Multiple sequence alignment - TraesCS2D01G340500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G340500 chr2D 100.000 4044 0 0 1 4044 435050200 435046157 0.000000e+00 7468
1 TraesCS2D01G340500 chr2B 95.686 1298 46 6 1343 2634 513474792 513473499 0.000000e+00 2078
2 TraesCS2D01G340500 chr2B 94.390 1337 51 15 2714 4044 513473501 513472183 0.000000e+00 2032
3 TraesCS2D01G340500 chr2B 89.364 771 45 14 556 1320 513475581 513474842 0.000000e+00 935
4 TraesCS2D01G340500 chr2B 82.826 460 42 22 3 443 513476019 513475578 1.060000e-100 377
5 TraesCS2D01G340500 chr2B 97.727 88 1 1 2632 2718 354879210 354879123 2.520000e-32 150
6 TraesCS2D01G340500 chr2B 90.826 109 7 3 2613 2719 483453057 483452950 4.210000e-30 143
7 TraesCS2D01G340500 chr2A 89.730 779 50 16 551 1320 551812417 551813174 0.000000e+00 968
8 TraesCS2D01G340500 chr2A 95.362 539 22 3 1343 1878 551813224 551813762 0.000000e+00 854
9 TraesCS2D01G340500 chr2A 83.406 458 42 16 1 443 551811986 551812424 1.050000e-105 394
10 TraesCS2D01G340500 chr2A 93.000 100 5 2 2623 2720 632952898 632952997 1.170000e-30 145
11 TraesCS2D01G340500 chr3A 98.837 86 1 0 2632 2717 45603268 45603353 1.950000e-33 154
12 TraesCS2D01G340500 chr3A 97.727 88 1 1 2630 2716 710277881 710277968 2.520000e-32 150
13 TraesCS2D01G340500 chr7D 97.701 87 1 1 2632 2717 195626183 195626097 9.060000e-32 148
14 TraesCS2D01G340500 chr3B 96.629 89 2 1 2630 2717 65214143 65214055 3.260000e-31 147
15 TraesCS2D01G340500 chr5D 95.556 90 3 1 2629 2717 434549400 434549311 4.210000e-30 143
16 TraesCS2D01G340500 chr3D 91.176 102 7 1 2631 2730 278515032 278514931 1.960000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G340500 chr2D 435046157 435050200 4043 True 7468.000000 7468 100.000000 1 4044 1 chr2D.!!$R1 4043
1 TraesCS2D01G340500 chr2B 513472183 513476019 3836 True 1355.500000 2078 90.566500 3 4044 4 chr2B.!!$R3 4041
2 TraesCS2D01G340500 chr2A 551811986 551813762 1776 False 738.666667 968 89.499333 1 1878 3 chr2A.!!$F2 1877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 86 0.037419 CGGAAGGTTTGGCCATTTGG 60.037 55.0 6.09 0.00 40.61 3.28 F
467 491 0.106708 ACGTTGGCAGTGACTGATGT 59.893 50.0 18.18 4.23 32.44 3.06 F
1160 1200 0.549469 AAATTCCCCCTAACCGCGAT 59.451 50.0 8.23 0.00 0.00 4.58 F
2585 2656 0.103823 TCCTTTGGGTGGAAGGGGTA 60.104 55.0 3.30 0.00 43.13 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1376 0.179020 CAAGTCTGGTGGGAGCACAA 60.179 55.0 0.00 0.00 0.00 3.33 R
1724 1793 0.321671 TGCCTTGCAGAGACCTACAC 59.678 55.0 0.00 0.00 33.32 2.90 R
2902 2974 0.107848 CAACCGTATGAGACACCCCC 60.108 60.0 0.00 0.00 0.00 5.40 R
3409 3484 0.108329 AAGTACCGGTTCATGCTCCG 60.108 55.0 15.04 17.34 45.42 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.038302 TGACCTTGTAATCTGTTCAGGTATCTT 60.038 37.037 0.00 0.00 0.00 2.40
30 31 7.106239 ACCTTGTAATCTGTTCAGGTATCTTG 58.894 38.462 0.00 0.00 0.00 3.02
31 32 7.106239 CCTTGTAATCTGTTCAGGTATCTTGT 58.894 38.462 0.00 0.00 0.00 3.16
32 33 7.278868 CCTTGTAATCTGTTCAGGTATCTTGTC 59.721 40.741 0.00 0.00 0.00 3.18
34 35 3.868757 TCTGTTCAGGTATCTTGTCCG 57.131 47.619 0.00 0.00 0.00 4.79
36 37 2.496070 CTGTTCAGGTATCTTGTCCGGA 59.504 50.000 0.00 0.00 0.00 5.14
38 39 2.496470 GTTCAGGTATCTTGTCCGGAGT 59.504 50.000 3.06 0.00 30.61 3.85
39 40 2.376109 TCAGGTATCTTGTCCGGAGTC 58.624 52.381 3.06 0.00 0.00 3.36
44 47 5.021458 AGGTATCTTGTCCGGAGTCTTTTA 58.979 41.667 3.06 0.00 0.00 1.52
54 57 2.094130 CGGAGTCTTTTAGGGTGGAGTC 60.094 54.545 0.00 0.00 0.00 3.36
76 79 0.610785 TGGGATTCGGAAGGTTTGGC 60.611 55.000 0.00 0.00 0.00 4.52
77 80 1.320344 GGGATTCGGAAGGTTTGGCC 61.320 60.000 0.00 0.00 37.58 5.36
78 81 0.610785 GGATTCGGAAGGTTTGGCCA 60.611 55.000 0.00 0.00 40.61 5.36
79 82 1.474330 GATTCGGAAGGTTTGGCCAT 58.526 50.000 6.09 0.00 40.61 4.40
80 83 1.824852 GATTCGGAAGGTTTGGCCATT 59.175 47.619 6.09 0.00 40.61 3.16
81 84 1.710816 TTCGGAAGGTTTGGCCATTT 58.289 45.000 6.09 0.00 40.61 2.32
82 85 0.965439 TCGGAAGGTTTGGCCATTTG 59.035 50.000 6.09 0.00 40.61 2.32
83 86 0.037419 CGGAAGGTTTGGCCATTTGG 60.037 55.000 6.09 0.00 40.61 3.28
128 132 3.006110 AGTTTCGGTCCATTGTCTTCGTA 59.994 43.478 0.00 0.00 0.00 3.43
134 138 3.387050 GGTCCATTGTCTTCGTATAGGGT 59.613 47.826 0.00 0.00 0.00 4.34
135 139 4.141779 GGTCCATTGTCTTCGTATAGGGTT 60.142 45.833 0.00 0.00 0.00 4.11
136 140 5.425630 GTCCATTGTCTTCGTATAGGGTTT 58.574 41.667 0.00 0.00 0.00 3.27
137 141 5.878669 GTCCATTGTCTTCGTATAGGGTTTT 59.121 40.000 0.00 0.00 0.00 2.43
138 142 6.036844 GTCCATTGTCTTCGTATAGGGTTTTC 59.963 42.308 0.00 0.00 0.00 2.29
139 143 5.296035 CCATTGTCTTCGTATAGGGTTTTCC 59.704 44.000 0.00 0.00 39.75 3.13
140 144 5.486735 TTGTCTTCGTATAGGGTTTTCCA 57.513 39.130 0.00 0.00 42.91 3.53
141 145 5.687166 TGTCTTCGTATAGGGTTTTCCAT 57.313 39.130 0.00 0.00 42.91 3.41
142 146 5.424757 TGTCTTCGTATAGGGTTTTCCATG 58.575 41.667 0.00 0.00 42.91 3.66
143 147 5.046159 TGTCTTCGTATAGGGTTTTCCATGT 60.046 40.000 0.00 0.00 42.91 3.21
144 148 6.154877 TGTCTTCGTATAGGGTTTTCCATGTA 59.845 38.462 0.00 0.00 42.91 2.29
147 151 6.297080 TCGTATAGGGTTTTCCATGTACAA 57.703 37.500 0.00 0.00 44.59 2.41
151 155 7.751793 CGTATAGGGTTTTCCATGTACAAAAAC 59.248 37.037 19.37 19.37 44.59 2.43
152 156 5.941555 AGGGTTTTCCATGTACAAAAACA 57.058 34.783 24.90 4.19 42.09 2.83
157 161 7.262048 GGTTTTCCATGTACAAAAACAGAAGA 58.738 34.615 24.90 7.46 42.09 2.87
158 162 7.926018 GGTTTTCCATGTACAAAAACAGAAGAT 59.074 33.333 24.90 0.00 42.09 2.40
159 163 8.968242 GTTTTCCATGTACAAAAACAGAAGATC 58.032 33.333 21.35 0.00 40.74 2.75
165 169 6.601332 TGTACAAAAACAGAAGATCCTTCCT 58.399 36.000 0.00 0.00 0.00 3.36
169 173 7.492524 ACAAAAACAGAAGATCCTTCCTTTTC 58.507 34.615 3.33 0.00 0.00 2.29
171 175 8.850156 CAAAAACAGAAGATCCTTCCTTTTCTA 58.150 33.333 3.33 0.00 0.00 2.10
172 176 7.987750 AAACAGAAGATCCTTCCTTTTCTAC 57.012 36.000 3.33 0.00 0.00 2.59
175 179 5.190726 CAGAAGATCCTTCCTTTTCTACCCT 59.809 44.000 3.33 0.00 0.00 4.34
190 200 4.510571 TCTACCCTTTCCGCATTAGTTTC 58.489 43.478 0.00 0.00 0.00 2.78
194 206 3.756434 CCCTTTCCGCATTAGTTTCTTCA 59.244 43.478 0.00 0.00 0.00 3.02
210 224 4.437682 TCTTCATCAGTTCTTGGTTGGT 57.562 40.909 0.00 0.00 0.00 3.67
213 227 4.371624 TCATCAGTTCTTGGTTGGTGAT 57.628 40.909 0.00 0.00 27.57 3.06
235 249 3.357079 GCCGCAGTGTGGAGTTGG 61.357 66.667 27.04 0.00 34.74 3.77
239 253 3.133365 GCAGTGTGGAGTTGGGGGT 62.133 63.158 0.00 0.00 0.00 4.95
336 351 2.929398 TGTGATTGACGAACATGGATCG 59.071 45.455 18.13 18.13 45.47 3.69
374 398 3.094484 TGTTCCTTGGTTGGTTGAGTT 57.906 42.857 0.00 0.00 0.00 3.01
375 399 3.436243 TGTTCCTTGGTTGGTTGAGTTT 58.564 40.909 0.00 0.00 0.00 2.66
400 424 1.202452 TCCACTATGATGCTGCTGACG 60.202 52.381 0.00 0.00 0.00 4.35
436 460 8.933653 TCGGGGATGCATCTATATAATTGATTA 58.066 33.333 25.28 0.00 0.00 1.75
450 474 5.862924 AATTGATTAGTTGACTGGTCACG 57.137 39.130 2.65 0.00 39.66 4.35
451 475 4.330944 TTGATTAGTTGACTGGTCACGT 57.669 40.909 2.65 0.00 39.66 4.49
452 476 4.330944 TGATTAGTTGACTGGTCACGTT 57.669 40.909 2.65 0.00 39.66 3.99
453 477 4.055360 TGATTAGTTGACTGGTCACGTTG 58.945 43.478 2.65 0.00 39.66 4.10
454 478 2.519377 TAGTTGACTGGTCACGTTGG 57.481 50.000 2.65 0.00 39.66 3.77
455 479 0.814010 AGTTGACTGGTCACGTTGGC 60.814 55.000 2.65 0.00 39.66 4.52
456 480 1.092921 GTTGACTGGTCACGTTGGCA 61.093 55.000 2.65 0.00 39.66 4.92
457 481 0.813610 TTGACTGGTCACGTTGGCAG 60.814 55.000 2.65 0.00 39.66 4.85
458 482 1.227556 GACTGGTCACGTTGGCAGT 60.228 57.895 0.00 0.00 0.00 4.40
459 483 1.498865 GACTGGTCACGTTGGCAGTG 61.499 60.000 0.00 0.68 40.71 3.66
460 484 1.227527 CTGGTCACGTTGGCAGTGA 60.228 57.895 5.55 5.55 45.23 3.41
463 487 4.436515 TCACGTTGGCAGTGACTG 57.563 55.556 8.52 8.52 42.91 3.51
464 488 1.819905 TCACGTTGGCAGTGACTGA 59.180 52.632 18.18 0.00 42.91 3.41
465 489 0.392706 TCACGTTGGCAGTGACTGAT 59.607 50.000 18.18 0.00 42.91 2.90
466 490 0.514255 CACGTTGGCAGTGACTGATG 59.486 55.000 18.18 3.54 41.83 3.07
467 491 0.106708 ACGTTGGCAGTGACTGATGT 59.893 50.000 18.18 4.23 32.44 3.06
468 492 0.792640 CGTTGGCAGTGACTGATGTC 59.207 55.000 18.18 2.92 43.20 3.06
480 504 4.446994 GACTGATGTCACTGATCACAGA 57.553 45.455 12.64 1.86 42.96 3.41
481 505 5.008619 GACTGATGTCACTGATCACAGAT 57.991 43.478 12.64 0.00 42.96 2.90
482 506 4.756502 ACTGATGTCACTGATCACAGATG 58.243 43.478 12.64 0.84 46.03 2.90
483 507 4.465305 ACTGATGTCACTGATCACAGATGA 59.535 41.667 12.64 2.97 46.03 2.92
484 508 6.683360 GACTGATGTCACTGATCACAGATGAT 60.683 42.308 12.64 0.00 44.11 2.45
495 519 4.897509 TCACAGATGATCAGTTCACCTT 57.102 40.909 0.09 0.00 37.11 3.50
496 520 4.572909 TCACAGATGATCAGTTCACCTTG 58.427 43.478 0.09 0.00 37.11 3.61
497 521 4.040829 TCACAGATGATCAGTTCACCTTGT 59.959 41.667 0.09 0.00 37.11 3.16
498 522 4.758674 CACAGATGATCAGTTCACCTTGTT 59.241 41.667 0.09 0.00 37.11 2.83
499 523 5.934043 CACAGATGATCAGTTCACCTTGTTA 59.066 40.000 0.09 0.00 37.11 2.41
500 524 6.091849 CACAGATGATCAGTTCACCTTGTTAG 59.908 42.308 0.09 0.00 37.11 2.34
502 526 4.286297 TGATCAGTTCACCTTGTTAGGG 57.714 45.455 0.00 0.00 46.58 3.53
503 527 3.650942 TGATCAGTTCACCTTGTTAGGGT 59.349 43.478 0.00 0.00 46.58 4.34
504 528 3.764237 TCAGTTCACCTTGTTAGGGTC 57.236 47.619 0.00 0.00 46.58 4.46
505 529 3.314693 TCAGTTCACCTTGTTAGGGTCT 58.685 45.455 0.00 0.00 46.58 3.85
506 530 4.485875 TCAGTTCACCTTGTTAGGGTCTA 58.514 43.478 0.00 0.00 46.58 2.59
507 531 5.091552 TCAGTTCACCTTGTTAGGGTCTAT 58.908 41.667 0.00 0.00 46.58 1.98
508 532 5.046591 TCAGTTCACCTTGTTAGGGTCTATG 60.047 44.000 0.00 0.00 46.58 2.23
509 533 4.225267 AGTTCACCTTGTTAGGGTCTATGG 59.775 45.833 0.00 0.00 46.58 2.74
510 534 3.798515 TCACCTTGTTAGGGTCTATGGT 58.201 45.455 0.00 0.00 46.58 3.55
511 535 3.517901 TCACCTTGTTAGGGTCTATGGTG 59.482 47.826 0.00 0.00 46.58 4.17
512 536 3.263425 CACCTTGTTAGGGTCTATGGTGT 59.737 47.826 0.00 0.00 46.58 4.16
513 537 3.914435 ACCTTGTTAGGGTCTATGGTGTT 59.086 43.478 0.00 0.00 46.58 3.32
514 538 4.352893 ACCTTGTTAGGGTCTATGGTGTTT 59.647 41.667 0.00 0.00 46.58 2.83
515 539 4.941873 CCTTGTTAGGGTCTATGGTGTTTC 59.058 45.833 0.00 0.00 37.94 2.78
516 540 5.514136 CCTTGTTAGGGTCTATGGTGTTTCA 60.514 44.000 0.00 0.00 37.94 2.69
517 541 4.901868 TGTTAGGGTCTATGGTGTTTCAC 58.098 43.478 0.00 0.00 0.00 3.18
529 553 3.559238 GTGTTTCACCTAGTGCATTGG 57.441 47.619 0.00 0.00 32.98 3.16
530 554 3.146066 GTGTTTCACCTAGTGCATTGGA 58.854 45.455 9.14 0.00 32.98 3.53
531 555 3.758554 GTGTTTCACCTAGTGCATTGGAT 59.241 43.478 9.14 0.00 32.98 3.41
532 556 4.218417 GTGTTTCACCTAGTGCATTGGATT 59.782 41.667 9.14 0.00 32.98 3.01
533 557 4.458989 TGTTTCACCTAGTGCATTGGATTC 59.541 41.667 9.14 0.00 32.98 2.52
534 558 4.574674 TTCACCTAGTGCATTGGATTCT 57.425 40.909 9.14 0.00 32.98 2.40
535 559 3.877559 TCACCTAGTGCATTGGATTCTG 58.122 45.455 9.14 0.00 32.98 3.02
536 560 3.519107 TCACCTAGTGCATTGGATTCTGA 59.481 43.478 9.14 1.08 32.98 3.27
537 561 4.164796 TCACCTAGTGCATTGGATTCTGAT 59.835 41.667 9.14 0.00 32.98 2.90
538 562 4.275196 CACCTAGTGCATTGGATTCTGATG 59.725 45.833 9.14 0.00 0.00 3.07
539 563 3.252701 CCTAGTGCATTGGATTCTGATGC 59.747 47.826 14.01 14.01 44.81 3.91
540 564 3.014304 AGTGCATTGGATTCTGATGCT 57.986 42.857 18.61 4.57 44.84 3.79
541 565 4.160642 AGTGCATTGGATTCTGATGCTA 57.839 40.909 18.61 8.42 44.84 3.49
542 566 4.135306 AGTGCATTGGATTCTGATGCTAG 58.865 43.478 18.61 0.00 44.84 3.42
543 567 3.881688 GTGCATTGGATTCTGATGCTAGT 59.118 43.478 18.61 0.00 44.84 2.57
544 568 5.059161 GTGCATTGGATTCTGATGCTAGTA 58.941 41.667 18.61 0.00 44.84 1.82
545 569 5.704515 GTGCATTGGATTCTGATGCTAGTAT 59.295 40.000 18.61 0.00 44.84 2.12
546 570 5.704053 TGCATTGGATTCTGATGCTAGTATG 59.296 40.000 18.61 0.00 44.84 2.39
547 571 5.391736 GCATTGGATTCTGATGCTAGTATGC 60.392 44.000 0.00 0.00 42.12 3.14
548 572 3.917988 TGGATTCTGATGCTAGTATGCG 58.082 45.455 0.00 0.00 35.36 4.73
549 573 3.573967 TGGATTCTGATGCTAGTATGCGA 59.426 43.478 0.00 0.00 35.36 5.10
550 574 4.221482 TGGATTCTGATGCTAGTATGCGAT 59.779 41.667 0.00 0.00 35.36 4.58
551 575 4.565962 GGATTCTGATGCTAGTATGCGATG 59.434 45.833 0.00 0.00 35.36 3.84
552 576 2.951726 TCTGATGCTAGTATGCGATGC 58.048 47.619 0.00 0.00 35.36 3.91
553 577 2.560105 TCTGATGCTAGTATGCGATGCT 59.440 45.455 0.00 0.00 35.36 3.79
554 578 3.758554 TCTGATGCTAGTATGCGATGCTA 59.241 43.478 0.00 0.00 35.36 3.49
587 613 3.259374 CCTGTAAGATCAGAGGTGTGTGT 59.741 47.826 0.00 0.00 37.61 3.72
588 614 4.240888 CTGTAAGATCAGAGGTGTGTGTG 58.759 47.826 0.00 0.00 37.61 3.82
611 637 4.183101 GGTCCGTCGTAACCAATTTCATA 58.817 43.478 8.70 0.00 35.53 2.15
620 646 9.438291 GTCGTAACCAATTTCATATTCAGAATG 57.562 33.333 5.85 0.00 37.54 2.67
625 652 6.608405 ACCAATTTCATATTCAGAATGGCTCA 59.392 34.615 5.85 0.00 36.16 4.26
634 661 5.441718 TTCAGAATGGCTCAACTTAGGAT 57.558 39.130 0.00 0.00 36.16 3.24
635 662 5.028549 TCAGAATGGCTCAACTTAGGATC 57.971 43.478 0.00 0.00 36.16 3.36
636 663 4.471025 TCAGAATGGCTCAACTTAGGATCA 59.529 41.667 0.00 0.00 36.16 2.92
637 664 4.574013 CAGAATGGCTCAACTTAGGATCAC 59.426 45.833 0.00 0.00 0.00 3.06
638 665 4.225942 AGAATGGCTCAACTTAGGATCACA 59.774 41.667 0.00 0.00 0.00 3.58
639 666 4.785346 ATGGCTCAACTTAGGATCACAT 57.215 40.909 0.00 0.00 0.00 3.21
640 667 5.894298 ATGGCTCAACTTAGGATCACATA 57.106 39.130 0.00 0.00 0.00 2.29
641 668 5.894298 TGGCTCAACTTAGGATCACATAT 57.106 39.130 0.00 0.00 0.00 1.78
655 682 6.014413 AGGATCACATATTCACATCTCTCCAG 60.014 42.308 0.00 0.00 0.00 3.86
678 708 6.651225 CAGTCATGCTCTATGATCATCATGTT 59.349 38.462 23.82 15.70 46.85 2.71
684 714 9.610705 ATGCTCTATGATCATCATGTTATTACC 57.389 33.333 12.53 0.00 37.70 2.85
685 715 8.043113 TGCTCTATGATCATCATGTTATTACCC 58.957 37.037 12.53 0.00 37.70 3.69
732 762 5.808042 AGTTGCAGCATGAGTTACATTAG 57.192 39.130 2.55 0.00 39.69 1.73
770 803 8.967664 TGGTTACTGTTTTGTACTCTTAACAT 57.032 30.769 0.00 0.00 30.87 2.71
829 863 9.903682 CTCTACAAGAATGTTCATGTTTTGAAT 57.096 29.630 8.65 0.00 45.77 2.57
876 915 8.384365 GCTTAGTTACTTTCTCTACAAGAATGC 58.616 37.037 0.00 0.00 43.50 3.56
877 916 9.424319 CTTAGTTACTTTCTCTACAAGAATGCA 57.576 33.333 0.00 0.00 43.50 3.96
906 945 3.626930 TGTTTGCAAGGACACTAGGTTT 58.373 40.909 0.00 0.00 0.00 3.27
941 980 6.418101 AGCCAATTGACAACTCAGTATGTAT 58.582 36.000 7.12 0.00 37.40 2.29
943 982 6.458751 GCCAATTGACAACTCAGTATGTATGG 60.459 42.308 7.12 0.00 37.40 2.74
1025 1065 2.280524 TACAGCAAGCAACGCCGT 60.281 55.556 0.00 0.00 0.00 5.68
1044 1084 3.809832 CCGTGCTGGTTATAGAATTCCAG 59.190 47.826 0.65 3.00 46.96 3.86
1061 1101 8.051535 AGAATTCCAGAACATAGTGAATGATGT 58.948 33.333 0.65 0.00 39.07 3.06
1123 1163 5.023533 ACTTATGAAGCGCCATTTCTCTA 57.976 39.130 2.29 0.00 0.00 2.43
1141 1181 3.433882 CTCTAGAGAAGAAGCCGTAGGGA 60.434 52.174 15.05 0.00 40.89 4.20
1160 1200 0.549469 AAATTCCCCCTAACCGCGAT 59.451 50.000 8.23 0.00 0.00 4.58
1242 1282 4.798574 CTTTGGAGGCAAGTTGTACAATC 58.201 43.478 12.26 3.84 0.00 2.67
1268 1308 6.202954 ACATTCTTAGTTCTCACGACTTTTGG 59.797 38.462 0.00 0.00 0.00 3.28
1271 1311 3.277142 AGTTCTCACGACTTTTGGGTT 57.723 42.857 0.00 0.00 0.00 4.11
1283 1323 5.558083 CGACTTTTGGGTTTTAAAATGCTGC 60.558 40.000 3.52 0.00 0.00 5.25
1300 1340 8.638685 AAATGCTGCTTATGAATTATTGTGAC 57.361 30.769 0.00 0.00 0.00 3.67
1329 1369 7.937649 ACAATGATGTGGAGATAAATGATGTG 58.062 34.615 0.00 0.00 38.69 3.21
1330 1370 7.013942 ACAATGATGTGGAGATAAATGATGTGG 59.986 37.037 0.00 0.00 38.69 4.17
1331 1371 6.251255 TGATGTGGAGATAAATGATGTGGA 57.749 37.500 0.00 0.00 0.00 4.02
1332 1372 6.293698 TGATGTGGAGATAAATGATGTGGAG 58.706 40.000 0.00 0.00 0.00 3.86
1334 1374 6.505048 TGTGGAGATAAATGATGTGGAGAT 57.495 37.500 0.00 0.00 0.00 2.75
1335 1375 7.616528 TGTGGAGATAAATGATGTGGAGATA 57.383 36.000 0.00 0.00 0.00 1.98
1336 1376 8.211030 TGTGGAGATAAATGATGTGGAGATAT 57.789 34.615 0.00 0.00 0.00 1.63
1338 1378 8.944029 GTGGAGATAAATGATGTGGAGATATTG 58.056 37.037 0.00 0.00 0.00 1.90
1339 1379 8.663167 TGGAGATAAATGATGTGGAGATATTGT 58.337 33.333 0.00 0.00 0.00 2.71
1340 1380 8.944029 GGAGATAAATGATGTGGAGATATTGTG 58.056 37.037 0.00 0.00 0.00 3.33
1341 1381 8.332996 AGATAAATGATGTGGAGATATTGTGC 57.667 34.615 0.00 0.00 0.00 4.57
1383 1450 1.002033 CACTTCCAGAACTTGCAGCAC 60.002 52.381 0.00 0.00 0.00 4.40
1388 1455 1.436600 CAGAACTTGCAGCACTCGAT 58.563 50.000 0.00 0.00 0.00 3.59
1457 1524 2.186826 GTGGCTGAAGCAACGGTGT 61.187 57.895 0.66 0.00 44.36 4.16
1559 1626 1.152483 ACCAGGCCACAGCATTGTT 60.152 52.632 5.01 0.00 42.56 2.83
1664 1732 2.873649 GCCATGCCTTATCAGGTAGAGC 60.874 54.545 0.00 0.00 43.18 4.09
1705 1774 1.134401 GGGAATCTTGTCTGCCGATGA 60.134 52.381 0.00 0.00 0.00 2.92
1724 1793 3.188492 TGAAACAAACTGTTGCTGCATG 58.812 40.909 1.84 0.00 40.14 4.06
1927 1997 3.568538 CATCTTTGTAGTGCAAGCAACC 58.431 45.455 0.00 0.00 38.47 3.77
1937 2007 1.387295 GCAAGCAACCATAGGAGGCC 61.387 60.000 0.00 0.00 0.00 5.19
1957 2027 1.801913 CTTCTCGGCGGTTCTGTCG 60.802 63.158 7.21 0.00 38.57 4.35
2056 2126 1.671901 CTCGTCTTCTCTCTGGGCCC 61.672 65.000 17.59 17.59 0.00 5.80
2070 2140 0.919710 GGGCCCCTTGAGAATGTACT 59.080 55.000 12.23 0.00 0.00 2.73
2108 2178 2.942306 GCCGGCAATTGTTACCTCCTTA 60.942 50.000 24.80 0.00 0.00 2.69
2183 2253 4.871557 TGCTTTTCTTATCCAATTGCATGC 59.128 37.500 11.82 11.82 0.00 4.06
2184 2254 4.871557 GCTTTTCTTATCCAATTGCATGCA 59.128 37.500 18.46 18.46 0.00 3.96
2185 2255 5.526111 GCTTTTCTTATCCAATTGCATGCAT 59.474 36.000 23.37 7.94 0.00 3.96
2186 2256 6.511121 GCTTTTCTTATCCAATTGCATGCATG 60.511 38.462 23.37 22.70 0.00 4.06
2188 2258 5.190992 TCTTATCCAATTGCATGCATGTC 57.809 39.130 26.79 18.98 0.00 3.06
2191 2261 2.112190 TCCAATTGCATGCATGTCCAT 58.888 42.857 26.79 8.77 0.00 3.41
2192 2262 2.502130 TCCAATTGCATGCATGTCCATT 59.498 40.909 26.79 14.81 0.00 3.16
2193 2263 2.869801 CCAATTGCATGCATGTCCATTC 59.130 45.455 26.79 10.36 0.00 2.67
2194 2264 3.526534 CAATTGCATGCATGTCCATTCA 58.473 40.909 26.79 12.86 0.00 2.57
2195 2265 3.897141 ATTGCATGCATGTCCATTCAA 57.103 38.095 26.79 20.09 33.97 2.69
2294 2364 2.681064 GCAAGCTTGGGCATGGGA 60.681 61.111 27.10 0.00 41.70 4.37
2326 2396 2.107953 GGCGTCCCTCAGCTGATC 59.892 66.667 18.63 7.49 0.00 2.92
2327 2397 2.279120 GCGTCCCTCAGCTGATCG 60.279 66.667 18.63 18.92 0.00 3.69
2335 2405 1.436600 CTCAGCTGATCGCACACTTT 58.563 50.000 18.63 0.00 42.61 2.66
2345 2415 1.154225 GCACACTTTGCGGGAATCG 60.154 57.895 0.00 0.00 42.79 3.34
2407 2477 4.803426 GTCCTGAGCAGCGACGGG 62.803 72.222 12.46 12.46 0.00 5.28
2430 2501 3.813724 GCTCACCTGGGATGGGGG 61.814 72.222 0.00 0.00 0.00 5.40
2583 2654 1.384191 CTCCTTTGGGTGGAAGGGG 59.616 63.158 3.30 0.00 43.13 4.79
2584 2655 1.388217 TCCTTTGGGTGGAAGGGGT 60.388 57.895 3.30 0.00 43.13 4.95
2585 2656 0.103823 TCCTTTGGGTGGAAGGGGTA 60.104 55.000 3.30 0.00 43.13 3.69
2611 2682 1.153289 CTAGGCTTGCAGGTGCGAT 60.153 57.895 0.00 0.00 45.83 4.58
2621 2692 1.672363 GCAGGTGCGATGAATGAATCA 59.328 47.619 0.00 0.00 43.67 2.57
2635 2706 7.984422 TGAATGAATCATGTGAACTTGTACT 57.016 32.000 0.00 0.00 31.50 2.73
2636 2707 8.032952 TGAATGAATCATGTGAACTTGTACTC 57.967 34.615 0.00 0.00 31.50 2.59
2637 2708 6.992063 ATGAATCATGTGAACTTGTACTCC 57.008 37.500 0.00 0.00 0.00 3.85
2638 2709 5.245531 TGAATCATGTGAACTTGTACTCCC 58.754 41.667 0.00 0.00 0.00 4.30
2639 2710 5.013079 TGAATCATGTGAACTTGTACTCCCT 59.987 40.000 0.00 0.00 0.00 4.20
2640 2711 4.537135 TCATGTGAACTTGTACTCCCTC 57.463 45.455 0.00 0.00 0.00 4.30
2641 2712 3.260884 TCATGTGAACTTGTACTCCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
2642 2713 1.616865 TGTGAACTTGTACTCCCTCCG 59.383 52.381 0.00 0.00 0.00 4.63
2643 2714 1.617357 GTGAACTTGTACTCCCTCCGT 59.383 52.381 0.00 0.00 0.00 4.69
2644 2715 2.821969 GTGAACTTGTACTCCCTCCGTA 59.178 50.000 0.00 0.00 0.00 4.02
2645 2716 3.256631 GTGAACTTGTACTCCCTCCGTAA 59.743 47.826 0.00 0.00 0.00 3.18
2646 2717 3.896888 TGAACTTGTACTCCCTCCGTAAA 59.103 43.478 0.00 0.00 0.00 2.01
2647 2718 4.021719 TGAACTTGTACTCCCTCCGTAAAG 60.022 45.833 0.00 0.00 0.00 1.85
2648 2719 3.771216 ACTTGTACTCCCTCCGTAAAGA 58.229 45.455 0.00 0.00 0.00 2.52
2649 2720 4.154942 ACTTGTACTCCCTCCGTAAAGAA 58.845 43.478 0.00 0.00 0.00 2.52
2650 2721 4.590222 ACTTGTACTCCCTCCGTAAAGAAA 59.410 41.667 0.00 0.00 0.00 2.52
2651 2722 5.247792 ACTTGTACTCCCTCCGTAAAGAAAT 59.752 40.000 0.00 0.00 0.00 2.17
2652 2723 6.438425 ACTTGTACTCCCTCCGTAAAGAAATA 59.562 38.462 0.00 0.00 0.00 1.40
2653 2724 7.125356 ACTTGTACTCCCTCCGTAAAGAAATAT 59.875 37.037 0.00 0.00 0.00 1.28
2654 2725 8.537728 TTGTACTCCCTCCGTAAAGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
2655 2726 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
2656 2727 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
2657 2728 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2658 2729 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2659 2730 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2660 2731 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2661 2732 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2662 2733 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2663 2734 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2664 2735 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2665 2736 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2666 2737 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2678 2749 7.393841 AAGAGCGTTTAGATCACTAAGTAGT 57.606 36.000 0.00 0.00 39.36 2.73
2693 2764 7.393841 ACTAAGTAGTGATCTAAACGCTCTT 57.606 36.000 0.00 0.00 34.72 2.85
2694 2765 8.503458 ACTAAGTAGTGATCTAAACGCTCTTA 57.497 34.615 0.00 0.00 34.72 2.10
2695 2766 9.122779 ACTAAGTAGTGATCTAAACGCTCTTAT 57.877 33.333 0.00 0.00 34.72 1.73
2711 2782 9.930693 AACGCTCTTATATTTCTTTATAGAGGG 57.069 33.333 0.00 0.00 38.95 4.30
2712 2783 9.310449 ACGCTCTTATATTTCTTTATAGAGGGA 57.690 33.333 16.73 0.00 37.30 4.20
2732 2803 5.612351 GGGAGTAGAACCCAACTATTCATC 58.388 45.833 0.00 0.00 46.05 2.92
2736 2808 7.259088 AGTAGAACCCAACTATTCATCTTGT 57.741 36.000 0.00 0.00 0.00 3.16
2746 2818 8.660373 CCAACTATTCATCTTGTCAAAGTACTC 58.340 37.037 0.00 0.00 34.78 2.59
2754 2826 9.208022 TCATCTTGTCAAAGTACTCAAATGTAG 57.792 33.333 0.00 0.00 34.78 2.74
2791 2863 0.959372 TTCAGGACGAGGACGAGGAC 60.959 60.000 0.00 0.00 42.66 3.85
2797 2869 1.297456 ACGAGGACGAGGACGAGAAC 61.297 60.000 0.00 0.00 42.66 3.01
2846 2918 0.320374 CTCACTCACCGGGCTAAACA 59.680 55.000 6.32 0.00 0.00 2.83
2950 3022 0.322322 AATCCGGAAAGGTGTACGCA 59.678 50.000 9.01 0.00 41.99 5.24
3029 3101 1.538876 CCCCCTCTCCAGGTTGACA 60.539 63.158 0.00 0.00 38.30 3.58
3051 3123 1.693627 GATCTCGCCTAGTTCCTCCA 58.306 55.000 0.00 0.00 0.00 3.86
3055 3127 1.142748 CGCCTAGTTCCTCCAGCAG 59.857 63.158 0.00 0.00 0.00 4.24
3057 3129 1.903877 GCCTAGTTCCTCCAGCAGCA 61.904 60.000 0.00 0.00 0.00 4.41
3058 3130 0.835941 CCTAGTTCCTCCAGCAGCAT 59.164 55.000 0.00 0.00 0.00 3.79
3060 3132 1.761784 CTAGTTCCTCCAGCAGCATCT 59.238 52.381 0.00 0.00 0.00 2.90
3061 3133 0.252479 AGTTCCTCCAGCAGCATCTG 59.748 55.000 0.00 0.00 34.12 2.90
3070 3142 4.728409 CAGCATCTGCCTGGAACA 57.272 55.556 0.00 0.00 43.38 3.18
3071 3143 2.177950 CAGCATCTGCCTGGAACAC 58.822 57.895 0.00 0.00 43.38 3.32
3084 3156 4.504858 CCTGGAACACCTTCATACTGTAC 58.495 47.826 0.00 0.00 0.00 2.90
3092 3164 4.466370 CACCTTCATACTGTACAGGGAGAA 59.534 45.833 26.12 21.71 0.00 2.87
3094 3166 5.187967 ACCTTCATACTGTACAGGGAGAAAG 59.812 44.000 26.12 19.37 0.00 2.62
3096 3168 6.070767 CCTTCATACTGTACAGGGAGAAAGAA 60.071 42.308 26.12 16.70 0.00 2.52
3098 3170 6.936279 TCATACTGTACAGGGAGAAAGAAAG 58.064 40.000 26.12 0.00 0.00 2.62
3102 3174 6.056236 ACTGTACAGGGAGAAAGAAAGAAAC 58.944 40.000 26.12 0.00 0.00 2.78
3106 3178 2.110188 AGGGAGAAAGAAAGAAACCCCC 59.890 50.000 0.00 0.00 36.84 5.40
3107 3179 2.110188 GGGAGAAAGAAAGAAACCCCCT 59.890 50.000 0.00 0.00 0.00 4.79
3108 3180 3.422796 GGAGAAAGAAAGAAACCCCCTC 58.577 50.000 0.00 0.00 0.00 4.30
3141 3213 9.286946 AGATCGTAAATTTAGTTCGTTCTAGTG 57.713 33.333 14.03 0.00 31.78 2.74
3142 3214 8.976986 ATCGTAAATTTAGTTCGTTCTAGTGT 57.023 30.769 0.00 0.00 0.00 3.55
3143 3215 8.801715 TCGTAAATTTAGTTCGTTCTAGTGTT 57.198 30.769 0.00 0.00 0.00 3.32
3144 3216 9.248291 TCGTAAATTTAGTTCGTTCTAGTGTTT 57.752 29.630 0.00 0.00 0.00 2.83
3145 3217 9.853921 CGTAAATTTAGTTCGTTCTAGTGTTTT 57.146 29.630 0.00 0.00 0.00 2.43
3173 3245 5.826208 CCTTGGTTGGTTACTTTTGAGTAGT 59.174 40.000 0.00 0.00 0.00 2.73
3199 3271 6.706716 GGACAGATATATGATGATGCCATGAG 59.293 42.308 3.93 0.00 32.09 2.90
3256 3328 6.882656 TGCTTAGCTCTTCATTCTTCATACT 58.117 36.000 5.60 0.00 0.00 2.12
3379 3454 7.123247 ACTCTTCAAATGCCTAATATGCAGTTT 59.877 33.333 0.77 0.00 43.67 2.66
3382 3457 5.655974 TCAAATGCCTAATATGCAGTTTGGA 59.344 36.000 15.77 6.30 43.67 3.53
3438 3513 4.131596 TGAACCGGTACTTGAAGAAAAGG 58.868 43.478 8.00 0.00 0.00 3.11
3461 3536 2.548057 GGTCAACGCTTTTGATCTCACA 59.452 45.455 0.00 0.00 0.00 3.58
3465 3540 5.050363 GTCAACGCTTTTGATCTCACACTTA 60.050 40.000 0.00 0.00 0.00 2.24
3481 3556 3.311596 ACACTTACAAAGCGGACAGAAAC 59.688 43.478 0.00 0.00 0.00 2.78
3490 3565 0.041312 CGGACAGAAACCGCAAGTTG 60.041 55.000 0.00 0.00 43.74 3.16
3520 3595 3.642778 TTGGCTAGTCTGTCGCCGC 62.643 63.158 0.00 0.00 46.67 6.53
3530 3605 3.430862 GTCGCCGCTCCAAATGCA 61.431 61.111 0.00 0.00 0.00 3.96
3537 3612 2.686235 CCGCTCCAAATGCAATTTTGA 58.314 42.857 13.20 5.21 46.10 2.69
3605 3680 1.071299 ACCGCAGCAGTCATGACAA 59.929 52.632 27.02 0.00 0.00 3.18
3624 3699 6.131264 TGACAAATCTGATGGCATAAGGAAT 58.869 36.000 12.01 0.00 28.68 3.01
3677 3752 0.743345 GCCCGGAAGTCGTATGCTTT 60.743 55.000 0.73 0.00 37.11 3.51
3726 3801 4.509970 TGTTAAGATGGACGTCAACACAAG 59.490 41.667 18.91 0.00 0.00 3.16
3732 3807 3.857052 TGGACGTCAACACAAGATATCC 58.143 45.455 18.91 0.00 0.00 2.59
3774 3849 1.234821 TGTTGTCGAAGGACCAATGC 58.765 50.000 0.00 0.00 42.73 3.56
3962 4037 7.500559 GTGGAAGCATAGAATAAATCAAGGTCT 59.499 37.037 0.00 0.00 0.00 3.85
3967 4042 7.930865 AGCATAGAATAAATCAAGGTCTGTCTC 59.069 37.037 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.621814 CACCCTAAAAGACTCCGGACA 59.378 52.381 0.00 0.00 0.00 4.02
30 31 1.066358 CCACCCTAAAAGACTCCGGAC 60.066 57.143 0.00 0.00 0.00 4.79
31 32 1.203212 TCCACCCTAAAAGACTCCGGA 60.203 52.381 2.93 2.93 0.00 5.14
32 33 1.207329 CTCCACCCTAAAAGACTCCGG 59.793 57.143 0.00 0.00 0.00 5.14
34 35 2.236644 GGACTCCACCCTAAAAGACTCC 59.763 54.545 0.00 0.00 0.00 3.85
36 37 1.900486 CGGACTCCACCCTAAAAGACT 59.100 52.381 0.00 0.00 0.00 3.24
38 39 1.621814 CACGGACTCCACCCTAAAAGA 59.378 52.381 0.00 0.00 0.00 2.52
39 40 1.338769 CCACGGACTCCACCCTAAAAG 60.339 57.143 0.00 0.00 0.00 2.27
44 47 2.765705 AATCCCACGGACTCCACCCT 62.766 60.000 0.00 0.00 32.98 4.34
76 79 1.287739 ACCACCCCATCTACCAAATGG 59.712 52.381 0.00 0.00 42.84 3.16
77 80 2.826674 ACCACCCCATCTACCAAATG 57.173 50.000 0.00 0.00 0.00 2.32
78 81 4.480537 TGATAACCACCCCATCTACCAAAT 59.519 41.667 0.00 0.00 0.00 2.32
79 82 3.853181 TGATAACCACCCCATCTACCAAA 59.147 43.478 0.00 0.00 0.00 3.28
80 83 3.458118 CTGATAACCACCCCATCTACCAA 59.542 47.826 0.00 0.00 0.00 3.67
81 84 3.045634 CTGATAACCACCCCATCTACCA 58.954 50.000 0.00 0.00 0.00 3.25
82 85 3.314693 TCTGATAACCACCCCATCTACC 58.685 50.000 0.00 0.00 0.00 3.18
83 86 4.593206 TGATCTGATAACCACCCCATCTAC 59.407 45.833 0.00 0.00 0.00 2.59
128 132 7.507616 TCTGTTTTTGTACATGGAAAACCCTAT 59.492 33.333 22.49 0.00 40.65 2.57
134 138 8.141268 GGATCTTCTGTTTTTGTACATGGAAAA 58.859 33.333 0.00 0.00 0.00 2.29
135 139 7.505585 AGGATCTTCTGTTTTTGTACATGGAAA 59.494 33.333 0.00 0.00 0.00 3.13
136 140 7.004086 AGGATCTTCTGTTTTTGTACATGGAA 58.996 34.615 0.00 0.00 0.00 3.53
137 141 6.542821 AGGATCTTCTGTTTTTGTACATGGA 58.457 36.000 0.00 0.00 0.00 3.41
138 142 6.824305 AGGATCTTCTGTTTTTGTACATGG 57.176 37.500 0.00 0.00 0.00 3.66
139 143 7.175641 AGGAAGGATCTTCTGTTTTTGTACATG 59.824 37.037 0.00 0.00 0.00 3.21
140 144 7.234355 AGGAAGGATCTTCTGTTTTTGTACAT 58.766 34.615 0.00 0.00 0.00 2.29
141 145 6.601332 AGGAAGGATCTTCTGTTTTTGTACA 58.399 36.000 7.47 0.00 0.00 2.90
142 146 7.511959 AAGGAAGGATCTTCTGTTTTTGTAC 57.488 36.000 7.47 0.00 0.00 2.90
143 147 8.533569 AAAAGGAAGGATCTTCTGTTTTTGTA 57.466 30.769 7.47 0.00 0.00 2.41
144 148 7.343057 AGAAAAGGAAGGATCTTCTGTTTTTGT 59.657 33.333 15.42 11.71 0.00 2.83
147 151 7.448777 GGTAGAAAAGGAAGGATCTTCTGTTTT 59.551 37.037 14.78 14.78 0.00 2.43
151 155 5.190726 AGGGTAGAAAAGGAAGGATCTTCTG 59.809 44.000 7.47 0.00 0.00 3.02
152 156 5.354848 AGGGTAGAAAAGGAAGGATCTTCT 58.645 41.667 7.47 0.00 0.00 2.85
157 161 4.324331 CGGAAAGGGTAGAAAAGGAAGGAT 60.324 45.833 0.00 0.00 0.00 3.24
158 162 3.008704 CGGAAAGGGTAGAAAAGGAAGGA 59.991 47.826 0.00 0.00 0.00 3.36
159 163 3.344515 CGGAAAGGGTAGAAAAGGAAGG 58.655 50.000 0.00 0.00 0.00 3.46
165 169 4.913784 ACTAATGCGGAAAGGGTAGAAAA 58.086 39.130 0.00 0.00 0.00 2.29
169 173 4.514401 AGAAACTAATGCGGAAAGGGTAG 58.486 43.478 0.00 0.00 0.00 3.18
171 175 3.434940 AGAAACTAATGCGGAAAGGGT 57.565 42.857 0.00 0.00 0.00 4.34
172 176 3.756434 TGAAGAAACTAATGCGGAAAGGG 59.244 43.478 0.00 0.00 0.00 3.95
175 179 5.705441 ACTGATGAAGAAACTAATGCGGAAA 59.295 36.000 0.00 0.00 0.00 3.13
190 200 4.136796 TCACCAACCAAGAACTGATGAAG 58.863 43.478 0.00 0.00 0.00 3.02
194 206 3.256631 GCAATCACCAACCAAGAACTGAT 59.743 43.478 0.00 0.00 0.00 2.90
235 249 1.681264 CATCCATCGCCTAAAAACCCC 59.319 52.381 0.00 0.00 0.00 4.95
239 253 2.285083 CCGACATCCATCGCCTAAAAA 58.715 47.619 0.00 0.00 40.87 1.94
293 307 7.669304 TCACAATCCAATCAAGGTCAAGATAAA 59.331 33.333 0.00 0.00 0.00 1.40
295 309 6.720309 TCACAATCCAATCAAGGTCAAGATA 58.280 36.000 0.00 0.00 0.00 1.98
353 377 3.094484 ACTCAACCAACCAAGGAACAA 57.906 42.857 0.00 0.00 0.00 2.83
374 398 3.452264 AGCAGCATCATAGTGGACTACAA 59.548 43.478 0.00 0.00 0.00 2.41
375 399 3.033909 AGCAGCATCATAGTGGACTACA 58.966 45.455 0.00 0.00 0.00 2.74
400 424 0.322008 GCATCCCCGATCAAGGATCC 60.322 60.000 2.48 2.48 41.05 3.36
436 460 0.814010 GCCAACGTGACCAGTCAACT 60.814 55.000 1.23 0.00 41.85 3.16
439 463 1.227527 CTGCCAACGTGACCAGTCA 60.228 57.895 0.00 0.00 37.24 3.41
440 464 1.227556 ACTGCCAACGTGACCAGTC 60.228 57.895 8.82 0.00 33.57 3.51
441 465 1.523711 CACTGCCAACGTGACCAGT 60.524 57.895 8.82 8.82 38.97 4.00
442 466 1.227527 TCACTGCCAACGTGACCAG 60.228 57.895 7.74 7.74 36.54 4.00
443 467 2.904131 TCACTGCCAACGTGACCA 59.096 55.556 0.00 0.00 36.54 4.02
446 470 0.392706 ATCAGTCACTGCCAACGTGA 59.607 50.000 0.00 0.00 38.94 4.35
447 471 0.514255 CATCAGTCACTGCCAACGTG 59.486 55.000 0.00 0.00 0.00 4.49
448 472 0.106708 ACATCAGTCACTGCCAACGT 59.893 50.000 0.00 0.00 0.00 3.99
449 473 0.792640 GACATCAGTCACTGCCAACG 59.207 55.000 0.00 0.00 44.34 4.10
458 482 3.828451 TCTGTGATCAGTGACATCAGTCA 59.172 43.478 15.22 4.53 44.58 3.41
459 483 4.446994 TCTGTGATCAGTGACATCAGTC 57.553 45.455 15.22 2.31 41.33 3.51
460 484 4.465305 TCATCTGTGATCAGTGACATCAGT 59.535 41.667 15.22 0.00 41.91 3.41
461 485 5.007385 TCATCTGTGATCAGTGACATCAG 57.993 43.478 0.00 4.55 41.91 2.90
462 486 5.609533 ATCATCTGTGATCAGTGACATCA 57.390 39.130 0.00 0.00 41.16 3.07
479 503 4.878397 CCCTAACAAGGTGAACTGATCATC 59.122 45.833 0.00 0.00 40.97 2.92
480 504 4.289672 ACCCTAACAAGGTGAACTGATCAT 59.710 41.667 0.00 0.00 40.97 2.45
481 505 3.650942 ACCCTAACAAGGTGAACTGATCA 59.349 43.478 0.00 0.00 35.85 2.92
482 506 4.020128 AGACCCTAACAAGGTGAACTGATC 60.020 45.833 0.00 0.00 37.88 2.92
483 507 3.910627 AGACCCTAACAAGGTGAACTGAT 59.089 43.478 0.00 0.00 37.88 2.90
484 508 3.314693 AGACCCTAACAAGGTGAACTGA 58.685 45.455 0.00 0.00 37.88 3.41
485 509 3.771577 AGACCCTAACAAGGTGAACTG 57.228 47.619 0.00 0.00 37.88 3.16
486 510 4.225267 CCATAGACCCTAACAAGGTGAACT 59.775 45.833 0.00 0.00 37.88 3.01
487 511 4.019591 ACCATAGACCCTAACAAGGTGAAC 60.020 45.833 0.00 0.00 37.88 3.18
488 512 4.019681 CACCATAGACCCTAACAAGGTGAA 60.020 45.833 0.00 0.00 46.12 3.18
489 513 3.517901 CACCATAGACCCTAACAAGGTGA 59.482 47.826 0.00 0.00 46.12 4.02
490 514 3.873910 CACCATAGACCCTAACAAGGTG 58.126 50.000 0.00 0.00 37.88 4.00
491 515 3.527937 ACACCATAGACCCTAACAAGGT 58.472 45.455 0.00 0.00 41.50 3.50
492 516 4.569719 AACACCATAGACCCTAACAAGG 57.430 45.455 0.00 0.00 0.00 3.61
493 517 5.411669 GTGAAACACCATAGACCCTAACAAG 59.588 44.000 0.00 0.00 36.32 3.16
494 518 5.310451 GTGAAACACCATAGACCCTAACAA 58.690 41.667 0.00 0.00 36.32 2.83
495 519 4.901868 GTGAAACACCATAGACCCTAACA 58.098 43.478 0.00 0.00 36.32 2.41
509 533 3.146066 TCCAATGCACTAGGTGAAACAC 58.854 45.455 1.57 0.00 39.98 3.32
510 534 3.500448 TCCAATGCACTAGGTGAAACA 57.500 42.857 1.57 0.00 39.98 2.83
511 535 4.702131 AGAATCCAATGCACTAGGTGAAAC 59.298 41.667 1.57 0.00 35.23 2.78
512 536 4.701651 CAGAATCCAATGCACTAGGTGAAA 59.298 41.667 1.57 0.00 35.23 2.69
513 537 4.019411 TCAGAATCCAATGCACTAGGTGAA 60.019 41.667 1.57 0.00 35.23 3.18
514 538 3.519107 TCAGAATCCAATGCACTAGGTGA 59.481 43.478 1.57 0.00 35.23 4.02
515 539 3.877559 TCAGAATCCAATGCACTAGGTG 58.122 45.455 0.00 0.00 36.51 4.00
516 540 4.458397 CATCAGAATCCAATGCACTAGGT 58.542 43.478 0.00 0.00 0.00 3.08
517 541 3.252701 GCATCAGAATCCAATGCACTAGG 59.747 47.826 11.18 0.00 44.07 3.02
518 542 4.135306 AGCATCAGAATCCAATGCACTAG 58.865 43.478 16.42 0.00 46.43 2.57
519 543 4.160642 AGCATCAGAATCCAATGCACTA 57.839 40.909 16.42 0.00 46.43 2.74
520 544 3.014304 AGCATCAGAATCCAATGCACT 57.986 42.857 16.42 0.00 46.43 4.40
521 545 3.881688 ACTAGCATCAGAATCCAATGCAC 59.118 43.478 16.42 0.00 46.43 4.57
522 546 4.160642 ACTAGCATCAGAATCCAATGCA 57.839 40.909 16.42 0.00 46.43 3.96
523 547 5.391736 GCATACTAGCATCAGAATCCAATGC 60.392 44.000 8.79 8.79 44.80 3.56
524 548 5.163884 CGCATACTAGCATCAGAATCCAATG 60.164 44.000 0.00 0.00 0.00 2.82
525 549 4.934001 CGCATACTAGCATCAGAATCCAAT 59.066 41.667 0.00 0.00 0.00 3.16
526 550 4.039124 TCGCATACTAGCATCAGAATCCAA 59.961 41.667 0.00 0.00 0.00 3.53
527 551 3.573967 TCGCATACTAGCATCAGAATCCA 59.426 43.478 0.00 0.00 0.00 3.41
528 552 4.179926 TCGCATACTAGCATCAGAATCC 57.820 45.455 0.00 0.00 0.00 3.01
529 553 4.032672 GCATCGCATACTAGCATCAGAATC 59.967 45.833 0.00 0.00 0.00 2.52
530 554 3.931468 GCATCGCATACTAGCATCAGAAT 59.069 43.478 0.00 0.00 0.00 2.40
531 555 3.006217 AGCATCGCATACTAGCATCAGAA 59.994 43.478 0.00 0.00 0.00 3.02
532 556 2.560105 AGCATCGCATACTAGCATCAGA 59.440 45.455 0.00 0.00 0.00 3.27
533 557 2.956913 AGCATCGCATACTAGCATCAG 58.043 47.619 0.00 0.00 0.00 2.90
534 558 4.158394 TCATAGCATCGCATACTAGCATCA 59.842 41.667 0.00 0.00 0.00 3.07
535 559 4.502282 GTCATAGCATCGCATACTAGCATC 59.498 45.833 0.00 0.00 0.00 3.91
536 560 4.428209 GTCATAGCATCGCATACTAGCAT 58.572 43.478 0.00 0.00 0.00 3.79
537 561 3.367395 GGTCATAGCATCGCATACTAGCA 60.367 47.826 0.00 0.00 0.00 3.49
538 562 3.182967 GGTCATAGCATCGCATACTAGC 58.817 50.000 0.00 0.00 0.00 3.42
539 563 4.440839 TGGTCATAGCATCGCATACTAG 57.559 45.455 0.00 0.00 0.00 2.57
540 564 5.885912 TCTATGGTCATAGCATCGCATACTA 59.114 40.000 11.92 0.00 40.37 1.82
541 565 3.969287 ATGGTCATAGCATCGCATACT 57.031 42.857 0.00 0.00 28.87 2.12
542 566 4.800993 GTCTATGGTCATAGCATCGCATAC 59.199 45.833 11.92 1.32 40.37 2.39
543 567 4.142160 GGTCTATGGTCATAGCATCGCATA 60.142 45.833 11.92 0.00 40.37 3.14
544 568 3.368843 GGTCTATGGTCATAGCATCGCAT 60.369 47.826 11.92 0.00 40.37 4.73
545 569 2.029020 GGTCTATGGTCATAGCATCGCA 60.029 50.000 11.92 0.00 40.37 5.10
546 570 2.232452 AGGTCTATGGTCATAGCATCGC 59.768 50.000 11.92 0.00 40.37 4.58
547 571 3.256879 ACAGGTCTATGGTCATAGCATCG 59.743 47.826 11.92 5.04 40.37 3.84
548 572 4.881019 ACAGGTCTATGGTCATAGCATC 57.119 45.455 11.92 6.26 40.37 3.91
549 573 6.077993 TCTTACAGGTCTATGGTCATAGCAT 58.922 40.000 11.92 0.00 40.37 3.79
550 574 5.454966 TCTTACAGGTCTATGGTCATAGCA 58.545 41.667 11.92 0.00 40.37 3.49
551 575 6.209589 TGATCTTACAGGTCTATGGTCATAGC 59.790 42.308 11.92 7.98 40.37 2.97
552 576 7.667635 TCTGATCTTACAGGTCTATGGTCATAG 59.332 40.741 10.80 10.80 38.95 2.23
553 577 7.526918 TCTGATCTTACAGGTCTATGGTCATA 58.473 38.462 0.00 0.00 38.31 2.15
554 578 6.377080 TCTGATCTTACAGGTCTATGGTCAT 58.623 40.000 0.00 0.00 38.31 3.06
587 613 0.686224 AATTGGTTACGACGGACCCA 59.314 50.000 16.84 6.23 34.99 4.51
588 614 1.733912 GAAATTGGTTACGACGGACCC 59.266 52.381 16.84 3.43 34.99 4.46
611 637 5.441718 TCCTAAGTTGAGCCATTCTGAAT 57.558 39.130 0.00 0.00 0.00 2.57
620 646 6.203723 GTGAATATGTGATCCTAAGTTGAGCC 59.796 42.308 0.00 0.00 0.00 4.70
625 652 8.932610 AGAGATGTGAATATGTGATCCTAAGTT 58.067 33.333 0.00 0.00 0.00 2.66
634 661 5.658190 TGACTGGAGAGATGTGAATATGTGA 59.342 40.000 0.00 0.00 0.00 3.58
635 662 5.910614 TGACTGGAGAGATGTGAATATGTG 58.089 41.667 0.00 0.00 0.00 3.21
636 663 6.522946 CATGACTGGAGAGATGTGAATATGT 58.477 40.000 0.00 0.00 0.00 2.29
637 664 5.408909 GCATGACTGGAGAGATGTGAATATG 59.591 44.000 0.00 0.00 0.00 1.78
638 665 5.307456 AGCATGACTGGAGAGATGTGAATAT 59.693 40.000 0.00 0.00 0.00 1.28
639 666 4.652881 AGCATGACTGGAGAGATGTGAATA 59.347 41.667 0.00 0.00 0.00 1.75
640 667 3.455177 AGCATGACTGGAGAGATGTGAAT 59.545 43.478 0.00 0.00 0.00 2.57
641 668 2.836372 AGCATGACTGGAGAGATGTGAA 59.164 45.455 0.00 0.00 0.00 3.18
655 682 8.719560 ATAACATGATGATCATAGAGCATGAC 57.280 34.615 28.47 9.33 46.41 3.06
704 734 3.844577 ACTCATGCTGCAACTTCAATC 57.155 42.857 6.36 0.00 0.00 2.67
781 814 7.288560 AGAGAAGGCAATCAGTCAAATCATAT 58.711 34.615 0.00 0.00 0.00 1.78
788 821 4.890158 TGTAGAGAAGGCAATCAGTCAA 57.110 40.909 0.00 0.00 0.00 3.18
922 961 9.162764 GTAAACCATACATACTGAGTTGTCAAT 57.837 33.333 0.00 0.00 30.14 2.57
1025 1065 6.061022 TGTTCTGGAATTCTATAACCAGCA 57.939 37.500 14.68 0.00 46.36 4.41
1044 1084 5.032863 GCAGCAACATCATTCACTATGTTC 58.967 41.667 0.00 0.00 42.83 3.18
1123 1163 2.233305 TTCCCTACGGCTTCTTCTCT 57.767 50.000 0.00 0.00 0.00 3.10
1141 1181 0.549469 ATCGCGGTTAGGGGGAATTT 59.451 50.000 6.13 0.00 0.00 1.82
1160 1200 2.060275 CATGGAGGAGAATGGATGGGA 58.940 52.381 0.00 0.00 0.00 4.37
1242 1282 6.771188 AAAGTCGTGAGAACTAAGAATGTG 57.229 37.500 0.00 0.00 45.01 3.21
1320 1360 5.533903 GGAGCACAATATCTCCACATCATTT 59.466 40.000 3.60 0.00 46.24 2.32
1321 1361 5.068636 GGAGCACAATATCTCCACATCATT 58.931 41.667 3.60 0.00 46.24 2.57
1322 1362 4.649692 GGAGCACAATATCTCCACATCAT 58.350 43.478 3.60 0.00 46.24 2.45
1329 1369 1.490490 TGGTGGGAGCACAATATCTCC 59.510 52.381 0.00 0.00 46.25 3.71
1330 1370 2.435805 TCTGGTGGGAGCACAATATCTC 59.564 50.000 0.00 0.00 0.00 2.75
1331 1371 2.171448 GTCTGGTGGGAGCACAATATCT 59.829 50.000 0.00 0.00 0.00 1.98
1332 1372 2.171448 AGTCTGGTGGGAGCACAATATC 59.829 50.000 0.00 0.00 0.00 1.63
1334 1374 1.656587 AGTCTGGTGGGAGCACAATA 58.343 50.000 0.00 0.00 0.00 1.90
1335 1375 0.773644 AAGTCTGGTGGGAGCACAAT 59.226 50.000 0.00 0.00 0.00 2.71
1336 1376 0.179020 CAAGTCTGGTGGGAGCACAA 60.179 55.000 0.00 0.00 0.00 3.33
1338 1378 1.302832 CCAAGTCTGGTGGGAGCAC 60.303 63.158 0.00 0.00 38.00 4.40
1339 1379 1.059584 TTCCAAGTCTGGTGGGAGCA 61.060 55.000 0.00 0.00 43.97 4.26
1340 1380 0.329596 ATTCCAAGTCTGGTGGGAGC 59.670 55.000 0.00 0.00 43.97 4.70
1341 1381 2.887151 AATTCCAAGTCTGGTGGGAG 57.113 50.000 0.00 0.00 43.97 4.30
1383 1450 1.600957 CCTTTGCTGGCACATATCGAG 59.399 52.381 0.00 0.00 38.20 4.04
1457 1524 2.162906 AAGCTTCCAAGAGCCCCCA 61.163 57.895 0.00 0.00 43.74 4.96
1620 1687 2.771943 TGAACTTGTCTTCTGTGTCCCT 59.228 45.455 0.00 0.00 0.00 4.20
1664 1732 4.210955 CCCAAATTCAACCAAATCAACGTG 59.789 41.667 0.00 0.00 0.00 4.49
1705 1774 2.931325 CACATGCAGCAACAGTTTGTTT 59.069 40.909 0.00 0.00 38.77 2.83
1724 1793 0.321671 TGCCTTGCAGAGACCTACAC 59.678 55.000 0.00 0.00 33.32 2.90
1811 1880 4.457603 CCAAAGGTGTCGATTCCAAATACA 59.542 41.667 10.61 0.00 0.00 2.29
1900 1970 2.161855 TGCACTACAAAGATGCCCTTG 58.838 47.619 0.00 0.00 38.63 3.61
1927 1997 0.965439 CCGAGAAGAGGCCTCCTATG 59.035 60.000 29.54 15.05 31.76 2.23
1937 2007 0.456995 GACAGAACCGCCGAGAAGAG 60.457 60.000 0.00 0.00 0.00 2.85
1957 2027 3.564264 AGTATAAACCCGACCCTCTCTC 58.436 50.000 0.00 0.00 0.00 3.20
2022 2092 4.194720 GAGGCTCGACATCGGCGT 62.195 66.667 6.85 5.66 40.29 5.68
2056 2126 3.667960 GCGCAACAAGTACATTCTCAAGG 60.668 47.826 0.30 0.00 0.00 3.61
2108 2178 0.546598 GTGGGCTGGTAGGCTAACAT 59.453 55.000 13.60 0.00 41.09 2.71
2195 2265 9.643693 GACATCAAGAATGGTTGTTCAATTATT 57.356 29.630 0.00 0.00 39.90 1.40
2231 2301 2.094700 ACACCGACCTGCATATATAGCG 60.095 50.000 0.00 0.00 33.85 4.26
2294 2364 1.961277 CGCCCTCGCTGTTCTTGTT 60.961 57.895 0.00 0.00 0.00 2.83
2337 2407 3.564027 GCCTTGCGTCGATTCCCG 61.564 66.667 0.00 0.00 40.25 5.14
2345 2415 1.237285 ATTGACACTGGCCTTGCGTC 61.237 55.000 3.32 7.39 0.00 5.19
2430 2501 2.592308 CCTAGGCAGCCTTGGACC 59.408 66.667 32.34 0.00 46.83 4.46
2583 2654 3.522553 CTGCAAGCCTAGGTTGTAGTAC 58.477 50.000 22.33 10.42 44.36 2.73
2584 2655 2.500098 CCTGCAAGCCTAGGTTGTAGTA 59.500 50.000 25.43 10.53 46.58 1.82
2585 2656 1.279271 CCTGCAAGCCTAGGTTGTAGT 59.721 52.381 25.43 2.58 46.58 2.73
2611 2682 7.119699 GGAGTACAAGTTCACATGATTCATTCA 59.880 37.037 0.00 0.00 39.12 2.57
2621 2692 2.233922 CGGAGGGAGTACAAGTTCACAT 59.766 50.000 0.00 0.00 0.00 3.21
2625 2696 4.219288 TCTTTACGGAGGGAGTACAAGTTC 59.781 45.833 0.00 0.00 0.00 3.01
2630 2701 8.537728 TTATATTTCTTTACGGAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
2631 2702 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2632 2703 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
2633 2704 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2634 2705 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2635 2706 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2636 2707 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2637 2708 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2638 2709 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2639 2710 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2640 2711 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2652 2723 9.122779 ACTACTTAGTGATCTAAACGCTCTTAT 57.877 33.333 0.00 0.00 35.98 1.73
2653 2724 8.503458 ACTACTTAGTGATCTAAACGCTCTTA 57.497 34.615 0.00 0.00 35.98 2.10
2654 2725 7.393841 ACTACTTAGTGATCTAAACGCTCTT 57.606 36.000 0.00 0.00 35.98 2.85
2669 2740 7.393841 AAGAGCGTTTAGATCACTACTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2685 2756 9.930693 CCCTCTATAAAGAAATATAAGAGCGTT 57.069 33.333 0.00 0.00 0.00 4.84
2686 2757 9.310449 TCCCTCTATAAAGAAATATAAGAGCGT 57.690 33.333 0.00 0.00 0.00 5.07
2687 2758 9.796120 CTCCCTCTATAAAGAAATATAAGAGCG 57.204 37.037 0.00 0.00 0.00 5.03
2695 2766 9.377238 GGGTTCTACTCCCTCTATAAAGAAATA 57.623 37.037 0.00 0.00 41.58 1.40
2696 2767 7.849904 TGGGTTCTACTCCCTCTATAAAGAAAT 59.150 37.037 2.65 0.00 44.84 2.17
2697 2768 7.194050 TGGGTTCTACTCCCTCTATAAAGAAA 58.806 38.462 2.65 0.00 44.84 2.52
2698 2769 6.748969 TGGGTTCTACTCCCTCTATAAAGAA 58.251 40.000 2.65 0.00 44.84 2.52
2699 2770 6.351317 TGGGTTCTACTCCCTCTATAAAGA 57.649 41.667 2.65 0.00 44.84 2.52
2700 2771 6.612049 AGTTGGGTTCTACTCCCTCTATAAAG 59.388 42.308 2.65 0.00 44.84 1.85
2701 2772 6.509386 AGTTGGGTTCTACTCCCTCTATAAA 58.491 40.000 2.65 0.00 44.84 1.40
2702 2773 6.101274 AGTTGGGTTCTACTCCCTCTATAA 57.899 41.667 2.65 0.00 44.84 0.98
2703 2774 5.745988 AGTTGGGTTCTACTCCCTCTATA 57.254 43.478 2.65 0.00 44.84 1.31
2704 2775 4.628661 AGTTGGGTTCTACTCCCTCTAT 57.371 45.455 2.65 0.00 44.84 1.98
2705 2776 5.745988 ATAGTTGGGTTCTACTCCCTCTA 57.254 43.478 2.65 5.95 44.84 2.43
2706 2777 4.628661 ATAGTTGGGTTCTACTCCCTCT 57.371 45.455 2.65 4.17 44.84 3.69
2707 2778 4.715297 TGAATAGTTGGGTTCTACTCCCTC 59.285 45.833 2.65 0.00 44.84 4.30
2708 2779 4.695606 TGAATAGTTGGGTTCTACTCCCT 58.304 43.478 2.65 0.00 44.84 4.20
2709 2780 5.367060 AGATGAATAGTTGGGTTCTACTCCC 59.633 44.000 0.00 0.00 44.81 4.30
2710 2781 6.487299 AGATGAATAGTTGGGTTCTACTCC 57.513 41.667 0.00 0.00 31.77 3.85
2711 2782 7.331791 ACAAGATGAATAGTTGGGTTCTACTC 58.668 38.462 0.00 0.00 31.77 2.59
2712 2783 7.038302 TGACAAGATGAATAGTTGGGTTCTACT 60.038 37.037 0.00 0.00 33.76 2.57
2717 2788 6.777580 ACTTTGACAAGATGAATAGTTGGGTT 59.222 34.615 0.00 0.00 33.72 4.11
2732 2803 8.993121 ACATCTACATTTGAGTACTTTGACAAG 58.007 33.333 0.00 0.00 35.92 3.16
2736 2808 9.371136 GATCACATCTACATTTGAGTACTTTGA 57.629 33.333 0.00 0.00 0.00 2.69
2746 2818 5.277202 CCAAGAGCGATCACATCTACATTTG 60.277 44.000 2.38 0.00 0.00 2.32
2754 2826 3.002791 TGAAACCAAGAGCGATCACATC 58.997 45.455 2.38 0.00 0.00 3.06
2791 2863 3.793060 AGGACACCCTGGTTCTCG 58.207 61.111 0.00 0.00 42.42 4.04
2810 2882 3.056328 GGCGACCAACTTGGGAGC 61.056 66.667 12.62 15.11 43.37 4.70
2846 2918 2.036346 GGCTGATCTGCACAAACCTTTT 59.964 45.455 23.84 0.00 34.04 2.27
2899 2971 1.610554 CCGTATGAGACACCCCCGTT 61.611 60.000 0.00 0.00 0.00 4.44
2902 2974 0.107848 CAACCGTATGAGACACCCCC 60.108 60.000 0.00 0.00 0.00 5.40
2938 3010 2.159382 CCTCCAAATGCGTACACCTTT 58.841 47.619 0.00 0.00 0.00 3.11
2950 3022 1.604378 CGAGCCACCTCCTCCAAAT 59.396 57.895 0.00 0.00 34.49 2.32
3029 3101 2.156098 GAGGAACTAGGCGAGATCGAT 58.844 52.381 6.39 0.00 41.55 3.59
3055 3127 0.610232 AAGGTGTTCCAGGCAGATGC 60.610 55.000 0.00 0.00 36.86 3.91
3057 3129 1.067295 TGAAGGTGTTCCAGGCAGAT 58.933 50.000 0.00 0.00 35.89 2.90
3058 3130 1.067295 ATGAAGGTGTTCCAGGCAGA 58.933 50.000 0.00 0.00 35.89 4.26
3060 3132 1.985159 AGTATGAAGGTGTTCCAGGCA 59.015 47.619 0.00 0.00 35.89 4.75
3061 3133 2.290323 ACAGTATGAAGGTGTTCCAGGC 60.290 50.000 0.00 0.00 39.69 4.85
3062 3134 3.703001 ACAGTATGAAGGTGTTCCAGG 57.297 47.619 0.00 0.00 39.69 4.45
3063 3135 5.147330 TGTACAGTATGAAGGTGTTCCAG 57.853 43.478 0.00 0.00 39.69 3.86
3064 3136 4.020573 CCTGTACAGTATGAAGGTGTTCCA 60.021 45.833 21.18 0.00 39.69 3.53
3065 3137 4.504858 CCTGTACAGTATGAAGGTGTTCC 58.495 47.826 21.18 0.00 39.69 3.62
3066 3138 4.222145 TCCCTGTACAGTATGAAGGTGTTC 59.778 45.833 21.18 0.00 39.69 3.18
3067 3139 4.164981 TCCCTGTACAGTATGAAGGTGTT 58.835 43.478 21.18 0.00 39.69 3.32
3068 3140 3.769844 CTCCCTGTACAGTATGAAGGTGT 59.230 47.826 21.18 0.00 39.69 4.16
3069 3141 4.023980 TCTCCCTGTACAGTATGAAGGTG 58.976 47.826 21.18 13.93 39.69 4.00
3070 3142 4.332683 TCTCCCTGTACAGTATGAAGGT 57.667 45.455 21.18 0.00 39.69 3.50
3071 3143 5.422331 TCTTTCTCCCTGTACAGTATGAAGG 59.578 44.000 21.18 18.66 39.69 3.46
3084 3156 3.157881 GGGGTTTCTTTCTTTCTCCCTG 58.842 50.000 0.00 0.00 34.44 4.45
3132 3204 3.250040 CCAAGGGTCAAAACACTAGAACG 59.750 47.826 0.00 0.00 38.55 3.95
3133 3205 4.204799 ACCAAGGGTCAAAACACTAGAAC 58.795 43.478 0.00 0.00 38.55 3.01
3134 3206 4.513406 ACCAAGGGTCAAAACACTAGAA 57.487 40.909 0.00 0.00 38.55 2.10
3136 3208 3.317993 CCAACCAAGGGTCAAAACACTAG 59.682 47.826 0.00 0.00 38.55 2.57
3138 3210 2.107366 CCAACCAAGGGTCAAAACACT 58.893 47.619 0.00 0.00 42.47 3.55
3139 3211 1.828595 ACCAACCAAGGGTCAAAACAC 59.171 47.619 0.00 0.00 33.12 3.32
3140 3212 2.239681 ACCAACCAAGGGTCAAAACA 57.760 45.000 0.00 0.00 33.12 2.83
3141 3213 3.702548 AGTAACCAACCAAGGGTCAAAAC 59.297 43.478 0.00 0.00 37.77 2.43
3142 3214 3.983821 AGTAACCAACCAAGGGTCAAAA 58.016 40.909 0.00 0.00 37.77 2.44
3143 3215 3.673543 AGTAACCAACCAAGGGTCAAA 57.326 42.857 0.00 0.00 37.77 2.69
3144 3216 3.673543 AAGTAACCAACCAAGGGTCAA 57.326 42.857 0.00 0.00 37.77 3.18
3145 3217 3.673543 AAAGTAACCAACCAAGGGTCA 57.326 42.857 0.00 0.00 37.77 4.02
3173 3245 6.157297 TCATGGCATCATCATATATCTGTCCA 59.843 38.462 0.00 0.00 0.00 4.02
3199 3271 4.456566 TCGGTTCAGTTTAAAGCCCATAAC 59.543 41.667 0.00 0.00 0.00 1.89
3207 3279 7.587757 CAGTTGAGATTTCGGTTCAGTTTAAAG 59.412 37.037 0.00 0.00 0.00 1.85
3288 3361 9.933723 CTTTTCCTTCTTTTAATTGATGGATGT 57.066 29.630 11.15 0.00 36.72 3.06
3409 3484 0.108329 AAGTACCGGTTCATGCTCCG 60.108 55.000 15.04 17.34 45.42 4.63
3424 3499 4.573201 CGTTGACCACCTTTTCTTCAAGTA 59.427 41.667 0.00 0.00 0.00 2.24
3438 3513 2.548057 TGAGATCAAAAGCGTTGACCAC 59.452 45.455 7.88 0.00 0.00 4.16
3461 3536 2.876550 GGTTTCTGTCCGCTTTGTAAGT 59.123 45.455 0.00 0.00 0.00 2.24
3465 3540 2.317230 CGGTTTCTGTCCGCTTTGT 58.683 52.632 0.00 0.00 41.48 2.83
3481 3556 4.974721 AGGGTGGCCAACTTGCGG 62.975 66.667 22.79 0.00 0.00 5.69
3487 3562 2.736531 CAAGCAAGGGTGGCCAAC 59.263 61.111 14.15 14.15 0.00 3.77
3507 3582 1.529152 TTTGGAGCGGCGACAGACTA 61.529 55.000 12.98 0.00 0.00 2.59
3520 3595 5.701750 TGTCCATTCAAAATTGCATTTGGAG 59.298 36.000 11.79 3.94 40.04 3.86
3530 3605 4.942852 TGCTCGTTTGTCCATTCAAAATT 58.057 34.783 0.00 0.00 38.71 1.82
3605 3680 4.022589 CGCAATTCCTTATGCCATCAGATT 60.023 41.667 0.00 0.00 39.39 2.40
3624 3699 2.611971 CCTCCGCTTATATAAGGCGCAA 60.612 50.000 21.30 14.31 34.16 4.85
3663 3738 5.120830 ACATCACTTGAAAGCATACGACTTC 59.879 40.000 0.00 0.00 0.00 3.01
3677 3752 3.580022 ACACTGAGGATGACATCACTTGA 59.420 43.478 17.08 3.17 33.27 3.02
3726 3801 5.574970 AGGTCATTCCTCTTTGGGATATC 57.425 43.478 0.00 0.00 44.42 1.63
3732 3807 6.209391 ACATTTGTTAGGTCATTCCTCTTTGG 59.791 38.462 0.00 0.00 44.42 3.28
3774 3849 5.963586 GCTATCAAAAATTAAACTCCCGTCG 59.036 40.000 0.00 0.00 0.00 5.12
3783 3858 6.326323 GGATGAGGGGGCTATCAAAAATTAAA 59.674 38.462 0.00 0.00 0.00 1.52
3838 3913 2.492088 GTTTGTTTATGAGGCCTCCACC 59.508 50.000 29.95 13.32 0.00 4.61
3932 4007 8.579850 TTGATTTATTCTATGCTTCCACTGTT 57.420 30.769 0.00 0.00 0.00 3.16
3935 4010 7.349598 ACCTTGATTTATTCTATGCTTCCACT 58.650 34.615 0.00 0.00 0.00 4.00
3962 4037 1.300620 CAACCCTTGCGACGAGACA 60.301 57.895 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.