.0
21 TraesCS2D01G347500 chr3D 85.714 91 4 8 2224 2313 92914725 92914643 1.310000e-13 87.9
22 TraesCS2D01G347500 chr1A 85.024 207 26 4 2461 2663 562895146 562894941 3.470000e-49 206.0
23 TraesCS2D01G347500 chr4B 79.926 269 52 2 2382 2650 510170495 510170229 2.090000e-46 196.0
24 TraesCS2D01G347500 chr7D 84.817 191 26 3 2468 2658 4179851 4179664 3.500000e-44 189.0
25 TraesCS2D01G347500 chr1D 78.700 277 49 9 2381 2652 413858345 413858616 2.720000e-40 176.0
26 TraesCS2D01G347500 chr1D 86.777 121 11 5 2189 2307 471758315 471758432 2.150000e-26 130.0
27 TraesCS2D01G347500 chr5A 98.824 85 1 0 361 445 142746864 142746948 4.590000e-33 152.0
28 TraesCS2D01G347500 chr5A 92.982 57 4 0 2258 2314 678207328 678207384 1.700000e-12 84.2
29 TraesCS2D01G347500 chr5B 90.000 60 6 0 2256 2315 447221392 447221451 7.900000e-11 78.7
30 TraesCS2D01G347500 chr5B 90.909 55 5 0 2261 2315 446356993 446356939 1.020000e-09 75.0
31 TraesCS2D01G347500 chr3A 79.130 115 18 5 2198 2311 666124627 666124736 1.020000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G347500 chr2D 445705523 445708185 2662 True 4918.000 4918 100.0000 1 2663 1 chr2D.!!$R2 2662
1 TraesCS2D01G347500 chr2A 588244267 588246657 2390 True 721.875 2093 91.4725 1 2184 4 chr2A.!!$R3 2183
2 TraesCS2D01G347500 chr2B 524002098 524004680 2582 True 715.750 1921 87.6110 1 2184 4 chr2B.!!$R3 2183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1613 0.931662 CACAGCGAGCAAAGCAACAC 60.932 55.0 0.0 0.0 37.01 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 3122 0.032815 TGTTGACTGACGCATCCGAA 59.967 50.0 0.0 0.0 38.29 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.907894 TTAAGTTGTGCGGAAACCATC 57.092 42.857 0.00 0.00 0.00 3.51
202 322 2.445682 GAGTAGCTCTCCTCTTCCCA 57.554 55.000 0.00 0.00 37.22 4.37
203 323 2.306847 GAGTAGCTCTCCTCTTCCCAG 58.693 57.143 0.00 0.00 37.22 4.45
206 326 3.724738 AGTAGCTCTCCTCTTCCCAGATA 59.275 47.826 0.00 0.00 0.00 1.98
208 328 5.553953 AGTAGCTCTCCTCTTCCCAGATATA 59.446 44.000 0.00 0.00 0.00 0.86
209 329 5.550829 AGCTCTCCTCTTCCCAGATATAT 57.449 43.478 0.00 0.00 0.00 0.86
414 605 9.323985 GAAGACTTAAGATCTTCTGCACATAAT 57.676 33.333 25.02 4.87 45.77 1.28
619 1148 2.609002 GTGTACCGTTGTTCGTCCTTTT 59.391 45.455 0.00 0.00 37.94 2.27
642 1200 4.713824 TTTCCGAGTCATACCAGTACAG 57.286 45.455 0.00 0.00 0.00 2.74
651 1211 5.715279 AGTCATACCAGTACAGTGCTTCTAA 59.285 40.000 0.00 0.00 0.00 2.10
736 1296 3.055385 TCAAGACCCGGGAAAATAGAGTG 60.055 47.826 32.02 11.25 0.00 3.51
752 1312 1.128692 GAGTGCGTCCCAAATTCTTCG 59.871 52.381 0.00 0.00 0.00 3.79
773 1333 5.765176 TCGTCGACTGAACTCTCATTTTTA 58.235 37.500 14.70 0.00 0.00 1.52
811 1421 4.079665 TCGACTGAACTCTTGACATACG 57.920 45.455 0.00 0.00 0.00 3.06
815 1425 3.193691 ACTGAACTCTTGACATACGAGGG 59.806 47.826 0.00 0.00 36.58 4.30
848 1458 8.360390 AGCACTTTATCCCTTTTACAAGAAAAG 58.640 33.333 3.32 3.32 37.08 2.27
956 1577 1.009389 CCCAACTCAACTCGAGCGAC 61.009 60.000 13.61 0.00 46.63 5.19
987 1612 1.356270 CACAGCGAGCAAAGCAACA 59.644 52.632 0.00 0.00 37.01 3.33
988 1613 0.931662 CACAGCGAGCAAAGCAACAC 60.932 55.000 0.00 0.00 37.01 3.32
989 1614 1.097547 ACAGCGAGCAAAGCAACACT 61.098 50.000 0.00 0.00 37.01 3.55
1095 1720 4.796231 CCCTTGCCGTCTCCGTCG 62.796 72.222 0.00 0.00 0.00 5.12
1347 1975 2.572284 GACGTGGAGGAGTTCGGG 59.428 66.667 0.00 0.00 0.00 5.14
1371 1999 0.464036 TCTACCGCACCATCATGTCC 59.536 55.000 0.00 0.00 0.00 4.02
1378 2006 2.896854 CCATCATGTCCACGGGCG 60.897 66.667 0.00 0.00 0.00 6.13
1380 2008 3.399181 ATCATGTCCACGGGCGGT 61.399 61.111 0.00 0.00 0.00 5.68
1406 2034 4.148825 CCAGAAGGGCTCGTCGGG 62.149 72.222 4.08 4.08 31.90 5.14
1407 2035 4.821589 CAGAAGGGCTCGTCGGGC 62.822 72.222 9.11 9.11 0.00 6.13
1705 2354 1.269448 CGCTTTGTATGCTTGGTTGGT 59.731 47.619 0.00 0.00 0.00 3.67
1706 2355 2.486203 CGCTTTGTATGCTTGGTTGGTA 59.514 45.455 0.00 0.00 0.00 3.25
1707 2356 3.669557 CGCTTTGTATGCTTGGTTGGTAC 60.670 47.826 0.00 0.00 0.00 3.34
1978 2627 2.670414 CGCCAGATTCTGTCAACTCTTC 59.330 50.000 12.54 0.00 0.00 2.87
2039 2688 1.251527 ACATTCCGGCAGAGTCTCGT 61.252 55.000 0.00 0.00 0.00 4.18
2086 2739 3.852286 TGGATCTGAAATGTGCAATTGC 58.148 40.909 23.69 23.69 42.50 3.56
2103 2765 1.432514 TGCGCATCAAGAGTTGAGTC 58.567 50.000 5.66 0.00 43.98 3.36
2104 2766 0.723981 GCGCATCAAGAGTTGAGTCC 59.276 55.000 0.30 0.00 43.98 3.85
2105 2767 1.363744 CGCATCAAGAGTTGAGTCCC 58.636 55.000 0.00 0.00 43.98 4.46
2107 2769 1.280421 GCATCAAGAGTTGAGTCCCCT 59.720 52.381 0.00 0.00 43.98 4.79
2108 2770 2.290577 GCATCAAGAGTTGAGTCCCCTT 60.291 50.000 0.00 0.00 43.98 3.95
2109 2771 3.812167 GCATCAAGAGTTGAGTCCCCTTT 60.812 47.826 0.00 0.00 43.98 3.11
2113 2775 1.705745 AGAGTTGAGTCCCCTTTTCCC 59.294 52.381 0.00 0.00 0.00 3.97
2114 2776 0.400594 AGTTGAGTCCCCTTTTCCCG 59.599 55.000 0.00 0.00 0.00 5.14
2115 2777 1.074248 TTGAGTCCCCTTTTCCCGC 59.926 57.895 0.00 0.00 0.00 6.13
2116 2778 1.423794 TTGAGTCCCCTTTTCCCGCT 61.424 55.000 0.00 0.00 0.00 5.52
2117 2779 0.545787 TGAGTCCCCTTTTCCCGCTA 60.546 55.000 0.00 0.00 0.00 4.26
2118 2780 0.837940 GAGTCCCCTTTTCCCGCTAT 59.162 55.000 0.00 0.00 0.00 2.97
2119 2781 1.212195 GAGTCCCCTTTTCCCGCTATT 59.788 52.381 0.00 0.00 0.00 1.73
2120 2782 2.436911 GAGTCCCCTTTTCCCGCTATTA 59.563 50.000 0.00 0.00 0.00 0.98
2169 2852 2.202810 GCTCAGCGGCTACCTCAC 60.203 66.667 0.26 0.00 0.00 3.51
2184 2867 6.586844 GGCTACCTCACACGAATTAGATATTC 59.413 42.308 0.00 0.00 0.00 1.75
2185 2868 7.145985 GCTACCTCACACGAATTAGATATTCA 58.854 38.462 0.00 0.00 0.00 2.57
2186 2869 7.327275 GCTACCTCACACGAATTAGATATTCAG 59.673 40.741 0.00 0.00 0.00 3.02
2187 2870 7.113658 ACCTCACACGAATTAGATATTCAGT 57.886 36.000 0.00 0.00 0.00 3.41
2188 2871 7.203910 ACCTCACACGAATTAGATATTCAGTC 58.796 38.462 0.00 0.00 0.00 3.51
2189 2872 7.068839 ACCTCACACGAATTAGATATTCAGTCT 59.931 37.037 0.00 0.00 0.00 3.24
2190 2873 7.923344 CCTCACACGAATTAGATATTCAGTCTT 59.077 37.037 0.00 0.00 0.00 3.01
2191 2874 9.307121 CTCACACGAATTAGATATTCAGTCTTT 57.693 33.333 0.00 0.00 0.00 2.52
2192 2875 9.087424 TCACACGAATTAGATATTCAGTCTTTG 57.913 33.333 0.00 0.00 0.00 2.77
2193 2876 9.087424 CACACGAATTAGATATTCAGTCTTTGA 57.913 33.333 0.00 0.00 0.00 2.69
2194 2877 9.823647 ACACGAATTAGATATTCAGTCTTTGAT 57.176 29.630 0.00 0.00 35.27 2.57
2200 2883 8.791327 TTAGATATTCAGTCTTTGATTGTGCA 57.209 30.769 0.00 0.00 35.27 4.57
2201 2884 7.876936 AGATATTCAGTCTTTGATTGTGCAT 57.123 32.000 0.00 0.00 35.27 3.96
2202 2885 8.969260 AGATATTCAGTCTTTGATTGTGCATA 57.031 30.769 0.00 0.00 35.27 3.14
2203 2886 9.053840 AGATATTCAGTCTTTGATTGTGCATAG 57.946 33.333 0.00 0.00 35.27 2.23
2204 2887 8.969260 ATATTCAGTCTTTGATTGTGCATAGA 57.031 30.769 0.00 0.00 35.27 1.98
2205 2888 6.732531 TTCAGTCTTTGATTGTGCATAGAG 57.267 37.500 0.00 0.00 35.27 2.43
2206 2889 6.041423 TCAGTCTTTGATTGTGCATAGAGA 57.959 37.500 0.00 0.00 0.00 3.10
2207 2890 6.647229 TCAGTCTTTGATTGTGCATAGAGAT 58.353 36.000 0.00 0.00 0.00 2.75
2208 2891 7.108194 TCAGTCTTTGATTGTGCATAGAGATT 58.892 34.615 0.00 0.00 0.00 2.40
2209 2892 7.279536 TCAGTCTTTGATTGTGCATAGAGATTC 59.720 37.037 0.00 0.00 0.00 2.52
2210 2893 6.257411 AGTCTTTGATTGTGCATAGAGATTCG 59.743 38.462 0.00 0.00 0.00 3.34
2211 2894 6.036517 GTCTTTGATTGTGCATAGAGATTCGT 59.963 38.462 0.00 0.00 0.00 3.85
2212 2895 5.723492 TTGATTGTGCATAGAGATTCGTG 57.277 39.130 0.00 0.00 0.00 4.35
2213 2896 3.557185 TGATTGTGCATAGAGATTCGTGC 59.443 43.478 0.00 0.00 34.84 5.34
2214 2897 2.671130 TGTGCATAGAGATTCGTGCA 57.329 45.000 0.00 7.69 39.35 4.57
2215 2898 2.971307 TGTGCATAGAGATTCGTGCAA 58.029 42.857 11.69 3.62 41.73 4.08
2216 2899 3.333804 TGTGCATAGAGATTCGTGCAAA 58.666 40.909 11.69 6.17 41.73 3.68
2217 2900 3.750652 TGTGCATAGAGATTCGTGCAAAA 59.249 39.130 11.69 0.00 41.73 2.44
2218 2901 4.215185 TGTGCATAGAGATTCGTGCAAAAA 59.785 37.500 11.69 0.00 41.73 1.94
2284 2967 8.516811 TCACTTGACTTAGACTTCGTTAAATC 57.483 34.615 0.00 0.00 0.00 2.17
2285 2968 8.358148 TCACTTGACTTAGACTTCGTTAAATCT 58.642 33.333 0.00 0.00 0.00 2.40
2286 2969 8.640291 CACTTGACTTAGACTTCGTTAAATCTC 58.360 37.037 0.00 0.00 0.00 2.75
2287 2970 8.358148 ACTTGACTTAGACTTCGTTAAATCTCA 58.642 33.333 0.00 0.00 0.00 3.27
2288 2971 8.744008 TTGACTTAGACTTCGTTAAATCTCAG 57.256 34.615 0.00 0.00 0.00 3.35
2289 2972 7.883217 TGACTTAGACTTCGTTAAATCTCAGT 58.117 34.615 0.00 0.00 30.23 3.41
2290 2973 8.021973 TGACTTAGACTTCGTTAAATCTCAGTC 58.978 37.037 7.26 7.26 40.49 3.51
2291 2974 7.883217 ACTTAGACTTCGTTAAATCTCAGTCA 58.117 34.615 0.00 0.00 34.33 3.41
2292 2975 8.358148 ACTTAGACTTCGTTAAATCTCAGTCAA 58.642 33.333 0.00 0.00 34.33 3.18
2293 2976 8.516811 TTAGACTTCGTTAAATCTCAGTCAAC 57.483 34.615 0.00 0.00 34.33 3.18
2294 2977 6.750148 AGACTTCGTTAAATCTCAGTCAACT 58.250 36.000 0.00 0.00 34.33 3.16
2295 2978 6.642950 AGACTTCGTTAAATCTCAGTCAACTG 59.357 38.462 3.69 3.69 45.08 3.16
2305 2988 2.663826 CAGTCAACTGAGACCTAGCC 57.336 55.000 4.05 0.00 46.59 3.93
2306 2989 1.895798 CAGTCAACTGAGACCTAGCCA 59.104 52.381 4.05 0.00 46.59 4.75
2307 2990 1.896465 AGTCAACTGAGACCTAGCCAC 59.104 52.381 0.00 0.00 39.34 5.01
2308 2991 1.618837 GTCAACTGAGACCTAGCCACA 59.381 52.381 0.00 0.00 32.36 4.17
2309 2992 1.618837 TCAACTGAGACCTAGCCACAC 59.381 52.381 0.00 0.00 0.00 3.82
2310 2993 1.344438 CAACTGAGACCTAGCCACACA 59.656 52.381 0.00 0.00 0.00 3.72
2311 2994 0.969894 ACTGAGACCTAGCCACACAC 59.030 55.000 0.00 0.00 0.00 3.82
2312 2995 1.261480 CTGAGACCTAGCCACACACT 58.739 55.000 0.00 0.00 0.00 3.55
2313 2996 1.620819 CTGAGACCTAGCCACACACTT 59.379 52.381 0.00 0.00 0.00 3.16
2314 2997 2.826128 CTGAGACCTAGCCACACACTTA 59.174 50.000 0.00 0.00 0.00 2.24
2315 2998 2.826128 TGAGACCTAGCCACACACTTAG 59.174 50.000 0.00 0.00 0.00 2.18
2316 2999 3.090037 GAGACCTAGCCACACACTTAGA 58.910 50.000 0.00 0.00 0.00 2.10
2317 3000 3.702045 GAGACCTAGCCACACACTTAGAT 59.298 47.826 0.00 0.00 0.00 1.98
2318 3001 4.868268 AGACCTAGCCACACACTTAGATA 58.132 43.478 0.00 0.00 0.00 1.98
2319 3002 5.459505 AGACCTAGCCACACACTTAGATAT 58.540 41.667 0.00 0.00 0.00 1.63
2320 3003 5.900123 AGACCTAGCCACACACTTAGATATT 59.100 40.000 0.00 0.00 0.00 1.28
2321 3004 6.384305 AGACCTAGCCACACACTTAGATATTT 59.616 38.462 0.00 0.00 0.00 1.40
2322 3005 6.349300 ACCTAGCCACACACTTAGATATTTG 58.651 40.000 0.00 0.00 0.00 2.32
2323 3006 6.070194 ACCTAGCCACACACTTAGATATTTGT 60.070 38.462 0.00 0.00 0.00 2.83
2324 3007 6.258727 CCTAGCCACACACTTAGATATTTGTG 59.741 42.308 0.00 0.00 44.09 3.33
2331 3014 7.763172 CACACTTAGATATTTGTGTCCTCTC 57.237 40.000 0.00 0.00 41.04 3.20
2332 3015 6.758886 CACACTTAGATATTTGTGTCCTCTCC 59.241 42.308 0.00 0.00 41.04 3.71
2333 3016 5.980116 CACTTAGATATTTGTGTCCTCTCCG 59.020 44.000 0.00 0.00 0.00 4.63
2334 3017 5.069251 ACTTAGATATTTGTGTCCTCTCCGG 59.931 44.000 0.00 0.00 0.00 5.14
2335 3018 2.103263 AGATATTTGTGTCCTCTCCGGC 59.897 50.000 0.00 0.00 0.00 6.13
2336 3019 1.568504 TATTTGTGTCCTCTCCGGCT 58.431 50.000 0.00 0.00 0.00 5.52
2337 3020 0.250513 ATTTGTGTCCTCTCCGGCTC 59.749 55.000 0.00 0.00 0.00 4.70
2338 3021 1.827399 TTTGTGTCCTCTCCGGCTCC 61.827 60.000 0.00 0.00 0.00 4.70
2339 3022 3.462678 GTGTCCTCTCCGGCTCCC 61.463 72.222 0.00 0.00 0.00 4.30
2340 3023 4.779733 TGTCCTCTCCGGCTCCCC 62.780 72.222 0.00 0.00 0.00 4.81
2359 3042 4.737346 CCCCCAGACTAGGAGCAT 57.263 61.111 0.00 0.00 0.00 3.79
2360 3043 2.936823 CCCCCAGACTAGGAGCATT 58.063 57.895 0.00 0.00 0.00 3.56
2361 3044 0.471617 CCCCCAGACTAGGAGCATTG 59.528 60.000 0.00 0.00 0.00 2.82
2362 3045 0.179034 CCCCAGACTAGGAGCATTGC 60.179 60.000 0.00 0.00 0.00 3.56
2363 3046 0.543277 CCCAGACTAGGAGCATTGCA 59.457 55.000 11.91 0.00 0.00 4.08
2364 3047 1.474677 CCCAGACTAGGAGCATTGCAG 60.475 57.143 11.91 1.67 0.00 4.41
2365 3048 1.297664 CAGACTAGGAGCATTGCAGC 58.702 55.000 11.91 2.12 0.00 5.25
2366 3049 0.907486 AGACTAGGAGCATTGCAGCA 59.093 50.000 11.91 0.00 36.85 4.41
2367 3050 1.280133 AGACTAGGAGCATTGCAGCAA 59.720 47.619 11.07 11.07 36.85 3.91
2368 3051 2.086869 GACTAGGAGCATTGCAGCAAA 58.913 47.619 12.97 0.00 36.85 3.68
2369 3052 2.089980 ACTAGGAGCATTGCAGCAAAG 58.910 47.619 12.97 9.22 36.85 2.77
2370 3053 2.290514 ACTAGGAGCATTGCAGCAAAGA 60.291 45.455 12.97 0.00 36.85 2.52
2371 3054 1.174783 AGGAGCATTGCAGCAAAGAG 58.825 50.000 12.97 6.58 36.85 2.85
2372 3055 0.458025 GGAGCATTGCAGCAAAGAGC 60.458 55.000 12.97 16.11 46.19 4.09
2385 3068 4.423625 GCAAAGAGCTAGGGGAATAAGA 57.576 45.455 0.00 0.00 41.15 2.10
2386 3069 4.384940 GCAAAGAGCTAGGGGAATAAGAG 58.615 47.826 0.00 0.00 41.15 2.85
2387 3070 4.384940 CAAAGAGCTAGGGGAATAAGAGC 58.615 47.826 0.00 0.00 0.00 4.09
2388 3071 3.336509 AGAGCTAGGGGAATAAGAGCA 57.663 47.619 0.00 0.00 35.55 4.26
2389 3072 3.868062 AGAGCTAGGGGAATAAGAGCAT 58.132 45.455 0.00 0.00 35.55 3.79
2390 3073 3.837731 AGAGCTAGGGGAATAAGAGCATC 59.162 47.826 0.00 0.00 35.55 3.91
2410 3093 1.268079 CTGTCAGCGAGACTTGACAGA 59.732 52.381 23.01 3.27 46.45 3.41
2411 3094 2.094803 CTGTCAGCGAGACTTGACAGAT 60.095 50.000 23.01 0.00 46.45 2.90
2412 3095 2.525055 GTCAGCGAGACTTGACAGATC 58.475 52.381 5.26 0.00 44.09 2.75
2413 3096 1.474478 TCAGCGAGACTTGACAGATCC 59.526 52.381 0.00 0.00 0.00 3.36
2414 3097 0.453793 AGCGAGACTTGACAGATCCG 59.546 55.000 0.00 0.00 0.00 4.18
2415 3098 0.526524 GCGAGACTTGACAGATCCGG 60.527 60.000 0.00 0.00 0.00 5.14
2416 3099 0.811915 CGAGACTTGACAGATCCGGT 59.188 55.000 0.00 0.00 0.00 5.28
2417 3100 1.202200 CGAGACTTGACAGATCCGGTC 60.202 57.143 0.00 7.92 35.83 4.79
2418 3101 1.135333 GAGACTTGACAGATCCGGTCC 59.865 57.143 0.00 0.00 34.36 4.46
2419 3102 0.175989 GACTTGACAGATCCGGTCCC 59.824 60.000 0.00 0.00 34.36 4.46
2420 3103 0.252284 ACTTGACAGATCCGGTCCCT 60.252 55.000 0.00 0.00 34.36 4.20
2421 3104 0.905357 CTTGACAGATCCGGTCCCTT 59.095 55.000 0.00 0.00 34.36 3.95
2422 3105 2.108168 CTTGACAGATCCGGTCCCTTA 58.892 52.381 0.00 0.00 34.36 2.69
2423 3106 2.241281 TGACAGATCCGGTCCCTTAA 57.759 50.000 0.00 0.00 34.36 1.85
2424 3107 2.542550 TGACAGATCCGGTCCCTTAAA 58.457 47.619 0.00 0.00 34.36 1.52
2425 3108 2.235402 TGACAGATCCGGTCCCTTAAAC 59.765 50.000 0.00 0.00 34.36 2.01
2426 3109 1.206371 ACAGATCCGGTCCCTTAAACG 59.794 52.381 0.00 0.00 0.00 3.60
2427 3110 0.177373 AGATCCGGTCCCTTAAACGC 59.823 55.000 0.00 0.00 0.00 4.84
2428 3111 0.812811 GATCCGGTCCCTTAAACGCC 60.813 60.000 0.00 0.00 0.00 5.68
2429 3112 2.261430 ATCCGGTCCCTTAAACGCCC 62.261 60.000 0.00 0.00 0.00 6.13
2430 3113 2.348243 CGGTCCCTTAAACGCCCA 59.652 61.111 0.00 0.00 0.00 5.36
2431 3114 2.036571 CGGTCCCTTAAACGCCCAC 61.037 63.158 0.00 0.00 0.00 4.61
2433 3116 2.036571 GTCCCTTAAACGCCCACGG 61.037 63.158 0.00 0.00 46.04 4.94
2434 3117 2.215625 TCCCTTAAACGCCCACGGA 61.216 57.895 0.00 0.00 46.04 4.69
2435 3118 2.036571 CCCTTAAACGCCCACGGAC 61.037 63.158 0.00 0.00 46.04 4.79
2436 3119 1.301874 CCTTAAACGCCCACGGACA 60.302 57.895 0.00 0.00 46.04 4.02
2437 3120 1.571215 CCTTAAACGCCCACGGACAC 61.571 60.000 0.00 0.00 46.04 3.67
2438 3121 1.893168 CTTAAACGCCCACGGACACG 61.893 60.000 0.00 0.00 46.04 4.49
2448 3131 3.541831 CGGACACGTTCGGATGCG 61.542 66.667 0.00 0.00 34.81 4.73
2449 3132 2.431942 GGACACGTTCGGATGCGT 60.432 61.111 6.49 2.93 42.45 5.24
2450 3133 2.442188 GGACACGTTCGGATGCGTC 61.442 63.158 6.49 0.00 39.48 5.19
2451 3134 1.731613 GACACGTTCGGATGCGTCA 60.732 57.895 6.49 0.00 39.48 4.35
2452 3135 1.674611 GACACGTTCGGATGCGTCAG 61.675 60.000 6.49 3.65 39.48 3.51
2453 3136 1.733041 CACGTTCGGATGCGTCAGT 60.733 57.895 6.49 2.16 39.48 3.41
2454 3137 1.443872 ACGTTCGGATGCGTCAGTC 60.444 57.895 6.49 1.68 36.54 3.51
2455 3138 1.443702 CGTTCGGATGCGTCAGTCA 60.444 57.895 6.49 0.00 0.00 3.41
2456 3139 1.006825 CGTTCGGATGCGTCAGTCAA 61.007 55.000 6.49 0.00 0.00 3.18
2457 3140 0.438830 GTTCGGATGCGTCAGTCAAC 59.561 55.000 6.49 1.79 0.00 3.18
2458 3141 0.032815 TTCGGATGCGTCAGTCAACA 59.967 50.000 6.49 0.00 0.00 3.33
2459 3142 0.666274 TCGGATGCGTCAGTCAACAC 60.666 55.000 6.49 0.00 0.00 3.32
2460 3143 0.667487 CGGATGCGTCAGTCAACACT 60.667 55.000 8.47 0.00 0.00 3.55
2472 3155 1.532868 GTCAACACTGACCAGTCATGC 59.467 52.381 0.04 0.00 45.41 4.06
2473 3156 0.877071 CAACACTGACCAGTCATGCC 59.123 55.000 0.04 0.00 40.20 4.40
2474 3157 0.767375 AACACTGACCAGTCATGCCT 59.233 50.000 0.04 0.00 40.20 4.75
2475 3158 0.322975 ACACTGACCAGTCATGCCTC 59.677 55.000 0.04 0.00 40.20 4.70
2476 3159 0.322648 CACTGACCAGTCATGCCTCA 59.677 55.000 0.04 0.00 40.20 3.86
2477 3160 1.059098 ACTGACCAGTCATGCCTCAA 58.941 50.000 0.04 0.00 36.92 3.02
2478 3161 1.421268 ACTGACCAGTCATGCCTCAAA 59.579 47.619 0.04 0.00 36.92 2.69
2479 3162 2.040813 ACTGACCAGTCATGCCTCAAAT 59.959 45.455 0.04 0.00 36.92 2.32
2480 3163 3.087031 CTGACCAGTCATGCCTCAAATT 58.913 45.455 0.04 0.00 39.13 1.82
2481 3164 4.263462 ACTGACCAGTCATGCCTCAAATTA 60.263 41.667 0.04 0.00 36.92 1.40
2482 3165 4.009675 TGACCAGTCATGCCTCAAATTAC 58.990 43.478 0.00 0.00 34.14 1.89
2483 3166 3.356290 ACCAGTCATGCCTCAAATTACC 58.644 45.455 0.00 0.00 0.00 2.85
2484 3167 3.010584 ACCAGTCATGCCTCAAATTACCT 59.989 43.478 0.00 0.00 0.00 3.08
2485 3168 4.227300 ACCAGTCATGCCTCAAATTACCTA 59.773 41.667 0.00 0.00 0.00 3.08
2486 3169 5.103940 ACCAGTCATGCCTCAAATTACCTAT 60.104 40.000 0.00 0.00 0.00 2.57
2487 3170 5.829924 CCAGTCATGCCTCAAATTACCTATT 59.170 40.000 0.00 0.00 0.00 1.73
2488 3171 6.016777 CCAGTCATGCCTCAAATTACCTATTC 60.017 42.308 0.00 0.00 0.00 1.75
2489 3172 6.769822 CAGTCATGCCTCAAATTACCTATTCT 59.230 38.462 0.00 0.00 0.00 2.40
2490 3173 6.995091 AGTCATGCCTCAAATTACCTATTCTC 59.005 38.462 0.00 0.00 0.00 2.87
2491 3174 6.205658 GTCATGCCTCAAATTACCTATTCTCC 59.794 42.308 0.00 0.00 0.00 3.71
2492 3175 5.708736 TGCCTCAAATTACCTATTCTCCA 57.291 39.130 0.00 0.00 0.00 3.86
2493 3176 6.266131 TGCCTCAAATTACCTATTCTCCAT 57.734 37.500 0.00 0.00 0.00 3.41
2494 3177 6.672593 TGCCTCAAATTACCTATTCTCCATT 58.327 36.000 0.00 0.00 0.00 3.16
2495 3178 6.772716 TGCCTCAAATTACCTATTCTCCATTC 59.227 38.462 0.00 0.00 0.00 2.67
2496 3179 6.073003 GCCTCAAATTACCTATTCTCCATTCG 60.073 42.308 0.00 0.00 0.00 3.34
2497 3180 7.217200 CCTCAAATTACCTATTCTCCATTCGA 58.783 38.462 0.00 0.00 0.00 3.71
2498 3181 7.386299 CCTCAAATTACCTATTCTCCATTCGAG 59.614 40.741 0.00 0.00 40.30 4.04
2499 3182 7.792032 TCAAATTACCTATTCTCCATTCGAGT 58.208 34.615 0.00 0.00 39.84 4.18
2500 3183 7.926555 TCAAATTACCTATTCTCCATTCGAGTC 59.073 37.037 0.00 0.00 39.84 3.36
2501 3184 7.604657 AATTACCTATTCTCCATTCGAGTCT 57.395 36.000 0.00 0.00 39.84 3.24
2502 3185 6.636562 TTACCTATTCTCCATTCGAGTCTC 57.363 41.667 0.00 0.00 39.84 3.36
2503 3186 4.798882 ACCTATTCTCCATTCGAGTCTCT 58.201 43.478 0.00 0.00 39.84 3.10
2504 3187 4.825085 ACCTATTCTCCATTCGAGTCTCTC 59.175 45.833 0.00 0.00 39.84 3.20
2505 3188 4.824537 CCTATTCTCCATTCGAGTCTCTCA 59.175 45.833 0.00 0.00 39.84 3.27
2506 3189 5.476599 CCTATTCTCCATTCGAGTCTCTCAT 59.523 44.000 0.00 0.00 39.84 2.90
2507 3190 6.657117 CCTATTCTCCATTCGAGTCTCTCATA 59.343 42.308 0.00 0.00 39.84 2.15
2508 3191 7.339212 CCTATTCTCCATTCGAGTCTCTCATAT 59.661 40.741 0.00 0.00 39.84 1.78
2509 3192 6.968263 TTCTCCATTCGAGTCTCTCATATT 57.032 37.500 0.00 0.00 39.84 1.28
2510 3193 6.968263 TCTCCATTCGAGTCTCTCATATTT 57.032 37.500 0.00 0.00 39.84 1.40
2511 3194 6.976088 TCTCCATTCGAGTCTCTCATATTTC 58.024 40.000 0.00 0.00 39.84 2.17
2512 3195 6.547510 TCTCCATTCGAGTCTCTCATATTTCA 59.452 38.462 0.00 0.00 39.84 2.69
2513 3196 7.068716 TCTCCATTCGAGTCTCTCATATTTCAA 59.931 37.037 0.00 0.00 39.84 2.69
2514 3197 6.980978 TCCATTCGAGTCTCTCATATTTCAAC 59.019 38.462 0.00 0.00 0.00 3.18
2515 3198 6.201806 CCATTCGAGTCTCTCATATTTCAACC 59.798 42.308 0.00 0.00 0.00 3.77
2516 3199 5.263968 TCGAGTCTCTCATATTTCAACCC 57.736 43.478 0.00 0.00 0.00 4.11
2517 3200 4.099573 TCGAGTCTCTCATATTTCAACCCC 59.900 45.833 0.00 0.00 0.00 4.95
2518 3201 4.100189 CGAGTCTCTCATATTTCAACCCCT 59.900 45.833 0.00 0.00 0.00 4.79
2519 3202 5.302059 CGAGTCTCTCATATTTCAACCCCTA 59.698 44.000 0.00 0.00 0.00 3.53
2520 3203 6.183360 CGAGTCTCTCATATTTCAACCCCTAA 60.183 42.308 0.00 0.00 0.00 2.69
2521 3204 7.510675 AGTCTCTCATATTTCAACCCCTAAA 57.489 36.000 0.00 0.00 0.00 1.85
2522 3205 8.107196 AGTCTCTCATATTTCAACCCCTAAAT 57.893 34.615 0.00 0.00 0.00 1.40
2523 3206 8.214364 AGTCTCTCATATTTCAACCCCTAAATC 58.786 37.037 0.00 0.00 0.00 2.17
2524 3207 7.445707 GTCTCTCATATTTCAACCCCTAAATCC 59.554 40.741 0.00 0.00 0.00 3.01
2525 3208 7.128728 TCTCTCATATTTCAACCCCTAAATCCA 59.871 37.037 0.00 0.00 0.00 3.41
2526 3209 7.825709 TCTCATATTTCAACCCCTAAATCCAT 58.174 34.615 0.00 0.00 0.00 3.41
2527 3210 8.954729 TCTCATATTTCAACCCCTAAATCCATA 58.045 33.333 0.00 0.00 0.00 2.74
2528 3211 8.934023 TCATATTTCAACCCCTAAATCCATAC 57.066 34.615 0.00 0.00 0.00 2.39
2529 3212 8.506921 TCATATTTCAACCCCTAAATCCATACA 58.493 33.333 0.00 0.00 0.00 2.29
2530 3213 9.142014 CATATTTCAACCCCTAAATCCATACAA 57.858 33.333 0.00 0.00 0.00 2.41
2531 3214 9.722317 ATATTTCAACCCCTAAATCCATACAAA 57.278 29.630 0.00 0.00 0.00 2.83
2532 3215 7.857404 TTTCAACCCCTAAATCCATACAAAA 57.143 32.000 0.00 0.00 0.00 2.44
2533 3216 7.475137 TTCAACCCCTAAATCCATACAAAAG 57.525 36.000 0.00 0.00 0.00 2.27
2534 3217 5.420739 TCAACCCCTAAATCCATACAAAAGC 59.579 40.000 0.00 0.00 0.00 3.51
2535 3218 4.941713 ACCCCTAAATCCATACAAAAGCA 58.058 39.130 0.00 0.00 0.00 3.91
2536 3219 5.528337 ACCCCTAAATCCATACAAAAGCAT 58.472 37.500 0.00 0.00 0.00 3.79
2537 3220 5.363580 ACCCCTAAATCCATACAAAAGCATG 59.636 40.000 0.00 0.00 0.00 4.06
2538 3221 5.291971 CCCTAAATCCATACAAAAGCATGC 58.708 41.667 10.51 10.51 0.00 4.06
2539 3222 5.163426 CCCTAAATCCATACAAAAGCATGCA 60.163 40.000 21.98 0.00 0.00 3.96
2540 3223 6.339730 CCTAAATCCATACAAAAGCATGCAA 58.660 36.000 21.98 0.00 0.00 4.08
2541 3224 6.817641 CCTAAATCCATACAAAAGCATGCAAA 59.182 34.615 21.98 0.00 0.00 3.68
2542 3225 7.333921 CCTAAATCCATACAAAAGCATGCAAAA 59.666 33.333 21.98 0.00 0.00 2.44
2543 3226 6.730960 AATCCATACAAAAGCATGCAAAAG 57.269 33.333 21.98 9.51 0.00 2.27
2544 3227 5.465532 TCCATACAAAAGCATGCAAAAGA 57.534 34.783 21.98 0.13 0.00 2.52
2545 3228 5.851720 TCCATACAAAAGCATGCAAAAGAA 58.148 33.333 21.98 0.99 0.00 2.52
2546 3229 6.286758 TCCATACAAAAGCATGCAAAAGAAA 58.713 32.000 21.98 0.00 0.00 2.52
2547 3230 6.935771 TCCATACAAAAGCATGCAAAAGAAAT 59.064 30.769 21.98 2.00 0.00 2.17
2548 3231 7.118101 TCCATACAAAAGCATGCAAAAGAAATC 59.882 33.333 21.98 0.00 0.00 2.17
2549 3232 7.095144 CCATACAAAAGCATGCAAAAGAAATCA 60.095 33.333 21.98 0.00 0.00 2.57
2550 3233 6.870971 ACAAAAGCATGCAAAAGAAATCAT 57.129 29.167 21.98 0.00 0.00 2.45
2551 3234 7.966246 ACAAAAGCATGCAAAAGAAATCATA 57.034 28.000 21.98 0.00 0.00 2.15
2552 3235 7.799784 ACAAAAGCATGCAAAAGAAATCATAC 58.200 30.769 21.98 0.00 0.00 2.39
2553 3236 6.636666 AAAGCATGCAAAAGAAATCATACG 57.363 33.333 21.98 0.00 0.00 3.06
2554 3237 5.314923 AGCATGCAAAAGAAATCATACGT 57.685 34.783 21.98 0.00 0.00 3.57
2555 3238 6.435430 AGCATGCAAAAGAAATCATACGTA 57.565 33.333 21.98 0.00 0.00 3.57
2556 3239 7.031226 AGCATGCAAAAGAAATCATACGTAT 57.969 32.000 21.98 1.14 0.00 3.06
2557 3240 7.483307 AGCATGCAAAAGAAATCATACGTATT 58.517 30.769 21.98 0.00 0.00 1.89
2558 3241 8.620416 AGCATGCAAAAGAAATCATACGTATTA 58.380 29.630 21.98 0.00 0.00 0.98
2559 3242 8.682016 GCATGCAAAAGAAATCATACGTATTAC 58.318 33.333 14.21 0.00 0.00 1.89
2560 3243 9.169468 CATGCAAAAGAAATCATACGTATTACC 57.831 33.333 5.03 0.00 0.00 2.85
2561 3244 7.699566 TGCAAAAGAAATCATACGTATTACCC 58.300 34.615 5.03 0.00 0.00 3.69
2562 3245 7.554835 TGCAAAAGAAATCATACGTATTACCCT 59.445 33.333 5.03 0.00 0.00 4.34
2563 3246 9.048446 GCAAAAGAAATCATACGTATTACCCTA 57.952 33.333 5.03 0.00 0.00 3.53
2565 3248 8.828688 AAAGAAATCATACGTATTACCCTAGC 57.171 34.615 5.03 0.00 0.00 3.42
2566 3249 7.778185 AGAAATCATACGTATTACCCTAGCT 57.222 36.000 5.03 0.00 0.00 3.32
2567 3250 8.874744 AGAAATCATACGTATTACCCTAGCTA 57.125 34.615 5.03 0.00 0.00 3.32
2568 3251 9.305555 AGAAATCATACGTATTACCCTAGCTAA 57.694 33.333 5.03 0.00 0.00 3.09
2571 3254 9.476928 AATCATACGTATTACCCTAGCTAATCT 57.523 33.333 5.03 0.00 0.00 2.40
2572 3255 8.874744 TCATACGTATTACCCTAGCTAATCTT 57.125 34.615 5.03 0.00 0.00 2.40
2573 3256 8.954350 TCATACGTATTACCCTAGCTAATCTTC 58.046 37.037 5.03 0.00 0.00 2.87
2574 3257 6.251655 ACGTATTACCCTAGCTAATCTTCG 57.748 41.667 0.00 0.00 0.00 3.79
2575 3258 5.767168 ACGTATTACCCTAGCTAATCTTCGT 59.233 40.000 0.00 0.00 0.00 3.85
2576 3259 6.072783 ACGTATTACCCTAGCTAATCTTCGTC 60.073 42.308 0.00 0.00 0.00 4.20
2577 3260 4.825546 TTACCCTAGCTAATCTTCGTCG 57.174 45.455 0.00 0.00 0.00 5.12
2578 3261 2.652590 ACCCTAGCTAATCTTCGTCGT 58.347 47.619 0.00 0.00 0.00 4.34
2579 3262 3.022406 ACCCTAGCTAATCTTCGTCGTT 58.978 45.455 0.00 0.00 0.00 3.85
2580 3263 4.202441 ACCCTAGCTAATCTTCGTCGTTA 58.798 43.478 0.00 0.00 0.00 3.18
2581 3264 4.275443 ACCCTAGCTAATCTTCGTCGTTAG 59.725 45.833 0.00 0.00 0.00 2.34
2582 3265 4.514441 CCCTAGCTAATCTTCGTCGTTAGA 59.486 45.833 0.00 4.01 0.00 2.10
2583 3266 5.334260 CCCTAGCTAATCTTCGTCGTTAGAG 60.334 48.000 0.00 0.00 0.00 2.43
2584 3267 5.466058 CCTAGCTAATCTTCGTCGTTAGAGA 59.534 44.000 0.00 0.29 0.00 3.10
2585 3268 6.148150 CCTAGCTAATCTTCGTCGTTAGAGAT 59.852 42.308 0.00 2.29 0.00 2.75
2586 3269 5.753744 AGCTAATCTTCGTCGTTAGAGATG 58.246 41.667 4.93 0.73 0.00 2.90
2587 3270 5.297278 AGCTAATCTTCGTCGTTAGAGATGT 59.703 40.000 4.93 0.76 0.00 3.06
2588 3271 5.622041 GCTAATCTTCGTCGTTAGAGATGTC 59.378 44.000 4.93 0.00 0.00 3.06
2589 3272 4.555348 ATCTTCGTCGTTAGAGATGTCC 57.445 45.455 0.00 0.00 0.00 4.02
2590 3273 3.340928 TCTTCGTCGTTAGAGATGTCCA 58.659 45.455 0.00 0.00 0.00 4.02
2591 3274 3.126514 TCTTCGTCGTTAGAGATGTCCAC 59.873 47.826 0.00 0.00 0.00 4.02
2592 3275 1.395954 TCGTCGTTAGAGATGTCCACG 59.604 52.381 5.98 5.98 33.15 4.94
2593 3276 1.395954 CGTCGTTAGAGATGTCCACGA 59.604 52.381 9.97 9.97 36.83 4.35
2594 3277 2.783333 GTCGTTAGAGATGTCCACGAC 58.217 52.381 21.93 21.93 45.48 4.34
2595 3278 2.429478 TCGTTAGAGATGTCCACGACA 58.571 47.619 9.97 0.00 46.90 4.35
2602 3285 2.048597 TGTCCACGACATCGGTGC 60.049 61.111 6.21 0.00 44.95 5.01
2603 3286 2.813908 GTCCACGACATCGGTGCC 60.814 66.667 6.21 0.00 44.95 5.01
2604 3287 4.429212 TCCACGACATCGGTGCCG 62.429 66.667 1.77 1.77 44.95 5.69
2628 3311 4.446413 GGGTGGACGGGTGCGTAG 62.446 72.222 0.00 0.00 0.00 3.51
2629 3312 4.446413 GGTGGACGGGTGCGTAGG 62.446 72.222 0.00 0.00 0.00 3.18
2630 3313 3.376078 GTGGACGGGTGCGTAGGA 61.376 66.667 0.00 0.00 0.00 2.94
2631 3314 3.066190 TGGACGGGTGCGTAGGAG 61.066 66.667 0.00 0.00 0.00 3.69
2632 3315 3.834799 GGACGGGTGCGTAGGAGG 61.835 72.222 0.00 0.00 0.00 4.30
2633 3316 3.834799 GACGGGTGCGTAGGAGGG 61.835 72.222 0.00 0.00 0.00 4.30
2636 3319 3.851128 GGGTGCGTAGGAGGGCTC 61.851 72.222 0.00 0.00 0.00 4.70
2650 3333 4.851214 GCTCCGGCTCCTCCTCCT 62.851 72.222 0.00 0.00 35.22 3.69
2651 3334 2.520741 CTCCGGCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
2652 3335 3.024356 TCCGGCTCCTCCTCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
2653 3336 2.042435 CCGGCTCCTCCTCCTCTT 60.042 66.667 0.00 0.00 0.00 2.85
2654 3337 2.430610 CCGGCTCCTCCTCCTCTTG 61.431 68.421 0.00 0.00 0.00 3.02
2655 3338 2.907236 GGCTCCTCCTCCTCTTGC 59.093 66.667 0.00 0.00 0.00 4.01
2656 3339 1.688884 GGCTCCTCCTCCTCTTGCT 60.689 63.158 0.00 0.00 0.00 3.91
2657 3340 1.685355 GGCTCCTCCTCCTCTTGCTC 61.685 65.000 0.00 0.00 0.00 4.26
2658 3341 2.015227 GCTCCTCCTCCTCTTGCTCG 62.015 65.000 0.00 0.00 0.00 5.03
2659 3342 0.395036 CTCCTCCTCCTCTTGCTCGA 60.395 60.000 0.00 0.00 0.00 4.04
2660 3343 0.681564 TCCTCCTCCTCTTGCTCGAC 60.682 60.000 0.00 0.00 0.00 4.20
2661 3344 1.671901 CCTCCTCCTCTTGCTCGACC 61.672 65.000 0.00 0.00 0.00 4.79
2662 3345 0.682855 CTCCTCCTCTTGCTCGACCT 60.683 60.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.648467 GAGGCAGATGGTTTCCGCAC 61.648 60.000 0.00 0.00 0.00 5.34
39 40 5.108385 ACTTTTGAATTGTTACGAGGCAG 57.892 39.130 0.00 0.00 0.00 4.85
162 280 3.031013 CCCCTTTAATTTGGCCCTACTG 58.969 50.000 0.00 0.00 0.00 2.74
163 281 2.930405 TCCCCTTTAATTTGGCCCTACT 59.070 45.455 0.00 0.00 0.00 2.57
164 282 3.296854 CTCCCCTTTAATTTGGCCCTAC 58.703 50.000 0.00 0.00 0.00 3.18
165 283 2.930405 ACTCCCCTTTAATTTGGCCCTA 59.070 45.455 0.00 0.00 0.00 3.53
167 285 2.247699 ACTCCCCTTTAATTTGGCCC 57.752 50.000 0.00 0.00 0.00 5.80
168 286 2.693591 GCTACTCCCCTTTAATTTGGCC 59.306 50.000 0.00 0.00 0.00 5.36
200 320 9.869757 TTGATCAACGTTGGTATATATATCTGG 57.130 33.333 27.02 0.00 0.00 3.86
208 328 6.924060 GCTAGAGTTGATCAACGTTGGTATAT 59.076 38.462 28.18 13.75 45.50 0.86
209 329 6.127563 TGCTAGAGTTGATCAACGTTGGTATA 60.128 38.462 28.18 13.90 45.50 1.47
414 605 3.641986 GTTCGAACCCACGCGCAA 61.642 61.111 17.68 0.00 0.00 4.85
480 995 4.101585 TGTTTTGGGGAAAATACATGTGCA 59.898 37.500 9.11 0.00 0.00 4.57
481 996 4.636249 TGTTTTGGGGAAAATACATGTGC 58.364 39.130 9.11 0.00 0.00 4.57
494 1009 7.784633 AAAATCGCATTTATATGTTTTGGGG 57.215 32.000 0.00 0.00 34.12 4.96
545 1063 1.545841 ACTCTGGACATGTCTGCGTA 58.454 50.000 24.50 6.32 0.00 4.42
546 1064 1.474478 CTACTCTGGACATGTCTGCGT 59.526 52.381 24.50 19.01 0.00 5.24
547 1065 1.800655 GCTACTCTGGACATGTCTGCG 60.801 57.143 24.50 14.82 0.00 5.18
548 1066 1.205655 TGCTACTCTGGACATGTCTGC 59.794 52.381 24.50 16.20 0.00 4.26
549 1067 3.455327 CATGCTACTCTGGACATGTCTG 58.545 50.000 24.50 17.20 36.11 3.51
590 1108 4.451557 CGAACAACGGTACACTGAAATTC 58.548 43.478 0.00 0.00 38.46 2.17
619 1148 5.011329 ACTGTACTGGTATGACTCGGAAAAA 59.989 40.000 4.66 0.00 0.00 1.94
624 1153 2.479730 GCACTGTACTGGTATGACTCGG 60.480 54.545 4.66 0.00 0.00 4.63
625 1154 2.423892 AGCACTGTACTGGTATGACTCG 59.576 50.000 4.66 0.00 0.00 4.18
627 1156 4.090090 AGAAGCACTGTACTGGTATGACT 58.910 43.478 4.66 0.00 0.00 3.41
629 1158 5.127194 CCTTAGAAGCACTGTACTGGTATGA 59.873 44.000 4.66 0.00 0.00 2.15
642 1200 2.200373 TTCCCTTGCCTTAGAAGCAC 57.800 50.000 0.00 0.00 40.69 4.40
736 1296 0.094730 CGACGAAGAATTTGGGACGC 59.905 55.000 0.00 0.00 32.29 5.19
752 1312 7.321509 GCTTTTAAAAATGAGAGTTCAGTCGAC 59.678 37.037 7.70 7.70 36.61 4.20
773 1333 6.166279 TCAGTCGATGAACTCTATTGCTTTT 58.834 36.000 0.00 0.00 34.02 2.27
811 1421 0.321298 TAAAGTGCTTCCGTGCCCTC 60.321 55.000 0.00 0.00 0.00 4.30
815 1425 0.733150 GGGATAAAGTGCTTCCGTGC 59.267 55.000 0.00 0.00 0.00 5.34
848 1458 2.801111 ACTTTCTCGCGTCTTTCTTTCC 59.199 45.455 5.77 0.00 0.00 3.13
956 1577 1.580845 CGCTGTGGAGGCTTTGAAGG 61.581 60.000 0.00 0.00 0.00 3.46
987 1612 1.229820 TGGCATGGAGGGTGGTAGT 60.230 57.895 0.00 0.00 0.00 2.73
988 1613 1.224592 GTGGCATGGAGGGTGGTAG 59.775 63.158 0.00 0.00 0.00 3.18
989 1614 2.305607 GGTGGCATGGAGGGTGGTA 61.306 63.158 0.00 0.00 0.00 3.25
1015 1640 1.203075 GGTCGGGATGTAGGAGAGGAT 60.203 57.143 0.00 0.00 0.00 3.24
1419 2047 4.816984 TCCTCGTCCTCCTCCGCC 62.817 72.222 0.00 0.00 0.00 6.13
1420 2048 3.519930 GTCCTCGTCCTCCTCCGC 61.520 72.222 0.00 0.00 0.00 5.54
1425 2053 2.114051 GTCCTCGTCCTCGTCCTCC 61.114 68.421 0.00 0.00 38.33 4.30
1431 2059 2.278206 CGCATGTCCTCGTCCTCG 60.278 66.667 0.00 0.00 38.55 4.63
1705 2354 8.803235 CCAAATATCTACATACACCTGCTAGTA 58.197 37.037 0.00 0.00 0.00 1.82
1706 2355 7.671302 CCAAATATCTACATACACCTGCTAGT 58.329 38.462 0.00 0.00 0.00 2.57
1707 2356 6.591834 GCCAAATATCTACATACACCTGCTAG 59.408 42.308 0.00 0.00 0.00 3.42
1883 2532 2.229784 CCTTGTGGTGATTCTTCCAAGC 59.770 50.000 0.00 0.00 35.38 4.01
1978 2627 0.721718 GCCGGATTCAACTCAACTCG 59.278 55.000 5.05 0.00 0.00 4.18
2086 2739 1.363744 GGGACTCAACTCTTGATGCG 58.636 55.000 0.00 0.00 39.30 4.73
2090 2743 3.181443 GGAAAAGGGGACTCAACTCTTGA 60.181 47.826 0.00 0.00 42.68 3.02
2103 2765 1.213430 TGGTAATAGCGGGAAAAGGGG 59.787 52.381 0.00 0.00 0.00 4.79
2104 2766 2.721425 TGGTAATAGCGGGAAAAGGG 57.279 50.000 0.00 0.00 0.00 3.95
2105 2767 3.243401 GCAATGGTAATAGCGGGAAAAGG 60.243 47.826 0.00 0.00 0.00 3.11
2107 2769 3.129638 GTGCAATGGTAATAGCGGGAAAA 59.870 43.478 0.00 0.00 0.00 2.29
2108 2770 2.685897 GTGCAATGGTAATAGCGGGAAA 59.314 45.455 0.00 0.00 0.00 3.13
2109 2771 2.092646 AGTGCAATGGTAATAGCGGGAA 60.093 45.455 0.00 0.00 0.00 3.97
2113 2775 3.544048 CGTGAAGTGCAATGGTAATAGCG 60.544 47.826 0.00 0.00 0.00 4.26
2114 2776 3.621268 TCGTGAAGTGCAATGGTAATAGC 59.379 43.478 0.00 0.00 0.00 2.97
2115 2777 5.741425 CATCGTGAAGTGCAATGGTAATAG 58.259 41.667 0.00 0.00 0.00 1.73
2116 2778 4.035091 GCATCGTGAAGTGCAATGGTAATA 59.965 41.667 0.00 0.00 40.94 0.98
2117 2779 3.181497 GCATCGTGAAGTGCAATGGTAAT 60.181 43.478 0.00 0.00 40.94 1.89
2118 2780 2.161410 GCATCGTGAAGTGCAATGGTAA 59.839 45.455 0.00 0.00 40.94 2.85
2119 2781 1.737236 GCATCGTGAAGTGCAATGGTA 59.263 47.619 0.00 0.00 40.94 3.25
2120 2782 0.523072 GCATCGTGAAGTGCAATGGT 59.477 50.000 0.00 0.00 40.94 3.55
2184 2867 6.922247 ATCTCTATGCACAATCAAAGACTG 57.078 37.500 0.00 0.00 0.00 3.51
2185 2868 6.257411 CGAATCTCTATGCACAATCAAAGACT 59.743 38.462 0.00 0.00 0.00 3.24
2186 2869 6.036517 ACGAATCTCTATGCACAATCAAAGAC 59.963 38.462 0.00 0.00 0.00 3.01
2187 2870 6.036408 CACGAATCTCTATGCACAATCAAAGA 59.964 38.462 0.00 0.00 0.00 2.52
2188 2871 6.190264 CACGAATCTCTATGCACAATCAAAG 58.810 40.000 0.00 0.00 0.00 2.77
2189 2872 5.447683 GCACGAATCTCTATGCACAATCAAA 60.448 40.000 0.00 0.00 38.00 2.69
2190 2873 4.034394 GCACGAATCTCTATGCACAATCAA 59.966 41.667 0.00 0.00 38.00 2.57
2191 2874 3.557185 GCACGAATCTCTATGCACAATCA 59.443 43.478 0.00 0.00 38.00 2.57
2192 2875 3.557185 TGCACGAATCTCTATGCACAATC 59.443 43.478 0.00 0.00 42.92 2.67
2193 2876 3.534554 TGCACGAATCTCTATGCACAAT 58.465 40.909 0.00 0.00 42.92 2.71
2194 2877 2.971307 TGCACGAATCTCTATGCACAA 58.029 42.857 0.00 0.00 42.92 3.33
2195 2878 2.671130 TGCACGAATCTCTATGCACA 57.329 45.000 0.00 0.00 42.92 4.57
2258 2941 9.141400 GATTTAACGAAGTCTAAGTCAAGTGAT 57.859 33.333 0.00 0.00 45.00 3.06
2259 2942 8.358148 AGATTTAACGAAGTCTAAGTCAAGTGA 58.642 33.333 0.00 0.00 45.00 3.41
2260 2943 8.522178 AGATTTAACGAAGTCTAAGTCAAGTG 57.478 34.615 0.00 0.00 45.00 3.16
2261 2944 8.358148 TGAGATTTAACGAAGTCTAAGTCAAGT 58.642 33.333 0.00 0.00 45.00 3.16
2262 2945 8.744008 TGAGATTTAACGAAGTCTAAGTCAAG 57.256 34.615 0.00 0.00 45.00 3.02
2263 2946 8.358148 ACTGAGATTTAACGAAGTCTAAGTCAA 58.642 33.333 0.00 0.00 45.00 3.18
2264 2947 7.883217 ACTGAGATTTAACGAAGTCTAAGTCA 58.117 34.615 0.00 0.00 45.00 3.41
2265 2948 8.384526 GACTGAGATTTAACGAAGTCTAAGTC 57.615 38.462 10.33 10.33 45.52 3.01
2266 2949 7.883217 TGACTGAGATTTAACGAAGTCTAAGT 58.117 34.615 1.01 1.01 45.00 2.24
2267 2950 8.640291 GTTGACTGAGATTTAACGAAGTCTAAG 58.360 37.037 0.00 0.00 45.00 2.18
2268 2951 8.358148 AGTTGACTGAGATTTAACGAAGTCTAA 58.642 33.333 0.00 0.00 45.00 2.10
2269 2952 7.808381 CAGTTGACTGAGATTTAACGAAGTCTA 59.192 37.037 5.19 0.00 44.12 2.59
2270 2953 6.642950 CAGTTGACTGAGATTTAACGAAGTCT 59.357 38.462 5.19 0.00 44.12 3.24
2271 2954 6.812312 CAGTTGACTGAGATTTAACGAAGTC 58.188 40.000 5.19 0.00 44.12 3.01
2272 2955 6.771188 CAGTTGACTGAGATTTAACGAAGT 57.229 37.500 5.19 0.00 46.20 3.01
2286 2969 1.895798 TGGCTAGGTCTCAGTTGACTG 59.104 52.381 4.77 4.77 45.08 3.51
2287 2970 1.896465 GTGGCTAGGTCTCAGTTGACT 59.104 52.381 0.00 0.00 37.16 3.41
2288 2971 1.618837 TGTGGCTAGGTCTCAGTTGAC 59.381 52.381 0.00 0.00 36.31 3.18
2289 2972 1.618837 GTGTGGCTAGGTCTCAGTTGA 59.381 52.381 0.00 0.00 0.00 3.18
2290 2973 1.344438 TGTGTGGCTAGGTCTCAGTTG 59.656 52.381 0.00 0.00 0.00 3.16
2291 2974 1.344763 GTGTGTGGCTAGGTCTCAGTT 59.655 52.381 0.00 0.00 0.00 3.16
2292 2975 0.969894 GTGTGTGGCTAGGTCTCAGT 59.030 55.000 0.00 0.00 0.00 3.41
2293 2976 1.261480 AGTGTGTGGCTAGGTCTCAG 58.739 55.000 0.00 0.00 0.00 3.35
2294 2977 1.717032 AAGTGTGTGGCTAGGTCTCA 58.283 50.000 0.00 0.00 0.00 3.27
2295 2978 3.090037 TCTAAGTGTGTGGCTAGGTCTC 58.910 50.000 0.00 0.00 0.00 3.36
2296 2979 3.170991 TCTAAGTGTGTGGCTAGGTCT 57.829 47.619 0.00 0.00 0.00 3.85
2297 2980 5.793030 ATATCTAAGTGTGTGGCTAGGTC 57.207 43.478 0.00 0.00 0.00 3.85
2298 2981 6.070194 ACAAATATCTAAGTGTGTGGCTAGGT 60.070 38.462 0.00 0.00 0.00 3.08
2299 2982 6.258727 CACAAATATCTAAGTGTGTGGCTAGG 59.741 42.308 0.00 0.00 37.25 3.02
2300 2983 7.239166 CACAAATATCTAAGTGTGTGGCTAG 57.761 40.000 0.00 0.00 37.25 3.42
2307 2990 6.758886 GGAGAGGACACAAATATCTAAGTGTG 59.241 42.308 1.40 1.28 44.48 3.82
2308 2991 6.405953 CGGAGAGGACACAAATATCTAAGTGT 60.406 42.308 0.00 0.00 46.85 3.55
2309 2992 5.980116 CGGAGAGGACACAAATATCTAAGTG 59.020 44.000 0.00 0.00 37.95 3.16
2310 2993 5.069251 CCGGAGAGGACACAAATATCTAAGT 59.931 44.000 0.00 0.00 45.00 2.24
2311 2994 5.533482 CCGGAGAGGACACAAATATCTAAG 58.467 45.833 0.00 0.00 45.00 2.18
2312 2995 4.202223 GCCGGAGAGGACACAAATATCTAA 60.202 45.833 5.05 0.00 45.00 2.10
2313 2996 3.321111 GCCGGAGAGGACACAAATATCTA 59.679 47.826 5.05 0.00 45.00 1.98
2314 2997 2.103263 GCCGGAGAGGACACAAATATCT 59.897 50.000 5.05 0.00 45.00 1.98
2315 2998 2.103263 AGCCGGAGAGGACACAAATATC 59.897 50.000 5.05 0.00 45.00 1.63
2316 2999 2.103263 GAGCCGGAGAGGACACAAATAT 59.897 50.000 5.05 0.00 45.00 1.28
2317 3000 1.480954 GAGCCGGAGAGGACACAAATA 59.519 52.381 5.05 0.00 45.00 1.40
2318 3001 0.250513 GAGCCGGAGAGGACACAAAT 59.749 55.000 5.05 0.00 45.00 2.32
2319 3002 1.671742 GAGCCGGAGAGGACACAAA 59.328 57.895 5.05 0.00 45.00 2.83
2320 3003 2.283529 GGAGCCGGAGAGGACACAA 61.284 63.158 5.05 0.00 45.00 3.33
2321 3004 2.680352 GGAGCCGGAGAGGACACA 60.680 66.667 5.05 0.00 45.00 3.72
2322 3005 3.462678 GGGAGCCGGAGAGGACAC 61.463 72.222 5.05 0.00 45.00 3.67
2323 3006 4.779733 GGGGAGCCGGAGAGGACA 62.780 72.222 5.05 0.00 45.00 4.02
2342 3025 0.471617 CAATGCTCCTAGTCTGGGGG 59.528 60.000 1.86 0.00 0.00 5.40
2343 3026 0.179034 GCAATGCTCCTAGTCTGGGG 60.179 60.000 1.86 0.00 0.00 4.96
2344 3027 0.543277 TGCAATGCTCCTAGTCTGGG 59.457 55.000 6.82 0.00 0.00 4.45
2345 3028 1.950828 CTGCAATGCTCCTAGTCTGG 58.049 55.000 6.82 0.00 0.00 3.86
2346 3029 1.297664 GCTGCAATGCTCCTAGTCTG 58.702 55.000 6.82 0.00 0.00 3.51
2347 3030 0.907486 TGCTGCAATGCTCCTAGTCT 59.093 50.000 6.82 0.00 0.00 3.24
2348 3031 1.742761 TTGCTGCAATGCTCCTAGTC 58.257 50.000 11.69 0.00 0.00 2.59
2349 3032 2.089980 CTTTGCTGCAATGCTCCTAGT 58.910 47.619 16.77 0.00 0.00 2.57
2350 3033 2.355132 CTCTTTGCTGCAATGCTCCTAG 59.645 50.000 16.77 8.67 0.00 3.02
2351 3034 2.362736 CTCTTTGCTGCAATGCTCCTA 58.637 47.619 16.77 0.00 0.00 2.94
2352 3035 1.174783 CTCTTTGCTGCAATGCTCCT 58.825 50.000 16.77 0.00 0.00 3.69
2353 3036 0.458025 GCTCTTTGCTGCAATGCTCC 60.458 55.000 16.77 6.43 38.95 4.70
2354 3037 3.031660 GCTCTTTGCTGCAATGCTC 57.968 52.632 16.77 9.33 38.95 4.26
2364 3047 4.384940 CTCTTATTCCCCTAGCTCTTTGC 58.615 47.826 0.00 0.00 43.29 3.68
2365 3048 4.141620 TGCTCTTATTCCCCTAGCTCTTTG 60.142 45.833 0.00 0.00 34.28 2.77
2366 3049 4.040755 TGCTCTTATTCCCCTAGCTCTTT 58.959 43.478 0.00 0.00 34.28 2.52
2367 3050 3.658725 TGCTCTTATTCCCCTAGCTCTT 58.341 45.455 0.00 0.00 34.28 2.85
2368 3051 3.336509 TGCTCTTATTCCCCTAGCTCT 57.663 47.619 0.00 0.00 34.28 4.09
2369 3052 3.837731 AGATGCTCTTATTCCCCTAGCTC 59.162 47.826 0.00 0.00 34.28 4.09
2370 3053 3.582208 CAGATGCTCTTATTCCCCTAGCT 59.418 47.826 0.00 0.00 34.28 3.32
2371 3054 3.326297 ACAGATGCTCTTATTCCCCTAGC 59.674 47.826 0.00 0.00 0.00 3.42
2372 3055 4.590647 TGACAGATGCTCTTATTCCCCTAG 59.409 45.833 0.00 0.00 0.00 3.02
2373 3056 4.556697 TGACAGATGCTCTTATTCCCCTA 58.443 43.478 0.00 0.00 0.00 3.53
2374 3057 3.387962 TGACAGATGCTCTTATTCCCCT 58.612 45.455 0.00 0.00 0.00 4.79
2375 3058 3.737850 CTGACAGATGCTCTTATTCCCC 58.262 50.000 0.00 0.00 0.00 4.81
2376 3059 3.137533 GCTGACAGATGCTCTTATTCCC 58.862 50.000 6.65 0.00 0.00 3.97
2377 3060 2.799412 CGCTGACAGATGCTCTTATTCC 59.201 50.000 6.65 0.00 0.00 3.01
2378 3061 3.711086 TCGCTGACAGATGCTCTTATTC 58.289 45.455 6.65 0.00 0.00 1.75
2379 3062 3.382865 TCTCGCTGACAGATGCTCTTATT 59.617 43.478 6.65 0.00 0.00 1.40
2380 3063 2.954989 TCTCGCTGACAGATGCTCTTAT 59.045 45.455 6.65 0.00 0.00 1.73
2381 3064 2.098280 GTCTCGCTGACAGATGCTCTTA 59.902 50.000 6.65 0.00 44.73 2.10
2382 3065 1.135141 GTCTCGCTGACAGATGCTCTT 60.135 52.381 6.65 0.00 44.73 2.85
2383 3066 0.455410 GTCTCGCTGACAGATGCTCT 59.545 55.000 6.65 0.00 44.73 4.09
2384 3067 2.956469 GTCTCGCTGACAGATGCTC 58.044 57.895 6.65 0.00 44.73 4.26
2392 3075 2.525055 GATCTGTCAAGTCTCGCTGAC 58.475 52.381 1.00 1.00 45.67 3.51
2393 3076 1.474478 GGATCTGTCAAGTCTCGCTGA 59.526 52.381 0.00 0.00 0.00 4.26
2394 3077 1.796982 CGGATCTGTCAAGTCTCGCTG 60.797 57.143 0.00 0.00 0.00 5.18
2395 3078 0.453793 CGGATCTGTCAAGTCTCGCT 59.546 55.000 0.00 0.00 0.00 4.93
2396 3079 0.526524 CCGGATCTGTCAAGTCTCGC 60.527 60.000 0.00 0.00 0.00 5.03
2397 3080 0.811915 ACCGGATCTGTCAAGTCTCG 59.188 55.000 9.46 0.00 0.00 4.04
2398 3081 1.135333 GGACCGGATCTGTCAAGTCTC 59.865 57.143 9.46 0.00 34.36 3.36
2399 3082 1.187087 GGACCGGATCTGTCAAGTCT 58.813 55.000 9.46 0.00 34.36 3.24
2400 3083 0.175989 GGGACCGGATCTGTCAAGTC 59.824 60.000 9.46 8.58 34.36 3.01
2401 3084 0.252284 AGGGACCGGATCTGTCAAGT 60.252 55.000 9.46 0.45 34.36 3.16
2402 3085 0.905357 AAGGGACCGGATCTGTCAAG 59.095 55.000 9.46 0.00 34.36 3.02
2403 3086 2.241281 TAAGGGACCGGATCTGTCAA 57.759 50.000 9.46 0.00 34.36 3.18
2404 3087 2.235402 GTTTAAGGGACCGGATCTGTCA 59.765 50.000 9.46 0.00 34.36 3.58
2405 3088 2.737679 CGTTTAAGGGACCGGATCTGTC 60.738 54.545 9.46 4.23 0.00 3.51
2406 3089 1.206371 CGTTTAAGGGACCGGATCTGT 59.794 52.381 9.46 0.00 0.00 3.41
2407 3090 1.935933 CGTTTAAGGGACCGGATCTG 58.064 55.000 9.46 0.00 0.00 2.90
2408 3091 0.177373 GCGTTTAAGGGACCGGATCT 59.823 55.000 9.46 0.00 0.00 2.75
2409 3092 0.812811 GGCGTTTAAGGGACCGGATC 60.813 60.000 9.46 1.18 0.00 3.36
2410 3093 1.222661 GGCGTTTAAGGGACCGGAT 59.777 57.895 9.46 0.00 0.00 4.18
2411 3094 2.664398 GGCGTTTAAGGGACCGGA 59.336 61.111 9.46 0.00 0.00 5.14
2412 3095 2.437180 GGGCGTTTAAGGGACCGG 60.437 66.667 0.00 0.00 0.00 5.28
2413 3096 2.036571 GTGGGCGTTTAAGGGACCG 61.037 63.158 0.00 0.00 32.35 4.79
2414 3097 2.036571 CGTGGGCGTTTAAGGGACC 61.037 63.158 0.00 0.00 0.00 4.46
2415 3098 2.036571 CCGTGGGCGTTTAAGGGAC 61.037 63.158 0.00 0.00 36.15 4.46
2416 3099 2.215625 TCCGTGGGCGTTTAAGGGA 61.216 57.895 0.00 0.00 36.15 4.20
2417 3100 2.036571 GTCCGTGGGCGTTTAAGGG 61.037 63.158 0.00 0.00 36.15 3.95
2418 3101 1.301874 TGTCCGTGGGCGTTTAAGG 60.302 57.895 0.00 0.00 36.15 2.69
2419 3102 1.864176 GTGTCCGTGGGCGTTTAAG 59.136 57.895 0.00 0.00 36.15 1.85
2420 3103 1.955157 CGTGTCCGTGGGCGTTTAA 60.955 57.895 0.00 0.00 36.15 1.52
2421 3104 2.356075 CGTGTCCGTGGGCGTTTA 60.356 61.111 0.00 0.00 36.15 2.01
2431 3114 3.541831 CGCATCCGAACGTGTCCG 61.542 66.667 0.00 0.00 36.98 4.79
2432 3115 2.431942 ACGCATCCGAACGTGTCC 60.432 61.111 0.00 0.00 41.76 4.02
2433 3116 1.674611 CTGACGCATCCGAACGTGTC 61.675 60.000 4.71 6.31 43.71 3.67
2434 3117 1.733041 CTGACGCATCCGAACGTGT 60.733 57.895 4.71 0.00 43.71 4.49
2435 3118 1.674611 GACTGACGCATCCGAACGTG 61.675 60.000 4.71 0.00 43.71 4.49
2436 3119 1.443872 GACTGACGCATCCGAACGT 60.444 57.895 0.00 0.00 46.91 3.99
2437 3120 1.006825 TTGACTGACGCATCCGAACG 61.007 55.000 0.00 0.00 38.29 3.95
2438 3121 0.438830 GTTGACTGACGCATCCGAAC 59.561 55.000 0.00 0.00 38.29 3.95
2439 3122 0.032815 TGTTGACTGACGCATCCGAA 59.967 50.000 0.00 0.00 38.29 4.30
2440 3123 0.666274 GTGTTGACTGACGCATCCGA 60.666 55.000 0.00 0.00 38.29 4.55
2441 3124 0.667487 AGTGTTGACTGACGCATCCG 60.667 55.000 0.00 0.00 41.14 4.18
2442 3125 3.217242 AGTGTTGACTGACGCATCC 57.783 52.632 0.00 0.00 32.56 3.51
2453 3136 1.543208 GGCATGACTGGTCAGTGTTGA 60.543 52.381 8.49 0.00 43.61 3.18
2454 3137 0.877071 GGCATGACTGGTCAGTGTTG 59.123 55.000 8.49 6.88 43.61 3.33
2455 3138 0.767375 AGGCATGACTGGTCAGTGTT 59.233 50.000 0.00 0.00 43.61 3.32
2456 3139 0.322975 GAGGCATGACTGGTCAGTGT 59.677 55.000 5.31 0.00 43.61 3.55
2457 3140 0.322648 TGAGGCATGACTGGTCAGTG 59.677 55.000 5.31 8.54 43.61 3.66
2458 3141 1.059098 TTGAGGCATGACTGGTCAGT 58.941 50.000 5.31 2.94 43.61 3.41
2459 3142 2.189594 TTTGAGGCATGACTGGTCAG 57.810 50.000 5.31 0.00 43.61 3.51
2460 3143 2.885135 ATTTGAGGCATGACTGGTCA 57.115 45.000 5.31 5.87 44.59 4.02
2461 3144 3.378427 GGTAATTTGAGGCATGACTGGTC 59.622 47.826 5.31 0.00 0.00 4.02
2462 3145 3.010584 AGGTAATTTGAGGCATGACTGGT 59.989 43.478 5.31 0.00 0.00 4.00
2463 3146 3.624777 AGGTAATTTGAGGCATGACTGG 58.375 45.455 5.31 0.00 0.00 4.00
2464 3147 6.769822 AGAATAGGTAATTTGAGGCATGACTG 59.230 38.462 5.31 0.00 0.00 3.51
2465 3148 6.904626 AGAATAGGTAATTTGAGGCATGACT 58.095 36.000 0.00 0.00 0.00 3.41
2466 3149 6.205658 GGAGAATAGGTAATTTGAGGCATGAC 59.794 42.308 0.00 0.00 0.00 3.06
2467 3150 6.126507 TGGAGAATAGGTAATTTGAGGCATGA 60.127 38.462 0.00 0.00 0.00 3.07
2468 3151 6.064060 TGGAGAATAGGTAATTTGAGGCATG 58.936 40.000 0.00 0.00 0.00 4.06
2469 3152 6.266131 TGGAGAATAGGTAATTTGAGGCAT 57.734 37.500 0.00 0.00 0.00 4.40
2470 3153 5.708736 TGGAGAATAGGTAATTTGAGGCA 57.291 39.130 0.00 0.00 0.00 4.75
2471 3154 6.073003 CGAATGGAGAATAGGTAATTTGAGGC 60.073 42.308 0.00 0.00 0.00 4.70
2472 3155 7.217200 TCGAATGGAGAATAGGTAATTTGAGG 58.783 38.462 0.00 0.00 0.00 3.86
2473 3156 7.928706 ACTCGAATGGAGAATAGGTAATTTGAG 59.071 37.037 0.00 8.30 46.23 3.02
2474 3157 7.792032 ACTCGAATGGAGAATAGGTAATTTGA 58.208 34.615 0.00 0.00 46.23 2.69
2475 3158 7.928706 AGACTCGAATGGAGAATAGGTAATTTG 59.071 37.037 0.00 0.00 46.23 2.32
2476 3159 8.024145 AGACTCGAATGGAGAATAGGTAATTT 57.976 34.615 0.00 0.00 46.23 1.82
2477 3160 7.507616 AGAGACTCGAATGGAGAATAGGTAATT 59.492 37.037 0.00 0.00 46.23 1.40
2478 3161 7.007723 AGAGACTCGAATGGAGAATAGGTAAT 58.992 38.462 0.00 0.00 46.23 1.89
2479 3162 6.366340 AGAGACTCGAATGGAGAATAGGTAA 58.634 40.000 0.00 0.00 46.23 2.85
2480 3163 5.942961 AGAGACTCGAATGGAGAATAGGTA 58.057 41.667 0.00 0.00 46.23 3.08
2481 3164 4.798882 AGAGACTCGAATGGAGAATAGGT 58.201 43.478 0.00 0.00 46.23 3.08
2482 3165 4.824537 TGAGAGACTCGAATGGAGAATAGG 59.175 45.833 0.00 0.00 46.23 2.57
2483 3166 6.573664 ATGAGAGACTCGAATGGAGAATAG 57.426 41.667 0.00 0.00 46.23 1.73
2484 3167 8.642935 AATATGAGAGACTCGAATGGAGAATA 57.357 34.615 0.00 0.00 46.23 1.75
2485 3168 7.537596 AATATGAGAGACTCGAATGGAGAAT 57.462 36.000 0.00 0.00 46.23 2.40
2486 3169 6.968263 AATATGAGAGACTCGAATGGAGAA 57.032 37.500 0.00 0.00 46.23 2.87
2487 3170 6.547510 TGAAATATGAGAGACTCGAATGGAGA 59.452 38.462 0.00 0.00 46.23 3.71
2489 3172 6.715347 TGAAATATGAGAGACTCGAATGGA 57.285 37.500 0.00 0.00 32.35 3.41
2490 3173 6.201806 GGTTGAAATATGAGAGACTCGAATGG 59.798 42.308 0.00 0.00 32.35 3.16
2491 3174 6.201806 GGGTTGAAATATGAGAGACTCGAATG 59.798 42.308 0.00 0.00 32.35 2.67
2492 3175 6.284459 GGGTTGAAATATGAGAGACTCGAAT 58.716 40.000 0.00 0.00 32.35 3.34
2493 3176 5.395324 GGGGTTGAAATATGAGAGACTCGAA 60.395 44.000 0.00 0.00 32.35 3.71
2494 3177 4.099573 GGGGTTGAAATATGAGAGACTCGA 59.900 45.833 0.00 0.00 32.35 4.04
2495 3178 4.100189 AGGGGTTGAAATATGAGAGACTCG 59.900 45.833 0.00 0.00 32.35 4.18
2496 3179 5.622346 AGGGGTTGAAATATGAGAGACTC 57.378 43.478 0.00 0.00 0.00 3.36
2497 3180 7.510675 TTTAGGGGTTGAAATATGAGAGACT 57.489 36.000 0.00 0.00 0.00 3.24
2498 3181 7.445707 GGATTTAGGGGTTGAAATATGAGAGAC 59.554 40.741 0.00 0.00 0.00 3.36
2499 3182 7.128728 TGGATTTAGGGGTTGAAATATGAGAGA 59.871 37.037 0.00 0.00 0.00 3.10
2500 3183 7.290061 TGGATTTAGGGGTTGAAATATGAGAG 58.710 38.462 0.00 0.00 0.00 3.20
2501 3184 7.219601 TGGATTTAGGGGTTGAAATATGAGA 57.780 36.000 0.00 0.00 0.00 3.27
2502 3185 9.014297 GTATGGATTTAGGGGTTGAAATATGAG 57.986 37.037 0.00 0.00 0.00 2.90
2503 3186 8.506921 TGTATGGATTTAGGGGTTGAAATATGA 58.493 33.333 0.00 0.00 0.00 2.15
2504 3187 8.704849 TGTATGGATTTAGGGGTTGAAATATG 57.295 34.615 0.00 0.00 0.00 1.78
2505 3188 9.722317 TTTGTATGGATTTAGGGGTTGAAATAT 57.278 29.630 0.00 0.00 0.00 1.28
2506 3189 9.548631 TTTTGTATGGATTTAGGGGTTGAAATA 57.451 29.630 0.00 0.00 0.00 1.40
2507 3190 8.442660 TTTTGTATGGATTTAGGGGTTGAAAT 57.557 30.769 0.00 0.00 0.00 2.17
2508 3191 7.526359 GCTTTTGTATGGATTTAGGGGTTGAAA 60.526 37.037 0.00 0.00 0.00 2.69
2509 3192 6.071051 GCTTTTGTATGGATTTAGGGGTTGAA 60.071 38.462 0.00 0.00 0.00 2.69
2510 3193 5.420739 GCTTTTGTATGGATTTAGGGGTTGA 59.579 40.000 0.00 0.00 0.00 3.18
2511 3194 5.186797 TGCTTTTGTATGGATTTAGGGGTTG 59.813 40.000 0.00 0.00 0.00 3.77
2512 3195 5.337788 TGCTTTTGTATGGATTTAGGGGTT 58.662 37.500 0.00 0.00 0.00 4.11
2513 3196 4.941713 TGCTTTTGTATGGATTTAGGGGT 58.058 39.130 0.00 0.00 0.00 4.95
2514 3197 5.739935 GCATGCTTTTGTATGGATTTAGGGG 60.740 44.000 11.37 0.00 41.83 4.79
2515 3198 5.163426 TGCATGCTTTTGTATGGATTTAGGG 60.163 40.000 20.33 0.00 41.83 3.53
2516 3199 5.904941 TGCATGCTTTTGTATGGATTTAGG 58.095 37.500 20.33 0.00 41.83 2.69
2517 3200 7.830940 TTTGCATGCTTTTGTATGGATTTAG 57.169 32.000 20.33 0.00 41.66 1.85
2518 3201 8.093307 TCTTTTGCATGCTTTTGTATGGATTTA 58.907 29.630 20.33 0.00 41.66 1.40
2519 3202 6.935771 TCTTTTGCATGCTTTTGTATGGATTT 59.064 30.769 20.33 0.00 41.66 2.17
2520 3203 6.465948 TCTTTTGCATGCTTTTGTATGGATT 58.534 32.000 20.33 0.00 41.66 3.01
2521 3204 6.040209 TCTTTTGCATGCTTTTGTATGGAT 57.960 33.333 20.33 0.00 41.66 3.41
2522 3205 5.465532 TCTTTTGCATGCTTTTGTATGGA 57.534 34.783 20.33 2.34 41.83 3.41
2523 3206 6.542574 TTTCTTTTGCATGCTTTTGTATGG 57.457 33.333 20.33 0.00 41.83 2.74
2524 3207 7.798801 TGATTTCTTTTGCATGCTTTTGTATG 58.201 30.769 20.33 1.41 43.91 2.39
2525 3208 7.966246 TGATTTCTTTTGCATGCTTTTGTAT 57.034 28.000 20.33 4.43 0.00 2.29
2526 3209 7.966246 ATGATTTCTTTTGCATGCTTTTGTA 57.034 28.000 20.33 0.00 0.00 2.41
2527 3210 6.870971 ATGATTTCTTTTGCATGCTTTTGT 57.129 29.167 20.33 0.00 0.00 2.83
2528 3211 6.951530 CGTATGATTTCTTTTGCATGCTTTTG 59.048 34.615 20.33 7.09 0.00 2.44
2529 3212 6.646240 ACGTATGATTTCTTTTGCATGCTTTT 59.354 30.769 20.33 0.00 0.00 2.27
2530 3213 6.158598 ACGTATGATTTCTTTTGCATGCTTT 58.841 32.000 20.33 0.00 0.00 3.51
2531 3214 5.713025 ACGTATGATTTCTTTTGCATGCTT 58.287 33.333 20.33 0.00 0.00 3.91
2532 3215 5.314923 ACGTATGATTTCTTTTGCATGCT 57.685 34.783 20.33 0.00 0.00 3.79
2533 3216 7.684062 AATACGTATGATTTCTTTTGCATGC 57.316 32.000 11.82 11.82 0.00 4.06
2534 3217 9.169468 GGTAATACGTATGATTTCTTTTGCATG 57.831 33.333 9.24 0.00 0.00 4.06
2535 3218 8.349983 GGGTAATACGTATGATTTCTTTTGCAT 58.650 33.333 9.24 0.00 0.00 3.96
2536 3219 7.554835 AGGGTAATACGTATGATTTCTTTTGCA 59.445 33.333 9.24 0.00 0.00 4.08
2537 3220 7.927048 AGGGTAATACGTATGATTTCTTTTGC 58.073 34.615 9.24 0.00 0.00 3.68
2539 3222 9.269453 GCTAGGGTAATACGTATGATTTCTTTT 57.731 33.333 9.24 0.00 0.00 2.27
2540 3223 8.648693 AGCTAGGGTAATACGTATGATTTCTTT 58.351 33.333 9.24 0.00 0.00 2.52
2541 3224 8.191534 AGCTAGGGTAATACGTATGATTTCTT 57.808 34.615 9.24 0.00 0.00 2.52
2542 3225 7.778185 AGCTAGGGTAATACGTATGATTTCT 57.222 36.000 9.24 6.42 0.00 2.52
2545 3228 9.476928 AGATTAGCTAGGGTAATACGTATGATT 57.523 33.333 9.24 0.00 36.53 2.57
2546 3229 9.476928 AAGATTAGCTAGGGTAATACGTATGAT 57.523 33.333 9.24 0.00 36.53 2.45
2547 3230 8.874744 AAGATTAGCTAGGGTAATACGTATGA 57.125 34.615 9.24 0.00 36.53 2.15
2548 3231 7.909121 CGAAGATTAGCTAGGGTAATACGTATG 59.091 40.741 9.24 0.00 36.53 2.39
2549 3232 7.609532 ACGAAGATTAGCTAGGGTAATACGTAT 59.390 37.037 1.14 1.14 37.87 3.06
2550 3233 6.936900 ACGAAGATTAGCTAGGGTAATACGTA 59.063 38.462 17.33 0.00 37.87 3.57
2551 3234 5.767168 ACGAAGATTAGCTAGGGTAATACGT 59.233 40.000 15.24 15.24 36.53 3.57
2552 3235 6.251655 ACGAAGATTAGCTAGGGTAATACG 57.748 41.667 0.00 14.49 36.53 3.06
2553 3236 6.072783 ACGACGAAGATTAGCTAGGGTAATAC 60.073 42.308 0.00 0.00 36.53 1.89
2554 3237 6.000219 ACGACGAAGATTAGCTAGGGTAATA 59.000 40.000 0.00 0.00 36.53 0.98
2555 3238 4.826183 ACGACGAAGATTAGCTAGGGTAAT 59.174 41.667 0.00 2.27 38.65 1.89
2556 3239 4.202441 ACGACGAAGATTAGCTAGGGTAA 58.798 43.478 0.00 0.00 0.00 2.85
2557 3240 3.813443 ACGACGAAGATTAGCTAGGGTA 58.187 45.455 0.00 0.00 0.00 3.69
2558 3241 2.652590 ACGACGAAGATTAGCTAGGGT 58.347 47.619 0.00 0.00 0.00 4.34
2559 3242 3.712091 AACGACGAAGATTAGCTAGGG 57.288 47.619 0.00 0.00 0.00 3.53
2560 3243 5.466058 TCTCTAACGACGAAGATTAGCTAGG 59.534 44.000 0.00 0.00 0.00 3.02
2561 3244 6.528014 TCTCTAACGACGAAGATTAGCTAG 57.472 41.667 0.00 0.00 0.00 3.42
2562 3245 6.482641 ACATCTCTAACGACGAAGATTAGCTA 59.517 38.462 0.00 0.00 0.00 3.32
2563 3246 5.297278 ACATCTCTAACGACGAAGATTAGCT 59.703 40.000 0.00 0.00 0.00 3.32
2564 3247 5.512473 ACATCTCTAACGACGAAGATTAGC 58.488 41.667 0.00 0.00 0.00 3.09
2565 3248 6.137415 GGACATCTCTAACGACGAAGATTAG 58.863 44.000 0.00 0.00 0.00 1.73
2566 3249 5.587443 TGGACATCTCTAACGACGAAGATTA 59.413 40.000 0.00 0.00 0.00 1.75
2567 3250 4.398358 TGGACATCTCTAACGACGAAGATT 59.602 41.667 0.00 0.00 0.00 2.40
2568 3251 3.945921 TGGACATCTCTAACGACGAAGAT 59.054 43.478 0.00 1.58 0.00 2.40
2569 3252 3.126514 GTGGACATCTCTAACGACGAAGA 59.873 47.826 0.00 3.09 0.00 2.87
2570 3253 3.427243 GTGGACATCTCTAACGACGAAG 58.573 50.000 0.00 0.00 0.00 3.79
2571 3254 2.159612 CGTGGACATCTCTAACGACGAA 60.160 50.000 0.00 0.00 36.82 3.85
2572 3255 1.395954 CGTGGACATCTCTAACGACGA 59.604 52.381 0.00 0.00 36.82 4.20
2573 3256 1.395954 TCGTGGACATCTCTAACGACG 59.604 52.381 0.00 0.00 38.26 5.12
2575 3258 2.429478 TGTCGTGGACATCTCTAACGA 58.571 47.619 0.00 0.00 37.67 3.85
2576 3259 2.913777 TGTCGTGGACATCTCTAACG 57.086 50.000 0.00 0.00 37.67 3.18
2585 3268 2.048597 GCACCGATGTCGTGGACA 60.049 61.111 0.38 0.38 46.90 4.02
2586 3269 2.813908 GGCACCGATGTCGTGGAC 60.814 66.667 1.44 0.00 37.74 4.02
2611 3294 4.446413 CTACGCACCCGTCCACCC 62.446 72.222 0.00 0.00 46.39 4.61
2612 3295 4.446413 CCTACGCACCCGTCCACC 62.446 72.222 0.00 0.00 46.39 4.61
2613 3296 3.352338 CTCCTACGCACCCGTCCAC 62.352 68.421 0.00 0.00 46.39 4.02
2614 3297 3.066190 CTCCTACGCACCCGTCCA 61.066 66.667 0.00 0.00 46.39 4.02
2615 3298 3.834799 CCTCCTACGCACCCGTCC 61.835 72.222 0.00 0.00 46.39 4.79
2616 3299 3.834799 CCCTCCTACGCACCCGTC 61.835 72.222 0.00 0.00 46.39 4.79
2619 3302 3.851128 GAGCCCTCCTACGCACCC 61.851 72.222 0.00 0.00 0.00 4.61
2620 3303 3.851128 GGAGCCCTCCTACGCACC 61.851 72.222 7.08 0.00 46.16 5.01
2633 3316 4.851214 AGGAGGAGGAGCCGGAGC 62.851 72.222 5.05 0.00 43.43 4.70
2634 3317 2.520741 GAGGAGGAGGAGCCGGAG 60.521 72.222 5.05 0.00 43.43 4.63
2635 3318 2.627476 AAGAGGAGGAGGAGCCGGA 61.627 63.158 5.05 0.00 43.43 5.14
2636 3319 2.042435 AAGAGGAGGAGGAGCCGG 60.042 66.667 0.00 0.00 43.43 6.13
2637 3320 3.087666 GCAAGAGGAGGAGGAGCCG 62.088 68.421 0.00 0.00 43.43 5.52
2638 3321 1.685355 GAGCAAGAGGAGGAGGAGCC 61.685 65.000 0.00 0.00 0.00 4.70
2639 3322 1.822615 GAGCAAGAGGAGGAGGAGC 59.177 63.158 0.00 0.00 0.00 4.70
2640 3323 0.395036 TCGAGCAAGAGGAGGAGGAG 60.395 60.000 0.00 0.00 0.00 3.69
2641 3324 0.681564 GTCGAGCAAGAGGAGGAGGA 60.682 60.000 0.00 0.00 0.00 3.71
2642 3325 1.671901 GGTCGAGCAAGAGGAGGAGG 61.672 65.000 10.30 0.00 0.00 4.30
2643 3326 0.682855 AGGTCGAGCAAGAGGAGGAG 60.683 60.000 18.15 0.00 0.00 3.69
2644 3327 1.384583 AGGTCGAGCAAGAGGAGGA 59.615 57.895 18.15 0.00 0.00 3.71
2645 3328 4.026300 AGGTCGAGCAAGAGGAGG 57.974 61.111 18.15 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.