>input_sequence_59918
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-----------GACCTCGCCGCCGCAGCGCGTCTGGACG----GAAGGAGGATCGGAACGGAACAGAACAGCAAAGCCTC
TCTCC-AGTTTACTTTGGGTTCGTTCCTCCGGCGGCCGCCTGCAAGGAGCCCGGCGCCAGGGCCAAGGCCGGATTGGATG
GCTCATGCCGCCGACGCGAGGTCGCGCTGCGTCGTCGCGCTGCTCTTCGCCGTCGCCGTCTTCCTCGCCTGCTTGCCGCC
CGCCGCCACCGCC------TCCTCGTCTTCCCGGTCAGGTGCGTCGTCTCGTCCGCCATGCGTTCGTTGCTCTCTGCAAC
CCCCGCCGCAAGGCCACCTCCTTGGTCCTCGGGCCGACCGGAAATCTCCTCCGCTCTTTGACGCCTTTGTTGGCTTCCCT
CGCAGCGGCGGCGGCATTGCAACGAGTCGAGATGGCGGCCGTGTACACCCCGCAGGACCTGCAGGAGAAGCCGGATGTGA
CCAAGGTACGTACGCGATGAACGACGGCGACCGCGCCGCCATGCCGCGGCTTCGGGACGAAGGAAAGGCGGCTCCTTTGG
TGGT--TTTCTTGTCGTCGTGTTTCGAACTCATGGGGTTTTAATTTACGGTGCGCAGGACGCCGAGGAGGACGTGAGCAC
GACGGGGTTCGGCGCGGAGGAGGAGAGGGAGGTGCCCACCGGGCCGGACCCCATCCACCACCACGGCAGGGGACCCAGGC
GCCGGCAGTCGCCCTGATCTCGCGCGCGGCGGGGCAGGTGGAGGATGCTTCCGTGAGTCGGTTCATCCAGCGTGAGTGAG
CCATGTATCAAGAACCAGATTCTGATA---TGTCCTATGCATGGGTGCTCTGTTGAATCTGCACATTGGATTCTGATTCC
ATTGTTGTTGTAGGCT------ACTAATCAAAGGAACAGGGGAAGAGCTACAATTCATAATAAGGGTTGTACAATGAGCT
GTTCTTCCCCTAAACAAACTTATTTCTTATTCTTAGTTTTGTTATTACTTGCTTGCCTTCCCTGCGATTCTGCTTTTTTG
TGTGGCGTTGATTTATTTATAAATGAATAACTGGTTCCTGTTTCAATTGTCTTGTAA--GTTGATCCATGATTGTCCAAT
GCAAATTGGGGGCAAGAAGCAATAACTCCTTTTTTATTCCAAC-------------------------------------
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>chr2D_1_TraesCS2D01G333400
GTGTTTTCATAGATGAATATTTGACAATACAAGAATGCAAGTACTGAAGAATAGAAAGATTCATATTTGAGGCAAGTGAA
CAGA-AAAACATGGGAAAACGACAATAGCAATTTTGCATGGAAAGAACGATGCACGAC----------------------
------------TGGAGATCACGTAAAGAAAAGTAATTGGACAGAAGAAAACCCGAAAAAGAAGAGG-AGGAAACAGAAC
TGGGACACAAGAGCAGAACATGACAGGTGCAAAGGAATAAAAAGATGAACGTTGCAGGGACCCGTGGAATAATATAACGA
GGGATGTAGGATACACACACATAGGCAGACGTATTATCTAAAAAAAGGATAGGCAGACGTATAACAAGGATCAACAGATG
TTTTCGTATAAAATAAACACGTATGTCGTCCCGTATTCAAACAATTAAAGAATTTCAATCCATTTTTTGATCATTTTCTG
TTCAAACATGTGCATGAATCACGGCGCAGATCTACGGCTGCAGGTGTTTTCGTAGGTGCATA-CCCCGCACCTGCGTGCC
CCTACGAATTTTCGATCACAAAAGGCACACAAACTAAGATTGACACAATTGAT-CCCGAAGTTGATGACATTTAAGCCAA
AATCTGCAGCGATTCTCGTCTAGCTCCATTACTGATTCTGAAATTTGAATTTTAAACTCACTTTCACATCCTTGCTACTA
GCTCCGTCCAAGAAAGAGAGGAGAAAAGCGCGGCGAGCAAGGCAAAGCTAGCTGTGA------CCTCCAACGGGCCTGGG
CTGACGATCACCTCACCTGCTCAGCAACACGCAGTCGTCGTCCCATCACCAGCTGTATCTCACGTCATCACAGCGGAATC
CCCGGGCGCACCCTAGCACCCAGCTAGGTCACTGCACATGGGACCCACCCAGCCCCCCGTAACGGCGAAGCGGAGCCTCT
CCTGCCG-------CTCGGCCCAATCAGAGCGGCCGGATGCCCGCCACGTGTCCCGCGGCACGTGAGACCCCGTACGGGG
GAAGCGCAAAAGACCTCGCCGCCGCAGCGCGTCTGGACG----GAAGGAGGATCGGAACGGAACAGAACAGCAAAGCCTC
TCTCC-AGTTTACTTTGGGTTCGTTCCTCCGGCGGCCGCCTGCAAGGAGCCCGGCGCCAGGGCCAAGGCCGGATTGGATG
GCTCATGCCGCCGACGCGAGGTCGCGCTGCGTCGTCGCGCTGCTCTTCGCCGTCGCCGTCTTCCTCGCCTGCTTGCCGCC
CGCCGCCACCGCC------TCCTCGTCTTCCCGGTCAGGTGCGTCGTCTCGTCCGCCATGCGTTCGTTGCTCTCTGCAAC
CCCCGCCGCAAGGCCACCTCCTTGGTCCTCGGGCCGACCGGAAATCTCCTCCGCTCTTTGACGCCTTTGTTGGCTTCCCT
CGCAGCGGCGGCGGCATTGCAACGAGTCGAGATGGCGGCCGTGTACACCCCGCAGGACCTGCAGGAGAAGCCGGATGTGA
CCAAGGTACGTACGCGATGAACGACGGCGACCGCGCCGCCATGCCGCGGCTTCGGGACGAAGGAAAGGCGGCTCCTTTGG
TGGT--TTTCTTGTCGTCGTGTTTCGAACTCATGGGGTTTTAATTTACGGTGCGCAGGACGCCGAGGAGGACGTGAGCAC
GACGGGGTTCGGCGCGGAGGAGGAGAGGGAGGTGCCCACCGGGCCGGACCCCATCCACCACCACGGCAGGGGACCCAGGC
GCCGGCAGTCGCCCTGATCTCGCGCGCGGCGGGGCAGGTGGAGGATGCTTCCGTGAGTCGGTTCATCCAGCGTGAGTGAG
CCATGTATCAAGAACCAGATTCTGATA---TGTCCTATGCATGGGTGCTCTGTTGAATCTGCACATTGGATTCTGATTCC
ATTGTTGTTGTAGGCT------ACTAATCAAAGGAACAGGGGAAGAGCTACAATTCATAATAAGGGTTGTACAATGAGCT
GTTCTTCCCCTAAACAAACTTATTTCTTATTCTTAGTTTTGTTATTACTTGCTTGCCTTCCCTGCGATTCTGCTTTTTTG
TGTGGCGTTGATTTATTTATAAATGAATAACTGGTTCCTGTTTCAATTGTCTTGTAA--GTTGATCCATGATTGTCCAAT
GCAAATTGGGGGCAAGAAGCAATAACTCCTTTTTTATTCCAACAAAAAAGAAAGTTTGTTCTGTTCTGTGTTAGGGCTGG
GAAAGAGGTCATCAACAGTTTGTCTGAGACGTGTTGGGCCCATTCTGAGGCCTGGGATGTGCTATGCACCGCTAGCTATT
GCCTCAATTTTGTCTCAAAAAAGAAGAAGCTATTGCCTCAATTTGTCCAAGACTTCATTTTCTTCATATTATTTAACCTA
GATTTGCTAGCATTTTGGGTATTGTGGTGTTTTAAGTTGCACAAAAATCTTGTTTCGACAAACTTATAAGTTCTTGTTCA
ATCTTGAACATG------TAGTTCAGATATGACTGCACTGTTGTGTACTTCAAAATTTTGCATGGGCACAGGGGCAGCTT
TGCCTAATT-AAAAATTGTACTGTAGATGAATATGAAAGAGTTTTGCACCATGAATTGGAATACGTTTTGATGTTGCTGG
AACTACATTTACTCTGGAAATTGAAGTGGTTGTCTTGCTGGTACCAAGGTTTATCAGATTTCCTACACCCTGCAGAAGTC
AGAAGTATTCTCTAACTCTGTTCTAGGTTCTGGAAAGATGCTAAGGATCAAACTGGAACACATGAATCTGTTTACACTGC
AAGGGTTGGTACAAATGCGCTGATAAGAATTGCCTTTTGTTCCATTAGCATCTCATCTACAGGACCTGTCAATCTGAAAT
TCCTCTGAAGTGCATTCCCTCTAGTATTTCAGTATGTTGAATGGATTCAGATTTCGTAGAAAATGATTCAGATATGGCAA
ACAAAAGAAGTACTC-----------------------------------------------------------------
-----------------GCCTGATTTTGTGAGATACATTTATGTTGCTGGAACTATA---TTTACTCTGTACTTTCAAG-
---------TGGTTGTCTGCTGGTAGCAAGGTTTGTCAGATATGCTACAGCCTGCAGAAGTATTCTGCAAC--------T
CTGGAAAGATGCTGAGGATCAAACTGTAACACATGAATCTGATTAATGCATTTGTCCTGTCGATCTATCATTCCTCTGAA
ATGCATGCCCTCCAGTATTTCAGTCTGCTGAAT
>chr2A_1
GTGTTTTCATAGATGAATATTTGACAATACAAGAATGCAGGTATTGAAGAATAGAAATGTGAATATTTGAGGCTAGAGAA
CAGAAAAAACTTGGGAAAACGACAGTAGCAATTTTGCACGGAAAGAACAATGCATGAAACAGAGAACAGATAGGACAGCA
CGAATGGATGAGTGGAAATCACGTAAAGAAAAGTAATTGGACAGAAGAAAAACCGAAAAAGAAGAGG-AAGAAAA-----
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-----------------------------ATCGACGGCCGCAGGCGTTTTCGTAGATGCGTG-CCC--------------
--TACGAATTTTCGATCACAAAAGGCACACAAACTAAGATTGCCACATTTGATCCCCGAAGTTGATGACATTTAAGCCGA
AATCTGCAGCGATTTTCGTCTAGCTCCATTACTGATTCCGAAATTTGAATTTTAAACTCACTTTCACCTCC---------
-----GTCCAAGAAAGAGAGGAGGAAAGCGCGGCGAGCAAGGCAAAGCTAGCTGTGAGT-AATCCTCCAACGGGCCTGGG
CTGACGATCACCTCACCTGCTCAGCAACACGCAGTCGTCGTCCCATCACCAGCTGTGCCTCACGTCATCACAGCGGAATC
CCCGGGCGCACCCCAGCACCCATCTAGGTCACTGCGCACGGGACCCACCCAGCCCCCCGTAACGGCGAAGCGGAGCCTCT
CCTGCCG-------CCCGGCCCAATCAGAGCGGCCGGACGCCCGCCACATGTCCCGCGGCACGTGAGACCCCGTACGGGG
GAAGCGCAAAAGACCTCGCCCCTGCGGCGCGTCTGGACGGACGGAAGGAGGATCGGAACGGAACAGAACAGCAAAGCCTC
TCTCCCAGTTTACTTCGGGTTCGTTCCTCCGGCGGCCGCCTGCACGGAGCCCGGCGCCGGGGCCAAGGCCGGATTGGATG
GCTCATGCCGCCCACGCGAGGTCGCGCTGCGTCGTCGCGCTGCTCTTCGCCGTCGCCGTCTTCCTCGCCTGCTTGCCGCC
CGCCGCCACCGCCTCCGCCTCCTCGTCTTCCCGGGCAGGTACGTCGTCTCGTCCGCCATGCGTTCGTTGCTCTCTAGAAC
CCCCGCCGCAAGGCCACCTTCCTGCTCCTCGCGCCGCCCGGAAATCTCCTGCGCTCTTTGACGCCCTTGTTGGCTTCCCT
CGCAGCGGCGGCGGCATTGCAACGAGTCGAGATGGCGGCCATGTACACCCCGCAGGACCTGCAGGAGAAGCCGGATGTGA
CCAAGGTACGTACGCGACCACGAACGGCGCCCGCGCCGCCATGCCACGGCTTCGGGACTAAGGAAAGGCCGCTCCTTTGG
AGGTGGTTTCTTGTCGTCGTGTTTCGAGCTCATGGGGTTTTCATTTTCGGCGCACAGGACGCGGAGGAGGACGTGAGCAC
GACGGGGTTCGGCGCGGAGGAGGAGAGGGAGGTGCCCACCGGGCCGGACCCCATCCACCACCACGGCAGGGGACCCAGGC
GCCGGCAGTCGCCCTGATCGGCAGACGAC-----------GAGGATGCTTCCGTGGGTCGGTTCGTCCAGCGTGAGTGAG
CCATGAATCAAGAACCAGATTCTGATACTATGTCCTATGCATGGGTGCTCTGTTGAATCTGCACATTGGATTCTGATTCC
ATTGTTGTTGTAGGGT------ACTAATCAAAGGAAATGGGGAAGAGCTACAATTCATAATAAGCGTTGTACAATGAGCT
GTTCTTCCCCTAAACAAACTTATTTGTTATTCTTAGTT-TGTTACTGCTTGCTTGCCTCCCCTGTGATTTTGCTTTTTTG
TGTGGCGTTG----ATGTTTAAATAGATAACTGGCTCCTGTTTCAAGTGCCTTCTATACGTTGATGCATGATTGTCCAAT
TGAAATTGGGGCCAAGAAGCAATAACTCCTTTTTCGTTCCAACAAAATGGAAATTTTGTTCTGTTCAGTGTTAGGGCTGG
GAAAGAGTTCATCAACAGTTTGTACTGTGCACAGCT--------------------------------------------
---------------------------AGCTATTGCCTCAATTCGTCCAAGGCTTCAATTTCTTCACATTATTTTGCCTA
GATTTGCTAGCATTGTGGGTATTGTAGTCTTTTGAGTTGAACAAAAATCTTGTTGCAACAAATTTATATGTTCATGTTCA
ATGTTTAACATGTAGTACTAGTTCAGTTACGACTACGCCGTTGTGTACTTCAATTGTTTGCATGGCCACAAGGGCAGCTT
TGCCTA----------TGTACTCTAGATGAATATGAAAGAGTTGTGCATCATAAATTGGATTACGTTTTGATGTTGCTGG
AACTACATTTACTCGGGAGTTTGAAGTGGTTGTCT-GCTGGTACCAAGGTTTATCAGATTTCCTACACCCTGCAGAAGTC
AGAAGTACTCTGTAACTCTGTTTTAGGTTCTGGAAAGATGCCAAGGATCAAACTGGAACACATGTATCTGTTTGCACTGC
AAGGGTTGGTACAAATGCGCTGATACAAATCGCCTTTTGTTCCATTAGCATCTCATCTACTGGACCTGTCAATCTGTCAT
TCCTCTGAAGTGCATTCCCTCTAGTATTTCAGTATGTTTAATGGATTCAGATTTTGTGGAAAATGATTCAGATGTGTCAA
ACAAAAGAAGTACTT-----------------------------------------------------------------
-----------------GCCTGATTTAGTGAGATACATTTATGTTGCTGGAACTATATTATTTACTCTGTACTTTCAAG-
---------TGGTCGTCTGCTGGTAGCAAGGTTTGTCAGATTTCCTACAGCCTGCAGAAGTATTCTGCAAC--------T
CTGGAAAGATGCTAAGGATCAAACTGGAACACATGAATCTGATTAATGCATTTGTCCTGTCGATCTGTCATTCCTCTGAA
ATGCATGCCCTCCAGCATTTCAGTCTGGTGAAT
>chr2B_1
GTGTTTTCACAGATGAATATTTGACAATACAAGAATGCAAGTATTGAAGAATAGAAACATGCGTATTTGAGGCAAGAGAA
CAGA-AAAACTTGGGAAAACGACGGAAGCAATTTTGCATGAAAAGAACGATGCATGAAACAGAGAACAGATAGAACAACA
CGAATGGATGAGT-GAGATCGCGTAAAGAAAAGTAATTGGACAGAAGAAAAAACAAAAAAGAAAGAGAAAGAAAA-----
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-----------------------------ACTGACGGCTGCAAGCGTTTTCATAGATGCGTACCCC--------------
--TACGAATTTCCGATCACAAAAGGCACACAAACTAAGATTGCCAGAATTGATCCCCGAAGTTGATGACATTTAAGCCAA
AATCTGCAGCGATTTTCGTCTAGCTCCATTACTGATTCTGAAATTTGAATTTCAAACTCACTTTCACATCCTTGCTACTG
TCC----------AAGAGAGGAGAAAAGCGCGGCGAGCAAGGCAAAGCTAGCTGTGAGTAAATCCTCCAACGGGCCTGGC
CTGCCGATCACCTCACCTGCTCAGCAACACGCAGTCGTCGTCCCATCACCAGCTGTCTCTCACGTCATCACAGCGGAATC
CCCGGGCGCACCCTAGCACCCATCTAGGTCACTGCACATGGGACACACCCAGCCCCCCGTAACGGCAAAGCGGAGCCTCT
CCTGGCTCCTGCCACTCGGCCCAATCAGAGCGGCCGGATGCCCGCCACGTGTCCCGCGGCACGTGAGACCCCGTACGGGG
GAAGCGCAAAAGACCTCGTCGCTGCGGCGCGTCTGGACGGG----AGGAGGATCGGAACGGAACAGAACAGCAAAGCCTC
TCTCC-AGTTTACTTTGGGTTCGTCCCTCCGGCGGCTGCCTGCAAGGAGCCCGGCTCTGGGGCCAAGGCCGGATTGGATG
GCTCATGCCGCCGACGCGAGGTCGCGCTGCGTCGTCGCGGTGCTCTTCGCCGTGGCCGTTTTCCTCGCCTGCTTGCCGCC
CGCCGCCACCGCCT------CCTCATCTTCCCGGTCAGGTACGTCGTGTCGTTCGCCATCCATTCGTTGCTCTCTACAAC
CCCCGCCGCAAGGTCACCTCCTTGGTCCTCGCGCCGACCGGAAATCTCCTCCGCTCTTTGACGCCCTTGTTGGTCTCCCT
CGCAGCGGCGGCGGCATTGCAACGAGTCGAGATGGCGGCCATGTACACCCCGCAGGACCTGCAGGAGAAGCCGGATGTGA
CCAAGGTACGTACGCGGTGACGAACGGCGCTCGCGCCGCCATGTTACGGCTTCGGGACGAAGGAAAGGCCGCTCCTTTGG
AGGTGGTTTCTTGTCGTCGTGTTTCGGGCTCATGGGGTTTTAATTTACCGTGCGCAGGACGCGGAGGAGGACGTGAGCAC
GACGGGGTTCGGCGCGGAGGAGGAGAGGGAGGTGCCCACCGGGCCCGACCCCATCCACCACCACGGCAGGGAACCCAGGC
GCCGGCAGTCGCCCTGATCGGCAGAGGAT-----------GAGGATGCTTCCGTGGGTCCGTTCATCCAGCGTGAGTGAG
CCATGAATCAAGAACCAGATTCTGATA---TGTCCTATGCATGGGTGCTCTGCTGAATCTGCACATTGGATTCTGATTCC
ATTGTTGTTGTAGGGTTGTACTACTAATCAAAGGAAAAGGGGAAGAGCTACAATTCATAATAAGGGTTGTACAATGAGCT
GTTCTTCCCCTAAACAAACTTATATGCTATTCTTAGTTTTGTTACTGCTTGCTTGCCCTCCGTTCCAAAATAAATGACCC
AACTTTGTACTAAAGTCATCTATTTTGGAACGGAGAGA------------------------------------------
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-----------G------TAGTTCAGATACGACTGCGCTGTTGTGTACTTCAAAATTTTGCATGGGCACAGGGGCAGCTT
TGCCTAATTAAAAAATTGTACTGTAGATGAATATGAAAGAGATTTGCACCATGAATTGGAATACGTTTTGAGGTTGCTGG
AACTACATTTACTCGGGAATTTGAAGTGGTTGTCT-GCTGGTAGCAAGGTTTATCAGATTTCCTACGCCCTGCAGAAGTC
AGAAGTATTCTGTAACTCTGTTCTAGGTTCTGGAAAGATG-CAAGGATCAAACTGGAACACATGAATCTGTTTGCGCTGC
ATGGGTTGGTACAAATGCGCTGATATGAATCGCCTTTTGTTCCATTAGCATCTCATCTACAGGACCTGTCAATCTGTCAT
TCCTCTGAAGTGCATTCCCTCTAGTATTTCAGTATGTTGAATGGATTCAGATTTTGTGGAAAATGATT--------GCAA
ACAAAAGAAGTACTCCCTCTGTAAACTAATACGTATAAGATCTTTTAGAGCATTAGTGATCTAAAAGAACTTATGTTAGT
TTACAGATGGAGTACTTGCCCGATTTGGTGAGATACATTTATGTCGCTGGAACTATATTTACTCTATAGCCTATACTCCA
CTTTCAAGTTGGTTGTCTGCCGGTTGCAAGGTTTGTCAGATTTCCTACAGCCTGCAGAAGTGTTCTGTAACTCTAGGTTT
CTGGAAAGATGCTAAGGATCAAACTGGAACACATGAATCTGATTAATGCATTTGTCCTGTCGATCTGTCGTTCCTCTGAA
ATGCATGCCCTCCAGTATTTCAGTCTGCTGAAT
>SNPs
-------------------------------------------S-------------S--S---------------S---
----------S-------------S-----------------------------S--S----------------------
---------------------------------------------------S-----------------S----SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----------S----------S---S------SSSSSSSSSSSSSS
SS----------------------------------------S-------------------------------------
--------------S----------------------------------------------------------------S
S-SSS---------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
----------------------S---------------------------------------------------------
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----------------------S--S------------------------------------------------------
----------------------------------------------------------S---------------------
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----------------------------------------S----------------------------------S----
-------------------------------S---------------------------------S--------------
----------------------------------------S---------------------------------------
--------------------SSS------S---------------S-----------------------S----------
S--------------------------S----------------------------------S-----------------
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-------------------SSSS-S-SSSSSSSSSSSSSS---------------S------------------------
-----S--------------------------------------------------------------------------
--------------S---------------------S-------------------------------------------
-------------------------S------------------S-S----------------------S----------
----------SSSS--S-S-----SS--------S-----------S--S---S--S--------S--------------
SS---------S----------------------SS-----------SS----S------------S-------------
-------S---------------SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-------S-----S--------S-------SS----
--------------S----------S--S----S-----S--------------S-S-----S-----S----S------
--S--S-----------------------S------S-------------------------------------------
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--------------S----S---------------S--------------------------------------------
-----------S-----------------------------S-------------------------------S------
-------------------------S----S---------------------------------------------SS--
------------------------------------------------------S--S---------------S------
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--------------------------S-----------------------------------------------------
-----------------------------------------S-S------------------------------------
-------------S------------S---------------------------------------S-------------
---------------------------------
>forward_513
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-------------ATGAATCACGGCGCAGATCT-----------------------------------------------
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>reverse_2307
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------------------------------------------------------------------CACCGCTAGCTATT
GCCTCA--------------------------------------------------------------------------
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