>input_sequence_77174
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-------------------------------------------------------------------ATGGCCGACGCTA
AATCCAAAGGCCGAGCACCGACCACCGTTTCCAGCCCCACTCCCACCCCCACATGGGCGCAACGAACCGAGGCCCTGACA
CACATCCTGACCCACCCCTCCCACTCGCCGTCGCTCCACTCGCAGCTCTTCCTGGCGTCCCGCGTCCCGTGCCCTCCTCG
GGGCTCCTCCTACCCGCCCTTCCTCTGCCCCGGAGCGTCGCTTCTCGGGTGGGCCCTCACCTCCGTCTTCCTCCCCCGCG
CCGCGCGCCTTGGCCTGCCGCCTTCGTCCTGGCGCTCCCGGTGCCCCTTCCAGCTCCCGCCGCCGCTCGTGCCCTCCGCC
GGCATCGAGCCGGCACCGGAGCGGTGGAGCGAGGCCGAGCTCCAGGGGTACGCGCAGCGGCGGCGGGCTCGGAGGGGGCC
CATGAGGACGCGGCCGCCGGTGTCCATGGCGGGGGTGGTGCTGACGACCGTGCCCAACATCGTGATCATCGTGGTCATCA
TGCGGGAGCTCTTCTGGGTCCGGCCTGGCCGCTTCTGA------------------------------------------
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>chr2D_1_TraesCS2D01G334000
GAGCGAAAGATGGCTTAAAGGATCTGAGAGCATTTTATGTTTTCCTGTGTTTAGAGCGACTTTGTCTATAGAAATTATGA
AATTTTTATAGGAAATACTTCTATTTAGTCGGCCAATTGGGCGCGAAACGTATGGCGCGTTATCCATGTGCCGCATGCCC
TGACTGAATCATCTACTACATATCTGTTGCTGCAAGATGAGCGGACGCAACATAAACACAATGTAACATGAGGCTTGTTG
CAAGTTGCAAAAGCTCATAGGCTCATGGAAGATATCGGACGCCTTTCACGCAGAAAATAGCCACCGAAAAAATTGTTAAG
ATAATCGCAGCAAGGCTCGTGTTGTAAAGCGTTATGCGTAACACGAGGCTTGTTGCAAAGGCTCGGTGGCTCATGCAGAG
GGATCAAATGACTTTATCGAACGGCTGCCCCGGCTGTCGATCTTATAGGATTATCGTCCGATCAATGTGTAGCGTCCGCT
ATTTTTTTTGGAAAAAGCAAGGACTCTCATAATTGCTACACATCAGGTACGAGCACATGACAAATTGAATGTTATTATAG
CAAGTTTAGTTACGCGAGGATGAGAATTTTAGGTTGCAAGCATGACAACTTCGTGCTTTGGTTTATTTTTGACAGAAACT
TGCGATGTGCCGCTGAAATTTGCTATCCATGTGTGACCGGAATTGTCATAAAAAAACTCAGAC-----------------
----ATGTGGCACTTTCATTTGGGAAAAACAATAGCATGGATTCAACATATACAGATCATAGATCACGTCACAAAATCTC
AAAACAGAAATTCGAATAGAACTCCGAAACAAAGACAAAACTAACTATGAATTCAGCCATATCTT-----ATACTCTGGC
TGCGCCGA-ATACCGGGGAAAACAAGAGAAGAAGGCGTATTCCGCATTTACGTGTTCGCCGGAACGGCTCTTCTTTATCC
TCTCGCCGGGCAACCGACGCCGTCCACTCCGGCTTCGCCAGCTCGCCTCCACTCCACCGCCGTCGCCATGGCCGACGCTA
AATCCAAAGGCCGAGCACCGACCACCGTTTCCAGCCCCACTCCCACCCCCACATGGGCGCAACGAACCGAGGCCCTGACA
CACATCCTGACCCACCCCTCCCACTCGCCGTCGCTCCACTCGCAGCTCTTCCTGGCGTCCCGCGTCCCGTGCCCTCCTCG
GGGCTCCTCCTACCCGCCCTTCCTCTGCCCCGGAGCGTCGCTTCTCGGGTGGGCCCTCACCTCCGTCTTCCTCCCCCGCG
CCGCGCGCCTTGGCCTGCCGCCTTCGTCCTGGCGCTCCCGGTGCCCCTTCCAGCTCCCGCCGCCGCTCGTGCCCTCCGCC
GGCATCGAGCCGGCACCGGAGCGGTGGAGCGAGGCCGAGCTCCAGGGGTACGCGCAGCGGCGGCGGGCTCGGAGGGGGCC
CATGAGGACGCGGCCGCCGGTGTCCATGGCGGGGGTGGTGCTGACGACCGTGCCCAACATCGTGATCATCGTGGTCATCA
TGCGGGAGCTCTTCTGGGTCCGGCCTGGCCGCTTCTGAGCCATTTAGGTAAGCGGATGCTCACGCAGCTGAGCGAGTCCT
TTAACTGTGGACTGCGCGTACGCTGAAATAGTGTGGTAGTAGCATATTTGTTATACAAAACA-ATCGTCGACTGCAGCTT
GCGAAATTGGGAGGCTA-----------------TTTGAGTAGAACCTGCGAAAGCAATGCTATCTGTTACT-GTACAAC
TTTTATCTGCAGATGTTGCTGAACTAGGCTTTTCCAAAGCACC-------------------------------------
----------------------------------------CAAGTCTTAGATAGATGTCACGATAACCTGTTCCAATGTC
---------------------------CAGTGAGAAACAGCAGTCAATGTATGACAGAGCAATGCTGGTATATTTGTTTC
GTCATAGTTATAAATTATATA-----------------------------------------------------------
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-------------------------------------------------------------------GCATATAAAAGGC
CCAAGGCATGTGAAGACAGATCTCAATTAACATCCAAGCAGTTAGAATTTGACAATTCGAGGTGTATTACTGCTCAACA-
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-TAGAGATATCAGATAGGGGTGATGTGGCACAACAGTGTGTCACTTATTGGAGCATGGTGTTACATGAGAACTGAGGATT
CTTGTTGGAGTGCATGCCGTAGAACAT-----------------------------------------------------
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--------------------------AGATGTATATTAGCTTT---AGCCATCTCTTTCGCGGCTGT-------------
TGATTTTCTGTATTACTGAATAGAACTGATGTTG----GGTGCAGGATCAGGAGGCACATGGATCTCATCTGCTCCATCA
AGCATATGGGTCATCTTATGCATTTTAGGGCGCGTCGCGTCGCTGGCTCCTACTATCCTGTTATCACAGTAGTTGGCGTT
CCGGAGTTTGATCGCTTGCCATAGTCAATGCGCTTACAGGTTGAGACACAAACA-----------------------CTG
GACCCTATTCATGTCAAGAGAAGCTGCCTTGTATTCCACCACCGGAAGATTGGTACATCCAGCCCAGTAGCGGTCATTGG
CCCAGTCAGTTAGTATTGTTCTATCCTCAATCCGTCATCAGGTACTTCTTGTTCAACATTTTACCCGCAAGATACGAGCT
CCAAAAAGGATAAATGAAGTGAGGGGAAGGTTTACAAGGATAGAGTGTCCA
>chr2B_305
CGAAAAAGC-----------------------------------------------------------------------
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-------------------------------------------------------------------------TGTAAAG
ATAATTGCAACGAGGCTCGTGTTGTAAAGTGTTGAGCGTAACACAAGGCTTGTTGCGAAGACTCGGTGGCTCACATGGAG
GGATCAAATGACTCCATCGAACGGCTGCCCGCGCAGTCGATCTTATAGGATTATCGTCCGATCAATGTGTAGGGTCCGCT
AATTTTTCTAGAAAAAACAAGGACCCTAATAATTGTCACATGTCATGTACGAGCACATGACAAATTGAATGTTTTTATAG
CAAGTTTAGTTACGTGAGGATGGCAGCTTTAGGTTGCAAGCATGACAACTTCGTGCTTCGGTTTGTTTTTGACAGAAACT
TGCCGTATGTCGCTGAAATTTAACATCCATGCGTGACTAGAATTGTCATCGAAAAGCTTAGGC-----------------
----CTATGACACTTTCATTTGGGAAAAACTGTGGCATGGATTCAACATATACAGATCA-------CGTCA-AAAATCTC
-AAACAGAAATTCGAATCGAACTCCGAAACAAAGACAAAACTAACTACGAATTCAGCCATATCTTCGTGGATACTCTGGC
TGCGCCGAGACACCGGGGAGAACAAGAGAAGAAGGCGTATTCCGCATTTACGTGTTCGCCGGAACGGCTCTTCTTTATCC
TCTCGCCGGGCAACCGACGCCGTCCACTCCGGCTTCGCCAGTTCGCCTCCT-----CCGCCGTCGCCATGGCCGACGCTA
AATCCCAAGGCCGAGCAGCGACTACCGCTCTCAGTTCCACTCCCACTCCCACATGGGCGGAACGGACCGAGGCCCTAACG
CACATCCTGACCCACCCCTCCCACTCGCCGTCGCTCCACTCGCAGCTCTTCCTCGCGTCCCGCGTCCCGTGCCCACCTCG
GGGCTCCTCCTACCCGCCCTTCCTCTGCCCCGGCGCGTCGCTCCTGCGGTGGGCACTCACCTCCGTCTTCCTGCCCCGCG
CGGCCCGCCTTGGCCTGCCGCCTTCGTCCTGGCGCTCCCGGTGCCCCTTTCAGCTCCCGCCGCCGCTCGTGCCCTCCGCC
GGCATCGAGACGGCACCGGAGCGGTGGAGCGAGGCCGAGCTCCGGGGGTACGCGCAGCGGCGGCGGGCTCGGAGGGGGCC
CATGAGGACGCGGCCGCCGGTGTCCATGGCGGGGGTGGTGCTGACGACCGTGCCCAACATCGTGATCATCGTGGTCATCA
TGCGGGAGCTCTTCTGGGTCCGGCCTGGCCGTTTCTGAGCCATTCAGGTAAGCGGATGCTCACGCAGCTGAGTGAGTGCT
TTAACTGTGGACTGCGCGTGCGCTGAAATAGTGTGGTAGTAGCATATTTGTTATACAAAACA-GTCGTCGACTGCAGCTT
GCGAATTGGGAGT-CTA-----------------TTTGGGTAGAACCTGCGAATGCAATGCTATCTGTTAC------AAC
TTTTATATGCAGATGTTGCTGAACTAGGCTTTTCCAAAGCAACAAAATCT------------------------------
----------------------------------------------TTAGATAGATGCCACGATAACCGGTTCCAGTGCT
CAGTGAGAATCCGCCTAAAAAAATGTTCAGTGAGAAACAGCAGTCAATGTATGACAGAGCAATGCTGATTTTTTTTTC-C
GTCGTAGTTTTAAATTATATA-----------------------------------------------------------
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-------------------------------------------------------------------GCATATAAAAGGC
CCAAGGCATGTGAAGACAGATCTCAATTAACATCCAAGCAGTTAGAATTTGACAATTCGAGGCATATTATTGCTCAACA-
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-TAGAGATATCAGATAGGGGTGATGTGGCACAACAGTGTGTCACTTATTGGAGCATGGTGTTACATGAGAACTGCGGATT
CTTGTTGAAGTGCATGCCATAGGACATACTCCCTCCGTTTCTAAATATAAGACCTTTTAGAGATTTCAATACGAGCTACA
TACGGATGTATATAGACATATTTTAGAGTGTAGATTCACTCATTTGCTCTGTATGTAATCCGCATTGGGACCTCTATAAA
GCCTTATATTTAGGAACGGAGGGAGCAGATGTATATTAGCTTT---AGCCATCTCTTTCGAGACTGCATGTTATTTACGG
TGATTTTCTGTATTACTGAATAGAACTGATTGGGCGCAGGTGCAGGATCACGAGGCACATGGATCTCATCTTCTCCATCA
AGCATATGGGTCATACTATGCATTTTAGGGTGCGTCGCGTCGCTGGCTCCTACTATCCTGTCATCACAGTAGCTGGCGTT
CCTGAGTTTGATCGCTTGCCATAGTCAATGCGCTTA--------------------------------------------
---------CATGTCAAGGGAAGCTGCCTTGTGTTCCACCACCGGAAGATTGGTACATCCAGCCCAGTAGCGGTCGTTGG
CCCAGTCAGTTAGTATTGCTCTATCCTCAATTCCTCATCAGTTATTTCTTGTTCAACATTTTACCCGCAATATACGAGCT
CCAAAAAGG----ATGAAGTGAGGGGAAGGTTTACAAGGATAGAGTGTCCA
>chr2A_498
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-----------------CAAGGACTCTGATAATTGTCACACATCAGGTACGGGCACATGGCAAATCAAACGTTTTTGTAG
CAAGCTTAGTTAAGCAAGGATGATAACTTTAGGTTGTAAGCATGACAACTTCCTGCTTCAATTTATTTTTGATAGAAACT
TGCAGTGTGTCGTTGAAATTTGCCATCCATGCATGATTGGAATTGTCATCGAAAAACGTCAGAGTCGGAGTGTCACCCAC
CTGGCTGTGGCACTTTCATTTGGGAAAAACAATGGCATGGATTCAACATATACAAATCA-------CGTCACAAAATCTC
-AAACAGAAATTCGAATCTATCTCCGAAACAAAGACAAAACTAACTATGAATTCAGCCATATCTACGTGGATACTCTGGC
TGCGCCGA-ACACCGGGGAAAACAAGACAAGAAGGCGTATTCCGCATTTACGTGTTCGCCGGAACGGCTCTTCTTTATCC
TCTCGCCGGGCAACCGACGCCGTCCACTCCGGCTTCGCCAGTTCGCCTCCTT-----CGCCGTCGCCATGGCCGACGCTA
AATCCCAAGGCCGAGCACCGACTACCGCTCCCGCTCCCGCTCCCGCTCCCACATGGGCGCAACGGACCGAGGCCCTGACA
CACATCCTGACCCACCCGTCCCACTCGCCGTCGCTCCACTCGCAGCTCTTCCTCGCGTCCCGCGTCCCGTGCCCACCTCG
GGGCTCCTCCTACCCGCCTTTCCTCTGCCCCGGCGCGTCGCTCCTCCGGTGGGCCCTCACCTCCGTCTTCCTGCCCCGCG
CCGCGCGCCTTGGCCTGCCGCCTTCGTCCTGGCGCTCCCGGTGCCCCTTCCAGTTCCCGCCGCCGCTCGTGCCCTCCGCC
GGCATCGAGCCGGCACCGGAGCGGTGGACCGAGGCCGAGCTCCGGGGGTACGCGCAGCGGCGGCGGGCTCGGAGGGGGCC
CATGAGGACGCGGCCGCCGGTGTCCATGGCGGGGGTGGTGCTGACGACCGTGCCCAACATCGTGATCATCGTGGTCATCA
TGCGCGAGCTCTTCTGGGTCCGGCCTGGCCGCTTCTGAGCCATTCAGGTAAGCGGATGCTCACGCAGCCGTGCGAGTTCT
TCAACTGTGGACTGCGGTGCA-CTGACATTGTGTGATAGTAGCATATTTGTTATACAAAACAAATCGTCGACTGCAGCTT
GCGAAATTGTGACACTATTTCCAGCGTCTTCCAGTTTGGGTAGAACTTGTGAATGCAGTGTTATTTGTTACTCGTACAAC
TTTTAGCTGCAGATGTTGCTCAACTAGGCTTCTCCAAAGAGAAAGCATTCAAGTCTGAGATAGATGCTGCGATCACCTGT
TTTAGCTGCAGATGTTGCTGAACTAGCCTTCTCCAAAGCACAAGTCTGGGACAGATGCCGCGCTAACCTGTTCAACTGTT
CAGCGAGAAACAACA--------------------------AATCGATGTATGCTAGTGCAATTCTAATACATTTTGTCT
GTCATGCTAGTAAGACCCTTGTGCAATGCTAATAAAACAGAAGTTAAACATAGTGTAGTAGTAAGCTATAACTTTTTATG
TTTATCAAGTATGGACTATGGACAAAGGATGTAGTTACTTATTATATGCAAGACATATTGGGAGTCATAGGCCAGCCAAT
ATGAAGGTTATGATATCGAGGTCCGCTCACAAGATTCGATGAGCTTTGGCCGTTTGGCGTAAATAGGTAGCCATTGTTTT
GTGGATTTGGATTTTGACCTAGGTGGTGAAGATTGGAGATTGGCGGAGGGGATCAGGCGATGGGAGACGGCAGGAGCTAG
GAGGTGATGGGAGAGTGTTGCTTGCTGCTATGTTCATAAATTTTACATGGCCCTTTGTGAGGGCTGAAATGAGAGTGTCT
GAAAAGTAAAAAAAATAAAAAATTGAGGGAAGAATGTCTGAAAAGTAAAAACTAGTGATATCAGATAGGGAACTCTGCCT
ATGTTGTCTCAACATAGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACT
CAGCCACTCTTATGGAGATGAAACCCAAAAGATCCGGAATGATGATATACAAGATAGAGTTGGGGTAGCACCAATTGAAG
AGAAGCTTGTCCTACATCGTCTGAGATGGTTTGGGCATATTCAGCGCAGGCCTCTAGAAGCTCCAGTGCATAGCGGACGG
CTAAAGCGTGTGGAGATTGTCAAGAGAGGTCGGGGTTGACC---GAATTTGACATGGGAGGAGTCCGTTAAGAGAGACCT
GAAGGATTGGAGTATCACCAAAGAACTAGCTATGGACAGGGGTGCATGGAATCTTGCTATCCATGTGCCAGAGCCATGAG
TTGGTCGCGAGATCTTATGGGTTTCACCTCTAGCCTACCAGAACTTGTTTGGGACTAAAGGCTTTGTTGTTATTGTTGTT
GTAGAGATATCAGATAGGGGTAACGTGGCACCACAGTATGCCACCTATGGGAGCAGC---------GAGAACTGATAATT
CTTATTGAAGTGCATGTTG-------T-----------------------------------------------------
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--------------------------AGATGCATATTAGCTTTATTAGCCATCTTTTTCGAGTCTGCAAGTTAGTTACAG
TGATTTTCTGTATTACTGAATAGGACTGATGTTT----GGTGCAGGATCAGGAGGCACATGGATCTCAACTGCTCCATCA
AGCACCTGGGTCATCTTATGCATTTTAGGGCGTGTCGCTTGC-------------TCCTGTCATTGCAGTAGTTGGTGTT
CCCTGGTTCGATCACTTGCCATACTCAACCTATTTACAGGTTGACTCCACACACCGCAGTGCCACTGCCACAAACAGCTG
GACCCTCTTCATGTCAAGGGAAGCTGCCTTGTCTTCCAGCACCAGAAGATTGATATATCCA------------------G
CCCAGTCCGTTAGAATTGCTCTATCCTCATGAGA--------TATTTCTTGTTCAACATTTTACCTGCAAGATATGAGCT
CCAAAAAGGGTAGA-----TGAGGGGAAGGTTTACAAGGATAGAGCGTCCA
>SNPs
SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---
-----S---S-S-----------------S---SS---------S-----------S---S------------SSSS---
-------------SS---------------SS--S-------------------------------------S-------
-S-----S-S------S----------S-------SS------------------------------------S------
-----------------------S--S-------------------------------S---------------------
---SS----S-------------S-------S-----S-----------SS-------S--S------------------
----S----------------------------S-------------------------SSSSSSS--------------
S----------------S--------------------------------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------------S--------SSSSSS------------------------
-----S----------------S----S-S----S-----------S-----------------S---------------
-----------------------------------------------------S--------------------S-----
---------------------------------S--------S---S-------------------------S-------
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-------------------------------------------S------------------------------------
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--------------------------------------------S--------------------------------S--
-------------------S------------------------------------------------------------
------------SS------------------------S--------------S--------------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------S-----------------S---S
-------------------------------------------------------------------S-------S--S-
---------S----------------------------------------------------------------------
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--------------------------------------------------------------SS-----S----------
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-------S--------------S---------------------------------------------------------
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------------------------------------------------------------S-S---S-------------
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-------------------------------------------------------------S------------------
--S-----------------------------------------SS-SSS-SSS--------------------------
------S-----------S-------------S------------------------------------------S----
------------------S------------S-S-------S--S-----------------------------------
---------S--S--------------------------------------
>forward_147
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-----------------------------------------------ACGTATGGCGCGTTATCCAT-------------
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>reverse_1598
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-----------------------------------------------------------------------------CCT
TTAACTGTGGACTGCGC---------------------------------------------------------------
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