>input_sequence_72430
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------------------------ATGCCACCCTCCGGCATCCTCTCCTACATCCCGACCAGCCTCTCCTCCATCCTCCC
GGTCCGCGGCTGCGGCGCGGCCCCCTTGCCGTCTCCGTCGCCGTCGCCTCCAACTCCACCG---GCGTCCCCGGCCCCGA
GCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGCGAC
GGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGCGACGAGCTGGCCGCCAT
GATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGGGAGCTCTACCGCACCATCATGTCCA
CGGGCGGTGGCGGGGGCCAGAAGGGCTCGTCGGGCGAGGAGGCGGCGGCGGAGGAGGAC---------------GAGGAC
GAGGACATGCGGGAGGCGTTCCGTGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCCGTGCT
GGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTGGACCGCGACGGCGACG
GCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGA---------------
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>chr2D_1_TraesCS2D01G347500
AGAATAAAATGCTGCATTTTTAAGTTGTGCGGAAACCATCTGCCTCGTAACAATTCAAAAGTTAAATTTAATAATT-CAA
AAATACCAAAGAATTTCCCCTCCCCTCCCCGTCTTGCTCTTCTCTTATCTTCCACATATATTAG----------------
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--------------------CCATATTTCAGATTTTTTTCAGTAGGG--CCAAATTAAAGGGGAGTAGCTCTCCTCTTCC
CAGATATAT---------------------------------------------------------------ATACCAAC
GTTGATCAACTCTAGCAAGCTCCATATTTCTACACAGACATTAAATAAAGTGTCATTT------TGTCTCTACTGTTATT
TTAGTATGATCATATGTGAGTTA-TGAAACCATAGTATATATAAAGAAAGATGTAACATTTTTAAC-CAAGAGCTGGTTT
GCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAATTGCGCGTGGGTTCGAACCCCACAGCCAGCA-----
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-------------------------------------------------------------------------------T
TTTTTTGTCTACTTTTGACACGCAAAAAAACACATGCACATGTATTTTCCCCAAAACATATAAATGCGATTTTTG---CA
AATTTCGTGAAATGGGTTCATATACGCAGACATGTCCAGAGTAGCATGTTCCTATACATGGGACACAGAATTTCAG----
-------TGTACCGTTGTTCGTCCTTTTTTTTCCGAGT-----------------------------CATACCAGTACAG
TGCT--TCTAAGGCAAGGGAAAAAACCAGAGTAAATTAAGTAAGACAAAATGACACTTTATTTGGAAGTCAAATCAAGAC
CCGGGAAAATAGAGTGCGTCCCAAATTCTTCGTCGACTGAACTCTCATTTTTAAAAGCAATAGAGTT-------------
-------------------------------------CATCGACTGAACTCTTGACATACGAGGGCACGGAAGCACTTTA
TCCCTTTTACAAGAAAAG------GAAAGAAAGACGCGAGAA---AGTAGTATAAATACAACCCTGGTCCACGGCAAAAG
CTTTGCGCCAACACCACCACCA--AACCTCTCCCCCACCCAACTCAACTCGAGCGACCTTC----AAAGCCTCCACAGCG
AGCAAAGCAACACTACCACCCTCCATGCCACCCTCCGGCATCCTCTCCTACATCCCGACCAGCCTCTCCTCCATCCTCCC
GGTCCGCGGCTGCGGCGCGGCCCCCTTGCCGTCTCCGTCGCCGTCGCCTCCAACTCCACCG---GCGTCCCCGGCCCCGA
GCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGCGAC
GGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGCGACGAGCTGGCCGCCAT
GATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGGGAGCTCTACCGCACCATCATGTCCA
CGGGCGGTGGCGGGGGCCAGAAGGGCTCGTCGGGCGAGGAGGCGGCGGCGGAGGAGGAC---------------GAGGAC
GAGGACATGCGGGAGGCGTTCCGTGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCCGTGCT
GGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTGGACCGCGACGGCGACG
GCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGA------TCGACTGAT
GCTGATGAATGTGCGCTTTGTATGCTTGGTTGGTACTAGCAGGTGTATGTAGATATTTGGCTCGGGCCGGGGGGAATCCG
TGTAACCGCTCCCGAAATTCTTCTCGTTTTTTCTGGTTTGTTTGTTCCTTCGTACGCTTAATCTAAGATGTACTGTAAGA
TTGATGGGCTTGCAGATTAATGGTTTGTACTGCTTGCTGCTCGCAAGAATTGCTTGGAAGAATCACCACAAGGTTTTGTA
CTTTTGTTCGTCGTGTGCATGTAAACACTGTAGCGCATCTCTTGGCGCCAGATTCTGTCAACTCTTCGAGTTGAGTTGAA
TCCGGCGTCTCTGCTTGGTTATTTGCGAACATTCCGGCAGAGTCTCGTTGCTGGCCTGCGTGCTTCGTGGCA----CTGG
ATCTGAAATGTGCAATTGCGCAT-C--------AAGAGTTGAGTCCCCTTTTCCCGCTATTACC----------------
-----ATTGCACTTCACGATGCATGTGACGATGGGCTCAGCGGCTACCTCACACGAATTAGATATTCAGTCTTTGATTGT
GCATAGAGATTCGTGCAAAAAATTCTTTTCAATTTATTCTTCTTCTTACGTATACTATATATCACTTGACTTAGACTTCG
TTAAATCTCAGTCAACTGAGACCTAGCCACACACTTAGATATTTGTGTCCTCTCCGGCTCCCCCCCCCCAGACTAGGAGC
ATTGCAGCAAAGAGCTAGGGGAATAAGAGCATCTGTCAGCGAGACTTGACAGATCCGGTCCCTTAAACGCCCACGGACAC
GTTCGGATGCGTCAGTCAACACTGACCAGTCATGCCTCAAATTACCTATTCTCCATTCGAGTCTCTCATATTTCAACCCC
TAAATCCATACAAAAGCATGCAAAAGAAATCATACGTATTACCCTAGCTAATCTTCGTCGTTAGAGATGTCCACGACATC
GGTGCCGGGCGTCGGGTGGACGGGTGCGTAGGAGGGCTCCGGCTCCTCCTCCTCTTGCTCGACCT
>chr2A_1
AGAATAAAATGCTGCATTTTTTAGTTATGCGGAAACCATATGCCTCATAACAATTCAAAAGTTAAATTTAATAATT-CAG
AAATACCAAAGAATTTCCCCTCCCCTCACCGTCTTGCTCTTCTCTTATCTTCCACATATATACTCCCTCCGTTCGAAAAA
ACTTGTCCCTCAAATGAATGTATCTAGCACTAAGTTAGTGTTAAATACATCCATTTGAGAAACAAGATTGAGACAAGATT
TTCCGAACGGAGGGAGTACACCATATTTCAGAATTTTTTTTCAATAGCACCAAATTAAAGGGGAGTAGCTCTCCTCTTCT
CTTATTTTCCACACACACACACACACACACACACACACACACACACACACACACATATATATATACACATCAATACCAAC
GTTGATCAACTCTAGCAAGCTCCATATTTCTACACAGACATTAAATAAAGTGCCATTTAAATTTTGTCTCTGCTGTTATT
TCAGCATGATCATATGTGAGTT-GTGCAATAATAGTATATTTGACGAAAGATGTAACTTTCTTCAT-CAAGAGCTGGTTT
GCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCGAACCCCACAGCCAGCA-----
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-----------------------------------------------------------------------------ATT
TTTTTTGTCTACTTTTGACACGCAAAAAAAAA-A--CATATGTATTTTTCCCAAAACATATAAATGTGATTTTTTTTTCA
AATTTCGTGAAATGGGTTCATACGT--AGACATGTCCAGAGTAGCATGTTCCTATACTTGGAACACATACTTCCCGCA-A
ACGTATTTGTACCGCTGTTCGTCCTTTATTTTTTGCGAGTCATACCGTTTTTCGATGGGATATTATGCATACCAGTACAA
TGCT--TCTA-GGCAAGGGGAAAAACCCGAGTAAATTAAGTAAGACAAAATGACACTTTATTTGGAAGTCAAATCAAGAC
ACGGGGAAATGGAGTCCGTCCCAAATTCTTCATCGACTGAACTC-CATTTTTTAAAGCAATAGAGTT-------------
-------------------------------------CATCGACTGAACTCTTGACATATAAGGACACGGAAGCACTTTA
TCCCTTTTACAAGAAAAAAAGAAAGAGAGCAATACGCGAGAAAGGAGTAGTATAAATACAACCCTGGTCCACGGCAAAAG
CTTTGCGCCAACACCACCACCACCAAACTCTCTCCCACCCAACTCAACTCGAGCGATCTTCCTTCAAAGCCTCCACAGCG
AGCAAAGCAAC---ACCACCCTCCATGCCACCCTCCGGCCTCCTCTCCTACATCCCGACCAGCTTCTCCTCCATCCTCCC
TGTCCGCGGCTGCGCCGCGCCCCCCTCGCCGTCTCCGTCTCCGTCGCCGGCGCCTCCACCGGCAGCGTCTCCGGCCCCGA
GCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGCGAC
GGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGCGACGAGCTGGCCGCCAT
GATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGCGAGCTCTACCGCACCATCATGTCGA
CGAGCAGCGGCGGGGACCAGAAGGATTCGT------------------CGGACGAGGAA---------------GAGGAC
GAGGACATGCGGGAGGCGTTCCGCGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCCGTGCT
GGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTCGACCGCGACGGCGACG
GCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGATCGACTTCGACTGAT
GCTGATGAATGTGCGCTTTGTATGCTTGGTTGG---TAGCAGGTGTATGTAGATATCTGGCTCGGGCCGGGGCGAATCCG
TGTAACCGCTCCCGAAATTCATCTCGTTTTTTCCGGTTTGTTTGTTCCTTCGTACGCTTAATCTAAGATGTACTGTAAGA
TTGATGGGCTTGCAGATTAATGGTTTGTAC-GCTTGCTGCTCGCAAGAGTTACTTGGAAGAATTACCACAAGG-------
-TTTTGTTCGTCGTGTGCACGTAAACACTGTAGCGCATCTCTTGGCGCCAGATTCTGTCGTT-----GAGTTGAGTTGAA
TCCGGCGTCTCTGCTTGGCTATTTGCGAACATTCCGGCAGAGTCTCGCTGCTGGTCTGCGTGCTTCGTGGCACTGGCTGG
ATCTGAAATGTGCAATTGTGCACCC--------AAGAGTTGAGTTGACCCGCCC--------CC----------------
-----ATTGCACTTCACGATGCATGTGACGATGGGCTCACCGGCTAGCTCGGACGAATTAGATATT--------------
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>chr2B_1
AGAATAGAATGCTGCATTTTTAAGTTATGTGGAAATCATATGCCTCGTAATAATTCAAAAGTTAAATTTAATAATTTCAA
AAATACCAAAGAATTTCCC-TCCCCTCCCCGTATTGCTCTTCTCTTATTTTCCACATATA--------------------
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----------------TACACCATATTTCAGACTTTTTC------------------------AGTAGCTCTCCTCTTTT
CTTATTTTCCAT------------------------------------------ATATATATATATACACGAATAGCAAC
GTTGATCAACTATAGCAAGCCCCATATTTCTACCCAGGCATTAAATAAAGTGTCATTT------TGCCTCTACTGTTATT
-TAGCATGACCATATGTGAGTTTGTGCAATCATAGTATATTTTACGGAACATGTATCTTTGTCACAGCAAGAGCTGGTTT
GCCCGAGTGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCGAACCCCACAGCCAGCATGTTT
TTTTGTTTACCTTTTTTTTACGTTTAAATAGAGCTACAGTGAGAAATTGGCATCGATATGCTGGTTTGCCCGAGTGGTTA
AGGGGGAAGGCTTAAGATCTTCTGCACATAAGTGCGCGTGGGTTCCGAACCCCACAGCCAGCATTTTTTTTGTTTAATAT
TAATATTGACATGCAAAAAAACACACACATGTATTTTTTCCAAAATATGTAAATGCGACTTTTGCCAATTTCGTGAAATG
GGTTCATACGTAGACATGTCCAGAGTAGCATGTTCCTATACATGGAACAGTACTTTGGTTCGAACCCCACAGCCAGCATT
TTTTTTGTTTAATATTGACACGCAAAAAAACACA--CACATGTATTTTTTCCAAAATATGTAAATGCAACTTTTG---CC
AATTTCGTGAAATGGGTTCATACGT--AGACATGTCCAGAGTAGCATGTTCCTATACATGGAACACGTACTTTCAGAACA
ACGTATTCATACCGTTGTTCGTCCTTTATTTTT-GCGAGTCATACCGTTTTTCTGTGGGATATATTACATATTACTAGTA
TTTACATCTA-GGCTAGGGAAACCCCAGTAACAAATTAAGTAAGACAAAATGACGCTTTATTTGGAAGTCAAAT-AAGAC
CCGGGAAAATAGAGTCGGTCCGAAATTCTTCATCGACTGAACTCTTTTTAAATGTTTTTTTTTGCGTGTCAAAAGTTAGA
CAAGAAATATGCTGGCTGTGGGGTCCGAACCCACGCGCATCGACTAAACTCTTGACATACAAGGACACGGAAGCACTTTA
TCCCTTTTACAAGAAAAA------GAAAGAAAGACGCGAGAA---AGTGGTATAAATAGAACCCTGGTCCACGGCAAAAG
CTTTGCGCCACCACCACCACCA--AACTTCTCCCCCACCCAACTCGACTCGAGCGATCTTC----AAAGCCTCCACAGCG
AGCAAAGCAAC---ACCACCCTCCATGCCACCCTCCGGCCTCCTCTCCTACATCCCGACCAGCCTCTCCTCCATCCTCCC
GGTGCGCGGCTGCGCCGCGCCCCCCTCG------------CCGTCGCCTCCAACTCCGCCG---GCGTCCCCGGCCCCGA
GCAAGATGTCGCCCTCGGTGAAGGCGGCGGACCGCGCGGAGCTGGCGCGCGTGTTCGAGCTGTTCGACCGGAACGGCGAC
GGGCGCATCACGCGGGAGGAGCTGGAGGACTCGCTGGGCAAGCTGGGCATCCCCGTGCCGGGGGACGAGCTGGCCGCCAT
GATCGCGCGCATCGACGCCGACGGCGACGGGTGCGTGGACGTGGAGGAGTTCGGCGAGCTCTACCGCACCATTATGTCGA
CGGGCAGCGGCGGGGC---GAAGGGCTCGT------------------CGGGCGAGGAGGCGGAGGCGGAGGAGGACGAC
GAGGACATGCGGGAGGCGTTCCGTGTGTTCGACGCCAACGGCGACGGGTTCATCACGGTGGACGAGCTGAGCGCGGTGCT
GGCGTCGCTGGGGCTGAAGCAGGGCCGGTCGGCCGAGGAGTGCCGCCGCATGATCGGGCAGGTGGACCGGGACGGCGACG
GCCGCGTCGACTTCCACGAGTTCCGCCAGATGATGCGCGGCGGCGGGCTCGCCGCGCTCGCCTGATCGACTACGACTGAT
GCTGATGAATGTGCGCTTTGTATGCTTGGCTGG---TAGCAGGTGTATGTAGATATTTGGCTCGGGCCGGGGGGAATCCG
TGTAACCGCTCCCGAAATTCTTCTCGTTTTTTCTGGTTTGTTTGTTCCTTCGCACGCTTATGCTAAGATG----------
TTGATGGGCTTGCCGATTAATGG-TTGTACTGCTTGCTGCTCGCAAGAATTACTTGGAAGAACTAC---AAGGTTTTGTA
CTATTGTTCGTCGTGTGCATGTAAACACTGTAGCGCATCTCTCGGCGTCAGATTCTGCCAACTCTTGGAGTTGAGTTGAA
TCCAGCGTCTCAGCTTGGTTATTTGCGAACGTTCCGGCAGAGTCTCGCTGCTGGCCTGCGTGCTTCATGCCA----CTGG
ATCTGAAATGTGCAATTGTGCACCCCAAGAGGCAAGAGTTGAGTTGACACGTCC--------CTTTTCCCGCTATTTTGC
CATTAATTGCACTTCACGATGCATGTGATGATGAACACAGTGGCTACCCCAGACGAATTAGATATT--------------
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>SNPs
--------------------------S------------S----------------------------------------
-------------------------------------------------------------SSS----------------
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--------------------------------S------SSSS-SS---------------------------------S
-SS--S-SS-----------------------------------------------------------------------
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----S-----------------S---S--S----------S-S-S------------S--S----S--------------
--------------------------------------------S-----------------------------------
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----------------------------------SS------------S-------------------------------
----------------------SSSSS----------------------------------S-----S-S----------
---------------------------S----SS-S-S-----------------------------------------S
----------S----------------S----------------------------------------------------
---------------S---------------S--------------------S---------------------------
------------------------------------------------------------S---S---------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------S-----------------------
-----------SSS-------------------------S----------------------------------------
--------------S----S------S------------S----------------------------------------
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------------------------------------------------------S-----------------------S-
-----S-S-------S--------------SSSSSSSSSSSSSSSSSS----S-----S---------------------
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---------------------------------SSS--------------------------------------------
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---------------------------------------------------S-----------S----------------
------------------------------------------------------------------S-------------
-----------------------------------------------S--------------------------------
------------------S---S---------------------SSS-SSS---SSSSSSSS------------------
---------------------------------------------------S--------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1613
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-------------------------------------------------------------------------CACAGCG
AGCAAAGCAACAC-------------------------------------------------------------------
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>reverse_3122
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-TTCGGATGCGTCAGTCAACA-----------------------------------------------------------
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