Multiple sequence alignment - TraesCS2D01G333400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G333400 chr2D 100.000 3128 0 0 1 3128 426948449 426945322 0.000000e+00 5777.0
1 TraesCS2D01G333400 chr2A 91.833 1702 81 24 516 2191 561551206 561552875 0.000000e+00 2320.0
2 TraesCS2D01G333400 chr2A 90.520 865 63 4 2273 3128 561552885 561553739 0.000000e+00 1125.0
3 TraesCS2D01G333400 chr2A 90.299 134 12 1 1 133 561550945 561551078 1.150000e-39 174.0
4 TraesCS2D01G333400 chr2A 88.889 81 8 1 119 198 561551097 561551177 7.140000e-17 99.0
5 TraesCS2D01G333400 chr2A 85.417 96 9 3 2545 2637 561553522 561553615 9.240000e-16 95.3
6 TraesCS2D01G333400 chr2B 92.714 1496 64 18 516 1988 503775862 503774389 0.000000e+00 2117.0
7 TraesCS2D01G333400 chr2B 95.344 451 18 3 2417 2866 503774331 503773883 0.000000e+00 713.0
8 TraesCS2D01G333400 chr2B 86.692 263 14 5 2887 3128 503773788 503773526 3.980000e-69 272.0
9 TraesCS2D01G333400 chr2B 91.176 136 12 0 1 136 503776122 503775987 5.330000e-43 185.0
10 TraesCS2D01G333400 chr2B 82.857 140 7 9 2582 2719 503773713 503773589 3.300000e-20 110.0
11 TraesCS2D01G333400 chr2B 88.372 86 10 0 2919 3004 503774196 503774111 1.530000e-18 104.0
12 TraesCS2D01G333400 chr2B 88.333 60 6 1 140 198 503775950 503775891 1.560000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G333400 chr2D 426945322 426948449 3127 True 5777.000000 5777 100.000000 1 3128 1 chr2D.!!$R1 3127
1 TraesCS2D01G333400 chr2A 561550945 561553739 2794 False 762.660000 2320 89.391600 1 3128 5 chr2A.!!$F1 3127
2 TraesCS2D01G333400 chr2B 503773526 503776122 2596 True 510.328571 2117 89.355429 1 3128 7 chr2B.!!$R1 3127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 513 0.105593 ATGAATCACGGCGCAGATCT 59.894 50.0 16.26 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2231 2307 0.104855 TGAGGCAATAGCTAGCGGTG 59.895 55.0 9.55 9.84 41.7 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.970691 ATTTGACAATACAAGAATGCAAGTAC 57.029 30.769 0.00 0.00 0.00 2.73
57 58 9.160496 AGAATGCAAGTACTGAAGAATAGAAAG 57.840 33.333 0.00 0.00 0.00 2.62
60 61 9.678260 ATGCAAGTACTGAAGAATAGAAAGATT 57.322 29.630 0.00 0.00 0.00 2.40
76 77 7.951347 AGAAAGATTCATATTTGAGGCAAGT 57.049 32.000 0.00 0.00 32.27 3.16
89 91 3.761218 TGAGGCAAGTGAACAGAAAAACA 59.239 39.130 0.00 0.00 0.00 2.83
103 105 5.105752 CAGAAAAACATGGGAAAACGACAA 58.894 37.500 0.00 0.00 0.00 3.18
133 135 1.900237 GCATGGAAAGAACGATGCAC 58.100 50.000 0.00 0.00 46.10 4.57
136 138 1.144969 TGGAAAGAACGATGCACGAC 58.855 50.000 14.18 8.40 45.77 4.34
176 212 9.803315 AAGAAAAGTAATTGGACAGAAGAAAAC 57.197 29.630 0.00 0.00 0.00 2.43
193 230 4.822350 AGAAAACCCGAAAAAGAAGAGGAG 59.178 41.667 0.00 0.00 0.00 3.69
198 235 3.502595 CCCGAAAAAGAAGAGGAGGAAAC 59.497 47.826 0.00 0.00 0.00 2.78
199 236 4.134563 CCGAAAAAGAAGAGGAGGAAACA 58.865 43.478 0.00 0.00 0.00 2.83
200 237 4.214332 CCGAAAAAGAAGAGGAGGAAACAG 59.786 45.833 0.00 0.00 0.00 3.16
201 238 5.057149 CGAAAAAGAAGAGGAGGAAACAGA 58.943 41.667 0.00 0.00 0.00 3.41
202 239 5.527582 CGAAAAAGAAGAGGAGGAAACAGAA 59.472 40.000 0.00 0.00 0.00 3.02
203 240 6.511929 CGAAAAAGAAGAGGAGGAAACAGAAC 60.512 42.308 0.00 0.00 0.00 3.01
204 241 5.638530 AAAGAAGAGGAGGAAACAGAACT 57.361 39.130 0.00 0.00 0.00 3.01
205 242 4.615588 AGAAGAGGAGGAAACAGAACTG 57.384 45.455 0.00 0.00 0.00 3.16
206 243 3.326297 AGAAGAGGAGGAAACAGAACTGG 59.674 47.826 6.76 0.00 34.19 4.00
207 244 1.981495 AGAGGAGGAAACAGAACTGGG 59.019 52.381 6.76 0.00 34.19 4.45
208 245 1.978580 GAGGAGGAAACAGAACTGGGA 59.021 52.381 6.76 0.00 34.19 4.37
209 246 1.700186 AGGAGGAAACAGAACTGGGAC 59.300 52.381 6.76 0.00 34.19 4.46
210 247 1.420138 GGAGGAAACAGAACTGGGACA 59.580 52.381 6.76 0.00 34.19 4.02
211 248 2.495084 GAGGAAACAGAACTGGGACAC 58.505 52.381 6.76 0.00 34.19 3.67
212 249 1.843851 AGGAAACAGAACTGGGACACA 59.156 47.619 6.76 0.00 34.19 3.72
213 250 2.241176 AGGAAACAGAACTGGGACACAA 59.759 45.455 6.76 0.00 34.19 3.33
214 251 2.618709 GGAAACAGAACTGGGACACAAG 59.381 50.000 6.76 0.00 34.19 3.16
215 252 3.541632 GAAACAGAACTGGGACACAAGA 58.458 45.455 6.76 0.00 34.19 3.02
216 253 2.918712 ACAGAACTGGGACACAAGAG 57.081 50.000 6.76 0.00 34.19 2.85
217 254 1.202698 ACAGAACTGGGACACAAGAGC 60.203 52.381 6.76 0.00 34.19 4.09
218 255 1.131638 AGAACTGGGACACAAGAGCA 58.868 50.000 0.00 0.00 0.00 4.26
219 256 1.071385 AGAACTGGGACACAAGAGCAG 59.929 52.381 0.00 0.00 0.00 4.24
220 257 1.070758 GAACTGGGACACAAGAGCAGA 59.929 52.381 0.00 0.00 0.00 4.26
221 258 1.131638 ACTGGGACACAAGAGCAGAA 58.868 50.000 0.00 0.00 0.00 3.02
222 259 1.202698 ACTGGGACACAAGAGCAGAAC 60.203 52.381 0.00 0.00 0.00 3.01
223 260 0.836606 TGGGACACAAGAGCAGAACA 59.163 50.000 0.00 0.00 0.00 3.18
224 261 1.421268 TGGGACACAAGAGCAGAACAT 59.579 47.619 0.00 0.00 0.00 2.71
225 262 1.808945 GGGACACAAGAGCAGAACATG 59.191 52.381 0.00 0.00 0.00 3.21
226 263 2.550855 GGGACACAAGAGCAGAACATGA 60.551 50.000 0.00 0.00 0.00 3.07
227 264 2.481952 GGACACAAGAGCAGAACATGAC 59.518 50.000 0.00 0.00 0.00 3.06
228 265 3.133691 GACACAAGAGCAGAACATGACA 58.866 45.455 0.00 0.00 0.00 3.58
229 266 3.136763 ACACAAGAGCAGAACATGACAG 58.863 45.455 0.00 0.00 0.00 3.51
230 267 2.483106 CACAAGAGCAGAACATGACAGG 59.517 50.000 0.00 0.00 0.00 4.00
231 268 2.105477 ACAAGAGCAGAACATGACAGGT 59.895 45.455 0.00 0.00 0.00 4.00
232 269 2.469274 AGAGCAGAACATGACAGGTG 57.531 50.000 0.00 0.00 0.00 4.00
233 270 0.801251 GAGCAGAACATGACAGGTGC 59.199 55.000 0.00 0.00 0.00 5.01
234 271 0.109153 AGCAGAACATGACAGGTGCA 59.891 50.000 0.00 0.00 33.24 4.57
235 272 0.953727 GCAGAACATGACAGGTGCAA 59.046 50.000 0.00 0.00 0.00 4.08
236 273 1.337703 GCAGAACATGACAGGTGCAAA 59.662 47.619 0.00 0.00 0.00 3.68
237 274 2.606308 GCAGAACATGACAGGTGCAAAG 60.606 50.000 0.00 0.00 0.00 2.77
238 275 2.030540 CAGAACATGACAGGTGCAAAGG 60.031 50.000 0.00 0.00 0.00 3.11
239 276 2.158623 AGAACATGACAGGTGCAAAGGA 60.159 45.455 0.00 0.00 0.00 3.36
240 277 2.363306 ACATGACAGGTGCAAAGGAA 57.637 45.000 0.00 0.00 0.00 3.36
241 278 2.880443 ACATGACAGGTGCAAAGGAAT 58.120 42.857 0.00 0.00 0.00 3.01
242 279 4.032960 ACATGACAGGTGCAAAGGAATA 57.967 40.909 0.00 0.00 0.00 1.75
243 280 4.406456 ACATGACAGGTGCAAAGGAATAA 58.594 39.130 0.00 0.00 0.00 1.40
244 281 4.832266 ACATGACAGGTGCAAAGGAATAAA 59.168 37.500 0.00 0.00 0.00 1.40
245 282 5.304101 ACATGACAGGTGCAAAGGAATAAAA 59.696 36.000 0.00 0.00 0.00 1.52
246 283 5.860941 TGACAGGTGCAAAGGAATAAAAA 57.139 34.783 0.00 0.00 0.00 1.94
247 284 5.841810 TGACAGGTGCAAAGGAATAAAAAG 58.158 37.500 0.00 0.00 0.00 2.27
248 285 5.596361 TGACAGGTGCAAAGGAATAAAAAGA 59.404 36.000 0.00 0.00 0.00 2.52
249 286 6.267471 TGACAGGTGCAAAGGAATAAAAAGAT 59.733 34.615 0.00 0.00 0.00 2.40
250 287 6.458210 ACAGGTGCAAAGGAATAAAAAGATG 58.542 36.000 0.00 0.00 0.00 2.90
251 288 6.267471 ACAGGTGCAAAGGAATAAAAAGATGA 59.733 34.615 0.00 0.00 0.00 2.92
252 289 7.153985 CAGGTGCAAAGGAATAAAAAGATGAA 58.846 34.615 0.00 0.00 0.00 2.57
253 290 7.116805 CAGGTGCAAAGGAATAAAAAGATGAAC 59.883 37.037 0.00 0.00 0.00 3.18
254 291 6.089417 GGTGCAAAGGAATAAAAAGATGAACG 59.911 38.462 0.00 0.00 0.00 3.95
255 292 6.640907 GTGCAAAGGAATAAAAAGATGAACGT 59.359 34.615 0.00 0.00 0.00 3.99
256 293 7.169140 GTGCAAAGGAATAAAAAGATGAACGTT 59.831 33.333 0.00 0.00 0.00 3.99
257 294 7.168972 TGCAAAGGAATAAAAAGATGAACGTTG 59.831 33.333 5.00 0.00 0.00 4.10
258 295 7.501515 CAAAGGAATAAAAAGATGAACGTTGC 58.498 34.615 5.00 0.00 0.00 4.17
259 296 6.325919 AGGAATAAAAAGATGAACGTTGCA 57.674 33.333 5.00 4.03 0.00 4.08
260 297 6.381801 AGGAATAAAAAGATGAACGTTGCAG 58.618 36.000 5.00 0.00 0.00 4.41
261 298 5.572896 GGAATAAAAAGATGAACGTTGCAGG 59.427 40.000 5.00 0.00 0.00 4.85
262 299 3.369546 AAAAAGATGAACGTTGCAGGG 57.630 42.857 5.00 0.00 0.00 4.45
263 300 2.270352 AAAGATGAACGTTGCAGGGA 57.730 45.000 5.00 0.00 0.00 4.20
264 301 1.523758 AAGATGAACGTTGCAGGGAC 58.476 50.000 5.00 0.00 0.00 4.46
265 302 0.321653 AGATGAACGTTGCAGGGACC 60.322 55.000 5.00 0.00 0.00 4.46
266 303 1.303317 ATGAACGTTGCAGGGACCC 60.303 57.895 5.00 0.59 0.00 4.46
267 304 3.047877 GAACGTTGCAGGGACCCG 61.048 66.667 5.00 1.05 0.00 5.28
268 305 3.819877 GAACGTTGCAGGGACCCGT 62.820 63.158 5.00 0.00 0.00 5.28
269 306 4.619227 ACGTTGCAGGGACCCGTG 62.619 66.667 4.40 5.25 35.22 4.94
271 308 3.948719 GTTGCAGGGACCCGTGGA 61.949 66.667 4.40 2.35 33.02 4.02
272 309 3.172106 TTGCAGGGACCCGTGGAA 61.172 61.111 4.40 10.83 39.18 3.53
273 310 2.534396 TTGCAGGGACCCGTGGAAT 61.534 57.895 4.40 0.00 37.26 3.01
274 311 1.202099 TTGCAGGGACCCGTGGAATA 61.202 55.000 4.40 0.00 37.26 1.75
275 312 1.202099 TGCAGGGACCCGTGGAATAA 61.202 55.000 4.40 0.00 33.02 1.40
276 313 0.182775 GCAGGGACCCGTGGAATAAT 59.817 55.000 4.40 0.00 33.02 1.28
277 314 1.418637 GCAGGGACCCGTGGAATAATA 59.581 52.381 4.40 0.00 33.02 0.98
278 315 2.039879 GCAGGGACCCGTGGAATAATAT 59.960 50.000 4.40 0.00 33.02 1.28
279 316 3.262405 GCAGGGACCCGTGGAATAATATA 59.738 47.826 4.40 0.00 33.02 0.86
280 317 4.263156 GCAGGGACCCGTGGAATAATATAA 60.263 45.833 4.40 0.00 33.02 0.98
281 318 5.243207 CAGGGACCCGTGGAATAATATAAC 58.757 45.833 4.40 0.00 0.00 1.89
282 319 4.020839 AGGGACCCGTGGAATAATATAACG 60.021 45.833 4.40 0.00 0.00 3.18
283 320 4.021192 GGGACCCGTGGAATAATATAACGA 60.021 45.833 0.00 0.00 36.38 3.85
284 321 5.166398 GGACCCGTGGAATAATATAACGAG 58.834 45.833 0.00 0.00 36.38 4.18
285 322 5.143376 ACCCGTGGAATAATATAACGAGG 57.857 43.478 0.00 0.00 36.38 4.63
286 323 4.020839 ACCCGTGGAATAATATAACGAGGG 60.021 45.833 0.00 0.00 36.38 4.30
287 324 4.221262 CCCGTGGAATAATATAACGAGGGA 59.779 45.833 0.00 0.00 36.38 4.20
288 325 5.105064 CCCGTGGAATAATATAACGAGGGAT 60.105 44.000 0.00 0.00 36.38 3.85
289 326 5.810587 CCGTGGAATAATATAACGAGGGATG 59.189 44.000 0.00 0.00 36.38 3.51
290 327 6.395629 CGTGGAATAATATAACGAGGGATGT 58.604 40.000 0.00 0.00 36.38 3.06
291 328 7.363181 CCGTGGAATAATATAACGAGGGATGTA 60.363 40.741 0.00 0.00 36.38 2.29
292 329 7.701078 CGTGGAATAATATAACGAGGGATGTAG 59.299 40.741 0.00 0.00 36.38 2.74
293 330 7.980099 GTGGAATAATATAACGAGGGATGTAGG 59.020 40.741 0.00 0.00 0.00 3.18
294 331 7.897030 TGGAATAATATAACGAGGGATGTAGGA 59.103 37.037 0.00 0.00 0.00 2.94
295 332 8.925338 GGAATAATATAACGAGGGATGTAGGAT 58.075 37.037 0.00 0.00 0.00 3.24
309 346 4.665833 TGTAGGATACACACACATAGGC 57.334 45.455 0.00 0.00 46.14 3.93
310 347 4.027437 TGTAGGATACACACACATAGGCA 58.973 43.478 0.00 0.00 46.14 4.75
311 348 3.827008 AGGATACACACACATAGGCAG 57.173 47.619 0.00 0.00 41.41 4.85
312 349 3.374764 AGGATACACACACATAGGCAGA 58.625 45.455 0.00 0.00 41.41 4.26
313 350 3.133003 AGGATACACACACATAGGCAGAC 59.867 47.826 0.00 0.00 41.41 3.51
314 351 2.647529 TACACACACATAGGCAGACG 57.352 50.000 0.00 0.00 0.00 4.18
315 352 0.679505 ACACACACATAGGCAGACGT 59.320 50.000 0.00 0.00 0.00 4.34
316 353 1.890489 ACACACACATAGGCAGACGTA 59.110 47.619 0.00 0.00 0.00 3.57
317 354 2.496070 ACACACACATAGGCAGACGTAT 59.504 45.455 0.00 0.00 0.00 3.06
318 355 3.056107 ACACACACATAGGCAGACGTATT 60.056 43.478 0.00 0.00 0.00 1.89
319 356 4.158949 ACACACACATAGGCAGACGTATTA 59.841 41.667 0.00 0.00 0.00 0.98
320 357 5.163447 ACACACACATAGGCAGACGTATTAT 60.163 40.000 0.00 0.00 0.00 1.28
321 358 5.402568 CACACACATAGGCAGACGTATTATC 59.597 44.000 0.00 0.00 0.00 1.75
322 359 5.302059 ACACACATAGGCAGACGTATTATCT 59.698 40.000 0.00 0.00 0.00 1.98
323 360 6.489022 ACACACATAGGCAGACGTATTATCTA 59.511 38.462 0.00 0.00 0.00 1.98
324 361 7.013942 ACACACATAGGCAGACGTATTATCTAA 59.986 37.037 0.00 0.00 0.00 2.10
325 362 7.865889 CACACATAGGCAGACGTATTATCTAAA 59.134 37.037 0.00 0.00 0.00 1.85
326 363 8.418662 ACACATAGGCAGACGTATTATCTAAAA 58.581 33.333 0.00 0.00 0.00 1.52
327 364 9.256477 CACATAGGCAGACGTATTATCTAAAAA 57.744 33.333 0.00 0.00 0.00 1.94
349 386 5.864418 AAAGGATAGGCAGACGTATAACA 57.136 39.130 0.00 0.00 0.00 2.41
350 387 5.864418 AAGGATAGGCAGACGTATAACAA 57.136 39.130 0.00 0.00 0.00 2.83
351 388 5.455056 AGGATAGGCAGACGTATAACAAG 57.545 43.478 0.00 0.00 0.00 3.16
352 389 4.281182 AGGATAGGCAGACGTATAACAAGG 59.719 45.833 0.00 0.00 0.00 3.61
353 390 4.280174 GGATAGGCAGACGTATAACAAGGA 59.720 45.833 0.00 0.00 0.00 3.36
354 391 5.047235 GGATAGGCAGACGTATAACAAGGAT 60.047 44.000 0.00 0.00 0.00 3.24
355 392 4.323553 AGGCAGACGTATAACAAGGATC 57.676 45.455 0.00 0.00 0.00 3.36
356 393 3.704566 AGGCAGACGTATAACAAGGATCA 59.295 43.478 0.00 0.00 0.00 2.92
357 394 4.161565 AGGCAGACGTATAACAAGGATCAA 59.838 41.667 0.00 0.00 0.00 2.57
358 395 4.270325 GGCAGACGTATAACAAGGATCAAC 59.730 45.833 0.00 0.00 0.00 3.18
359 396 4.868171 GCAGACGTATAACAAGGATCAACA 59.132 41.667 0.00 0.00 0.00 3.33
360 397 5.005779 GCAGACGTATAACAAGGATCAACAG 59.994 44.000 0.00 0.00 0.00 3.16
361 398 6.330278 CAGACGTATAACAAGGATCAACAGA 58.670 40.000 0.00 0.00 0.00 3.41
362 399 6.980978 CAGACGTATAACAAGGATCAACAGAT 59.019 38.462 0.00 0.00 0.00 2.90
363 400 6.980978 AGACGTATAACAAGGATCAACAGATG 59.019 38.462 0.00 0.00 0.00 2.90
364 401 6.640518 ACGTATAACAAGGATCAACAGATGT 58.359 36.000 0.00 0.00 0.00 3.06
365 402 7.103641 ACGTATAACAAGGATCAACAGATGTT 58.896 34.615 0.00 0.00 39.12 2.71
366 403 7.606456 ACGTATAACAAGGATCAACAGATGTTT 59.394 33.333 0.00 0.00 35.83 2.83
367 404 8.450964 CGTATAACAAGGATCAACAGATGTTTT 58.549 33.333 0.00 0.00 35.83 2.43
368 405 9.774742 GTATAACAAGGATCAACAGATGTTTTC 57.225 33.333 0.00 0.00 35.83 2.29
369 406 5.362556 ACAAGGATCAACAGATGTTTTCG 57.637 39.130 0.00 0.00 35.83 3.46
370 407 4.821805 ACAAGGATCAACAGATGTTTTCGT 59.178 37.500 0.00 0.00 35.83 3.85
371 408 5.995282 ACAAGGATCAACAGATGTTTTCGTA 59.005 36.000 0.00 0.00 35.83 3.43
372 409 6.655003 ACAAGGATCAACAGATGTTTTCGTAT 59.345 34.615 0.00 0.00 35.83 3.06
373 410 7.822334 ACAAGGATCAACAGATGTTTTCGTATA 59.178 33.333 0.00 0.00 35.83 1.47
374 411 8.664798 CAAGGATCAACAGATGTTTTCGTATAA 58.335 33.333 0.00 0.00 35.83 0.98
375 412 8.786826 AGGATCAACAGATGTTTTCGTATAAA 57.213 30.769 0.00 0.00 35.83 1.40
376 413 9.226606 AGGATCAACAGATGTTTTCGTATAAAA 57.773 29.630 0.00 0.00 35.83 1.52
391 428 9.884299 TTTCGTATAAAATAAACACGTATGTCG 57.116 29.630 0.00 0.00 38.45 4.35
402 439 2.761392 CGTATGTCGTCCCGTATTCA 57.239 50.000 0.00 0.00 34.52 2.57
403 440 3.069074 CGTATGTCGTCCCGTATTCAA 57.931 47.619 0.00 0.00 34.52 2.69
404 441 3.437428 CGTATGTCGTCCCGTATTCAAA 58.563 45.455 0.00 0.00 34.52 2.69
405 442 3.241322 CGTATGTCGTCCCGTATTCAAAC 59.759 47.826 0.00 0.00 34.52 2.93
406 443 2.816204 TGTCGTCCCGTATTCAAACA 57.184 45.000 0.00 0.00 0.00 2.83
407 444 3.109044 TGTCGTCCCGTATTCAAACAA 57.891 42.857 0.00 0.00 0.00 2.83
408 445 3.666274 TGTCGTCCCGTATTCAAACAAT 58.334 40.909 0.00 0.00 0.00 2.71
409 446 4.066490 TGTCGTCCCGTATTCAAACAATT 58.934 39.130 0.00 0.00 0.00 2.32
410 447 5.236282 TGTCGTCCCGTATTCAAACAATTA 58.764 37.500 0.00 0.00 0.00 1.40
411 448 5.699915 TGTCGTCCCGTATTCAAACAATTAA 59.300 36.000 0.00 0.00 0.00 1.40
412 449 6.204301 TGTCGTCCCGTATTCAAACAATTAAA 59.796 34.615 0.00 0.00 0.00 1.52
413 450 6.739550 GTCGTCCCGTATTCAAACAATTAAAG 59.260 38.462 0.00 0.00 0.00 1.85
414 451 6.649973 TCGTCCCGTATTCAAACAATTAAAGA 59.350 34.615 0.00 0.00 0.00 2.52
415 452 7.172875 TCGTCCCGTATTCAAACAATTAAAGAA 59.827 33.333 0.00 0.00 0.00 2.52
416 453 7.966204 CGTCCCGTATTCAAACAATTAAAGAAT 59.034 33.333 0.00 0.00 33.82 2.40
417 454 9.634163 GTCCCGTATTCAAACAATTAAAGAATT 57.366 29.630 0.00 0.00 35.56 2.17
454 491 8.945481 TTTGATCATTTTCTGTTCAAACATGT 57.055 26.923 0.00 0.00 43.58 3.21
455 492 7.933728 TGATCATTTTCTGTTCAAACATGTG 57.066 32.000 0.00 0.00 38.41 3.21
456 493 6.421501 TGATCATTTTCTGTTCAAACATGTGC 59.578 34.615 0.00 0.00 38.41 4.57
457 494 5.658468 TCATTTTCTGTTCAAACATGTGCA 58.342 33.333 0.00 0.00 38.41 4.57
458 495 6.282167 TCATTTTCTGTTCAAACATGTGCAT 58.718 32.000 0.00 0.00 38.41 3.96
459 496 5.970140 TTTTCTGTTCAAACATGTGCATG 57.030 34.783 10.31 10.31 44.15 4.06
460 497 4.915158 TTCTGTTCAAACATGTGCATGA 57.085 36.364 17.85 1.85 41.20 3.07
461 498 4.915158 TCTGTTCAAACATGTGCATGAA 57.085 36.364 17.85 14.53 41.20 2.57
462 499 5.456548 TCTGTTCAAACATGTGCATGAAT 57.543 34.783 17.85 4.64 41.20 2.57
463 500 5.463286 TCTGTTCAAACATGTGCATGAATC 58.537 37.500 17.85 14.53 41.20 2.52
464 501 5.009811 TCTGTTCAAACATGTGCATGAATCA 59.990 36.000 17.85 16.91 41.20 2.57
465 502 4.983538 TGTTCAAACATGTGCATGAATCAC 59.016 37.500 17.85 11.47 41.20 3.06
466 503 3.824151 TCAAACATGTGCATGAATCACG 58.176 40.909 17.85 2.07 41.20 4.35
467 504 2.918600 CAAACATGTGCATGAATCACGG 59.081 45.455 17.85 0.00 41.20 4.94
468 505 0.452987 ACATGTGCATGAATCACGGC 59.547 50.000 17.85 2.23 41.20 5.68
469 506 0.590481 CATGTGCATGAATCACGGCG 60.590 55.000 4.80 4.80 41.20 6.46
470 507 2.277501 GTGCATGAATCACGGCGC 60.278 61.111 6.90 0.00 0.00 6.53
471 508 2.745492 TGCATGAATCACGGCGCA 60.745 55.556 10.83 0.00 0.00 6.09
472 509 2.023741 GCATGAATCACGGCGCAG 59.976 61.111 10.83 8.25 0.00 5.18
476 513 0.105593 ATGAATCACGGCGCAGATCT 59.894 50.000 16.26 0.00 0.00 2.75
488 525 1.819229 CAGATCTACGGCTGCAGGT 59.181 57.895 17.12 8.41 0.00 4.00
499 536 0.517316 GCTGCAGGTGTTTTCGTAGG 59.483 55.000 17.12 0.00 0.00 3.18
503 540 1.588674 CAGGTGTTTTCGTAGGTGCA 58.411 50.000 0.00 0.00 0.00 4.57
517 555 4.794648 TGCATACCCCGCACCTGC 62.795 66.667 0.00 0.00 33.55 4.85
565 603 6.127479 ACAAAAGGCACACAAACTAAGATTGA 60.127 34.615 0.00 0.00 0.00 2.57
616 655 1.133790 AGCCAAAATCTGCAGCGATTC 59.866 47.619 9.47 0.00 32.69 2.52
681 720 5.246203 ACTCACTTTCACATCCTTGCTACTA 59.754 40.000 0.00 0.00 0.00 1.82
682 721 5.724328 TCACTTTCACATCCTTGCTACTAG 58.276 41.667 0.00 0.00 0.00 2.57
684 723 4.223923 ACTTTCACATCCTTGCTACTAGCT 59.776 41.667 9.49 0.00 42.97 3.32
685 724 4.392921 TTCACATCCTTGCTACTAGCTC 57.607 45.455 9.49 0.00 42.97 4.09
686 725 2.695666 TCACATCCTTGCTACTAGCTCC 59.304 50.000 9.49 0.00 42.97 4.70
812 857 0.613572 TCGTCCCATCACCAGCTGTA 60.614 55.000 13.81 0.00 0.00 2.74
1011 1063 4.103103 GCAAAAGACCTCGCCGCC 62.103 66.667 0.00 0.00 0.00 6.13
1258 1321 2.214181 CTCGTCTTCCCGGTCAGGTG 62.214 65.000 0.00 0.00 38.74 4.00
1293 1356 0.094216 CATGCGTTCGTTGCTCTCTG 59.906 55.000 0.00 0.00 0.00 3.35
1363 1426 2.262915 CTCCGCTCTTTGACGCCT 59.737 61.111 0.00 0.00 0.00 5.52
1418 1481 4.933064 GAGTCGAGATGGCGGCCG 62.933 72.222 24.05 24.05 36.34 6.13
1478 1541 1.467883 CCAAGGTACGTACGCGATGAA 60.468 52.381 15.93 0.00 42.00 2.57
1479 1542 1.580704 CAAGGTACGTACGCGATGAAC 59.419 52.381 15.93 4.23 42.00 3.18
1480 1543 0.247814 AGGTACGTACGCGATGAACG 60.248 55.000 15.93 18.74 45.66 3.95
1717 1782 2.279120 GCAGTCGCCCTGATCTCG 60.279 66.667 6.16 0.00 44.49 4.04
1718 1783 2.279120 CAGTCGCCCTGATCTCGC 60.279 66.667 0.00 0.00 44.49 5.03
1781 1846 1.375140 CAGCGTGAGTGAGCCATGT 60.375 57.895 0.00 0.00 0.00 3.21
1867 1935 4.458989 TCTGATTCCATTGTTGTTGTAGGC 59.541 41.667 0.00 0.00 0.00 3.93
1883 1957 6.877322 TGTTGTAGGCTACTAATCAAAGGAAC 59.123 38.462 24.07 15.64 0.00 3.62
1952 2026 8.635328 TGTTCTTCCCCTAAACAAACTTATTTC 58.365 33.333 0.00 0.00 30.39 2.17
1996 2070 1.997928 GCTTGCCTTCCCTGCGATTC 61.998 60.000 0.00 0.00 0.00 2.52
2031 2105 9.295214 TGTGTGGCGTTGATTTATTTATAAATG 57.705 29.630 18.98 2.90 41.59 2.32
2032 2106 9.509855 GTGTGGCGTTGATTTATTTATAAATGA 57.490 29.630 18.98 9.50 41.59 2.57
2053 2127 7.781324 ATGAATAACTGGTTCCTGTTTCAAT 57.219 32.000 16.71 4.98 32.08 2.57
2056 2130 6.976934 ATAACTGGTTCCTGTTTCAATTGT 57.023 33.333 16.71 0.00 32.08 2.71
2060 2134 5.163519 ACTGGTTCCTGTTTCAATTGTCTTG 60.164 40.000 5.13 0.00 0.00 3.02
2063 2137 6.378564 TGGTTCCTGTTTCAATTGTCTTGTAA 59.621 34.615 5.13 0.00 0.00 2.41
2070 2146 9.173939 CTGTTTCAATTGTCTTGTAAGTTGATC 57.826 33.333 5.13 0.00 0.00 2.92
2085 2161 5.847111 AGTTGATCCATGATTGTCCAATG 57.153 39.130 0.00 0.00 0.00 2.82
2086 2162 4.098960 AGTTGATCCATGATTGTCCAATGC 59.901 41.667 0.00 0.00 0.00 3.56
2172 2248 0.991920 TGTTAGGGCTGGGAAAGAGG 59.008 55.000 0.00 0.00 0.00 3.69
2188 2264 5.278022 GGAAAGAGGTCATCAACAGTTTGTC 60.278 44.000 0.00 0.00 34.02 3.18
2189 2265 4.696479 AGAGGTCATCAACAGTTTGTCT 57.304 40.909 0.00 0.00 34.02 3.41
2191 2267 4.101585 AGAGGTCATCAACAGTTTGTCTGA 59.898 41.667 1.79 0.00 46.27 3.27
2192 2268 4.384056 AGGTCATCAACAGTTTGTCTGAG 58.616 43.478 1.79 0.00 46.27 3.35
2193 2269 4.101585 AGGTCATCAACAGTTTGTCTGAGA 59.898 41.667 1.79 0.66 46.27 3.27
2195 2271 4.051237 TCATCAACAGTTTGTCTGAGACG 58.949 43.478 8.23 0.00 46.27 4.18
2196 2272 3.520290 TCAACAGTTTGTCTGAGACGT 57.480 42.857 8.23 0.00 46.27 4.34
2197 2273 3.186909 TCAACAGTTTGTCTGAGACGTG 58.813 45.455 8.23 5.45 46.27 4.49
2198 2274 2.930040 CAACAGTTTGTCTGAGACGTGT 59.070 45.455 8.23 6.06 46.27 4.49
2199 2275 3.247006 ACAGTTTGTCTGAGACGTGTT 57.753 42.857 8.23 0.00 46.27 3.32
2200 2276 2.930040 ACAGTTTGTCTGAGACGTGTTG 59.070 45.455 8.23 6.75 46.27 3.33
2201 2277 2.285220 CAGTTTGTCTGAGACGTGTTGG 59.715 50.000 8.23 0.00 46.27 3.77
2202 2278 1.597663 GTTTGTCTGAGACGTGTTGGG 59.402 52.381 8.23 0.00 34.95 4.12
2203 2279 0.531974 TTGTCTGAGACGTGTTGGGC 60.532 55.000 8.23 0.00 34.95 5.36
2204 2280 1.668151 GTCTGAGACGTGTTGGGCC 60.668 63.158 0.00 0.00 0.00 5.80
2205 2281 2.358737 CTGAGACGTGTTGGGCCC 60.359 66.667 17.59 17.59 0.00 5.80
2206 2282 3.164977 TGAGACGTGTTGGGCCCA 61.165 61.111 24.45 24.45 0.00 5.36
2207 2283 2.351276 GAGACGTGTTGGGCCCAT 59.649 61.111 29.23 10.77 0.00 4.00
2208 2284 1.303317 GAGACGTGTTGGGCCCATT 60.303 57.895 29.23 7.78 0.00 3.16
2209 2285 1.303317 AGACGTGTTGGGCCCATTC 60.303 57.895 29.23 22.07 0.00 2.67
2210 2286 1.303317 GACGTGTTGGGCCCATTCT 60.303 57.895 29.23 6.47 0.00 2.40
2211 2287 1.586154 GACGTGTTGGGCCCATTCTG 61.586 60.000 29.23 18.76 0.00 3.02
2212 2288 1.303236 CGTGTTGGGCCCATTCTGA 60.303 57.895 29.23 7.30 0.00 3.27
2213 2289 1.308069 CGTGTTGGGCCCATTCTGAG 61.308 60.000 29.23 11.70 0.00 3.35
2214 2290 0.967380 GTGTTGGGCCCATTCTGAGG 60.967 60.000 29.23 0.00 0.00 3.86
2219 2295 2.123982 GCCCATTCTGAGGCCTGG 60.124 66.667 12.00 4.27 43.76 4.45
2220 2296 2.599597 CCCATTCTGAGGCCTGGG 59.400 66.667 12.00 11.31 42.29 4.45
2221 2297 3.745546 CCATTCTGAGGCCTGGGA 58.254 61.111 12.00 4.79 0.00 4.37
2222 2298 2.238530 CCATTCTGAGGCCTGGGAT 58.761 57.895 12.00 0.00 0.00 3.85
2223 2299 0.178998 CCATTCTGAGGCCTGGGATG 60.179 60.000 12.00 13.32 0.00 3.51
2224 2300 0.549950 CATTCTGAGGCCTGGGATGT 59.450 55.000 12.00 0.00 0.00 3.06
2225 2301 0.549950 ATTCTGAGGCCTGGGATGTG 59.450 55.000 12.00 0.00 0.00 3.21
2226 2302 2.124403 CTGAGGCCTGGGATGTGC 60.124 66.667 12.00 0.00 0.00 4.57
2227 2303 2.611800 TGAGGCCTGGGATGTGCT 60.612 61.111 12.00 0.00 0.00 4.40
2228 2304 1.306911 TGAGGCCTGGGATGTGCTA 60.307 57.895 12.00 0.00 0.00 3.49
2229 2305 0.695462 TGAGGCCTGGGATGTGCTAT 60.695 55.000 12.00 0.00 0.00 2.97
2230 2306 0.250640 GAGGCCTGGGATGTGCTATG 60.251 60.000 12.00 0.00 0.00 2.23
2231 2307 1.900498 GGCCTGGGATGTGCTATGC 60.900 63.158 0.00 0.00 0.00 3.14
2232 2308 1.152902 GCCTGGGATGTGCTATGCA 60.153 57.895 0.00 0.00 35.60 3.96
2241 2317 3.220222 TGCTATGCACCGCTAGCT 58.780 55.556 13.93 0.00 40.78 3.32
2242 2318 2.425562 TGCTATGCACCGCTAGCTA 58.574 52.632 13.93 0.00 40.78 3.32
2243 2319 0.969149 TGCTATGCACCGCTAGCTAT 59.031 50.000 13.93 0.00 40.78 2.97
2244 2320 1.344438 TGCTATGCACCGCTAGCTATT 59.656 47.619 13.93 0.00 40.78 1.73
2245 2321 1.728971 GCTATGCACCGCTAGCTATTG 59.271 52.381 13.93 7.87 37.85 1.90
2246 2322 1.728971 CTATGCACCGCTAGCTATTGC 59.271 52.381 19.64 19.64 40.05 3.56
2247 2323 0.886490 ATGCACCGCTAGCTATTGCC 60.886 55.000 22.11 10.24 40.80 4.52
2248 2324 1.227674 GCACCGCTAGCTATTGCCT 60.228 57.895 13.93 0.00 40.80 4.75
2249 2325 1.224722 GCACCGCTAGCTATTGCCTC 61.225 60.000 13.93 0.00 40.80 4.70
2250 2326 0.104855 CACCGCTAGCTATTGCCTCA 59.895 55.000 13.93 0.00 40.80 3.86
2251 2327 0.830648 ACCGCTAGCTATTGCCTCAA 59.169 50.000 13.93 0.00 40.80 3.02
2252 2328 1.417890 ACCGCTAGCTATTGCCTCAAT 59.582 47.619 13.93 0.00 40.80 2.57
2253 2329 2.158755 ACCGCTAGCTATTGCCTCAATT 60.159 45.455 13.93 0.00 40.80 2.32
2254 2330 2.880890 CCGCTAGCTATTGCCTCAATTT 59.119 45.455 13.93 0.00 40.80 1.82
2255 2331 3.316308 CCGCTAGCTATTGCCTCAATTTT 59.684 43.478 13.93 0.00 40.80 1.82
2256 2332 4.285292 CGCTAGCTATTGCCTCAATTTTG 58.715 43.478 13.93 0.00 40.80 2.44
2257 2333 4.201950 CGCTAGCTATTGCCTCAATTTTGT 60.202 41.667 13.93 0.00 40.80 2.83
2258 2334 5.277047 GCTAGCTATTGCCTCAATTTTGTC 58.723 41.667 7.70 0.00 40.80 3.18
2259 2335 5.067023 GCTAGCTATTGCCTCAATTTTGTCT 59.933 40.000 7.70 0.00 40.80 3.41
2260 2336 5.573337 AGCTATTGCCTCAATTTTGTCTC 57.427 39.130 0.00 0.00 40.80 3.36
2261 2337 5.012239 AGCTATTGCCTCAATTTTGTCTCA 58.988 37.500 0.00 0.00 40.80 3.27
2262 2338 5.477984 AGCTATTGCCTCAATTTTGTCTCAA 59.522 36.000 0.00 0.00 40.80 3.02
2263 2339 6.015180 AGCTATTGCCTCAATTTTGTCTCAAA 60.015 34.615 0.00 0.00 40.80 2.69
2264 2340 6.646240 GCTATTGCCTCAATTTTGTCTCAAAA 59.354 34.615 9.52 9.52 35.54 2.44
2265 2341 7.171337 GCTATTGCCTCAATTTTGTCTCAAAAA 59.829 33.333 10.84 0.00 35.54 1.94
2288 2364 6.847421 AAGAAGAAGCTATTGCCTCAATTT 57.153 33.333 0.65 0.00 40.80 1.82
2296 2372 4.158394 GCTATTGCCTCAATTTGTCCAAGA 59.842 41.667 0.00 0.00 35.54 3.02
2302 2378 4.219288 GCCTCAATTTGTCCAAGACTTCAT 59.781 41.667 0.00 0.00 33.15 2.57
2311 2387 7.587037 TTGTCCAAGACTTCATTTTCTTCAT 57.413 32.000 0.00 0.00 33.15 2.57
2350 2426 4.717233 TGCTAGCATTTTGGGTATTGTG 57.283 40.909 14.93 0.00 0.00 3.33
2353 2429 3.959535 AGCATTTTGGGTATTGTGGTG 57.040 42.857 0.00 0.00 0.00 4.17
2358 2434 5.992217 GCATTTTGGGTATTGTGGTGTTTTA 59.008 36.000 0.00 0.00 0.00 1.52
2364 2440 4.986034 GGGTATTGTGGTGTTTTAAGTTGC 59.014 41.667 0.00 0.00 0.00 4.17
2379 2455 9.605955 GTTTTAAGTTGCACAAAAATCTTGTTT 57.394 25.926 0.00 0.00 0.00 2.83
2381 2457 5.701029 AGTTGCACAAAAATCTTGTTTCG 57.299 34.783 0.00 0.00 0.00 3.46
2387 2463 5.951494 GCACAAAAATCTTGTTTCGACAAAC 59.049 36.000 0.00 0.00 42.16 2.93
2435 2517 6.225981 ACATGTAGTTCAGATATGACTGCA 57.774 37.500 0.00 11.00 37.75 4.41
2572 2655 5.865085 TGTTGCTGGAACTACATTTACTCT 58.135 37.500 13.23 0.00 35.37 3.24
2577 2660 5.938125 GCTGGAACTACATTTACTCTGGAAA 59.062 40.000 0.00 0.00 0.00 3.13
2593 2676 5.200483 TCTGGAAATTGAAGTGGTTGTCTT 58.800 37.500 0.00 0.00 0.00 3.01
2679 2762 4.287067 TGTTCTAGGTTCTGGAAAGATGCT 59.713 41.667 0.00 0.00 33.06 3.79
2711 2794 7.284261 TCAAACTGGAACACATGAATCTGTTTA 59.716 33.333 0.00 0.00 30.59 2.01
2748 2831 5.356751 TGGTACAAATGCGCTGATAAGAATT 59.643 36.000 9.73 0.00 31.92 2.17
2794 2877 4.047627 TCTACAGGACCTGTCAATCTGA 57.952 45.455 30.43 15.93 41.21 3.27
2795 2878 4.416516 TCTACAGGACCTGTCAATCTGAA 58.583 43.478 30.43 9.76 41.21 3.02
2852 2935 8.896744 TCAGTATGTTGAATGGATTCAGATTTC 58.103 33.333 2.46 0.00 40.72 2.17
2855 2938 7.864108 ATGTTGAATGGATTCAGATTTCGTA 57.136 32.000 2.46 0.00 46.34 3.43
2902 3067 5.531287 ACAAAAGAAGTACTCGCCTGATTTT 59.469 36.000 0.00 0.00 0.00 1.82
2984 3162 4.832248 CTGGTAGCAAGGTTTGTCAGATA 58.168 43.478 0.00 0.00 0.00 1.98
2986 3164 5.185454 TGGTAGCAAGGTTTGTCAGATATG 58.815 41.667 0.00 0.00 0.00 1.78
3028 3214 2.156917 TGCAACTCTGGAAAGATGCTG 58.843 47.619 7.50 0.00 43.31 4.41
3081 3267 3.885724 TGCATTTGTCCTGTCGATCTA 57.114 42.857 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.855836 TGTTCACTTGCCTCAAATATGAATC 58.144 36.000 0.00 0.00 34.49 2.52
60 61 5.559770 TCTGTTCACTTGCCTCAAATATGA 58.440 37.500 0.00 0.00 0.00 2.15
76 77 5.105716 TCGTTTTCCCATGTTTTTCTGTTCA 60.106 36.000 0.00 0.00 0.00 3.18
89 91 5.659440 AATTGCTATTGTCGTTTTCCCAT 57.341 34.783 0.00 0.00 0.00 4.00
133 135 3.759527 TCTTTACGTGATCTCCAGTCG 57.240 47.619 0.00 0.00 0.00 4.18
136 138 7.884816 TTACTTTTCTTTACGTGATCTCCAG 57.115 36.000 0.00 0.00 0.00 3.86
176 212 3.418684 TTCCTCCTCTTCTTTTTCGGG 57.581 47.619 0.00 0.00 0.00 5.14
193 230 2.341846 TGTGTCCCAGTTCTGTTTCC 57.658 50.000 0.00 0.00 0.00 3.13
198 235 1.202687 TGCTCTTGTGTCCCAGTTCTG 60.203 52.381 0.00 0.00 0.00 3.02
199 236 1.071385 CTGCTCTTGTGTCCCAGTTCT 59.929 52.381 0.00 0.00 0.00 3.01
200 237 1.070758 TCTGCTCTTGTGTCCCAGTTC 59.929 52.381 0.00 0.00 0.00 3.01
201 238 1.131638 TCTGCTCTTGTGTCCCAGTT 58.868 50.000 0.00 0.00 0.00 3.16
202 239 1.131638 TTCTGCTCTTGTGTCCCAGT 58.868 50.000 0.00 0.00 0.00 4.00
203 240 1.202687 TGTTCTGCTCTTGTGTCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
204 241 0.836606 TGTTCTGCTCTTGTGTCCCA 59.163 50.000 0.00 0.00 0.00 4.37
205 242 1.808945 CATGTTCTGCTCTTGTGTCCC 59.191 52.381 0.00 0.00 0.00 4.46
206 243 2.481952 GTCATGTTCTGCTCTTGTGTCC 59.518 50.000 0.00 0.00 0.00 4.02
207 244 3.133691 TGTCATGTTCTGCTCTTGTGTC 58.866 45.455 0.00 0.00 0.00 3.67
208 245 3.136763 CTGTCATGTTCTGCTCTTGTGT 58.863 45.455 0.00 0.00 0.00 3.72
209 246 2.483106 CCTGTCATGTTCTGCTCTTGTG 59.517 50.000 0.00 0.00 0.00 3.33
210 247 2.105477 ACCTGTCATGTTCTGCTCTTGT 59.895 45.455 0.00 0.00 0.00 3.16
211 248 2.483106 CACCTGTCATGTTCTGCTCTTG 59.517 50.000 0.00 0.00 0.00 3.02
212 249 2.775890 CACCTGTCATGTTCTGCTCTT 58.224 47.619 0.00 0.00 0.00 2.85
213 250 1.610102 GCACCTGTCATGTTCTGCTCT 60.610 52.381 0.00 0.00 0.00 4.09
214 251 0.801251 GCACCTGTCATGTTCTGCTC 59.199 55.000 0.00 0.00 0.00 4.26
215 252 0.109153 TGCACCTGTCATGTTCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
216 253 0.953727 TTGCACCTGTCATGTTCTGC 59.046 50.000 0.00 0.00 0.00 4.26
217 254 2.030540 CCTTTGCACCTGTCATGTTCTG 60.031 50.000 0.00 0.00 0.00 3.02
218 255 2.158623 TCCTTTGCACCTGTCATGTTCT 60.159 45.455 0.00 0.00 0.00 3.01
219 256 2.229792 TCCTTTGCACCTGTCATGTTC 58.770 47.619 0.00 0.00 0.00 3.18
220 257 2.363306 TCCTTTGCACCTGTCATGTT 57.637 45.000 0.00 0.00 0.00 2.71
221 258 2.363306 TTCCTTTGCACCTGTCATGT 57.637 45.000 0.00 0.00 0.00 3.21
222 259 5.389859 TTTATTCCTTTGCACCTGTCATG 57.610 39.130 0.00 0.00 0.00 3.07
223 260 6.267471 TCTTTTTATTCCTTTGCACCTGTCAT 59.733 34.615 0.00 0.00 0.00 3.06
224 261 5.596361 TCTTTTTATTCCTTTGCACCTGTCA 59.404 36.000 0.00 0.00 0.00 3.58
225 262 6.084326 TCTTTTTATTCCTTTGCACCTGTC 57.916 37.500 0.00 0.00 0.00 3.51
226 263 6.267471 TCATCTTTTTATTCCTTTGCACCTGT 59.733 34.615 0.00 0.00 0.00 4.00
227 264 6.690530 TCATCTTTTTATTCCTTTGCACCTG 58.309 36.000 0.00 0.00 0.00 4.00
228 265 6.916360 TCATCTTTTTATTCCTTTGCACCT 57.084 33.333 0.00 0.00 0.00 4.00
229 266 6.089417 CGTTCATCTTTTTATTCCTTTGCACC 59.911 38.462 0.00 0.00 0.00 5.01
230 267 6.640907 ACGTTCATCTTTTTATTCCTTTGCAC 59.359 34.615 0.00 0.00 0.00 4.57
231 268 6.744112 ACGTTCATCTTTTTATTCCTTTGCA 58.256 32.000 0.00 0.00 0.00 4.08
232 269 7.501515 CAACGTTCATCTTTTTATTCCTTTGC 58.498 34.615 0.00 0.00 0.00 3.68
233 270 7.168972 TGCAACGTTCATCTTTTTATTCCTTTG 59.831 33.333 0.00 0.00 0.00 2.77
234 271 7.206687 TGCAACGTTCATCTTTTTATTCCTTT 58.793 30.769 0.00 0.00 0.00 3.11
235 272 6.744112 TGCAACGTTCATCTTTTTATTCCTT 58.256 32.000 0.00 0.00 0.00 3.36
236 273 6.325919 TGCAACGTTCATCTTTTTATTCCT 57.674 33.333 0.00 0.00 0.00 3.36
237 274 5.572896 CCTGCAACGTTCATCTTTTTATTCC 59.427 40.000 0.00 0.00 0.00 3.01
238 275 5.572896 CCCTGCAACGTTCATCTTTTTATTC 59.427 40.000 0.00 0.00 0.00 1.75
239 276 5.242838 TCCCTGCAACGTTCATCTTTTTATT 59.757 36.000 0.00 0.00 0.00 1.40
240 277 4.764823 TCCCTGCAACGTTCATCTTTTTAT 59.235 37.500 0.00 0.00 0.00 1.40
241 278 4.023536 GTCCCTGCAACGTTCATCTTTTTA 60.024 41.667 0.00 0.00 0.00 1.52
242 279 2.955660 TCCCTGCAACGTTCATCTTTTT 59.044 40.909 0.00 0.00 0.00 1.94
243 280 2.293399 GTCCCTGCAACGTTCATCTTTT 59.707 45.455 0.00 0.00 0.00 2.27
244 281 1.880027 GTCCCTGCAACGTTCATCTTT 59.120 47.619 0.00 0.00 0.00 2.52
245 282 1.523758 GTCCCTGCAACGTTCATCTT 58.476 50.000 0.00 0.00 0.00 2.40
246 283 0.321653 GGTCCCTGCAACGTTCATCT 60.322 55.000 0.00 0.00 0.00 2.90
247 284 1.305930 GGGTCCCTGCAACGTTCATC 61.306 60.000 0.00 0.00 0.00 2.92
248 285 1.303317 GGGTCCCTGCAACGTTCAT 60.303 57.895 0.00 0.00 0.00 2.57
249 286 2.112297 GGGTCCCTGCAACGTTCA 59.888 61.111 0.00 0.00 0.00 3.18
250 287 3.047877 CGGGTCCCTGCAACGTTC 61.048 66.667 6.29 0.00 0.00 3.95
251 288 3.868985 ACGGGTCCCTGCAACGTT 61.869 61.111 6.29 0.00 33.54 3.99
252 289 4.619227 CACGGGTCCCTGCAACGT 62.619 66.667 6.29 0.00 38.43 3.99
254 291 2.764637 ATTCCACGGGTCCCTGCAAC 62.765 60.000 6.29 0.00 0.00 4.17
255 292 1.202099 TATTCCACGGGTCCCTGCAA 61.202 55.000 6.29 0.00 0.00 4.08
256 293 1.202099 TTATTCCACGGGTCCCTGCA 61.202 55.000 6.29 0.00 0.00 4.41
257 294 0.182775 ATTATTCCACGGGTCCCTGC 59.817 55.000 6.29 0.00 0.00 4.85
258 295 5.243207 GTTATATTATTCCACGGGTCCCTG 58.757 45.833 6.29 3.41 0.00 4.45
259 296 4.020839 CGTTATATTATTCCACGGGTCCCT 60.021 45.833 6.29 0.00 0.00 4.20
260 297 4.021192 TCGTTATATTATTCCACGGGTCCC 60.021 45.833 0.00 0.00 0.00 4.46
261 298 5.138125 TCGTTATATTATTCCACGGGTCC 57.862 43.478 0.00 0.00 0.00 4.46
262 299 5.166398 CCTCGTTATATTATTCCACGGGTC 58.834 45.833 0.00 0.00 28.94 4.46
263 300 4.020839 CCCTCGTTATATTATTCCACGGGT 60.021 45.833 0.00 0.00 28.94 5.28
264 301 4.221262 TCCCTCGTTATATTATTCCACGGG 59.779 45.833 0.00 0.00 0.00 5.28
265 302 5.395682 TCCCTCGTTATATTATTCCACGG 57.604 43.478 0.00 0.00 0.00 4.94
266 303 6.395629 ACATCCCTCGTTATATTATTCCACG 58.604 40.000 0.00 0.00 0.00 4.94
267 304 7.980099 CCTACATCCCTCGTTATATTATTCCAC 59.020 40.741 0.00 0.00 0.00 4.02
268 305 7.897030 TCCTACATCCCTCGTTATATTATTCCA 59.103 37.037 0.00 0.00 0.00 3.53
269 306 8.302515 TCCTACATCCCTCGTTATATTATTCC 57.697 38.462 0.00 0.00 0.00 3.01
272 309 9.931698 TGTATCCTACATCCCTCGTTATATTAT 57.068 33.333 0.00 0.00 32.89 1.28
273 310 9.182214 GTGTATCCTACATCCCTCGTTATATTA 57.818 37.037 0.00 0.00 41.34 0.98
274 311 7.672660 TGTGTATCCTACATCCCTCGTTATATT 59.327 37.037 0.00 0.00 41.34 1.28
275 312 7.122353 GTGTGTATCCTACATCCCTCGTTATAT 59.878 40.741 0.00 0.00 41.34 0.86
276 313 6.432162 GTGTGTATCCTACATCCCTCGTTATA 59.568 42.308 0.00 0.00 41.34 0.98
277 314 5.243283 GTGTGTATCCTACATCCCTCGTTAT 59.757 44.000 0.00 0.00 41.34 1.89
278 315 4.581824 GTGTGTATCCTACATCCCTCGTTA 59.418 45.833 0.00 0.00 41.34 3.18
279 316 3.383825 GTGTGTATCCTACATCCCTCGTT 59.616 47.826 0.00 0.00 41.34 3.85
280 317 2.957006 GTGTGTATCCTACATCCCTCGT 59.043 50.000 0.00 0.00 41.34 4.18
281 318 2.956333 TGTGTGTATCCTACATCCCTCG 59.044 50.000 0.00 0.00 41.34 4.63
282 319 3.704566 TGTGTGTGTATCCTACATCCCTC 59.295 47.826 0.00 0.00 41.34 4.30
283 320 3.719871 TGTGTGTGTATCCTACATCCCT 58.280 45.455 0.00 0.00 41.34 4.20
284 321 4.689612 ATGTGTGTGTATCCTACATCCC 57.310 45.455 0.00 0.00 41.34 3.85
285 322 5.784177 CCTATGTGTGTGTATCCTACATCC 58.216 45.833 0.00 0.00 41.34 3.51
286 323 5.221441 TGCCTATGTGTGTGTATCCTACATC 60.221 44.000 0.00 0.00 41.34 3.06
287 324 4.653801 TGCCTATGTGTGTGTATCCTACAT 59.346 41.667 0.00 0.00 41.34 2.29
288 325 4.027437 TGCCTATGTGTGTGTATCCTACA 58.973 43.478 0.00 0.00 36.08 2.74
289 326 4.341235 TCTGCCTATGTGTGTGTATCCTAC 59.659 45.833 0.00 0.00 0.00 3.18
290 327 4.341235 GTCTGCCTATGTGTGTGTATCCTA 59.659 45.833 0.00 0.00 0.00 2.94
291 328 3.133003 GTCTGCCTATGTGTGTGTATCCT 59.867 47.826 0.00 0.00 0.00 3.24
292 329 3.458189 GTCTGCCTATGTGTGTGTATCC 58.542 50.000 0.00 0.00 0.00 2.59
293 330 3.116300 CGTCTGCCTATGTGTGTGTATC 58.884 50.000 0.00 0.00 0.00 2.24
294 331 2.496070 ACGTCTGCCTATGTGTGTGTAT 59.504 45.455 0.00 0.00 0.00 2.29
295 332 1.890489 ACGTCTGCCTATGTGTGTGTA 59.110 47.619 0.00 0.00 0.00 2.90
296 333 0.679505 ACGTCTGCCTATGTGTGTGT 59.320 50.000 0.00 0.00 0.00 3.72
297 334 2.647529 TACGTCTGCCTATGTGTGTG 57.352 50.000 0.00 0.00 0.00 3.82
298 335 3.887621 AATACGTCTGCCTATGTGTGT 57.112 42.857 0.00 0.00 0.00 3.72
299 336 5.773575 AGATAATACGTCTGCCTATGTGTG 58.226 41.667 0.00 0.00 0.00 3.82
300 337 7.520451 TTAGATAATACGTCTGCCTATGTGT 57.480 36.000 0.00 0.00 0.00 3.72
301 338 8.812147 TTTTAGATAATACGTCTGCCTATGTG 57.188 34.615 0.00 0.00 0.00 3.21
325 362 6.646267 TGTTATACGTCTGCCTATCCTTTTT 58.354 36.000 0.00 0.00 0.00 1.94
326 363 6.229936 TGTTATACGTCTGCCTATCCTTTT 57.770 37.500 0.00 0.00 0.00 2.27
327 364 5.864418 TGTTATACGTCTGCCTATCCTTT 57.136 39.130 0.00 0.00 0.00 3.11
328 365 5.221461 CCTTGTTATACGTCTGCCTATCCTT 60.221 44.000 0.00 0.00 0.00 3.36
329 366 4.281182 CCTTGTTATACGTCTGCCTATCCT 59.719 45.833 0.00 0.00 0.00 3.24
330 367 4.280174 TCCTTGTTATACGTCTGCCTATCC 59.720 45.833 0.00 0.00 0.00 2.59
331 368 5.449107 TCCTTGTTATACGTCTGCCTATC 57.551 43.478 0.00 0.00 0.00 2.08
332 369 5.538813 TGATCCTTGTTATACGTCTGCCTAT 59.461 40.000 0.00 0.00 0.00 2.57
333 370 4.891168 TGATCCTTGTTATACGTCTGCCTA 59.109 41.667 0.00 0.00 0.00 3.93
334 371 3.704566 TGATCCTTGTTATACGTCTGCCT 59.295 43.478 0.00 0.00 0.00 4.75
335 372 4.054780 TGATCCTTGTTATACGTCTGCC 57.945 45.455 0.00 0.00 0.00 4.85
336 373 4.868171 TGTTGATCCTTGTTATACGTCTGC 59.132 41.667 0.00 0.00 0.00 4.26
337 374 6.330278 TCTGTTGATCCTTGTTATACGTCTG 58.670 40.000 0.00 0.00 0.00 3.51
338 375 6.525578 TCTGTTGATCCTTGTTATACGTCT 57.474 37.500 0.00 0.00 0.00 4.18
339 376 6.757010 ACATCTGTTGATCCTTGTTATACGTC 59.243 38.462 0.00 0.00 0.00 4.34
340 377 6.640518 ACATCTGTTGATCCTTGTTATACGT 58.359 36.000 0.00 0.00 0.00 3.57
341 378 7.539712 AACATCTGTTGATCCTTGTTATACG 57.460 36.000 0.00 0.00 36.80 3.06
342 379 9.774742 GAAAACATCTGTTGATCCTTGTTATAC 57.225 33.333 0.00 0.00 38.44 1.47
343 380 8.664798 CGAAAACATCTGTTGATCCTTGTTATA 58.335 33.333 0.00 0.00 38.44 0.98
344 381 7.174946 ACGAAAACATCTGTTGATCCTTGTTAT 59.825 33.333 0.00 0.00 38.44 1.89
345 382 6.485313 ACGAAAACATCTGTTGATCCTTGTTA 59.515 34.615 0.00 0.00 38.44 2.41
346 383 5.299279 ACGAAAACATCTGTTGATCCTTGTT 59.701 36.000 0.00 0.00 38.44 2.83
347 384 4.821805 ACGAAAACATCTGTTGATCCTTGT 59.178 37.500 0.00 0.00 38.44 3.16
348 385 5.362556 ACGAAAACATCTGTTGATCCTTG 57.637 39.130 0.00 0.00 38.44 3.61
349 386 8.786826 TTATACGAAAACATCTGTTGATCCTT 57.213 30.769 0.00 0.00 38.44 3.36
350 387 8.786826 TTTATACGAAAACATCTGTTGATCCT 57.213 30.769 0.00 0.00 38.44 3.24
365 402 9.884299 CGACATACGTGTTTATTTTATACGAAA 57.116 29.630 0.00 0.00 39.09 3.46
391 428 9.634163 AATTCTTTAATTGTTTGAATACGGGAC 57.366 29.630 0.00 0.00 33.97 4.46
430 467 7.042590 GCACATGTTTGAACAGAAAATGATCAA 60.043 33.333 0.00 0.00 45.72 2.57
431 468 6.421501 GCACATGTTTGAACAGAAAATGATCA 59.578 34.615 0.00 0.00 43.04 2.92
432 469 6.421501 TGCACATGTTTGAACAGAAAATGATC 59.578 34.615 0.00 0.00 43.04 2.92
433 470 6.282167 TGCACATGTTTGAACAGAAAATGAT 58.718 32.000 0.00 0.00 43.04 2.45
434 471 5.658468 TGCACATGTTTGAACAGAAAATGA 58.342 33.333 0.00 0.00 43.04 2.57
435 472 5.970140 TGCACATGTTTGAACAGAAAATG 57.030 34.783 0.00 0.00 43.04 2.32
436 473 6.282167 TCATGCACATGTTTGAACAGAAAAT 58.718 32.000 10.27 0.00 43.04 1.82
437 474 5.658468 TCATGCACATGTTTGAACAGAAAA 58.342 33.333 10.27 0.00 43.04 2.29
438 475 5.259832 TCATGCACATGTTTGAACAGAAA 57.740 34.783 10.27 0.00 43.04 2.52
439 476 4.915158 TCATGCACATGTTTGAACAGAA 57.085 36.364 10.27 0.00 43.04 3.02
440 477 4.915158 TTCATGCACATGTTTGAACAGA 57.085 36.364 10.27 0.00 43.04 3.41
441 478 5.118050 GTGATTCATGCACATGTTTGAACAG 59.882 40.000 14.56 0.00 43.04 3.16
442 479 4.983538 GTGATTCATGCACATGTTTGAACA 59.016 37.500 14.56 12.30 44.06 3.18
443 480 4.088923 CGTGATTCATGCACATGTTTGAAC 59.911 41.667 14.56 10.64 39.72 3.18
444 481 4.228317 CGTGATTCATGCACATGTTTGAA 58.772 39.130 14.60 14.60 39.72 2.69
445 482 3.366171 CCGTGATTCATGCACATGTTTGA 60.366 43.478 10.27 0.00 39.72 2.69
446 483 2.918600 CCGTGATTCATGCACATGTTTG 59.081 45.455 10.27 0.00 39.72 2.93
447 484 2.671914 GCCGTGATTCATGCACATGTTT 60.672 45.455 10.27 0.00 39.72 2.83
448 485 1.135315 GCCGTGATTCATGCACATGTT 60.135 47.619 10.27 0.24 39.72 2.71
449 486 0.452987 GCCGTGATTCATGCACATGT 59.547 50.000 10.27 0.00 39.72 3.21
450 487 0.590481 CGCCGTGATTCATGCACATG 60.590 55.000 4.18 4.18 40.09 3.21
451 488 1.723273 CGCCGTGATTCATGCACAT 59.277 52.632 10.52 0.00 36.06 3.21
452 489 3.037992 GCGCCGTGATTCATGCACA 62.038 57.895 0.00 0.00 36.06 4.57
453 490 2.277501 GCGCCGTGATTCATGCAC 60.278 61.111 0.00 0.00 0.00 4.57
454 491 2.745492 TGCGCCGTGATTCATGCA 60.745 55.556 4.18 0.00 0.00 3.96
455 492 1.779025 ATCTGCGCCGTGATTCATGC 61.779 55.000 4.18 1.18 0.00 4.06
456 493 0.234106 GATCTGCGCCGTGATTCATG 59.766 55.000 4.18 0.00 0.00 3.07
457 494 0.105593 AGATCTGCGCCGTGATTCAT 59.894 50.000 4.18 0.00 0.00 2.57
458 495 0.744281 TAGATCTGCGCCGTGATTCA 59.256 50.000 4.18 0.00 0.00 2.57
459 496 1.132588 GTAGATCTGCGCCGTGATTC 58.867 55.000 4.18 1.45 0.00 2.52
460 497 0.595053 CGTAGATCTGCGCCGTGATT 60.595 55.000 20.21 0.90 0.00 2.57
461 498 1.008424 CGTAGATCTGCGCCGTGAT 60.008 57.895 20.21 6.11 0.00 3.06
462 499 2.407616 CGTAGATCTGCGCCGTGA 59.592 61.111 20.21 0.26 0.00 4.35
463 500 2.655364 CCGTAGATCTGCGCCGTG 60.655 66.667 25.57 9.90 37.37 4.94
464 501 4.570663 GCCGTAGATCTGCGCCGT 62.571 66.667 25.57 0.00 37.37 5.68
465 502 4.271816 AGCCGTAGATCTGCGCCG 62.272 66.667 25.57 15.05 37.37 6.46
466 503 2.659897 CAGCCGTAGATCTGCGCC 60.660 66.667 25.57 16.61 37.37 6.53
467 504 3.333969 GCAGCCGTAGATCTGCGC 61.334 66.667 25.57 20.09 41.89 6.09
470 507 0.529337 CACCTGCAGCCGTAGATCTG 60.529 60.000 8.66 0.00 0.00 2.90
471 508 0.972983 ACACCTGCAGCCGTAGATCT 60.973 55.000 8.66 0.00 0.00 2.75
472 509 0.108138 AACACCTGCAGCCGTAGATC 60.108 55.000 8.66 0.00 0.00 2.75
476 513 1.225376 CGAAAACACCTGCAGCCGTA 61.225 55.000 8.66 0.00 0.00 4.02
488 525 2.616001 GGGGTATGCACCTACGAAAACA 60.616 50.000 0.00 0.00 45.04 2.83
513 551 2.869503 AATTCGTAGGGGCACGCAGG 62.870 60.000 0.00 0.00 46.88 4.85
514 552 1.024579 AAATTCGTAGGGGCACGCAG 61.025 55.000 0.00 0.00 46.88 5.18
515 553 0.606944 AAAATTCGTAGGGGCACGCA 60.607 50.000 0.00 0.00 46.88 5.24
516 554 0.098200 GAAAATTCGTAGGGGCACGC 59.902 55.000 0.00 0.00 41.67 5.34
517 555 0.372334 CGAAAATTCGTAGGGGCACG 59.628 55.000 7.37 0.00 45.09 5.34
565 603 3.750371 TCAACTTCGGGATCAATTGTGT 58.250 40.909 5.13 0.00 0.00 3.72
616 655 5.240623 AGAATCAGTAATGGAGCTAGACGAG 59.759 44.000 0.00 0.00 0.00 4.18
681 720 1.548269 CTCTCTTTCTTGGACGGAGCT 59.452 52.381 0.00 0.00 0.00 4.09
682 721 1.404851 CCTCTCTTTCTTGGACGGAGC 60.405 57.143 0.00 0.00 0.00 4.70
684 723 2.171840 CTCCTCTCTTTCTTGGACGGA 58.828 52.381 0.00 0.00 0.00 4.69
685 724 2.171840 TCTCCTCTCTTTCTTGGACGG 58.828 52.381 0.00 0.00 0.00 4.79
686 725 3.944055 TTCTCCTCTCTTTCTTGGACG 57.056 47.619 0.00 0.00 0.00 4.79
812 857 0.179127 CCGCTGTGATGACGTGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
858 903 0.745845 CCCATGTGCAGTGACCTAGC 60.746 60.000 0.00 0.00 0.00 3.42
1122 1179 4.447342 CAATCCGGCCTTGGCCCT 62.447 66.667 23.46 7.12 0.00 5.19
1329 1392 2.203029 GGAGATTTCCGGTCGGCC 60.203 66.667 0.00 0.00 32.79 6.13
1363 1426 1.152860 TGCGAGGGAAGCCAACAAA 60.153 52.632 0.00 0.00 0.00 2.83
1418 1481 2.047560 GTCCTGCGGGGTGTACAC 60.048 66.667 18.01 18.01 36.25 2.90
1527 1590 1.704641 AGAAAACCACCAAAGGAGCC 58.295 50.000 0.00 0.00 0.00 4.70
1538 1601 2.012937 ACACGACGACAAGAAAACCA 57.987 45.000 0.00 0.00 0.00 3.67
1563 1628 5.184287 CACCGTAAATTAAAACCCCATGAGT 59.816 40.000 0.00 0.00 0.00 3.41
1598 1663 2.179517 GTGCTCACGTCCTCCTCG 59.820 66.667 0.00 0.00 0.00 4.63
1725 1790 4.181010 CATCCTCCACCTGCCCCG 62.181 72.222 0.00 0.00 0.00 5.73
1726 1791 4.512914 GCATCCTCCACCTGCCCC 62.513 72.222 0.00 0.00 0.00 5.80
1727 1792 2.900671 GAAGCATCCTCCACCTGCCC 62.901 65.000 0.00 0.00 36.56 5.36
1728 1793 1.452833 GAAGCATCCTCCACCTGCC 60.453 63.158 0.00 0.00 36.56 4.85
1729 1794 1.452833 GGAAGCATCCTCCACCTGC 60.453 63.158 0.00 0.00 42.93 4.85
1730 1795 1.153289 CGGAAGCATCCTCCACCTG 60.153 63.158 6.39 0.00 44.17 4.00
1731 1796 1.613630 ACGGAAGCATCCTCCACCT 60.614 57.895 6.39 0.00 44.17 4.00
1732 1797 1.450312 CACGGAAGCATCCTCCACC 60.450 63.158 6.39 0.00 44.17 4.61
1733 1798 0.460987 CTCACGGAAGCATCCTCCAC 60.461 60.000 6.39 0.00 44.17 4.02
1734 1799 0.904865 ACTCACGGAAGCATCCTCCA 60.905 55.000 6.39 0.00 44.17 3.86
1735 1800 0.179097 GACTCACGGAAGCATCCTCC 60.179 60.000 6.39 0.00 44.17 4.30
1751 1816 1.079819 CACGCTGGATGAACCGACT 60.080 57.895 0.00 0.00 42.61 4.18
1781 1846 8.370940 GGACATATCAGAATCTGGTTCTTGATA 58.629 37.037 10.71 17.31 44.80 2.15
1867 1935 5.693769 TCCCCTGTTCCTTTGATTAGTAG 57.306 43.478 0.00 0.00 0.00 2.57
1883 1957 3.634397 TGAATTGTAGCTCTTCCCCTG 57.366 47.619 0.00 0.00 0.00 4.45
1971 2045 1.909700 CAGGGAAGGCAAGCAAGTAA 58.090 50.000 0.00 0.00 0.00 2.24
1973 2047 1.905354 GCAGGGAAGGCAAGCAAGT 60.905 57.895 0.00 0.00 0.00 3.16
2025 2099 9.308000 TGAAACAGGAACCAGTTATTCATTTAT 57.692 29.630 2.29 0.00 0.00 1.40
2031 2105 7.433680 ACAATTGAAACAGGAACCAGTTATTC 58.566 34.615 13.59 0.00 0.00 1.75
2032 2106 7.287696 AGACAATTGAAACAGGAACCAGTTATT 59.712 33.333 13.59 0.00 0.00 1.40
2041 2115 7.639113 ACTTACAAGACAATTGAAACAGGAA 57.361 32.000 13.59 0.25 0.00 3.36
2053 2127 7.448161 ACAATCATGGATCAACTTACAAGACAA 59.552 33.333 0.00 0.00 0.00 3.18
2056 2130 6.599244 GGACAATCATGGATCAACTTACAAGA 59.401 38.462 0.00 0.00 0.00 3.02
2060 2134 6.757897 TTGGACAATCATGGATCAACTTAC 57.242 37.500 0.00 0.00 0.00 2.34
2063 2137 4.098960 GCATTGGACAATCATGGATCAACT 59.901 41.667 0.00 0.00 0.00 3.16
2070 2146 5.478233 CAATTTGCATTGGACAATCATGG 57.522 39.130 0.00 0.00 36.82 3.66
2085 2161 0.674581 GCTTCTTGCCCCCAATTTGC 60.675 55.000 0.00 0.00 35.15 3.68
2086 2162 0.686224 TGCTTCTTGCCCCCAATTTG 59.314 50.000 0.00 0.00 42.00 2.32
2132 2208 6.575162 ACACAGAACAGAACAAACTTTCTT 57.425 33.333 0.00 0.00 33.31 2.52
2133 2209 6.575162 AACACAGAACAGAACAAACTTTCT 57.425 33.333 0.00 0.00 36.18 2.52
2138 2214 4.497507 GCCCTAACACAGAACAGAACAAAC 60.498 45.833 0.00 0.00 0.00 2.93
2151 2227 1.351017 CTCTTTCCCAGCCCTAACACA 59.649 52.381 0.00 0.00 0.00 3.72
2172 2248 4.084849 CGTCTCAGACAAACTGTTGATGAC 60.085 45.833 5.45 0.00 45.86 3.06
2188 2264 2.358737 GGGCCCAACACGTCTCAG 60.359 66.667 19.95 0.00 0.00 3.35
2189 2265 2.063015 AATGGGCCCAACACGTCTCA 62.063 55.000 32.58 0.00 0.00 3.27
2190 2266 1.303317 AATGGGCCCAACACGTCTC 60.303 57.895 32.58 0.00 0.00 3.36
2191 2267 1.303317 GAATGGGCCCAACACGTCT 60.303 57.895 32.58 7.43 0.00 4.18
2192 2268 1.303317 AGAATGGGCCCAACACGTC 60.303 57.895 32.58 20.16 0.00 4.34
2193 2269 1.603455 CAGAATGGGCCCAACACGT 60.603 57.895 32.58 9.34 0.00 4.49
2195 2271 0.967380 CCTCAGAATGGGCCCAACAC 60.967 60.000 32.58 22.24 32.77 3.32
2196 2272 1.383799 CCTCAGAATGGGCCCAACA 59.616 57.895 32.58 5.36 32.77 3.33
2197 2273 2.054453 GCCTCAGAATGGGCCCAAC 61.054 63.158 32.58 25.29 43.75 3.77
2198 2274 2.360191 GCCTCAGAATGGGCCCAA 59.640 61.111 32.58 11.46 43.75 4.12
2202 2278 3.728292 CCCAGGCCTCAGAATGGGC 62.728 68.421 12.28 0.00 45.62 5.36
2203 2279 2.599597 CCCAGGCCTCAGAATGGG 59.400 66.667 10.89 10.89 46.14 4.00
2204 2280 0.178998 CATCCCAGGCCTCAGAATGG 60.179 60.000 0.00 0.00 36.16 3.16
2205 2281 0.549950 ACATCCCAGGCCTCAGAATG 59.450 55.000 0.00 7.35 37.54 2.67
2206 2282 0.549950 CACATCCCAGGCCTCAGAAT 59.450 55.000 0.00 0.00 0.00 2.40
2207 2283 1.993653 CACATCCCAGGCCTCAGAA 59.006 57.895 0.00 0.00 0.00 3.02
2208 2284 2.673200 GCACATCCCAGGCCTCAGA 61.673 63.158 0.00 2.10 0.00 3.27
2209 2285 1.340399 TAGCACATCCCAGGCCTCAG 61.340 60.000 0.00 0.00 0.00 3.35
2210 2286 0.695462 ATAGCACATCCCAGGCCTCA 60.695 55.000 0.00 0.00 0.00 3.86
2211 2287 0.250640 CATAGCACATCCCAGGCCTC 60.251 60.000 0.00 0.00 0.00 4.70
2212 2288 1.842007 CATAGCACATCCCAGGCCT 59.158 57.895 0.00 0.00 0.00 5.19
2213 2289 1.900498 GCATAGCACATCCCAGGCC 60.900 63.158 0.00 0.00 0.00 5.19
2214 2290 1.152902 TGCATAGCACATCCCAGGC 60.153 57.895 0.00 0.00 31.71 4.85
2224 2300 0.969149 ATAGCTAGCGGTGCATAGCA 59.031 50.000 17.06 5.94 45.54 3.49
2225 2301 1.728971 CAATAGCTAGCGGTGCATAGC 59.271 52.381 9.55 8.68 43.85 2.97
2226 2302 1.728971 GCAATAGCTAGCGGTGCATAG 59.271 52.381 25.73 8.80 37.91 2.23
2227 2303 1.608025 GGCAATAGCTAGCGGTGCATA 60.608 52.381 29.13 11.01 41.70 3.14
2228 2304 0.886490 GGCAATAGCTAGCGGTGCAT 60.886 55.000 29.13 9.32 41.70 3.96
2229 2305 1.523711 GGCAATAGCTAGCGGTGCA 60.524 57.895 29.13 9.64 41.70 4.57
2230 2306 1.224722 GAGGCAATAGCTAGCGGTGC 61.225 60.000 23.83 23.83 41.70 5.01
2231 2307 0.104855 TGAGGCAATAGCTAGCGGTG 59.895 55.000 9.55 9.84 41.70 4.94
2232 2308 0.830648 TTGAGGCAATAGCTAGCGGT 59.169 50.000 9.55 0.00 41.70 5.68
2233 2309 2.175878 ATTGAGGCAATAGCTAGCGG 57.824 50.000 9.55 1.66 41.70 5.52
2234 2310 4.201950 ACAAAATTGAGGCAATAGCTAGCG 60.202 41.667 9.55 0.00 41.70 4.26
2235 2311 5.067023 AGACAAAATTGAGGCAATAGCTAGC 59.933 40.000 6.62 6.62 41.70 3.42
2236 2312 6.317140 TGAGACAAAATTGAGGCAATAGCTAG 59.683 38.462 0.00 0.00 41.70 3.42
2237 2313 6.179756 TGAGACAAAATTGAGGCAATAGCTA 58.820 36.000 0.00 0.00 41.70 3.32
2238 2314 5.012239 TGAGACAAAATTGAGGCAATAGCT 58.988 37.500 0.00 0.00 41.70 3.32
2239 2315 5.314923 TGAGACAAAATTGAGGCAATAGC 57.685 39.130 0.00 0.00 32.43 2.97
2240 2316 8.592105 TTTTTGAGACAAAATTGAGGCAATAG 57.408 30.769 9.82 0.00 32.43 1.73
2262 2338 6.655078 TTGAGGCAATAGCTTCTTCTTTTT 57.345 33.333 0.00 0.00 46.17 1.94
2263 2339 6.847421 ATTGAGGCAATAGCTTCTTCTTTT 57.153 33.333 0.00 0.00 46.17 2.27
2264 2340 6.847421 AATTGAGGCAATAGCTTCTTCTTT 57.153 33.333 0.00 0.00 46.17 2.52
2265 2341 6.210185 ACAAATTGAGGCAATAGCTTCTTCTT 59.790 34.615 0.00 0.00 46.17 2.52
2266 2342 5.713861 ACAAATTGAGGCAATAGCTTCTTCT 59.286 36.000 0.00 0.00 46.17 2.85
2267 2343 5.958955 ACAAATTGAGGCAATAGCTTCTTC 58.041 37.500 0.00 0.00 46.17 2.87
2268 2344 5.105595 GGACAAATTGAGGCAATAGCTTCTT 60.106 40.000 0.00 0.00 46.17 2.52
2269 2345 4.400567 GGACAAATTGAGGCAATAGCTTCT 59.599 41.667 0.00 0.00 46.17 2.85
2270 2346 4.158394 TGGACAAATTGAGGCAATAGCTTC 59.842 41.667 0.00 0.00 46.19 3.86
2271 2347 4.088634 TGGACAAATTGAGGCAATAGCTT 58.911 39.130 0.00 0.00 41.70 3.74
2288 2364 8.868522 ATATGAAGAAAATGAAGTCTTGGACA 57.131 30.769 0.00 0.00 34.23 4.02
2319 2395 5.127682 CCCAAAATGCTAGCAAATCTAGGTT 59.872 40.000 23.54 5.75 43.95 3.50
2320 2396 4.646492 CCCAAAATGCTAGCAAATCTAGGT 59.354 41.667 23.54 0.00 43.95 3.08
2339 2415 6.574350 CAACTTAAAACACCACAATACCCAA 58.426 36.000 0.00 0.00 0.00 4.12
2350 2426 7.302350 AGATTTTTGTGCAACTTAAAACACC 57.698 32.000 0.00 0.00 35.22 4.16
2353 2429 9.605955 AAACAAGATTTTTGTGCAACTTAAAAC 57.394 25.926 0.00 0.00 35.22 2.43
2358 2434 5.866633 TCGAAACAAGATTTTTGTGCAACTT 59.133 32.000 0.00 0.00 38.04 2.66
2364 2440 7.276953 AGTTTGTCGAAACAAGATTTTTGTG 57.723 32.000 3.01 0.00 45.72 3.33
2428 2510 2.979814 AGTACACAACAGTGCAGTCA 57.020 45.000 0.00 0.00 36.74 3.41
2435 2517 6.870965 TGCAAAATTTTGAAGTACACAACAGT 59.129 30.769 30.40 0.00 40.55 3.55
2572 2655 4.441356 GCAAGACAACCACTTCAATTTCCA 60.441 41.667 0.00 0.00 0.00 3.53
2577 2660 2.624838 CCAGCAAGACAACCACTTCAAT 59.375 45.455 0.00 0.00 0.00 2.57
2593 2676 3.585289 TCTGATAAACCTTGGTACCAGCA 59.415 43.478 15.65 0.00 0.00 4.41
2649 2732 6.591750 TTCCAGAACCTAGAACAGAGTTAG 57.408 41.667 0.00 0.00 0.00 2.34
2679 2762 5.875224 TCATGTGTTCCAGTTTGATCCTTA 58.125 37.500 0.00 0.00 0.00 2.69
2711 2794 0.548989 TGTACCAACCCTTGCAGTGT 59.451 50.000 0.00 0.00 0.00 3.55
2794 2877 3.766051 GGGAATGCACTTCAGAGGAATTT 59.234 43.478 0.00 0.00 35.41 1.82
2795 2878 3.011032 AGGGAATGCACTTCAGAGGAATT 59.989 43.478 0.00 0.00 35.41 2.17
2852 2935 7.425577 TGCCATATCTGAATCATTTTCTACG 57.574 36.000 0.00 0.00 0.00 3.51
2855 2938 8.070034 TGTTTGCCATATCTGAATCATTTTCT 57.930 30.769 0.00 0.00 0.00 2.52
2871 2954 4.556699 GCGAGTACTTCTTTTGTTTGCCAT 60.557 41.667 0.00 0.00 0.00 4.40
2902 3067 6.413892 TCCAGCAACATAAATGTATCTCACA 58.586 36.000 0.00 0.00 40.80 3.58
2984 3162 0.617413 ACTTCTGCAGGCTGTAGCAT 59.383 50.000 25.50 11.66 44.36 3.79
2986 3164 2.611225 ATACTTCTGCAGGCTGTAGC 57.389 50.000 25.50 8.06 41.14 3.58
3028 3214 6.801539 TTCATGTGTTACAGTTTGATCCTC 57.198 37.500 0.00 0.00 0.00 3.71
3081 3267 3.321111 GGCATGCATTTCAGAGGAATGAT 59.679 43.478 21.36 0.00 31.93 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.