Multiple sequence alignment - TraesCS2D01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G334000 chr2D 100.000 2531 0 0 1 2531 427577515 427574985 0.000000e+00 4674.0
1 TraesCS2D01G334000 chr2B 89.950 1801 124 26 305 2070 504475119 504473341 0.000000e+00 2270.0
2 TraesCS2D01G334000 chr2B 93.564 202 9 1 2330 2531 504472935 504472738 5.290000e-77 298.0
3 TraesCS2D01G334000 chr2B 88.492 252 12 6 2070 2304 504473182 504472931 3.190000e-74 289.0
4 TraesCS2D01G334000 chr2A 89.171 1302 80 25 498 1753 560771482 560772768 0.000000e+00 1567.0
5 TraesCS2D01G334000 chr2A 75.288 607 51 40 1964 2531 560773902 560774448 5.520000e-47 198.0
6 TraesCS2D01G334000 chr3B 78.767 146 22 9 561 701 756199554 756199413 3.470000e-14 89.8
7 TraesCS2D01G334000 chr7A 80.531 113 20 2 520 630 620632652 620632764 4.490000e-13 86.1
8 TraesCS2D01G334000 chr1A 89.474 57 6 0 328 384 460936521 460936577 3.490000e-09 73.1
9 TraesCS2D01G334000 chr4D 96.970 33 1 0 356 388 10644066 10644034 3.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G334000 chr2D 427574985 427577515 2530 True 4674.000000 4674 100.000000 1 2531 1 chr2D.!!$R1 2530
1 TraesCS2D01G334000 chr2B 504472738 504475119 2381 True 952.333333 2270 90.668667 305 2531 3 chr2B.!!$R1 2226
2 TraesCS2D01G334000 chr2A 560771482 560774448 2966 False 882.500000 1567 82.229500 498 2531 2 chr2A.!!$F1 2033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.032952 ACGTATGGCGCGTTATCCAT 59.967 50.0 18.07 18.07 46.11 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1598 0.517316 GCGCAGTCCACAGTTAAAGG 59.483 55.0 0.3 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.682372 GAGCGAAAGATGGCTTAAAGG 57.318 47.619 0.00 0.00 41.08 3.11
21 22 3.270877 GAGCGAAAGATGGCTTAAAGGA 58.729 45.455 0.00 0.00 41.08 3.36
22 23 3.879892 GAGCGAAAGATGGCTTAAAGGAT 59.120 43.478 0.00 0.00 41.08 3.24
23 24 3.879892 AGCGAAAGATGGCTTAAAGGATC 59.120 43.478 0.00 0.00 37.31 3.36
24 25 3.879892 GCGAAAGATGGCTTAAAGGATCT 59.120 43.478 0.00 0.00 32.98 2.75
25 26 4.260948 GCGAAAGATGGCTTAAAGGATCTG 60.261 45.833 0.00 0.00 32.98 2.90
26 27 5.118990 CGAAAGATGGCTTAAAGGATCTGA 58.881 41.667 0.00 0.00 32.98 3.27
27 28 5.236047 CGAAAGATGGCTTAAAGGATCTGAG 59.764 44.000 0.00 0.00 32.98 3.35
28 29 5.965033 AAGATGGCTTAAAGGATCTGAGA 57.035 39.130 0.00 0.00 31.07 3.27
29 30 5.549742 AGATGGCTTAAAGGATCTGAGAG 57.450 43.478 0.00 0.00 0.00 3.20
30 31 3.550437 TGGCTTAAAGGATCTGAGAGC 57.450 47.619 0.00 0.00 0.00 4.09
31 32 2.840038 TGGCTTAAAGGATCTGAGAGCA 59.160 45.455 0.00 0.00 0.00 4.26
32 33 3.457380 TGGCTTAAAGGATCTGAGAGCAT 59.543 43.478 0.00 0.00 0.00 3.79
33 34 4.080129 TGGCTTAAAGGATCTGAGAGCATT 60.080 41.667 0.00 0.00 0.00 3.56
34 35 4.886489 GGCTTAAAGGATCTGAGAGCATTT 59.114 41.667 14.74 14.74 36.08 2.32
35 36 5.359292 GGCTTAAAGGATCTGAGAGCATTTT 59.641 40.000 15.53 9.66 34.07 1.82
36 37 6.543831 GGCTTAAAGGATCTGAGAGCATTTTA 59.456 38.462 15.53 6.04 34.07 1.52
37 38 7.230309 GGCTTAAAGGATCTGAGAGCATTTTAT 59.770 37.037 15.53 0.00 34.07 1.40
38 39 8.074972 GCTTAAAGGATCTGAGAGCATTTTATG 58.925 37.037 15.53 13.11 34.07 1.90
39 40 9.118300 CTTAAAGGATCTGAGAGCATTTTATGT 57.882 33.333 15.53 0.00 34.07 2.29
40 41 7.951347 AAAGGATCTGAGAGCATTTTATGTT 57.049 32.000 4.38 0.00 27.65 2.71
41 42 7.951347 AAGGATCTGAGAGCATTTTATGTTT 57.049 32.000 0.00 0.00 0.00 2.83
42 43 7.951347 AGGATCTGAGAGCATTTTATGTTTT 57.049 32.000 0.00 0.00 0.00 2.43
43 44 7.994194 AGGATCTGAGAGCATTTTATGTTTTC 58.006 34.615 0.00 0.00 0.00 2.29
44 45 7.067981 AGGATCTGAGAGCATTTTATGTTTTCC 59.932 37.037 0.00 0.00 0.00 3.13
45 46 7.067981 GGATCTGAGAGCATTTTATGTTTTCCT 59.932 37.037 0.00 0.00 0.00 3.36
46 47 7.149569 TCTGAGAGCATTTTATGTTTTCCTG 57.850 36.000 0.00 0.00 0.00 3.86
47 48 6.716628 TCTGAGAGCATTTTATGTTTTCCTGT 59.283 34.615 0.00 0.00 0.00 4.00
48 49 6.680810 TGAGAGCATTTTATGTTTTCCTGTG 58.319 36.000 0.00 0.00 0.00 3.66
49 50 6.265196 TGAGAGCATTTTATGTTTTCCTGTGT 59.735 34.615 0.00 0.00 0.00 3.72
50 51 7.054491 AGAGCATTTTATGTTTTCCTGTGTT 57.946 32.000 0.00 0.00 0.00 3.32
51 52 7.500141 AGAGCATTTTATGTTTTCCTGTGTTT 58.500 30.769 0.00 0.00 0.00 2.83
52 53 8.637986 AGAGCATTTTATGTTTTCCTGTGTTTA 58.362 29.630 0.00 0.00 0.00 2.01
53 54 8.816640 AGCATTTTATGTTTTCCTGTGTTTAG 57.183 30.769 0.00 0.00 0.00 1.85
54 55 8.637986 AGCATTTTATGTTTTCCTGTGTTTAGA 58.362 29.630 0.00 0.00 0.00 2.10
55 56 8.915654 GCATTTTATGTTTTCCTGTGTTTAGAG 58.084 33.333 0.00 0.00 0.00 2.43
56 57 8.915654 CATTTTATGTTTTCCTGTGTTTAGAGC 58.084 33.333 0.00 0.00 0.00 4.09
57 58 4.749245 ATGTTTTCCTGTGTTTAGAGCG 57.251 40.909 0.00 0.00 0.00 5.03
58 59 3.799366 TGTTTTCCTGTGTTTAGAGCGA 58.201 40.909 0.00 0.00 0.00 4.93
59 60 3.558418 TGTTTTCCTGTGTTTAGAGCGAC 59.442 43.478 0.00 0.00 0.00 5.19
60 61 3.746045 TTTCCTGTGTTTAGAGCGACT 57.254 42.857 0.00 0.00 0.00 4.18
61 62 3.746045 TTCCTGTGTTTAGAGCGACTT 57.254 42.857 0.00 0.00 0.00 3.01
62 63 3.746045 TCCTGTGTTTAGAGCGACTTT 57.254 42.857 0.00 0.00 0.00 2.66
63 64 3.390135 TCCTGTGTTTAGAGCGACTTTG 58.610 45.455 0.00 0.00 0.00 2.77
64 65 3.131396 CCTGTGTTTAGAGCGACTTTGT 58.869 45.455 0.00 0.00 0.00 2.83
65 66 3.184581 CCTGTGTTTAGAGCGACTTTGTC 59.815 47.826 0.00 0.00 0.00 3.18
66 67 4.051922 CTGTGTTTAGAGCGACTTTGTCT 58.948 43.478 0.00 0.00 0.00 3.41
67 68 5.190992 TGTGTTTAGAGCGACTTTGTCTA 57.809 39.130 0.00 0.00 0.00 2.59
68 69 5.779922 TGTGTTTAGAGCGACTTTGTCTAT 58.220 37.500 0.00 0.00 0.00 1.98
69 70 6.916440 TGTGTTTAGAGCGACTTTGTCTATA 58.084 36.000 0.00 0.00 0.00 1.31
70 71 7.027760 TGTGTTTAGAGCGACTTTGTCTATAG 58.972 38.462 0.00 0.00 0.00 1.31
71 72 7.094506 TGTGTTTAGAGCGACTTTGTCTATAGA 60.095 37.037 0.00 0.00 0.00 1.98
72 73 7.754027 GTGTTTAGAGCGACTTTGTCTATAGAA 59.246 37.037 3.40 0.00 0.00 2.10
73 74 8.301720 TGTTTAGAGCGACTTTGTCTATAGAAA 58.698 33.333 3.40 0.00 0.00 2.52
74 75 9.303537 GTTTAGAGCGACTTTGTCTATAGAAAT 57.696 33.333 3.40 0.00 0.00 2.17
75 76 9.871238 TTTAGAGCGACTTTGTCTATAGAAATT 57.129 29.630 3.40 0.00 0.00 1.82
78 79 9.469807 AGAGCGACTTTGTCTATAGAAATTATG 57.530 33.333 3.40 0.00 0.00 1.90
79 80 9.464714 GAGCGACTTTGTCTATAGAAATTATGA 57.535 33.333 3.40 0.00 0.00 2.15
80 81 9.817809 AGCGACTTTGTCTATAGAAATTATGAA 57.182 29.630 3.40 0.00 0.00 2.57
113 114 6.522946 AGGAAATACTTCTATTTAGTCGGCC 58.477 40.000 0.00 0.00 33.44 6.13
114 115 6.099269 AGGAAATACTTCTATTTAGTCGGCCA 59.901 38.462 2.24 0.00 33.44 5.36
115 116 6.764560 GGAAATACTTCTATTTAGTCGGCCAA 59.235 38.462 2.24 0.00 33.44 4.52
116 117 7.444487 GGAAATACTTCTATTTAGTCGGCCAAT 59.556 37.037 2.24 0.00 33.44 3.16
117 118 8.747538 AAATACTTCTATTTAGTCGGCCAATT 57.252 30.769 2.24 0.00 31.80 2.32
118 119 7.730364 ATACTTCTATTTAGTCGGCCAATTG 57.270 36.000 2.24 0.00 0.00 2.32
119 120 4.881850 ACTTCTATTTAGTCGGCCAATTGG 59.118 41.667 20.81 20.81 38.53 3.16
120 121 3.815809 TCTATTTAGTCGGCCAATTGGG 58.184 45.455 25.73 10.40 40.85 4.12
130 131 2.254051 CAATTGGGCGCGAAACGT 59.746 55.556 12.10 0.00 46.11 3.99
131 132 1.498166 CAATTGGGCGCGAAACGTA 59.502 52.632 12.10 0.00 46.11 3.57
132 133 0.098025 CAATTGGGCGCGAAACGTAT 59.902 50.000 12.10 0.00 46.11 3.06
133 134 0.098025 AATTGGGCGCGAAACGTATG 59.902 50.000 12.10 0.00 46.11 2.39
134 135 1.711060 ATTGGGCGCGAAACGTATGG 61.711 55.000 12.10 0.00 46.11 2.74
135 136 4.232248 GGGCGCGAAACGTATGGC 62.232 66.667 12.10 0.00 46.11 4.40
139 140 3.845472 GCGAAACGTATGGCGCGT 61.845 61.111 8.43 0.00 46.11 6.01
144 145 4.331356 ACGTATGGCGCGTTATCC 57.669 55.556 8.43 0.00 46.11 2.59
145 146 1.438399 ACGTATGGCGCGTTATCCA 59.562 52.632 8.43 6.84 46.11 3.41
146 147 0.032952 ACGTATGGCGCGTTATCCAT 59.967 50.000 18.07 18.07 46.11 3.41
147 148 0.438445 CGTATGGCGCGTTATCCATG 59.562 55.000 21.65 6.38 42.62 3.66
148 149 1.508632 GTATGGCGCGTTATCCATGT 58.491 50.000 21.65 4.43 42.62 3.21
149 150 1.194547 GTATGGCGCGTTATCCATGTG 59.805 52.381 21.65 0.00 42.62 3.21
150 151 1.785041 ATGGCGCGTTATCCATGTGC 61.785 55.000 14.16 0.00 45.87 4.57
151 152 2.327940 GCGCGTTATCCATGTGCC 59.672 61.111 8.43 0.00 41.45 5.01
152 153 2.625906 CGCGTTATCCATGTGCCG 59.374 61.111 0.00 0.00 0.00 5.69
153 154 2.327940 GCGTTATCCATGTGCCGC 59.672 61.111 0.00 0.00 0.00 6.53
154 155 2.468670 GCGTTATCCATGTGCCGCA 61.469 57.895 0.00 0.00 40.72 5.69
155 156 1.785041 GCGTTATCCATGTGCCGCAT 61.785 55.000 0.00 0.00 40.72 4.73
162 163 4.429522 ATGTGCCGCATGCCCTGA 62.430 61.111 13.15 0.00 40.16 3.86
166 167 4.783621 GCCGCATGCCCTGACTGA 62.784 66.667 13.15 0.00 0.00 3.41
167 168 2.046023 CCGCATGCCCTGACTGAA 60.046 61.111 13.15 0.00 0.00 3.02
168 169 1.452651 CCGCATGCCCTGACTGAAT 60.453 57.895 13.15 0.00 0.00 2.57
169 170 1.442526 CCGCATGCCCTGACTGAATC 61.443 60.000 13.15 0.00 0.00 2.52
170 171 0.745486 CGCATGCCCTGACTGAATCA 60.745 55.000 13.15 0.00 35.45 2.57
171 172 1.688772 GCATGCCCTGACTGAATCAT 58.311 50.000 6.36 0.00 36.48 2.45
172 173 1.607628 GCATGCCCTGACTGAATCATC 59.392 52.381 6.36 0.00 36.48 2.92
173 174 2.748798 GCATGCCCTGACTGAATCATCT 60.749 50.000 6.36 0.00 36.48 2.90
174 175 3.495629 GCATGCCCTGACTGAATCATCTA 60.496 47.826 6.36 0.00 36.48 1.98
175 176 3.827008 TGCCCTGACTGAATCATCTAC 57.173 47.619 0.00 0.00 36.48 2.59
176 177 3.378512 TGCCCTGACTGAATCATCTACT 58.621 45.455 0.00 0.00 36.48 2.57
177 178 4.546674 TGCCCTGACTGAATCATCTACTA 58.453 43.478 0.00 0.00 36.48 1.82
178 179 4.342378 TGCCCTGACTGAATCATCTACTAC 59.658 45.833 0.00 0.00 36.48 2.73
179 180 4.342378 GCCCTGACTGAATCATCTACTACA 59.658 45.833 0.00 0.00 36.48 2.74
180 181 5.011533 GCCCTGACTGAATCATCTACTACAT 59.988 44.000 0.00 0.00 36.48 2.29
181 182 6.209589 GCCCTGACTGAATCATCTACTACATA 59.790 42.308 0.00 0.00 36.48 2.29
182 183 7.093552 GCCCTGACTGAATCATCTACTACATAT 60.094 40.741 0.00 0.00 36.48 1.78
183 184 8.465999 CCCTGACTGAATCATCTACTACATATC 58.534 40.741 0.00 0.00 36.48 1.63
184 185 9.241919 CCTGACTGAATCATCTACTACATATCT 57.758 37.037 0.00 0.00 36.48 1.98
186 187 9.579932 TGACTGAATCATCTACTACATATCTGT 57.420 33.333 0.00 0.00 34.00 3.41
189 190 9.138062 CTGAATCATCTACTACATATCTGTTGC 57.862 37.037 0.00 0.00 36.79 4.17
190 191 8.864087 TGAATCATCTACTACATATCTGTTGCT 58.136 33.333 0.00 0.00 36.79 3.91
191 192 9.138062 GAATCATCTACTACATATCTGTTGCTG 57.862 37.037 0.00 0.00 36.79 4.41
192 193 6.450545 TCATCTACTACATATCTGTTGCTGC 58.549 40.000 0.00 0.00 36.79 5.25
193 194 5.852282 TCTACTACATATCTGTTGCTGCA 57.148 39.130 0.00 0.00 36.79 4.41
194 195 6.220726 TCTACTACATATCTGTTGCTGCAA 57.779 37.500 11.69 11.69 36.79 4.08
195 196 6.276091 TCTACTACATATCTGTTGCTGCAAG 58.724 40.000 16.53 5.04 36.79 4.01
196 197 5.089970 ACTACATATCTGTTGCTGCAAGA 57.910 39.130 16.53 14.04 36.79 3.02
197 198 5.678583 ACTACATATCTGTTGCTGCAAGAT 58.321 37.500 16.53 17.41 36.79 2.40
198 199 4.895224 ACATATCTGTTGCTGCAAGATG 57.105 40.909 21.35 15.25 28.18 2.90
199 200 4.520179 ACATATCTGTTGCTGCAAGATGA 58.480 39.130 21.35 16.72 28.18 2.92
200 201 4.575236 ACATATCTGTTGCTGCAAGATGAG 59.425 41.667 21.35 16.45 28.18 2.90
201 202 1.162698 TCTGTTGCTGCAAGATGAGC 58.837 50.000 16.53 3.32 34.07 4.26
202 203 0.179197 CTGTTGCTGCAAGATGAGCG 60.179 55.000 16.53 0.00 38.09 5.03
203 204 1.136147 GTTGCTGCAAGATGAGCGG 59.864 57.895 16.53 0.00 38.09 5.52
204 205 1.003476 TTGCTGCAAGATGAGCGGA 60.003 52.632 11.69 0.00 40.83 5.54
205 206 1.300971 TTGCTGCAAGATGAGCGGAC 61.301 55.000 11.69 0.00 40.83 4.79
206 207 2.806856 GCTGCAAGATGAGCGGACG 61.807 63.158 0.00 0.00 40.83 4.79
207 208 2.806856 CTGCAAGATGAGCGGACGC 61.807 63.158 8.91 8.91 40.83 5.19
208 209 2.815211 GCAAGATGAGCGGACGCA 60.815 61.111 19.48 0.00 44.88 5.24
209 210 2.390599 GCAAGATGAGCGGACGCAA 61.391 57.895 19.48 7.01 44.88 4.85
210 211 1.421485 CAAGATGAGCGGACGCAAC 59.579 57.895 19.48 12.42 44.88 4.17
211 212 1.005037 AAGATGAGCGGACGCAACA 60.005 52.632 19.48 17.34 44.88 3.33
212 213 0.391661 AAGATGAGCGGACGCAACAT 60.392 50.000 21.72 21.72 44.88 2.71
213 214 0.459899 AGATGAGCGGACGCAACATA 59.540 50.000 19.48 0.50 44.88 2.29
214 215 1.134818 AGATGAGCGGACGCAACATAA 60.135 47.619 19.48 0.00 44.88 1.90
215 216 1.663643 GATGAGCGGACGCAACATAAA 59.336 47.619 19.48 0.00 44.88 1.40
216 217 0.793861 TGAGCGGACGCAACATAAAC 59.206 50.000 19.48 0.89 44.88 2.01
217 218 0.793861 GAGCGGACGCAACATAAACA 59.206 50.000 19.48 0.00 44.88 2.83
218 219 0.515564 AGCGGACGCAACATAAACAC 59.484 50.000 19.48 0.00 44.88 3.32
219 220 0.236187 GCGGACGCAACATAAACACA 59.764 50.000 12.31 0.00 41.49 3.72
220 221 1.334239 GCGGACGCAACATAAACACAA 60.334 47.619 12.31 0.00 41.49 3.33
221 222 2.667171 GCGGACGCAACATAAACACAAT 60.667 45.455 12.31 0.00 41.49 2.71
222 223 2.908009 CGGACGCAACATAAACACAATG 59.092 45.455 0.00 0.00 0.00 2.82
223 224 3.608241 CGGACGCAACATAAACACAATGT 60.608 43.478 0.00 0.00 39.22 2.71
224 225 4.377533 CGGACGCAACATAAACACAATGTA 60.378 41.667 0.00 0.00 36.56 2.29
225 226 5.453648 GGACGCAACATAAACACAATGTAA 58.546 37.500 0.00 0.00 36.56 2.41
226 227 5.341196 GGACGCAACATAAACACAATGTAAC 59.659 40.000 0.00 0.00 36.56 2.50
227 228 5.822278 ACGCAACATAAACACAATGTAACA 58.178 33.333 0.00 0.00 36.56 2.41
228 229 6.442952 ACGCAACATAAACACAATGTAACAT 58.557 32.000 0.00 0.00 36.56 2.71
229 230 6.362016 ACGCAACATAAACACAATGTAACATG 59.638 34.615 0.00 0.00 36.56 3.21
230 231 6.580416 CGCAACATAAACACAATGTAACATGA 59.420 34.615 0.00 0.00 36.56 3.07
231 232 7.201257 CGCAACATAAACACAATGTAACATGAG 60.201 37.037 0.00 0.00 36.56 2.90
232 233 7.062138 GCAACATAAACACAATGTAACATGAGG 59.938 37.037 0.00 0.00 36.56 3.86
233 234 6.620678 ACATAAACACAATGTAACATGAGGC 58.379 36.000 0.00 0.00 35.82 4.70
234 235 6.434028 ACATAAACACAATGTAACATGAGGCT 59.566 34.615 0.00 0.00 35.82 4.58
235 236 5.789643 AAACACAATGTAACATGAGGCTT 57.210 34.783 0.00 0.00 0.00 4.35
236 237 4.771590 ACACAATGTAACATGAGGCTTG 57.228 40.909 0.00 0.00 0.00 4.01
237 238 4.144297 ACACAATGTAACATGAGGCTTGT 58.856 39.130 0.00 0.00 0.00 3.16
238 239 4.584325 ACACAATGTAACATGAGGCTTGTT 59.416 37.500 9.36 9.36 40.30 2.83
239 240 4.919168 CACAATGTAACATGAGGCTTGTTG 59.081 41.667 13.49 3.27 37.81 3.33
240 241 3.855689 ATGTAACATGAGGCTTGTTGC 57.144 42.857 13.49 12.56 39.30 4.17
241 242 2.580962 TGTAACATGAGGCTTGTTGCA 58.419 42.857 15.83 15.83 44.04 4.08
242 243 2.954989 TGTAACATGAGGCTTGTTGCAA 59.045 40.909 16.99 0.00 43.54 4.08
243 244 2.806608 AACATGAGGCTTGTTGCAAG 57.193 45.000 0.00 4.65 45.15 4.01
244 245 1.696063 ACATGAGGCTTGTTGCAAGT 58.304 45.000 0.00 0.00 45.15 3.16
245 246 2.034124 ACATGAGGCTTGTTGCAAGTT 58.966 42.857 0.00 0.47 45.15 2.66
246 247 2.223876 ACATGAGGCTTGTTGCAAGTTG 60.224 45.455 0.00 0.00 45.15 3.16
247 248 0.102844 TGAGGCTTGTTGCAAGTTGC 59.897 50.000 21.17 21.17 45.15 4.17
260 261 3.248266 GCAAGTTGCAAAAGCTCATAGG 58.752 45.455 22.90 0.00 44.26 2.57
261 262 3.248266 CAAGTTGCAAAAGCTCATAGGC 58.752 45.455 0.00 0.00 0.00 3.93
262 263 2.800250 AGTTGCAAAAGCTCATAGGCT 58.200 42.857 0.00 0.00 45.30 4.58
263 264 2.751806 AGTTGCAAAAGCTCATAGGCTC 59.248 45.455 0.00 0.00 42.24 4.70
264 265 2.489329 GTTGCAAAAGCTCATAGGCTCA 59.511 45.455 0.00 0.00 42.24 4.26
265 266 3.008835 TGCAAAAGCTCATAGGCTCAT 57.991 42.857 0.00 0.00 42.24 2.90
266 267 2.686405 TGCAAAAGCTCATAGGCTCATG 59.314 45.455 0.00 0.00 42.24 3.07
267 268 2.034305 GCAAAAGCTCATAGGCTCATGG 59.966 50.000 0.00 0.00 42.24 3.66
268 269 3.548770 CAAAAGCTCATAGGCTCATGGA 58.451 45.455 0.00 0.00 42.24 3.41
269 270 3.939740 AAAGCTCATAGGCTCATGGAA 57.060 42.857 0.00 0.00 42.24 3.53
270 271 3.488778 AAGCTCATAGGCTCATGGAAG 57.511 47.619 0.00 0.00 42.24 3.46
271 272 2.687297 AGCTCATAGGCTCATGGAAGA 58.313 47.619 0.00 0.00 38.24 2.87
272 273 3.249752 AGCTCATAGGCTCATGGAAGAT 58.750 45.455 0.00 0.00 38.24 2.40
273 274 4.423913 AGCTCATAGGCTCATGGAAGATA 58.576 43.478 0.00 0.00 38.24 1.98
274 275 5.031495 AGCTCATAGGCTCATGGAAGATAT 58.969 41.667 0.00 0.00 38.24 1.63
275 276 5.129155 AGCTCATAGGCTCATGGAAGATATC 59.871 44.000 0.00 0.00 38.24 1.63
276 277 5.588958 TCATAGGCTCATGGAAGATATCG 57.411 43.478 0.00 0.00 0.00 2.92
277 278 4.403752 TCATAGGCTCATGGAAGATATCGG 59.596 45.833 0.00 0.00 0.00 4.18
278 279 2.894731 AGGCTCATGGAAGATATCGGA 58.105 47.619 0.00 0.00 0.00 4.55
279 280 2.564947 AGGCTCATGGAAGATATCGGAC 59.435 50.000 0.00 0.00 0.00 4.79
280 281 2.600731 GCTCATGGAAGATATCGGACG 58.399 52.381 0.00 0.00 0.00 4.79
281 282 2.600731 CTCATGGAAGATATCGGACGC 58.399 52.381 0.00 0.00 0.00 5.19
282 283 1.272490 TCATGGAAGATATCGGACGCC 59.728 52.381 0.00 0.00 0.00 5.68
283 284 1.273606 CATGGAAGATATCGGACGCCT 59.726 52.381 0.00 0.00 0.00 5.52
284 285 1.410004 TGGAAGATATCGGACGCCTT 58.590 50.000 0.00 0.00 0.00 4.35
285 286 1.760613 TGGAAGATATCGGACGCCTTT 59.239 47.619 0.00 0.00 0.00 3.11
286 287 2.223971 TGGAAGATATCGGACGCCTTTC 60.224 50.000 0.00 0.00 0.00 2.62
287 288 2.223971 GGAAGATATCGGACGCCTTTCA 60.224 50.000 0.00 0.00 0.00 2.69
288 289 2.510768 AGATATCGGACGCCTTTCAC 57.489 50.000 0.00 0.00 0.00 3.18
289 290 1.129326 GATATCGGACGCCTTTCACG 58.871 55.000 0.00 0.00 0.00 4.35
290 291 0.874607 ATATCGGACGCCTTTCACGC 60.875 55.000 0.00 0.00 0.00 5.34
291 292 2.215465 TATCGGACGCCTTTCACGCA 62.215 55.000 0.00 0.00 0.00 5.24
292 293 3.777925 CGGACGCCTTTCACGCAG 61.778 66.667 0.00 0.00 0.00 5.18
293 294 2.357034 GGACGCCTTTCACGCAGA 60.357 61.111 0.00 0.00 0.00 4.26
294 295 1.959226 GGACGCCTTTCACGCAGAA 60.959 57.895 0.00 0.00 0.00 3.02
295 296 1.503818 GGACGCCTTTCACGCAGAAA 61.504 55.000 3.94 3.94 43.71 2.52
296 297 0.306533 GACGCCTTTCACGCAGAAAA 59.693 50.000 5.33 0.00 45.11 2.29
297 298 0.951558 ACGCCTTTCACGCAGAAAAT 59.048 45.000 5.33 0.00 45.11 1.82
298 299 2.147958 ACGCCTTTCACGCAGAAAATA 58.852 42.857 5.33 0.00 45.11 1.40
299 300 2.159627 ACGCCTTTCACGCAGAAAATAG 59.840 45.455 5.33 2.80 45.11 1.73
300 301 2.519963 GCCTTTCACGCAGAAAATAGC 58.480 47.619 5.33 5.29 45.11 2.97
301 302 2.732282 GCCTTTCACGCAGAAAATAGCC 60.732 50.000 5.33 0.00 45.11 3.93
302 303 2.487762 CCTTTCACGCAGAAAATAGCCA 59.512 45.455 5.33 0.00 45.11 4.75
303 304 3.492313 CTTTCACGCAGAAAATAGCCAC 58.508 45.455 5.33 0.00 45.11 5.01
304 305 1.448985 TCACGCAGAAAATAGCCACC 58.551 50.000 0.00 0.00 0.00 4.61
305 306 0.096976 CACGCAGAAAATAGCCACCG 59.903 55.000 0.00 0.00 0.00 4.94
306 307 0.036765 ACGCAGAAAATAGCCACCGA 60.037 50.000 0.00 0.00 0.00 4.69
307 308 1.083489 CGCAGAAAATAGCCACCGAA 58.917 50.000 0.00 0.00 0.00 4.30
308 309 1.466950 CGCAGAAAATAGCCACCGAAA 59.533 47.619 0.00 0.00 0.00 3.46
309 310 2.095466 CGCAGAAAATAGCCACCGAAAA 60.095 45.455 0.00 0.00 0.00 2.29
310 311 3.610585 CGCAGAAAATAGCCACCGAAAAA 60.611 43.478 0.00 0.00 0.00 1.94
349 350 1.663161 GCAAGGCTCGTGTTGTAAAGC 60.663 52.381 0.00 0.00 0.00 3.51
353 354 1.794116 GGCTCGTGTTGTAAAGCGTTA 59.206 47.619 0.00 0.00 35.58 3.18
354 355 2.414138 GGCTCGTGTTGTAAAGCGTTAT 59.586 45.455 0.00 0.00 35.58 1.89
376 377 0.941542 GTAACACGAGGCTTGTTGCA 59.058 50.000 13.49 0.00 45.15 4.08
380 381 0.318107 CACGAGGCTTGTTGCAAAGG 60.318 55.000 4.15 0.00 45.15 3.11
396 397 4.783621 GGCTCGGTGGCTCATGCA 62.784 66.667 0.00 0.00 41.91 3.96
413 414 3.726557 TGCAGAGGGATCAAATGACTT 57.273 42.857 0.00 0.00 0.00 3.01
414 415 4.038271 TGCAGAGGGATCAAATGACTTT 57.962 40.909 0.00 0.00 0.00 2.66
430 431 1.436983 CTTTATCGAACGGCTGCCCC 61.437 60.000 14.12 1.57 0.00 5.80
472 473 2.203800 TCGTCCGATCAATGTGTAGC 57.796 50.000 0.00 0.00 0.00 3.58
507 508 4.918810 TTTGGAAAAAGCAAGGACTCTC 57.081 40.909 0.00 0.00 0.00 3.20
515 516 5.573337 AAAGCAAGGACTCTCATAATTGC 57.427 39.130 0.00 0.00 42.48 3.56
516 517 4.500499 AGCAAGGACTCTCATAATTGCT 57.500 40.909 4.50 4.50 46.17 3.91
553 554 6.085573 CGAGCACATGACAAATTGAATGTTA 58.914 36.000 13.44 0.00 30.16 2.41
583 584 4.030134 AGTTTAGTTACGCGAGGATGAG 57.970 45.455 15.93 0.00 0.00 2.90
586 587 4.913335 TTAGTTACGCGAGGATGAGAAT 57.087 40.909 15.93 0.00 0.00 2.40
643 644 6.254589 TGGTTTATTTTTGACAGAAACTTGCG 59.745 34.615 0.00 0.00 32.00 4.85
644 645 6.474102 GGTTTATTTTTGACAGAAACTTGCGA 59.526 34.615 0.00 0.00 32.00 5.10
649 650 1.264020 TGACAGAAACTTGCGATGTGC 59.736 47.619 0.00 0.00 46.70 4.57
663 664 0.604578 ATGTGCCGCTGAAATTTGCT 59.395 45.000 0.00 0.00 0.00 3.91
671 672 3.067180 CCGCTGAAATTTGCTATCCATGT 59.933 43.478 0.00 0.00 0.00 3.21
677 678 4.989279 AATTTGCTATCCATGTGTGACC 57.011 40.909 0.00 0.00 0.00 4.02
689 690 3.686916 TGTGTGACCGGAATTGTCATA 57.313 42.857 9.46 0.00 43.98 2.15
690 691 4.009370 TGTGTGACCGGAATTGTCATAA 57.991 40.909 9.46 0.00 43.98 1.90
732 754 6.484977 GGCACTTTCATTTGGGAAAAACAATA 59.515 34.615 0.00 0.00 36.42 1.90
758 780 8.107729 AGCATGGATTCAACATATACAGATCAT 58.892 33.333 0.00 0.00 0.00 2.45
759 781 9.387257 GCATGGATTCAACATATACAGATCATA 57.613 33.333 0.00 0.00 0.00 2.15
779 801 6.630071 TCATAGATCACGTCACAAAATCTCA 58.370 36.000 0.00 0.00 0.00 3.27
986 1014 4.828925 GCCAGCTCGCCTCCACTC 62.829 72.222 0.00 0.00 0.00 3.51
987 1015 4.154347 CCAGCTCGCCTCCACTCC 62.154 72.222 0.00 0.00 0.00 3.85
988 1016 3.385384 CAGCTCGCCTCCACTCCA 61.385 66.667 0.00 0.00 0.00 3.86
1018 1046 0.813610 CATGGCCGACGCTAAATCCA 60.814 55.000 0.00 0.00 34.44 3.41
1035 1063 4.699522 AAAGGCCGAGCACCGACC 62.700 66.667 0.00 0.00 41.46 4.79
1042 1070 2.280592 GAGCACCGACCACCGTTT 60.281 61.111 0.00 0.00 36.31 3.60
1047 1075 3.047877 CCGACCACCGTTTCCAGC 61.048 66.667 0.00 0.00 36.31 4.85
1146 1174 1.447489 CCACTCGCAGCTCTTCCTG 60.447 63.158 0.00 0.00 35.93 3.86
1245 1273 1.324005 CCCTCACCTCCGTCTTCCTC 61.324 65.000 0.00 0.00 0.00 3.71
1537 1565 2.048603 GGCCGCTTCTGAGCCATTT 61.049 57.895 1.16 0.00 46.42 2.32
1592 1620 0.314618 TTAACTGTGGACTGCGCGTA 59.685 50.000 8.43 0.71 0.00 4.42
1664 1693 0.457337 GCAGCTTGCGAAATTGGGAG 60.457 55.000 0.00 0.00 31.71 4.30
1665 1694 0.171903 CAGCTTGCGAAATTGGGAGG 59.828 55.000 0.00 0.00 0.00 4.30
1673 1719 2.687935 GCGAAATTGGGAGGCTATTTGA 59.312 45.455 0.00 0.00 0.00 2.69
1688 1734 4.630069 GCTATTTGAGTAGAACCTGCGAAA 59.370 41.667 0.00 0.00 0.00 3.46
1755 1802 3.317993 TGAACTAGGCTTTTCCAAAGCAC 59.682 43.478 19.99 11.08 44.71 4.40
1774 1898 4.965532 AGCACCCAAGTCTTAGATAGATGT 59.034 41.667 0.00 0.00 34.79 3.06
1792 1916 3.755112 TGTCACGATAACCTGTTCCAA 57.245 42.857 0.00 0.00 0.00 3.53
1796 1920 4.092968 GTCACGATAACCTGTTCCAATGTC 59.907 45.833 0.00 0.00 0.00 3.06
1837 1988 2.635714 TGTATGACAGAGCAATGCTGG 58.364 47.619 14.48 7.26 39.88 4.85
1845 1996 5.297527 TGACAGAGCAATGCTGGTATATTTG 59.702 40.000 14.48 0.00 39.88 2.32
1848 1999 6.153340 ACAGAGCAATGCTGGTATATTTGTTT 59.847 34.615 14.48 0.00 39.88 2.83
1859 2010 9.037737 GCTGGTATATTTGTTTCGTCATAGTTA 57.962 33.333 0.00 0.00 0.00 2.24
1953 2790 8.822105 GAATTTGACAATTCGAGGTGTATTAC 57.178 34.615 3.30 0.00 39.16 1.89
2049 3048 4.645535 TGAGAACTGAGGATTCTTGTTGG 58.354 43.478 0.00 0.00 36.53 3.77
2064 3063 0.391130 GTTGGAGTGCATGCCGTAGA 60.391 55.000 16.68 0.00 0.00 2.59
2100 3261 2.284190 AGCTTTAGCCATCTCTTTCGC 58.716 47.619 0.00 0.00 43.38 4.70
2102 3263 1.594862 CTTTAGCCATCTCTTTCGCGG 59.405 52.381 6.13 0.00 0.00 6.46
2106 3267 1.448540 CCATCTCTTTCGCGGCTGT 60.449 57.895 6.13 0.00 0.00 4.40
2244 3422 2.043227 GCTGGCTCCTACTATCCTGTT 58.957 52.381 0.00 0.00 0.00 3.16
2265 3443 0.319211 TCACAGTAGTTGGCGTTCCG 60.319 55.000 0.00 0.00 34.14 4.30
2307 3485 2.076100 TCAATGCGCTTACAGGTTGAG 58.924 47.619 9.73 0.00 0.00 3.02
2308 3486 2.076100 CAATGCGCTTACAGGTTGAGA 58.924 47.619 9.73 0.00 0.00 3.27
2310 3488 0.391228 TGCGCTTACAGGTTGAGACA 59.609 50.000 9.73 0.00 0.00 3.41
2311 3489 0.790814 GCGCTTACAGGTTGAGACAC 59.209 55.000 0.00 0.00 0.00 3.67
2312 3490 1.872237 GCGCTTACAGGTTGAGACACA 60.872 52.381 0.00 0.00 0.00 3.72
2314 3492 2.869801 CGCTTACAGGTTGAGACACAAA 59.130 45.455 0.00 0.00 40.36 2.83
2315 3493 3.303132 CGCTTACAGGTTGAGACACAAAC 60.303 47.826 0.00 0.00 45.60 2.93
2326 3527 2.367567 GAGACACAAACACTGGACCCTA 59.632 50.000 0.00 0.00 0.00 3.53
2338 3539 4.080919 CACTGGACCCTATTCATGTCAAGA 60.081 45.833 0.00 0.00 34.35 3.02
2352 3553 2.368548 TGTCAAGAGAAGCTGCCTTGTA 59.631 45.455 17.55 9.26 38.61 2.41
2395 3596 3.390521 CCAGCCCAGTAGCGGTCA 61.391 66.667 0.00 0.00 38.01 4.02
2418 3619 2.910319 TGGCCCAGTCAGTTAGTATTGT 59.090 45.455 0.00 0.00 0.00 2.71
2433 3634 8.361139 AGTTAGTATTGTTCTATCCTCAATCCG 58.639 37.037 0.00 0.00 34.35 4.18
2441 3642 3.829026 TCTATCCTCAATCCGTCATCAGG 59.171 47.826 0.00 0.00 0.00 3.86
2444 3645 2.693591 TCCTCAATCCGTCATCAGGTAC 59.306 50.000 0.00 0.00 0.00 3.34
2489 3690 4.253685 CAAGATACGAGCTCCAAAAAGGA 58.746 43.478 8.47 0.00 46.75 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.270877 TCCTTTAAGCCATCTTTCGCTC 58.729 45.455 0.00 0.00 33.09 5.03
1 2 3.350219 TCCTTTAAGCCATCTTTCGCT 57.650 42.857 0.00 0.00 36.74 4.93
2 3 3.879892 AGATCCTTTAAGCCATCTTTCGC 59.120 43.478 0.00 0.00 33.85 4.70
3 4 5.118990 TCAGATCCTTTAAGCCATCTTTCG 58.881 41.667 2.94 0.00 33.85 3.46
4 5 6.352516 TCTCAGATCCTTTAAGCCATCTTTC 58.647 40.000 2.94 0.00 33.85 2.62
7 8 4.202346 GCTCTCAGATCCTTTAAGCCATCT 60.202 45.833 0.00 0.48 0.00 2.90
8 9 4.064388 GCTCTCAGATCCTTTAAGCCATC 58.936 47.826 0.00 0.00 0.00 3.51
9 10 3.457380 TGCTCTCAGATCCTTTAAGCCAT 59.543 43.478 0.00 0.00 0.00 4.40
10 11 2.840038 TGCTCTCAGATCCTTTAAGCCA 59.160 45.455 0.00 0.00 0.00 4.75
11 12 3.550437 TGCTCTCAGATCCTTTAAGCC 57.450 47.619 0.00 0.00 0.00 4.35
12 13 6.448207 AAAATGCTCTCAGATCCTTTAAGC 57.552 37.500 0.00 0.00 0.00 3.09
13 14 9.118300 ACATAAAATGCTCTCAGATCCTTTAAG 57.882 33.333 0.00 0.00 0.00 1.85
14 15 9.466497 AACATAAAATGCTCTCAGATCCTTTAA 57.534 29.630 0.00 0.00 0.00 1.52
15 16 9.466497 AAACATAAAATGCTCTCAGATCCTTTA 57.534 29.630 0.00 0.00 0.00 1.85
16 17 7.951347 AACATAAAATGCTCTCAGATCCTTT 57.049 32.000 0.00 0.00 0.00 3.11
17 18 7.951347 AAACATAAAATGCTCTCAGATCCTT 57.049 32.000 0.00 0.00 0.00 3.36
18 19 7.067981 GGAAAACATAAAATGCTCTCAGATCCT 59.932 37.037 0.00 0.00 0.00 3.24
19 20 7.067981 AGGAAAACATAAAATGCTCTCAGATCC 59.932 37.037 0.00 0.00 0.00 3.36
20 21 7.914346 CAGGAAAACATAAAATGCTCTCAGATC 59.086 37.037 0.00 0.00 0.00 2.75
21 22 7.395489 ACAGGAAAACATAAAATGCTCTCAGAT 59.605 33.333 0.00 0.00 0.00 2.90
22 23 6.716628 ACAGGAAAACATAAAATGCTCTCAGA 59.283 34.615 0.00 0.00 0.00 3.27
23 24 6.805271 CACAGGAAAACATAAAATGCTCTCAG 59.195 38.462 0.00 0.00 0.00 3.35
24 25 6.265196 ACACAGGAAAACATAAAATGCTCTCA 59.735 34.615 0.00 0.00 0.00 3.27
25 26 6.681777 ACACAGGAAAACATAAAATGCTCTC 58.318 36.000 0.00 0.00 0.00 3.20
26 27 6.655078 ACACAGGAAAACATAAAATGCTCT 57.345 33.333 0.00 0.00 0.00 4.09
27 28 7.713764 AAACACAGGAAAACATAAAATGCTC 57.286 32.000 0.00 0.00 0.00 4.26
28 29 8.637986 TCTAAACACAGGAAAACATAAAATGCT 58.362 29.630 0.00 0.00 0.00 3.79
29 30 8.810652 TCTAAACACAGGAAAACATAAAATGC 57.189 30.769 0.00 0.00 0.00 3.56
30 31 8.915654 GCTCTAAACACAGGAAAACATAAAATG 58.084 33.333 0.00 0.00 0.00 2.32
31 32 7.807907 CGCTCTAAACACAGGAAAACATAAAAT 59.192 33.333 0.00 0.00 0.00 1.82
32 33 7.012515 TCGCTCTAAACACAGGAAAACATAAAA 59.987 33.333 0.00 0.00 0.00 1.52
33 34 6.483974 TCGCTCTAAACACAGGAAAACATAAA 59.516 34.615 0.00 0.00 0.00 1.40
34 35 5.992829 TCGCTCTAAACACAGGAAAACATAA 59.007 36.000 0.00 0.00 0.00 1.90
35 36 5.407387 GTCGCTCTAAACACAGGAAAACATA 59.593 40.000 0.00 0.00 0.00 2.29
36 37 4.213482 GTCGCTCTAAACACAGGAAAACAT 59.787 41.667 0.00 0.00 0.00 2.71
37 38 3.558418 GTCGCTCTAAACACAGGAAAACA 59.442 43.478 0.00 0.00 0.00 2.83
38 39 3.808174 AGTCGCTCTAAACACAGGAAAAC 59.192 43.478 0.00 0.00 0.00 2.43
39 40 4.067972 AGTCGCTCTAAACACAGGAAAA 57.932 40.909 0.00 0.00 0.00 2.29
40 41 3.746045 AGTCGCTCTAAACACAGGAAA 57.254 42.857 0.00 0.00 0.00 3.13
41 42 3.746045 AAGTCGCTCTAAACACAGGAA 57.254 42.857 0.00 0.00 0.00 3.36
42 43 3.181469 ACAAAGTCGCTCTAAACACAGGA 60.181 43.478 0.00 0.00 0.00 3.86
43 44 3.131396 ACAAAGTCGCTCTAAACACAGG 58.869 45.455 0.00 0.00 0.00 4.00
44 45 4.051922 AGACAAAGTCGCTCTAAACACAG 58.948 43.478 0.00 0.00 37.67 3.66
45 46 4.054780 AGACAAAGTCGCTCTAAACACA 57.945 40.909 0.00 0.00 37.67 3.72
46 47 7.249147 TCTATAGACAAAGTCGCTCTAAACAC 58.751 38.462 0.00 0.00 37.67 3.32
47 48 7.387119 TCTATAGACAAAGTCGCTCTAAACA 57.613 36.000 0.00 0.00 37.67 2.83
48 49 8.684973 TTTCTATAGACAAAGTCGCTCTAAAC 57.315 34.615 0.67 0.00 37.67 2.01
49 50 9.871238 AATTTCTATAGACAAAGTCGCTCTAAA 57.129 29.630 0.67 0.00 37.67 1.85
52 53 9.469807 CATAATTTCTATAGACAAAGTCGCTCT 57.530 33.333 0.67 0.00 37.67 4.09
53 54 9.464714 TCATAATTTCTATAGACAAAGTCGCTC 57.535 33.333 0.67 0.00 37.67 5.03
54 55 9.817809 TTCATAATTTCTATAGACAAAGTCGCT 57.182 29.630 0.67 0.00 37.67 4.93
87 88 8.312564 GGCCGACTAAATAGAAGTATTTCCTAT 58.687 37.037 0.00 0.00 39.23 2.57
88 89 7.288389 TGGCCGACTAAATAGAAGTATTTCCTA 59.712 37.037 0.00 0.00 39.23 2.94
89 90 6.099269 TGGCCGACTAAATAGAAGTATTTCCT 59.901 38.462 0.00 0.00 39.23 3.36
90 91 6.285990 TGGCCGACTAAATAGAAGTATTTCC 58.714 40.000 0.00 0.00 39.23 3.13
91 92 7.781548 TTGGCCGACTAAATAGAAGTATTTC 57.218 36.000 0.00 0.00 39.23 2.17
92 93 8.621286 CAATTGGCCGACTAAATAGAAGTATTT 58.379 33.333 0.00 0.00 41.05 1.40
93 94 7.228706 CCAATTGGCCGACTAAATAGAAGTATT 59.771 37.037 12.53 0.00 0.00 1.89
94 95 6.710744 CCAATTGGCCGACTAAATAGAAGTAT 59.289 38.462 12.53 0.00 0.00 2.12
95 96 6.053005 CCAATTGGCCGACTAAATAGAAGTA 58.947 40.000 12.53 0.00 0.00 2.24
96 97 4.881850 CCAATTGGCCGACTAAATAGAAGT 59.118 41.667 12.53 0.00 0.00 3.01
97 98 4.275936 CCCAATTGGCCGACTAAATAGAAG 59.724 45.833 19.75 0.00 0.00 2.85
98 99 4.204012 CCCAATTGGCCGACTAAATAGAA 58.796 43.478 19.75 0.00 0.00 2.10
99 100 3.815809 CCCAATTGGCCGACTAAATAGA 58.184 45.455 19.75 0.00 0.00 1.98
112 113 1.913451 TACGTTTCGCGCCCAATTGG 61.913 55.000 18.21 18.21 46.11 3.16
113 114 0.098025 ATACGTTTCGCGCCCAATTG 59.902 50.000 0.00 0.00 46.11 2.32
114 115 0.098025 CATACGTTTCGCGCCCAATT 59.902 50.000 0.00 0.00 46.11 2.32
115 116 1.711060 CCATACGTTTCGCGCCCAAT 61.711 55.000 0.00 0.00 46.11 3.16
116 117 2.392181 CCATACGTTTCGCGCCCAA 61.392 57.895 0.00 0.00 46.11 4.12
117 118 2.816083 CCATACGTTTCGCGCCCA 60.816 61.111 0.00 0.00 46.11 5.36
118 119 4.232248 GCCATACGTTTCGCGCCC 62.232 66.667 0.00 0.00 46.11 6.13
119 120 4.568876 CGCCATACGTTTCGCGCC 62.569 66.667 5.03 0.00 46.11 6.53
122 123 3.845472 ACGCGCCATACGTTTCGC 61.845 61.111 5.73 3.17 41.93 4.70
128 129 0.438445 CATGGATAACGCGCCATACG 59.562 55.000 14.45 1.86 42.81 3.06
129 130 1.194547 CACATGGATAACGCGCCATAC 59.805 52.381 14.45 5.80 42.81 2.39
130 131 1.507562 CACATGGATAACGCGCCATA 58.492 50.000 14.45 2.71 42.81 2.74
131 132 1.785041 GCACATGGATAACGCGCCAT 61.785 55.000 5.73 8.28 45.47 4.40
132 133 2.468670 GCACATGGATAACGCGCCA 61.469 57.895 5.73 5.67 38.78 5.69
133 134 2.327940 GCACATGGATAACGCGCC 59.672 61.111 5.73 0.00 0.00 6.53
134 135 2.327940 GGCACATGGATAACGCGC 59.672 61.111 5.73 0.00 0.00 6.86
135 136 2.625906 CGGCACATGGATAACGCG 59.374 61.111 3.53 3.53 0.00 6.01
136 137 1.785041 ATGCGGCACATGGATAACGC 61.785 55.000 4.03 13.13 46.34 4.84
137 138 2.320215 ATGCGGCACATGGATAACG 58.680 52.632 4.03 0.00 37.70 3.18
149 150 4.783621 TCAGTCAGGGCATGCGGC 62.784 66.667 12.44 0.00 43.74 6.53
150 151 1.442526 GATTCAGTCAGGGCATGCGG 61.443 60.000 12.44 3.83 0.00 5.69
151 152 0.745486 TGATTCAGTCAGGGCATGCG 60.745 55.000 12.44 0.00 31.80 4.73
152 153 1.607628 GATGATTCAGTCAGGGCATGC 59.392 52.381 9.90 9.90 40.92 4.06
153 154 3.210232 AGATGATTCAGTCAGGGCATG 57.790 47.619 0.00 0.00 40.92 4.06
154 155 3.972638 AGTAGATGATTCAGTCAGGGCAT 59.027 43.478 0.00 0.00 40.92 4.40
155 156 3.378512 AGTAGATGATTCAGTCAGGGCA 58.621 45.455 0.00 0.00 40.92 5.36
156 157 4.342378 TGTAGTAGATGATTCAGTCAGGGC 59.658 45.833 0.00 0.00 40.92 5.19
157 158 6.662865 ATGTAGTAGATGATTCAGTCAGGG 57.337 41.667 0.00 0.00 40.92 4.45
158 159 9.241919 AGATATGTAGTAGATGATTCAGTCAGG 57.758 37.037 0.00 0.00 40.92 3.86
160 161 9.579932 ACAGATATGTAGTAGATGATTCAGTCA 57.420 33.333 0.00 0.00 42.06 3.41
163 164 9.138062 GCAACAGATATGTAGTAGATGATTCAG 57.862 37.037 0.00 0.00 0.00 3.02
164 165 8.864087 AGCAACAGATATGTAGTAGATGATTCA 58.136 33.333 0.00 0.00 0.00 2.57
165 166 9.138062 CAGCAACAGATATGTAGTAGATGATTC 57.862 37.037 0.00 0.00 0.00 2.52
166 167 7.601886 GCAGCAACAGATATGTAGTAGATGATT 59.398 37.037 0.00 0.00 0.00 2.57
167 168 7.095910 GCAGCAACAGATATGTAGTAGATGAT 58.904 38.462 0.00 0.00 0.00 2.45
168 169 6.040842 TGCAGCAACAGATATGTAGTAGATGA 59.959 38.462 0.00 0.00 0.00 2.92
169 170 6.218746 TGCAGCAACAGATATGTAGTAGATG 58.781 40.000 0.00 0.00 0.00 2.90
170 171 6.410942 TGCAGCAACAGATATGTAGTAGAT 57.589 37.500 0.00 0.00 0.00 1.98
171 172 5.852282 TGCAGCAACAGATATGTAGTAGA 57.148 39.130 0.00 0.00 0.00 2.59
172 173 6.276091 TCTTGCAGCAACAGATATGTAGTAG 58.724 40.000 2.83 0.00 0.00 2.57
173 174 6.220726 TCTTGCAGCAACAGATATGTAGTA 57.779 37.500 2.83 0.00 0.00 1.82
174 175 5.089970 TCTTGCAGCAACAGATATGTAGT 57.910 39.130 2.83 0.00 0.00 2.73
175 176 5.756833 TCATCTTGCAGCAACAGATATGTAG 59.243 40.000 2.83 0.00 0.00 2.74
176 177 5.673514 TCATCTTGCAGCAACAGATATGTA 58.326 37.500 2.83 0.00 0.00 2.29
177 178 4.520179 TCATCTTGCAGCAACAGATATGT 58.480 39.130 2.83 0.00 0.00 2.29
178 179 4.554919 GCTCATCTTGCAGCAACAGATATG 60.555 45.833 2.83 4.31 35.56 1.78
179 180 3.564644 GCTCATCTTGCAGCAACAGATAT 59.435 43.478 2.83 0.00 35.56 1.63
180 181 2.941064 GCTCATCTTGCAGCAACAGATA 59.059 45.455 2.83 0.00 35.56 1.98
181 182 1.743958 GCTCATCTTGCAGCAACAGAT 59.256 47.619 2.83 3.52 35.56 2.90
182 183 1.162698 GCTCATCTTGCAGCAACAGA 58.837 50.000 2.83 0.73 35.56 3.41
183 184 0.179197 CGCTCATCTTGCAGCAACAG 60.179 55.000 2.83 0.00 35.15 3.16
184 185 1.579964 CCGCTCATCTTGCAGCAACA 61.580 55.000 2.83 0.00 35.15 3.33
185 186 1.136147 CCGCTCATCTTGCAGCAAC 59.864 57.895 2.83 0.00 35.15 4.17
186 187 1.003476 TCCGCTCATCTTGCAGCAA 60.003 52.632 7.81 7.81 35.15 3.91
187 188 1.742880 GTCCGCTCATCTTGCAGCA 60.743 57.895 0.00 0.00 35.15 4.41
188 189 2.806856 CGTCCGCTCATCTTGCAGC 61.807 63.158 0.00 0.00 0.00 5.25
189 190 2.806856 GCGTCCGCTCATCTTGCAG 61.807 63.158 4.10 0.00 38.26 4.41
190 191 2.815211 GCGTCCGCTCATCTTGCA 60.815 61.111 4.10 0.00 38.26 4.08
191 192 2.390599 TTGCGTCCGCTCATCTTGC 61.391 57.895 13.31 0.00 42.51 4.01
192 193 1.291184 TGTTGCGTCCGCTCATCTTG 61.291 55.000 13.31 0.00 42.51 3.02
193 194 0.391661 ATGTTGCGTCCGCTCATCTT 60.392 50.000 13.31 0.00 42.51 2.40
194 195 0.459899 TATGTTGCGTCCGCTCATCT 59.540 50.000 19.42 7.20 42.51 2.90
195 196 1.286501 TTATGTTGCGTCCGCTCATC 58.713 50.000 19.42 7.31 42.51 2.92
196 197 1.396996 GTTTATGTTGCGTCCGCTCAT 59.603 47.619 13.31 17.27 42.51 2.90
197 198 0.793861 GTTTATGTTGCGTCCGCTCA 59.206 50.000 13.31 11.95 42.51 4.26
198 199 0.793861 TGTTTATGTTGCGTCCGCTC 59.206 50.000 13.31 6.83 42.51 5.03
199 200 0.515564 GTGTTTATGTTGCGTCCGCT 59.484 50.000 13.31 0.00 42.51 5.52
200 201 0.236187 TGTGTTTATGTTGCGTCCGC 59.764 50.000 4.42 4.42 42.35 5.54
201 202 2.672188 TTGTGTTTATGTTGCGTCCG 57.328 45.000 0.00 0.00 0.00 4.79
202 203 3.896122 ACATTGTGTTTATGTTGCGTCC 58.104 40.909 0.00 0.00 32.48 4.79
203 204 5.910166 TGTTACATTGTGTTTATGTTGCGTC 59.090 36.000 0.00 0.00 37.42 5.19
204 205 5.822278 TGTTACATTGTGTTTATGTTGCGT 58.178 33.333 0.00 0.00 37.42 5.24
205 206 6.580416 TCATGTTACATTGTGTTTATGTTGCG 59.420 34.615 0.00 0.00 37.42 4.85
206 207 7.062138 CCTCATGTTACATTGTGTTTATGTTGC 59.938 37.037 0.00 0.00 37.42 4.17
207 208 7.062138 GCCTCATGTTACATTGTGTTTATGTTG 59.938 37.037 0.00 0.00 37.42 3.33
208 209 7.039784 AGCCTCATGTTACATTGTGTTTATGTT 60.040 33.333 0.00 0.00 37.42 2.71
209 210 6.434028 AGCCTCATGTTACATTGTGTTTATGT 59.566 34.615 0.00 0.00 39.44 2.29
210 211 6.855836 AGCCTCATGTTACATTGTGTTTATG 58.144 36.000 0.00 0.04 0.00 1.90
211 212 7.039784 ACAAGCCTCATGTTACATTGTGTTTAT 60.040 33.333 0.00 0.00 0.00 1.40
212 213 6.264292 ACAAGCCTCATGTTACATTGTGTTTA 59.736 34.615 0.00 0.00 0.00 2.01
213 214 5.068987 ACAAGCCTCATGTTACATTGTGTTT 59.931 36.000 0.00 0.00 0.00 2.83
214 215 4.584325 ACAAGCCTCATGTTACATTGTGTT 59.416 37.500 0.00 0.00 0.00 3.32
215 216 4.144297 ACAAGCCTCATGTTACATTGTGT 58.856 39.130 0.00 0.00 0.00 3.72
216 217 4.771590 ACAAGCCTCATGTTACATTGTG 57.228 40.909 0.00 0.00 0.00 3.33
217 218 4.559300 GCAACAAGCCTCATGTTACATTGT 60.559 41.667 0.00 0.00 38.90 2.71
218 219 3.922240 GCAACAAGCCTCATGTTACATTG 59.078 43.478 0.00 0.00 38.90 2.82
219 220 3.573538 TGCAACAAGCCTCATGTTACATT 59.426 39.130 0.00 0.00 44.83 2.71
220 221 3.156293 TGCAACAAGCCTCATGTTACAT 58.844 40.909 0.00 0.00 44.83 2.29
221 222 2.580962 TGCAACAAGCCTCATGTTACA 58.419 42.857 0.00 0.00 44.83 2.41
222 223 3.004734 ACTTGCAACAAGCCTCATGTTAC 59.995 43.478 7.23 0.00 44.83 2.50
223 224 3.221771 ACTTGCAACAAGCCTCATGTTA 58.778 40.909 7.23 0.00 44.83 2.41
224 225 2.034124 ACTTGCAACAAGCCTCATGTT 58.966 42.857 7.23 0.00 44.83 2.71
225 226 1.696063 ACTTGCAACAAGCCTCATGT 58.304 45.000 7.23 0.00 44.83 3.21
226 227 2.400399 CAACTTGCAACAAGCCTCATG 58.600 47.619 7.23 0.00 44.83 3.07
227 228 1.269936 GCAACTTGCAACAAGCCTCAT 60.270 47.619 8.97 0.00 44.26 2.90
228 229 0.102844 GCAACTTGCAACAAGCCTCA 59.897 50.000 8.97 0.00 44.26 3.86
229 230 2.890941 GCAACTTGCAACAAGCCTC 58.109 52.632 8.97 0.00 44.26 4.70
246 247 2.034305 CCATGAGCCTATGAGCTTTTGC 59.966 50.000 0.00 0.00 45.15 3.68
247 248 3.548770 TCCATGAGCCTATGAGCTTTTG 58.451 45.455 0.00 0.00 45.15 2.44
248 249 3.939740 TCCATGAGCCTATGAGCTTTT 57.060 42.857 0.00 0.00 45.15 2.27
249 250 3.457380 TCTTCCATGAGCCTATGAGCTTT 59.543 43.478 0.00 0.00 45.15 3.51
250 251 3.044156 TCTTCCATGAGCCTATGAGCTT 58.956 45.455 0.00 0.00 45.15 3.74
252 253 3.699411 ATCTTCCATGAGCCTATGAGC 57.301 47.619 0.00 0.00 0.00 4.26
253 254 5.451659 CCGATATCTTCCATGAGCCTATGAG 60.452 48.000 0.34 0.00 0.00 2.90
254 255 4.403752 CCGATATCTTCCATGAGCCTATGA 59.596 45.833 0.34 0.00 0.00 2.15
255 256 4.403752 TCCGATATCTTCCATGAGCCTATG 59.596 45.833 0.34 0.00 0.00 2.23
256 257 4.404073 GTCCGATATCTTCCATGAGCCTAT 59.596 45.833 0.34 0.00 0.00 2.57
257 258 3.764434 GTCCGATATCTTCCATGAGCCTA 59.236 47.826 0.34 0.00 0.00 3.93
258 259 2.564947 GTCCGATATCTTCCATGAGCCT 59.435 50.000 0.34 0.00 0.00 4.58
259 260 2.672478 CGTCCGATATCTTCCATGAGCC 60.672 54.545 0.34 0.00 0.00 4.70
260 261 2.600731 CGTCCGATATCTTCCATGAGC 58.399 52.381 0.34 0.00 0.00 4.26
261 262 2.600731 GCGTCCGATATCTTCCATGAG 58.399 52.381 0.34 0.00 0.00 2.90
262 263 1.272490 GGCGTCCGATATCTTCCATGA 59.728 52.381 0.34 0.00 0.00 3.07
263 264 1.273606 AGGCGTCCGATATCTTCCATG 59.726 52.381 0.34 0.00 0.00 3.66
264 265 1.633774 AGGCGTCCGATATCTTCCAT 58.366 50.000 0.34 0.00 0.00 3.41
265 266 1.410004 AAGGCGTCCGATATCTTCCA 58.590 50.000 0.34 0.00 0.00 3.53
266 267 2.223971 TGAAAGGCGTCCGATATCTTCC 60.224 50.000 0.34 0.00 0.00 3.46
267 268 2.795470 GTGAAAGGCGTCCGATATCTTC 59.205 50.000 0.34 0.00 0.00 2.87
268 269 2.798499 CGTGAAAGGCGTCCGATATCTT 60.798 50.000 0.34 0.00 0.00 2.40
269 270 1.269102 CGTGAAAGGCGTCCGATATCT 60.269 52.381 0.34 0.00 0.00 1.98
270 271 1.129326 CGTGAAAGGCGTCCGATATC 58.871 55.000 0.00 0.00 0.00 1.63
271 272 0.874607 GCGTGAAAGGCGTCCGATAT 60.875 55.000 0.00 0.00 38.26 1.63
272 273 1.517694 GCGTGAAAGGCGTCCGATA 60.518 57.895 0.00 0.00 38.26 2.92
273 274 2.813908 GCGTGAAAGGCGTCCGAT 60.814 61.111 0.00 0.00 38.26 4.18
281 282 2.487762 TGGCTATTTTCTGCGTGAAAGG 59.512 45.455 5.15 2.79 44.40 3.11
282 283 3.492313 GTGGCTATTTTCTGCGTGAAAG 58.508 45.455 5.15 0.00 44.40 2.62
283 284 2.227865 GGTGGCTATTTTCTGCGTGAAA 59.772 45.455 1.28 1.28 42.33 2.69
284 285 1.810151 GGTGGCTATTTTCTGCGTGAA 59.190 47.619 0.00 0.00 0.00 3.18
285 286 1.448985 GGTGGCTATTTTCTGCGTGA 58.551 50.000 0.00 0.00 0.00 4.35
286 287 0.096976 CGGTGGCTATTTTCTGCGTG 59.903 55.000 0.00 0.00 0.00 5.34
287 288 0.036765 TCGGTGGCTATTTTCTGCGT 60.037 50.000 0.00 0.00 0.00 5.24
288 289 1.083489 TTCGGTGGCTATTTTCTGCG 58.917 50.000 0.00 0.00 0.00 5.18
289 290 3.569250 TTTTCGGTGGCTATTTTCTGC 57.431 42.857 0.00 0.00 0.00 4.26
307 308 8.755696 TTGCTGCGATTATCTTAACAATTTTT 57.244 26.923 0.00 0.00 0.00 1.94
308 309 7.489113 CCTTGCTGCGATTATCTTAACAATTTT 59.511 33.333 0.00 0.00 0.00 1.82
309 310 6.974622 CCTTGCTGCGATTATCTTAACAATTT 59.025 34.615 0.00 0.00 0.00 1.82
310 311 6.498304 CCTTGCTGCGATTATCTTAACAATT 58.502 36.000 0.00 0.00 0.00 2.32
311 312 5.506317 GCCTTGCTGCGATTATCTTAACAAT 60.506 40.000 0.00 0.00 0.00 2.71
312 313 4.201910 GCCTTGCTGCGATTATCTTAACAA 60.202 41.667 0.00 0.00 0.00 2.83
316 317 3.393800 GAGCCTTGCTGCGATTATCTTA 58.606 45.455 0.00 0.00 39.88 2.10
325 326 3.349006 AACACGAGCCTTGCTGCG 61.349 61.111 0.00 0.11 39.88 5.18
329 330 1.663161 GCTTTACAACACGAGCCTTGC 60.663 52.381 0.00 0.00 0.00 4.01
331 332 0.865769 CGCTTTACAACACGAGCCTT 59.134 50.000 0.00 0.00 0.00 4.35
353 354 0.320421 ACAAGCCTCGTGTTACGCAT 60.320 50.000 0.00 0.00 42.21 4.73
354 355 0.531090 AACAAGCCTCGTGTTACGCA 60.531 50.000 0.00 0.00 42.21 5.24
364 365 0.038801 GAGCCTTTGCAACAAGCCTC 60.039 55.000 0.00 0.00 44.83 4.70
376 377 1.377725 CATGAGCCACCGAGCCTTT 60.378 57.895 0.00 0.00 0.00 3.11
380 381 3.200593 CTGCATGAGCCACCGAGC 61.201 66.667 0.00 0.00 41.13 5.03
393 394 3.726557 AAGTCATTTGATCCCTCTGCA 57.273 42.857 0.00 0.00 0.00 4.41
394 395 5.049818 CGATAAAGTCATTTGATCCCTCTGC 60.050 44.000 0.00 0.00 0.00 4.26
395 396 6.283694 TCGATAAAGTCATTTGATCCCTCTG 58.716 40.000 0.00 0.00 0.00 3.35
396 397 6.485830 TCGATAAAGTCATTTGATCCCTCT 57.514 37.500 0.00 0.00 0.00 3.69
413 414 2.188469 GGGGCAGCCGTTCGATAA 59.812 61.111 5.00 0.00 0.00 1.75
414 415 4.215742 CGGGGCAGCCGTTCGATA 62.216 66.667 5.00 0.00 0.00 2.92
430 431 4.442375 AATCCTATAAGATCGACAGCCG 57.558 45.455 0.00 0.00 40.25 5.52
431 432 6.183360 ACGATAATCCTATAAGATCGACAGCC 60.183 42.308 9.34 0.00 41.42 4.85
434 435 6.036844 CGGACGATAATCCTATAAGATCGACA 59.963 42.308 9.34 0.00 41.42 4.35
487 488 3.897239 TGAGAGTCCTTGCTTTTTCCAA 58.103 40.909 0.00 0.00 0.00 3.53
489 490 6.765915 ATTATGAGAGTCCTTGCTTTTTCC 57.234 37.500 0.00 0.00 0.00 3.13
496 497 5.007136 GTGTAGCAATTATGAGAGTCCTTGC 59.993 44.000 0.00 0.00 39.32 4.01
507 508 5.983118 TCGTACCTGATGTGTAGCAATTATG 59.017 40.000 0.00 0.00 0.00 1.90
515 516 2.163613 TGTGCTCGTACCTGATGTGTAG 59.836 50.000 0.00 0.00 0.00 2.74
516 517 2.164338 TGTGCTCGTACCTGATGTGTA 58.836 47.619 0.00 0.00 0.00 2.90
553 554 6.420008 CCTCGCGTAACTAAACTTGCTATAAT 59.580 38.462 5.77 0.00 0.00 1.28
583 584 5.229423 TGTCATGCTTGCAACCTAAAATTC 58.771 37.500 0.00 0.00 0.00 2.17
586 587 4.099266 AGTTGTCATGCTTGCAACCTAAAA 59.901 37.500 23.38 0.00 39.03 1.52
618 619 6.254589 CGCAAGTTTCTGTCAAAAATAAACCA 59.745 34.615 0.00 0.00 31.87 3.67
643 644 0.994263 GCAAATTTCAGCGGCACATC 59.006 50.000 1.45 0.00 0.00 3.06
644 645 0.604578 AGCAAATTTCAGCGGCACAT 59.395 45.000 1.45 0.00 35.48 3.21
649 650 3.067180 ACATGGATAGCAAATTTCAGCGG 59.933 43.478 0.00 0.00 35.48 5.52
663 664 3.054728 ACAATTCCGGTCACACATGGATA 60.055 43.478 0.00 0.00 0.00 2.59
698 699 3.928727 AATGAAAGTGCCACATGTCTG 57.071 42.857 0.00 0.00 0.00 3.51
701 702 2.037511 CCCAAATGAAAGTGCCACATGT 59.962 45.455 0.00 0.00 0.00 3.21
703 725 2.607499 TCCCAAATGAAAGTGCCACAT 58.393 42.857 0.00 0.00 0.00 3.21
732 754 7.455891 TGATCTGTATATGTTGAATCCATGCT 58.544 34.615 0.00 0.00 0.00 3.79
758 780 7.225734 TGTTTTGAGATTTTGTGACGTGATCTA 59.774 33.333 0.00 0.00 0.00 1.98
759 781 6.038161 TGTTTTGAGATTTTGTGACGTGATCT 59.962 34.615 0.00 0.00 0.00 2.75
760 782 6.198687 TGTTTTGAGATTTTGTGACGTGATC 58.801 36.000 0.00 0.00 0.00 2.92
761 783 6.038161 TCTGTTTTGAGATTTTGTGACGTGAT 59.962 34.615 0.00 0.00 0.00 3.06
762 784 5.352846 TCTGTTTTGAGATTTTGTGACGTGA 59.647 36.000 0.00 0.00 0.00 4.35
763 785 5.568482 TCTGTTTTGAGATTTTGTGACGTG 58.432 37.500 0.00 0.00 0.00 4.49
764 786 5.811399 TCTGTTTTGAGATTTTGTGACGT 57.189 34.783 0.00 0.00 0.00 4.34
779 801 7.386848 TCGGAGTTCTATTCGAATTTCTGTTTT 59.613 33.333 17.19 0.00 33.45 2.43
796 818 5.414765 AGTTTTGTCTTTGTTTCGGAGTTCT 59.585 36.000 0.00 0.00 0.00 3.01
863 891 2.974099 TCTTCTCTTGTTTTCCCCGGTA 59.026 45.455 0.00 0.00 0.00 4.02
974 1002 4.135153 CGGTGGAGTGGAGGCGAG 62.135 72.222 0.00 0.00 0.00 5.03
1035 1063 2.983592 GTGGGGCTGGAAACGGTG 60.984 66.667 0.00 0.00 39.64 4.94
1040 1068 2.451493 TGGGAGTGGGGCTGGAAA 60.451 61.111 0.00 0.00 0.00 3.13
1077 1105 2.847234 TGTGTCAGGGCCTCGGTT 60.847 61.111 0.95 0.00 0.00 4.44
1167 1195 2.698788 TAGGAGGAGCCCCGAGGA 60.699 66.667 0.00 0.00 37.37 3.71
1206 1234 4.421479 CACCCGAGAAGCGACGCT 62.421 66.667 18.46 18.46 44.57 5.07
1570 1598 0.517316 GCGCAGTCCACAGTTAAAGG 59.483 55.000 0.30 0.00 0.00 3.11
1592 1620 3.955650 ACTACCACACTATTTCAGCGT 57.044 42.857 0.00 0.00 0.00 5.07
1664 1693 2.866762 CGCAGGTTCTACTCAAATAGCC 59.133 50.000 0.00 0.00 0.00 3.93
1665 1694 3.782046 TCGCAGGTTCTACTCAAATAGC 58.218 45.455 0.00 0.00 0.00 2.97
1688 1734 5.977635 TGTACAGTAACAGATAGCATTGCT 58.022 37.500 16.63 16.63 43.41 3.91
1755 1802 5.299531 TCGTGACATCTATCTAAGACTTGGG 59.700 44.000 0.00 0.00 36.93 4.12
1774 1898 4.250464 GACATTGGAACAGGTTATCGTGA 58.750 43.478 0.67 0.00 42.39 4.35
1792 1916 2.105477 ACTGCTGTTTCTCACTGGACAT 59.895 45.455 0.00 0.00 0.00 3.06
1796 1920 2.245159 TGACTGCTGTTTCTCACTGG 57.755 50.000 0.00 0.00 0.00 4.00
1953 2790 8.407832 CCTATCTGATATCTCTATGTTGAGCAG 58.592 40.741 3.98 0.00 34.29 4.24
2049 3048 1.656652 ATGTTCTACGGCATGCACTC 58.343 50.000 21.36 0.51 0.00 3.51
2100 3261 6.092122 TCAGTAATACAGAAAATCAACAGCCG 59.908 38.462 0.00 0.00 0.00 5.52
2244 3422 3.241067 GGAACGCCAACTACTGTGATA 57.759 47.619 0.00 0.00 0.00 2.15
2265 3443 1.098050 ATGGCAAGCGATCAAACTCC 58.902 50.000 0.00 0.00 0.00 3.85
2307 3485 2.922740 TAGGGTCCAGTGTTTGTGTC 57.077 50.000 0.00 0.00 0.00 3.67
2308 3486 3.137544 TGAATAGGGTCCAGTGTTTGTGT 59.862 43.478 0.00 0.00 0.00 3.72
2310 3488 4.202567 ACATGAATAGGGTCCAGTGTTTGT 60.203 41.667 0.00 0.00 0.00 2.83
2311 3489 4.335416 ACATGAATAGGGTCCAGTGTTTG 58.665 43.478 0.00 0.00 0.00 2.93
2312 3490 4.042809 TGACATGAATAGGGTCCAGTGTTT 59.957 41.667 0.00 0.00 0.00 2.83
2314 3492 3.181329 TGACATGAATAGGGTCCAGTGT 58.819 45.455 0.00 0.00 0.00 3.55
2315 3493 3.912496 TGACATGAATAGGGTCCAGTG 57.088 47.619 0.00 0.00 0.00 3.66
2316 3494 4.104086 TCTTGACATGAATAGGGTCCAGT 58.896 43.478 0.00 0.00 0.00 4.00
2326 3527 3.015327 GGCAGCTTCTCTTGACATGAAT 58.985 45.455 0.00 0.00 0.00 2.57
2338 3539 2.619074 GGTGGAATACAAGGCAGCTTCT 60.619 50.000 0.00 0.00 0.00 2.85
2352 3553 1.340991 CCAATCTTCCGGTGGTGGAAT 60.341 52.381 0.00 0.00 46.53 3.01
2395 3596 4.018415 ACAATACTAACTGACTGGGCCAAT 60.018 41.667 8.04 0.00 0.00 3.16
2418 3619 4.281941 CCTGATGACGGATTGAGGATAGAA 59.718 45.833 0.00 0.00 0.00 2.10
2431 3632 3.594603 ACAAGAAGTACCTGATGACGG 57.405 47.619 0.00 0.00 0.00 4.79
2433 3634 5.758296 TGTTGAACAAGAAGTACCTGATGAC 59.242 40.000 0.00 0.00 0.00 3.06
2441 3642 6.854381 CGGGTAAAATGTTGAACAAGAAGTAC 59.146 38.462 0.62 1.36 0.00 2.73
2444 3645 4.679654 GCGGGTAAAATGTTGAACAAGAAG 59.320 41.667 0.62 0.00 0.00 2.85
2489 3690 5.536497 AACCTTCCCCTCACTTCATTTAT 57.464 39.130 0.00 0.00 0.00 1.40
2492 3693 3.903530 AAACCTTCCCCTCACTTCATT 57.096 42.857 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.