Multiple sequence alignment - TraesCS2D01G329800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G329800 chr2D 100.000 3058 0 0 1 3058 422827990 422824933 0.000000e+00 5648.0
1 TraesCS2D01G329800 chr2D 84.244 622 87 9 2111 2724 563759100 563759718 2.030000e-166 595.0
2 TraesCS2D01G329800 chr2D 83.625 629 93 10 2116 2739 619938241 619938864 1.580000e-162 582.0
3 TraesCS2D01G329800 chr2D 95.000 40 2 0 2822 2861 615121839 615121800 2.550000e-06 63.9
4 TraesCS2D01G329800 chr2B 89.420 1947 133 30 87 1986 495494755 495492835 0.000000e+00 2386.0
5 TraesCS2D01G329800 chr2B 95.385 130 5 1 1980 2108 495492429 495492300 4.000000e-49 206.0
6 TraesCS2D01G329800 chr2B 92.135 89 7 0 2970 3058 752861416 752861504 3.200000e-25 126.0
7 TraesCS2D01G329800 chr2A 91.006 1779 121 19 1006 2760 566083368 566085131 0.000000e+00 2362.0
8 TraesCS2D01G329800 chr2A 90.968 919 46 16 87 1003 566082451 566083334 0.000000e+00 1203.0
9 TraesCS2D01G329800 chr2A 93.066 274 16 2 2787 3058 566085130 566085402 6.140000e-107 398.0
10 TraesCS2D01G329800 chr2A 93.258 89 6 0 2970 3058 747253925 747254013 6.880000e-27 132.0
11 TraesCS2D01G329800 chr2A 92.500 40 3 0 2822 2861 517925304 517925265 1.180000e-04 58.4
12 TraesCS2D01G329800 chr7A 84.689 627 88 4 2128 2750 700634058 700634680 1.200000e-173 619.0
13 TraesCS2D01G329800 chr7A 84.211 627 91 4 2128 2750 700610819 700611441 1.210000e-168 603.0
14 TraesCS2D01G329800 chr5B 84.395 628 91 7 2116 2738 311547259 311547884 7.250000e-171 610.0
15 TraesCS2D01G329800 chr5B 94.318 88 4 1 2972 3058 666833665 666833752 1.910000e-27 134.0
16 TraesCS2D01G329800 chr5B 93.258 89 4 2 2972 3058 666808563 666808651 2.470000e-26 130.0
17 TraesCS2D01G329800 chr5B 90.566 53 4 1 2822 2873 658585926 658585978 5.470000e-08 69.4
18 TraesCS2D01G329800 chr5B 89.796 49 4 1 2834 2881 411784360 411784408 9.160000e-06 62.1
19 TraesCS2D01G329800 chr6D 83.906 640 97 5 2116 2749 29378918 29379557 9.380000e-170 606.0
20 TraesCS2D01G329800 chr6D 84.244 622 92 6 2111 2727 106077892 106077272 4.360000e-168 601.0
21 TraesCS2D01G329800 chr6D 93.407 91 4 1 2970 3058 411993583 411993673 1.910000e-27 134.0
22 TraesCS2D01G329800 chr7D 83.780 635 96 5 2118 2746 628134506 628135139 2.030000e-166 595.0
23 TraesCS2D01G329800 chr7D 83.754 634 93 9 2111 2739 182613638 182613010 2.630000e-165 592.0
24 TraesCS2D01G329800 chr7B 94.186 86 5 0 2973 3058 219625867 219625952 6.880000e-27 132.0
25 TraesCS2D01G329800 chr5D 93.103 87 6 0 2972 3058 529174442 529174528 8.900000e-26 128.0
26 TraesCS2D01G329800 chr1D 93.103 87 6 0 2972 3058 329618174 329618260 8.900000e-26 128.0
27 TraesCS2D01G329800 chr1D 95.122 41 2 0 2823 2863 364731823 364731783 7.080000e-07 65.8
28 TraesCS2D01G329800 chr3D 95.238 42 2 0 2822 2863 491957262 491957221 1.970000e-07 67.6
29 TraesCS2D01G329800 chr4B 91.489 47 2 2 2822 2866 636785759 636785713 2.550000e-06 63.9
30 TraesCS2D01G329800 chr1B 94.737 38 2 0 2826 2863 122360582 122360545 3.290000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G329800 chr2D 422824933 422827990 3057 True 5648 5648 100.0000 1 3058 1 chr2D.!!$R1 3057
1 TraesCS2D01G329800 chr2D 563759100 563759718 618 False 595 595 84.2440 2111 2724 1 chr2D.!!$F1 613
2 TraesCS2D01G329800 chr2D 619938241 619938864 623 False 582 582 83.6250 2116 2739 1 chr2D.!!$F2 623
3 TraesCS2D01G329800 chr2B 495492300 495494755 2455 True 1296 2386 92.4025 87 2108 2 chr2B.!!$R1 2021
4 TraesCS2D01G329800 chr2A 566082451 566085402 2951 False 1321 2362 91.6800 87 3058 3 chr2A.!!$F2 2971
5 TraesCS2D01G329800 chr7A 700634058 700634680 622 False 619 619 84.6890 2128 2750 1 chr7A.!!$F2 622
6 TraesCS2D01G329800 chr7A 700610819 700611441 622 False 603 603 84.2110 2128 2750 1 chr7A.!!$F1 622
7 TraesCS2D01G329800 chr5B 311547259 311547884 625 False 610 610 84.3950 2116 2738 1 chr5B.!!$F1 622
8 TraesCS2D01G329800 chr6D 29378918 29379557 639 False 606 606 83.9060 2116 2749 1 chr6D.!!$F1 633
9 TraesCS2D01G329800 chr6D 106077272 106077892 620 True 601 601 84.2440 2111 2727 1 chr6D.!!$R1 616
10 TraesCS2D01G329800 chr7D 628134506 628135139 633 False 595 595 83.7800 2118 2746 1 chr7D.!!$F1 628
11 TraesCS2D01G329800 chr7D 182613010 182613638 628 True 592 592 83.7540 2111 2739 1 chr7D.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.109781 CGTTTTGATCTTGCACCGGG 60.110 55.0 6.32 0.0 0.0 5.73 F
1004 1069 0.036388 CCACCACACGTCCTAGCAAT 60.036 55.0 0.00 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 1205 0.815095 TACACAGACGGACGCATCAT 59.185 50.000 0.0 0.0 0.00 2.45 R
2766 3281 1.132453 GCCCAATAGGAACACGAAAGC 59.868 52.381 0.0 0.0 38.24 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.696917 AAGCAAGAAAAATATGTAAAGTTGAGG 57.303 29.630 0.00 0.00 0.00 3.86
31 32 8.306761 AGCAAGAAAAATATGTAAAGTTGAGGG 58.693 33.333 0.00 0.00 0.00 4.30
32 33 7.063426 GCAAGAAAAATATGTAAAGTTGAGGGC 59.937 37.037 0.00 0.00 0.00 5.19
33 34 7.170393 AGAAAAATATGTAAAGTTGAGGGCC 57.830 36.000 0.00 0.00 0.00 5.80
34 35 5.932619 AAAATATGTAAAGTTGAGGGCCC 57.067 39.130 16.46 16.46 0.00 5.80
35 36 4.601406 AATATGTAAAGTTGAGGGCCCA 57.399 40.909 27.56 0.00 0.00 5.36
36 37 2.215942 ATGTAAAGTTGAGGGCCCAC 57.784 50.000 27.56 20.25 0.00 4.61
37 38 0.250553 TGTAAAGTTGAGGGCCCACG 60.251 55.000 27.56 0.00 0.00 4.94
38 39 0.250597 GTAAAGTTGAGGGCCCACGT 60.251 55.000 27.56 9.22 0.00 4.49
39 40 0.475044 TAAAGTTGAGGGCCCACGTT 59.525 50.000 27.56 19.81 0.00 3.99
40 41 0.396556 AAAGTTGAGGGCCCACGTTT 60.397 50.000 27.56 15.67 0.00 3.60
41 42 0.396556 AAGTTGAGGGCCCACGTTTT 60.397 50.000 27.56 9.91 0.00 2.43
42 43 1.106944 AGTTGAGGGCCCACGTTTTG 61.107 55.000 27.56 0.00 0.00 2.44
43 44 1.104577 GTTGAGGGCCCACGTTTTGA 61.105 55.000 27.56 0.00 0.00 2.69
44 45 0.178975 TTGAGGGCCCACGTTTTGAT 60.179 50.000 27.56 0.00 0.00 2.57
45 46 0.608035 TGAGGGCCCACGTTTTGATC 60.608 55.000 27.56 9.98 0.00 2.92
46 47 0.322546 GAGGGCCCACGTTTTGATCT 60.323 55.000 27.56 0.00 0.00 2.75
47 48 0.112412 AGGGCCCACGTTTTGATCTT 59.888 50.000 27.56 0.00 0.00 2.40
48 49 0.243636 GGGCCCACGTTTTGATCTTG 59.756 55.000 19.95 0.00 0.00 3.02
49 50 0.388520 GGCCCACGTTTTGATCTTGC 60.389 55.000 0.00 0.00 0.00 4.01
50 51 0.313672 GCCCACGTTTTGATCTTGCA 59.686 50.000 0.00 0.00 0.00 4.08
51 52 1.930371 GCCCACGTTTTGATCTTGCAC 60.930 52.381 0.00 0.00 0.00 4.57
52 53 1.335872 CCCACGTTTTGATCTTGCACC 60.336 52.381 0.00 0.00 0.00 5.01
53 54 1.662876 CCACGTTTTGATCTTGCACCG 60.663 52.381 0.00 0.00 0.00 4.94
54 55 0.591170 ACGTTTTGATCTTGCACCGG 59.409 50.000 0.00 0.00 0.00 5.28
55 56 0.109781 CGTTTTGATCTTGCACCGGG 60.110 55.000 6.32 0.00 0.00 5.73
56 57 0.388520 GTTTTGATCTTGCACCGGGC 60.389 55.000 6.32 7.25 45.13 6.13
57 58 1.531739 TTTTGATCTTGCACCGGGCC 61.532 55.000 6.32 0.00 43.89 5.80
58 59 2.424842 TTTGATCTTGCACCGGGCCT 62.425 55.000 6.32 0.00 43.89 5.19
59 60 2.514824 GATCTTGCACCGGGCCTC 60.515 66.667 6.32 0.00 43.89 4.70
60 61 4.115199 ATCTTGCACCGGGCCTCC 62.115 66.667 6.32 0.00 43.89 4.30
72 73 2.711978 GGGCCTCCGTTTTCTTAGAT 57.288 50.000 0.84 0.00 0.00 1.98
73 74 3.832615 GGGCCTCCGTTTTCTTAGATA 57.167 47.619 0.84 0.00 0.00 1.98
74 75 3.464907 GGGCCTCCGTTTTCTTAGATAC 58.535 50.000 0.84 0.00 0.00 2.24
75 76 3.118519 GGGCCTCCGTTTTCTTAGATACA 60.119 47.826 0.84 0.00 0.00 2.29
76 77 4.120589 GGCCTCCGTTTTCTTAGATACAG 58.879 47.826 0.00 0.00 0.00 2.74
77 78 3.556365 GCCTCCGTTTTCTTAGATACAGC 59.444 47.826 0.00 0.00 0.00 4.40
78 79 4.120589 CCTCCGTTTTCTTAGATACAGCC 58.879 47.826 0.00 0.00 0.00 4.85
79 80 4.120589 CTCCGTTTTCTTAGATACAGCCC 58.879 47.826 0.00 0.00 0.00 5.19
80 81 3.773119 TCCGTTTTCTTAGATACAGCCCT 59.227 43.478 0.00 0.00 0.00 5.19
81 82 3.871594 CCGTTTTCTTAGATACAGCCCTG 59.128 47.826 0.00 0.00 0.00 4.45
82 83 3.871594 CGTTTTCTTAGATACAGCCCTGG 59.128 47.826 0.00 0.00 34.19 4.45
83 84 4.623171 CGTTTTCTTAGATACAGCCCTGGT 60.623 45.833 0.00 0.00 34.19 4.00
84 85 5.254115 GTTTTCTTAGATACAGCCCTGGTT 58.746 41.667 0.00 0.00 34.19 3.67
85 86 5.514500 TTTCTTAGATACAGCCCTGGTTT 57.486 39.130 0.00 0.00 34.19 3.27
162 164 3.031736 ACGTACAGCTCTCCATTATGGT 58.968 45.455 11.39 0.00 39.03 3.55
163 165 3.451178 ACGTACAGCTCTCCATTATGGTT 59.549 43.478 11.39 0.00 39.03 3.67
164 166 4.051922 CGTACAGCTCTCCATTATGGTTC 58.948 47.826 11.39 0.00 39.03 3.62
256 260 7.051623 TCACCGGCTATATATCTTTGTTTTGT 58.948 34.615 0.00 0.00 0.00 2.83
374 382 4.878397 GCTGACCTGCAATTATAGAAGTGT 59.122 41.667 0.00 0.00 33.15 3.55
401 429 3.181497 CCATCAAGTAGCCAACCATTTCG 60.181 47.826 0.00 0.00 0.00 3.46
408 436 4.583073 AGTAGCCAACCATTTCGTTTTTCT 59.417 37.500 0.00 0.00 0.00 2.52
457 485 0.322277 ACAGGAGCATGACAAGGCAG 60.322 55.000 0.00 0.00 34.88 4.85
462 490 1.211969 GCATGACAAGGCAGTGCTG 59.788 57.895 16.11 9.03 31.96 4.41
485 513 2.520536 AAGCAGGGGACGTCAAGCT 61.521 57.895 18.91 16.43 0.00 3.74
512 540 2.084546 GGTCAAACCAGTGCCATCTAC 58.915 52.381 0.00 0.00 38.42 2.59
514 542 3.003480 GTCAAACCAGTGCCATCTACTC 58.997 50.000 0.00 0.00 0.00 2.59
515 543 2.027192 TCAAACCAGTGCCATCTACTCC 60.027 50.000 0.00 0.00 0.00 3.85
516 544 1.958288 AACCAGTGCCATCTACTCCT 58.042 50.000 0.00 0.00 0.00 3.69
517 545 2.848678 ACCAGTGCCATCTACTCCTA 57.151 50.000 0.00 0.00 0.00 2.94
518 546 2.389715 ACCAGTGCCATCTACTCCTAC 58.610 52.381 0.00 0.00 0.00 3.18
519 547 2.023888 ACCAGTGCCATCTACTCCTACT 60.024 50.000 0.00 0.00 0.00 2.57
520 548 3.204606 ACCAGTGCCATCTACTCCTACTA 59.795 47.826 0.00 0.00 0.00 1.82
521 549 3.823873 CCAGTGCCATCTACTCCTACTAG 59.176 52.174 0.00 0.00 0.00 2.57
522 550 4.465886 CAGTGCCATCTACTCCTACTAGT 58.534 47.826 0.00 0.00 0.00 2.57
545 573 4.090090 ACCTCTCAACTGCTACAGTACAT 58.910 43.478 0.00 0.00 44.62 2.29
609 637 4.194640 CACGAATCATGTTCCTGGATTCT 58.805 43.478 0.00 0.00 42.86 2.40
610 638 5.359756 CACGAATCATGTTCCTGGATTCTA 58.640 41.667 0.00 0.00 42.86 2.10
669 697 3.825328 TGCTTTTTCCTTGAGAGCTCTT 58.175 40.909 19.36 0.91 34.56 2.85
670 698 4.973168 TGCTTTTTCCTTGAGAGCTCTTA 58.027 39.130 19.36 11.60 34.56 2.10
671 699 5.564550 TGCTTTTTCCTTGAGAGCTCTTAT 58.435 37.500 19.36 0.00 34.56 1.73
712 740 6.381801 GGCACATGTCTATATAATTTGCACC 58.618 40.000 0.00 0.00 0.00 5.01
716 744 9.454585 CACATGTCTATATAATTTGCACCTTTG 57.545 33.333 0.00 0.00 0.00 2.77
718 746 7.038154 TGTCTATATAATTTGCACCTTTGGC 57.962 36.000 0.00 0.00 0.00 4.52
722 751 1.965935 AATTTGCACCTTTGGCCAAC 58.034 45.000 20.35 6.91 0.00 3.77
736 765 3.758425 TGGCCAACTTTTTACTACTCCC 58.242 45.455 0.61 0.00 0.00 4.30
741 770 6.470278 GCCAACTTTTTACTACTCCCTTCTA 58.530 40.000 0.00 0.00 0.00 2.10
742 771 6.370994 GCCAACTTTTTACTACTCCCTTCTAC 59.629 42.308 0.00 0.00 0.00 2.59
744 773 7.447594 CAACTTTTTACTACTCCCTTCTACCA 58.552 38.462 0.00 0.00 0.00 3.25
745 774 7.242322 ACTTTTTACTACTCCCTTCTACCAG 57.758 40.000 0.00 0.00 0.00 4.00
746 775 5.672421 TTTTACTACTCCCTTCTACCAGC 57.328 43.478 0.00 0.00 0.00 4.85
747 776 4.604784 TTACTACTCCCTTCTACCAGCT 57.395 45.455 0.00 0.00 0.00 4.24
748 777 3.021177 ACTACTCCCTTCTACCAGCTC 57.979 52.381 0.00 0.00 0.00 4.09
749 778 1.950909 CTACTCCCTTCTACCAGCTCG 59.049 57.143 0.00 0.00 0.00 5.03
750 779 0.331954 ACTCCCTTCTACCAGCTCGA 59.668 55.000 0.00 0.00 0.00 4.04
751 780 1.063567 ACTCCCTTCTACCAGCTCGAT 60.064 52.381 0.00 0.00 0.00 3.59
752 781 2.175069 ACTCCCTTCTACCAGCTCGATA 59.825 50.000 0.00 0.00 0.00 2.92
753 782 2.817258 CTCCCTTCTACCAGCTCGATAG 59.183 54.545 0.00 0.00 0.00 2.08
788 817 1.610522 AGATGTCTTGCTTTGTGTGGC 59.389 47.619 0.00 0.00 0.00 5.01
794 824 0.665835 TTGCTTTGTGTGGCTTACGG 59.334 50.000 0.00 0.00 0.00 4.02
802 832 2.303600 TGTGTGGCTTACGGTATCCTTT 59.696 45.455 8.00 0.00 0.00 3.11
803 833 3.244630 TGTGTGGCTTACGGTATCCTTTT 60.245 43.478 8.00 0.00 0.00 2.27
828 858 3.703556 TGTTTGAATTGGGCAAAGTCTGA 59.296 39.130 3.48 0.00 36.06 3.27
1003 1037 1.369692 CCACCACACGTCCTAGCAA 59.630 57.895 0.00 0.00 0.00 3.91
1004 1069 0.036388 CCACCACACGTCCTAGCAAT 60.036 55.000 0.00 0.00 0.00 3.56
1122 1187 6.831976 ACACCATGAGAGTAAGAAGTTCTTT 58.168 36.000 22.66 6.48 37.89 2.52
1140 1205 7.054124 AGTTCTTTGAGTCCAGTTTATGTTGA 58.946 34.615 0.00 0.00 0.00 3.18
1150 1215 4.496341 CCAGTTTATGTTGATGATGCGTCC 60.496 45.833 2.83 0.00 0.00 4.79
1160 1237 0.170339 TGATGCGTCCGTCTGTGTAG 59.830 55.000 2.83 0.00 0.00 2.74
1264 1341 4.704833 GCTCTCAAGGTGGCCGCA 62.705 66.667 19.98 0.00 0.00 5.69
1265 1342 2.032528 CTCTCAAGGTGGCCGCAA 59.967 61.111 19.98 0.00 0.00 4.85
1284 1361 4.372235 CGTCAGCGGTAAGTACGG 57.628 61.111 0.00 0.00 0.00 4.02
1285 1362 1.796151 CGTCAGCGGTAAGTACGGA 59.204 57.895 0.00 0.00 0.00 4.69
1298 1375 0.738412 GTACGGACCCGGTGTTGATG 60.738 60.000 13.43 0.00 44.69 3.07
1303 1380 1.210967 GGACCCGGTGTTGATGGATTA 59.789 52.381 0.00 0.00 0.00 1.75
1315 1397 5.533528 TGTTGATGGATTATTCCTCTGCATG 59.466 40.000 5.31 0.00 43.07 4.06
1448 1530 5.104527 TCTGACCAAGAAACTGAAGAAGGAA 60.105 40.000 0.00 0.00 29.54 3.36
1721 1803 1.582968 GTCCTTCTACCACGCGTCA 59.417 57.895 9.86 0.00 0.00 4.35
2035 2535 7.437862 TCCTTGAATTTGAATTTAGTGCACAAC 59.562 33.333 21.04 4.00 0.00 3.32
2059 2559 1.067071 AGTTAGCGGCTTGTACACCTC 60.067 52.381 8.26 0.00 0.00 3.85
2163 2663 9.619316 CTTCAATTATGGATGTACAACGAAAAA 57.381 29.630 0.00 0.00 0.00 1.94
2219 2720 2.427453 CCACCTAGCGATGACTACAAGT 59.573 50.000 0.00 0.00 0.00 3.16
2220 2721 3.439293 CACCTAGCGATGACTACAAGTG 58.561 50.000 0.00 0.00 0.00 3.16
2281 2783 2.282462 ACCGGAGCTGGGCAAAAG 60.282 61.111 9.46 0.00 0.00 2.27
2318 2820 0.675083 TGGGAAGTCGTCGTGCTAAA 59.325 50.000 0.00 0.00 0.00 1.85
2353 2858 1.164411 CGCACCAGATAAGCAACCAA 58.836 50.000 0.00 0.00 0.00 3.67
2379 2887 6.513556 CGATGAAGAGGAGCGTAGATCTAAAA 60.514 42.308 3.40 0.00 45.45 1.52
2403 2911 2.104111 TCCAACCTGAAGACACACGAAT 59.896 45.455 0.00 0.00 0.00 3.34
2422 2930 5.284660 ACGAATATAGACAAACGACGAACAC 59.715 40.000 0.00 0.00 0.00 3.32
2440 2948 3.356290 ACACATCTAAGCAAATCCACCC 58.644 45.455 0.00 0.00 0.00 4.61
2508 3016 1.302511 GATGCACCACCGGAACAGT 60.303 57.895 9.46 0.00 0.00 3.55
2525 3033 2.040884 TGGCTAGGCGGGGAGAAT 60.041 61.111 12.19 0.00 0.00 2.40
2581 3091 5.049405 CGCCTTTCTGAATAAGACACAAACT 60.049 40.000 0.00 0.00 33.46 2.66
2754 3269 2.588314 GCTGATGCCTGAGGAGCG 60.588 66.667 0.65 0.00 0.00 5.03
2758 3273 4.479993 ATGCCTGAGGAGCGTGCC 62.480 66.667 0.65 0.00 0.00 5.01
2760 3275 3.461773 GCCTGAGGAGCGTGCCTA 61.462 66.667 0.65 0.00 38.73 3.93
2761 3276 2.801631 GCCTGAGGAGCGTGCCTAT 61.802 63.158 0.65 0.00 38.73 2.57
2762 3277 1.068753 CCTGAGGAGCGTGCCTATG 59.931 63.158 0.00 0.00 38.73 2.23
2763 3278 1.593750 CTGAGGAGCGTGCCTATGC 60.594 63.158 0.00 0.00 38.73 3.14
2773 3288 3.173540 TGCCTATGCATGCTTTCGT 57.826 47.368 20.33 2.48 44.23 3.85
2774 3289 0.734309 TGCCTATGCATGCTTTCGTG 59.266 50.000 20.33 3.81 44.23 4.35
2775 3290 0.734889 GCCTATGCATGCTTTCGTGT 59.265 50.000 20.33 0.00 37.47 4.49
2776 3291 1.133025 GCCTATGCATGCTTTCGTGTT 59.867 47.619 20.33 0.00 37.47 3.32
2777 3292 2.792542 GCCTATGCATGCTTTCGTGTTC 60.793 50.000 20.33 0.00 37.47 3.18
2778 3293 2.223340 CCTATGCATGCTTTCGTGTTCC 60.223 50.000 20.33 0.00 0.00 3.62
2779 3294 1.538047 ATGCATGCTTTCGTGTTCCT 58.462 45.000 20.33 0.00 0.00 3.36
2780 3295 2.177394 TGCATGCTTTCGTGTTCCTA 57.823 45.000 20.33 0.00 0.00 2.94
2781 3296 2.710377 TGCATGCTTTCGTGTTCCTAT 58.290 42.857 20.33 0.00 0.00 2.57
2782 3297 3.081061 TGCATGCTTTCGTGTTCCTATT 58.919 40.909 20.33 0.00 0.00 1.73
2783 3298 3.119884 TGCATGCTTTCGTGTTCCTATTG 60.120 43.478 20.33 0.00 0.00 1.90
2784 3299 3.731867 GCATGCTTTCGTGTTCCTATTGG 60.732 47.826 11.37 0.00 0.00 3.16
2785 3300 2.432444 TGCTTTCGTGTTCCTATTGGG 58.568 47.619 0.00 0.00 0.00 4.12
2804 3319 3.944015 TGGGCTTGTGAAAACAAATTTGG 59.056 39.130 21.74 4.79 0.00 3.28
2810 3325 4.187694 TGTGAAAACAAATTTGGAGCCAC 58.812 39.130 21.74 20.52 0.00 5.01
2816 3331 3.157087 ACAAATTTGGAGCCACGAGAAT 58.843 40.909 21.74 0.00 0.00 2.40
2834 3351 6.071334 ACGAGAATTAGAGAACCAATCTGTGA 60.071 38.462 0.00 0.00 38.96 3.58
2874 3391 7.768807 GATAGTGGTATCCTAGTCAATCAGT 57.231 40.000 0.00 0.00 30.28 3.41
2883 3400 5.734720 TCCTAGTCAATCAGTGATCAAACC 58.265 41.667 5.98 0.00 38.90 3.27
2887 3404 5.813383 AGTCAATCAGTGATCAAACCTCAT 58.187 37.500 5.98 0.00 38.90 2.90
2902 3419 2.821969 ACCTCATGTTGCCACTTTGATC 59.178 45.455 0.00 0.00 0.00 2.92
2977 3494 1.623811 CCACTAGTGGCTAAGTGGTGT 59.376 52.381 28.48 0.00 44.73 4.16
2991 3508 6.294508 GCTAAGTGGTGTGGTGAACAAATTAT 60.295 38.462 0.00 0.00 41.57 1.28
2998 3515 6.386654 GTGTGGTGAACAAATTATAGTTGGG 58.613 40.000 3.97 0.00 41.57 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.545615 GGCCCTCAACTTTACATATTTTTCTTG 59.454 37.037 0.00 0.00 0.00 3.02
9 10 6.154534 GGGCCCTCAACTTTACATATTTTTCT 59.845 38.462 17.04 0.00 0.00 2.52
10 11 6.071051 TGGGCCCTCAACTTTACATATTTTTC 60.071 38.462 25.70 0.00 0.00 2.29
11 12 5.782845 TGGGCCCTCAACTTTACATATTTTT 59.217 36.000 25.70 0.00 0.00 1.94
12 13 5.186992 GTGGGCCCTCAACTTTACATATTTT 59.813 40.000 25.70 0.00 0.00 1.82
13 14 4.709886 GTGGGCCCTCAACTTTACATATTT 59.290 41.667 25.70 0.00 0.00 1.40
14 15 4.278310 GTGGGCCCTCAACTTTACATATT 58.722 43.478 25.70 0.00 0.00 1.28
15 16 3.684413 CGTGGGCCCTCAACTTTACATAT 60.684 47.826 25.70 0.00 0.00 1.78
16 17 2.355310 CGTGGGCCCTCAACTTTACATA 60.355 50.000 25.70 0.00 0.00 2.29
17 18 1.613255 CGTGGGCCCTCAACTTTACAT 60.613 52.381 25.70 0.00 0.00 2.29
18 19 0.250553 CGTGGGCCCTCAACTTTACA 60.251 55.000 25.70 0.00 0.00 2.41
19 20 0.250597 ACGTGGGCCCTCAACTTTAC 60.251 55.000 25.70 9.12 0.00 2.01
20 21 0.475044 AACGTGGGCCCTCAACTTTA 59.525 50.000 25.70 0.00 0.00 1.85
21 22 0.396556 AAACGTGGGCCCTCAACTTT 60.397 50.000 25.70 10.12 0.00 2.66
22 23 0.396556 AAAACGTGGGCCCTCAACTT 60.397 50.000 25.70 9.69 0.00 2.66
23 24 1.106944 CAAAACGTGGGCCCTCAACT 61.107 55.000 25.70 3.19 0.00 3.16
24 25 1.104577 TCAAAACGTGGGCCCTCAAC 61.105 55.000 25.70 12.48 0.00 3.18
25 26 0.178975 ATCAAAACGTGGGCCCTCAA 60.179 50.000 25.70 0.00 0.00 3.02
26 27 0.608035 GATCAAAACGTGGGCCCTCA 60.608 55.000 25.70 0.00 0.00 3.86
27 28 0.322546 AGATCAAAACGTGGGCCCTC 60.323 55.000 25.70 19.74 0.00 4.30
28 29 0.112412 AAGATCAAAACGTGGGCCCT 59.888 50.000 25.70 0.00 0.00 5.19
29 30 0.243636 CAAGATCAAAACGTGGGCCC 59.756 55.000 17.59 17.59 0.00 5.80
30 31 0.388520 GCAAGATCAAAACGTGGGCC 60.389 55.000 0.00 0.00 0.00 5.80
31 32 0.313672 TGCAAGATCAAAACGTGGGC 59.686 50.000 0.00 0.00 0.00 5.36
32 33 1.335872 GGTGCAAGATCAAAACGTGGG 60.336 52.381 0.00 0.00 0.00 4.61
33 34 1.662876 CGGTGCAAGATCAAAACGTGG 60.663 52.381 0.00 0.00 0.00 4.94
34 35 1.662876 CCGGTGCAAGATCAAAACGTG 60.663 52.381 0.00 0.00 0.00 4.49
35 36 0.591170 CCGGTGCAAGATCAAAACGT 59.409 50.000 0.00 0.00 0.00 3.99
36 37 0.109781 CCCGGTGCAAGATCAAAACG 60.110 55.000 0.00 0.00 0.00 3.60
37 38 0.388520 GCCCGGTGCAAGATCAAAAC 60.389 55.000 9.72 0.00 40.77 2.43
38 39 1.531739 GGCCCGGTGCAAGATCAAAA 61.532 55.000 15.49 0.00 43.89 2.44
39 40 1.976474 GGCCCGGTGCAAGATCAAA 60.976 57.895 15.49 0.00 43.89 2.69
40 41 2.361104 GGCCCGGTGCAAGATCAA 60.361 61.111 15.49 0.00 43.89 2.57
41 42 3.329542 GAGGCCCGGTGCAAGATCA 62.330 63.158 15.49 0.00 43.89 2.92
42 43 2.514824 GAGGCCCGGTGCAAGATC 60.515 66.667 15.49 5.45 43.89 2.75
43 44 4.115199 GGAGGCCCGGTGCAAGAT 62.115 66.667 15.49 0.29 43.89 2.40
53 54 2.711978 ATCTAAGAAAACGGAGGCCC 57.288 50.000 0.00 0.00 0.00 5.80
54 55 4.120589 CTGTATCTAAGAAAACGGAGGCC 58.879 47.826 0.00 0.00 0.00 5.19
55 56 3.556365 GCTGTATCTAAGAAAACGGAGGC 59.444 47.826 0.00 0.00 0.00 4.70
56 57 4.120589 GGCTGTATCTAAGAAAACGGAGG 58.879 47.826 0.00 0.00 0.00 4.30
57 58 4.120589 GGGCTGTATCTAAGAAAACGGAG 58.879 47.826 0.00 0.00 0.00 4.63
58 59 3.773119 AGGGCTGTATCTAAGAAAACGGA 59.227 43.478 0.00 0.00 0.00 4.69
59 60 3.871594 CAGGGCTGTATCTAAGAAAACGG 59.128 47.826 0.00 0.00 0.00 4.44
60 61 3.871594 CCAGGGCTGTATCTAAGAAAACG 59.128 47.826 0.00 0.00 0.00 3.60
61 62 4.844884 ACCAGGGCTGTATCTAAGAAAAC 58.155 43.478 0.00 0.00 0.00 2.43
62 63 5.514500 AACCAGGGCTGTATCTAAGAAAA 57.486 39.130 0.00 0.00 0.00 2.29
63 64 5.222048 ACAAACCAGGGCTGTATCTAAGAAA 60.222 40.000 0.00 0.00 0.00 2.52
64 65 4.288626 ACAAACCAGGGCTGTATCTAAGAA 59.711 41.667 0.00 0.00 0.00 2.52
65 66 3.844211 ACAAACCAGGGCTGTATCTAAGA 59.156 43.478 0.00 0.00 0.00 2.10
66 67 4.222124 ACAAACCAGGGCTGTATCTAAG 57.778 45.455 0.00 0.00 0.00 2.18
67 68 4.650972 AACAAACCAGGGCTGTATCTAA 57.349 40.909 0.00 0.00 0.00 2.10
68 69 4.202524 ACAAACAAACCAGGGCTGTATCTA 60.203 41.667 0.00 0.00 0.00 1.98
69 70 3.157087 CAAACAAACCAGGGCTGTATCT 58.843 45.455 0.00 0.00 0.00 1.98
70 71 2.890945 ACAAACAAACCAGGGCTGTATC 59.109 45.455 0.00 0.00 0.00 2.24
71 72 2.890945 GACAAACAAACCAGGGCTGTAT 59.109 45.455 0.00 0.00 0.00 2.29
72 73 2.303175 GACAAACAAACCAGGGCTGTA 58.697 47.619 0.00 0.00 0.00 2.74
73 74 1.111277 GACAAACAAACCAGGGCTGT 58.889 50.000 0.00 0.00 0.00 4.40
74 75 1.067516 CTGACAAACAAACCAGGGCTG 59.932 52.381 0.00 0.00 0.00 4.85
75 76 1.402787 CTGACAAACAAACCAGGGCT 58.597 50.000 0.00 0.00 0.00 5.19
76 77 0.389025 CCTGACAAACAAACCAGGGC 59.611 55.000 0.00 0.00 41.76 5.19
79 80 4.578516 TCATGTACCTGACAAACAAACCAG 59.421 41.667 0.00 0.00 42.78 4.00
80 81 4.527944 TCATGTACCTGACAAACAAACCA 58.472 39.130 0.00 0.00 42.78 3.67
81 82 5.240623 TCATCATGTACCTGACAAACAAACC 59.759 40.000 2.71 0.00 42.78 3.27
82 83 6.204688 TCTCATCATGTACCTGACAAACAAAC 59.795 38.462 2.71 0.00 42.78 2.93
83 84 6.295249 TCTCATCATGTACCTGACAAACAAA 58.705 36.000 2.71 0.00 42.78 2.83
84 85 5.863965 TCTCATCATGTACCTGACAAACAA 58.136 37.500 2.71 0.00 42.78 2.83
85 86 5.482163 TCTCATCATGTACCTGACAAACA 57.518 39.130 2.71 0.00 42.78 2.83
138 140 4.262207 CCATAATGGAGAGCTGTACGTGAT 60.262 45.833 0.00 0.00 40.96 3.06
162 164 9.762933 CCAAATGGTTAGATTTTCTTTCTTGAA 57.237 29.630 0.00 0.00 0.00 2.69
215 219 3.128589 CCGGTGAAATCAACACAATAGGG 59.871 47.826 0.00 0.00 39.65 3.53
224 228 7.907214 AAGATATATAGCCGGTGAAATCAAC 57.093 36.000 1.90 0.00 0.00 3.18
256 260 2.639839 CTCTGGGGAGTTTGAAGGAGAA 59.360 50.000 0.00 0.00 35.03 2.87
285 289 5.411781 GTCTCTGATGTCGTTAATTGACCT 58.588 41.667 7.96 0.00 35.46 3.85
374 382 2.554344 GGTTGGCTACTTGATGGGTGAA 60.554 50.000 0.00 0.00 0.00 3.18
427 455 4.447054 GTCATGCTCCTGTCATCTTTATCG 59.553 45.833 0.00 0.00 0.00 2.92
462 490 4.681978 ACGTCCCCTGCTTGCGAC 62.682 66.667 0.00 0.00 0.00 5.19
512 540 4.577283 GCAGTTGAGAGGTACTAGTAGGAG 59.423 50.000 1.87 0.00 41.55 3.69
514 542 4.528920 AGCAGTTGAGAGGTACTAGTAGG 58.471 47.826 1.87 0.00 41.55 3.18
515 543 6.114089 TGTAGCAGTTGAGAGGTACTAGTAG 58.886 44.000 1.87 0.00 41.55 2.57
516 544 6.058553 TGTAGCAGTTGAGAGGTACTAGTA 57.941 41.667 0.00 0.00 41.55 1.82
517 545 4.919793 TGTAGCAGTTGAGAGGTACTAGT 58.080 43.478 0.00 0.00 41.55 2.57
518 546 4.944930 ACTGTAGCAGTTGAGAGGTACTAG 59.055 45.833 0.00 0.00 42.59 2.57
519 547 4.919793 ACTGTAGCAGTTGAGAGGTACTA 58.080 43.478 0.00 0.00 42.59 1.82
520 548 3.768878 ACTGTAGCAGTTGAGAGGTACT 58.231 45.455 0.00 0.00 42.59 2.73
521 549 4.458295 TGTACTGTAGCAGTTGAGAGGTAC 59.542 45.833 7.11 0.00 42.59 3.34
522 550 4.659115 TGTACTGTAGCAGTTGAGAGGTA 58.341 43.478 7.11 0.00 42.59 3.08
545 573 0.661552 GCGGCTGTGACTAGATCGTA 59.338 55.000 0.00 0.00 0.00 3.43
669 697 3.521531 TGCCCTGGAGTGTTGACATAATA 59.478 43.478 0.00 0.00 0.00 0.98
670 698 2.308570 TGCCCTGGAGTGTTGACATAAT 59.691 45.455 0.00 0.00 0.00 1.28
671 699 1.702401 TGCCCTGGAGTGTTGACATAA 59.298 47.619 0.00 0.00 0.00 1.90
712 740 5.278808 GGGAGTAGTAAAAAGTTGGCCAAAG 60.279 44.000 22.47 0.00 0.00 2.77
716 744 4.030314 AGGGAGTAGTAAAAAGTTGGCC 57.970 45.455 0.00 0.00 0.00 5.36
718 746 6.877855 GGTAGAAGGGAGTAGTAAAAAGTTGG 59.122 42.308 0.00 0.00 0.00 3.77
722 751 6.070710 AGCTGGTAGAAGGGAGTAGTAAAAAG 60.071 42.308 0.00 0.00 0.00 2.27
736 765 6.980978 TCATTTTTCTATCGAGCTGGTAGAAG 59.019 38.462 14.46 7.42 36.25 2.85
741 770 3.865745 CGTCATTTTTCTATCGAGCTGGT 59.134 43.478 0.00 0.00 0.00 4.00
742 771 3.246226 CCGTCATTTTTCTATCGAGCTGG 59.754 47.826 0.00 0.00 0.00 4.85
744 773 3.118738 ACCCGTCATTTTTCTATCGAGCT 60.119 43.478 0.00 0.00 0.00 4.09
745 774 3.001330 CACCCGTCATTTTTCTATCGAGC 59.999 47.826 0.00 0.00 0.00 5.03
746 775 4.430007 TCACCCGTCATTTTTCTATCGAG 58.570 43.478 0.00 0.00 0.00 4.04
747 776 4.158949 TCTCACCCGTCATTTTTCTATCGA 59.841 41.667 0.00 0.00 0.00 3.59
748 777 4.430007 TCTCACCCGTCATTTTTCTATCG 58.570 43.478 0.00 0.00 0.00 2.92
749 778 5.817816 ACATCTCACCCGTCATTTTTCTATC 59.182 40.000 0.00 0.00 0.00 2.08
750 779 5.745227 ACATCTCACCCGTCATTTTTCTAT 58.255 37.500 0.00 0.00 0.00 1.98
751 780 5.046591 AGACATCTCACCCGTCATTTTTCTA 60.047 40.000 0.00 0.00 31.92 2.10
752 781 4.003648 GACATCTCACCCGTCATTTTTCT 58.996 43.478 0.00 0.00 0.00 2.52
753 782 4.003648 AGACATCTCACCCGTCATTTTTC 58.996 43.478 0.00 0.00 31.92 2.29
761 790 0.687354 AAGCAAGACATCTCACCCGT 59.313 50.000 0.00 0.00 0.00 5.28
794 824 7.821846 TGCCCAATTCAAACATAAAAAGGATAC 59.178 33.333 0.00 0.00 0.00 2.24
802 832 6.705381 CAGACTTTGCCCAATTCAAACATAAA 59.295 34.615 0.00 0.00 31.05 1.40
803 833 6.041409 TCAGACTTTGCCCAATTCAAACATAA 59.959 34.615 0.00 0.00 31.05 1.90
828 858 1.421268 TGAGAATGTGACTTGGCACCT 59.579 47.619 3.97 0.00 37.99 4.00
905 939 0.179081 GACAAGGGCTACGGATGACC 60.179 60.000 0.00 0.00 0.00 4.02
921 955 0.934496 CGTTTTTCTGGTCGCTGACA 59.066 50.000 10.14 0.00 33.68 3.58
1004 1069 1.617322 CCCGTATGGCTGTAGAGCTA 58.383 55.000 12.15 6.04 45.44 3.32
1058 1123 4.398044 TCAAGGGATTCCGAATAAACAAGC 59.602 41.667 0.00 0.00 38.33 4.01
1122 1187 5.355071 GCATCATCAACATAAACTGGACTCA 59.645 40.000 0.00 0.00 0.00 3.41
1140 1205 0.815095 TACACAGACGGACGCATCAT 59.185 50.000 0.00 0.00 0.00 2.45
1160 1237 1.623973 GGCGGTTCAGACGTGTTAGC 61.624 60.000 0.00 0.00 0.00 3.09
1182 1259 4.633126 TGATCTCCTTCTGAAAGATTTGCG 59.367 41.667 6.16 0.00 46.36 4.85
1284 1361 2.702592 TAATCCATCAACACCGGGTC 57.297 50.000 6.32 0.00 0.00 4.46
1285 1362 3.551846 GAATAATCCATCAACACCGGGT 58.448 45.455 6.32 0.00 0.00 5.28
1298 1375 3.252701 CACTGCATGCAGAGGAATAATCC 59.747 47.826 45.50 2.37 46.30 3.01
1303 1380 2.502142 TTCACTGCATGCAGAGGAAT 57.498 45.000 45.50 25.70 46.30 3.01
1315 1397 2.231235 CCCACCCAGTTTAATTCACTGC 59.769 50.000 10.86 0.00 40.43 4.40
1891 1973 1.511318 TTGGCACCACGATGGAAACG 61.511 55.000 10.46 0.00 40.96 3.60
1976 2064 5.612725 ATGAACCAAAGAACACCACAATT 57.387 34.783 0.00 0.00 0.00 2.32
2035 2535 2.343544 GTGTACAAGCCGCTAACTAACG 59.656 50.000 0.00 0.00 0.00 3.18
2182 2683 3.375699 AGGTGGTCTACGGATCTTGATT 58.624 45.455 0.00 0.00 0.00 2.57
2186 2687 2.308690 GCTAGGTGGTCTACGGATCTT 58.691 52.381 0.00 0.00 0.00 2.40
2220 2721 1.137614 GCCTTCGGCTTGCTTTAGC 59.862 57.895 0.00 0.00 46.69 3.09
2281 2783 5.593679 TCCCAACTGTATACTAGAGCAAC 57.406 43.478 4.17 0.00 0.00 4.17
2285 2787 5.589452 ACGACTTCCCAACTGTATACTAGAG 59.411 44.000 4.17 0.00 0.00 2.43
2287 2789 5.503683 CGACGACTTCCCAACTGTATACTAG 60.504 48.000 4.17 2.93 0.00 2.57
2353 2858 2.039818 TCTACGCTCCTCTTCATCGT 57.960 50.000 0.00 0.00 37.19 3.73
2379 2887 2.289072 CGTGTGTCTTCAGGTTGGATCT 60.289 50.000 0.00 0.00 0.00 2.75
2403 2911 5.946298 AGATGTGTTCGTCGTTTGTCTATA 58.054 37.500 0.00 0.00 35.01 1.31
2422 2930 4.096984 GTCTTGGGTGGATTTGCTTAGATG 59.903 45.833 0.00 0.00 0.00 2.90
2440 2948 1.227089 CTCCGGCGGATCTGTCTTG 60.227 63.158 31.23 11.40 0.00 3.02
2508 3016 2.040884 ATTCTCCCCGCCTAGCCA 60.041 61.111 0.00 0.00 0.00 4.75
2525 3033 2.975489 GGCTCCCTGAAGATGGATAAGA 59.025 50.000 0.00 0.00 0.00 2.10
2591 3101 6.512741 GCTCCGTTTTTAGATGTGTCTTTGAA 60.513 38.462 0.00 0.00 35.87 2.69
2758 3273 2.679837 AGGAACACGAAAGCATGCATAG 59.320 45.455 21.98 11.06 0.00 2.23
2759 3274 2.710377 AGGAACACGAAAGCATGCATA 58.290 42.857 21.98 0.00 0.00 3.14
2760 3275 1.538047 AGGAACACGAAAGCATGCAT 58.462 45.000 21.98 4.57 0.00 3.96
2761 3276 2.177394 TAGGAACACGAAAGCATGCA 57.823 45.000 21.98 0.00 0.00 3.96
2762 3277 3.429085 CAATAGGAACACGAAAGCATGC 58.571 45.455 10.51 10.51 0.00 4.06
2763 3278 3.181497 CCCAATAGGAACACGAAAGCATG 60.181 47.826 0.00 0.00 38.24 4.06
2764 3279 3.016736 CCCAATAGGAACACGAAAGCAT 58.983 45.455 0.00 0.00 38.24 3.79
2765 3280 2.432444 CCCAATAGGAACACGAAAGCA 58.568 47.619 0.00 0.00 38.24 3.91
2766 3281 1.132453 GCCCAATAGGAACACGAAAGC 59.868 52.381 0.00 0.00 38.24 3.51
2767 3282 2.711542 AGCCCAATAGGAACACGAAAG 58.288 47.619 0.00 0.00 38.24 2.62
2768 3283 2.817258 CAAGCCCAATAGGAACACGAAA 59.183 45.455 0.00 0.00 38.24 3.46
2769 3284 2.224670 ACAAGCCCAATAGGAACACGAA 60.225 45.455 0.00 0.00 38.24 3.85
2770 3285 1.349688 ACAAGCCCAATAGGAACACGA 59.650 47.619 0.00 0.00 38.24 4.35
2771 3286 1.468520 CACAAGCCCAATAGGAACACG 59.531 52.381 0.00 0.00 38.24 4.49
2772 3287 2.790433 TCACAAGCCCAATAGGAACAC 58.210 47.619 0.00 0.00 38.24 3.32
2773 3288 3.517296 TTCACAAGCCCAATAGGAACA 57.483 42.857 0.00 0.00 38.24 3.18
2774 3289 4.038642 TGTTTTCACAAGCCCAATAGGAAC 59.961 41.667 0.00 0.00 38.24 3.62
2775 3290 4.219115 TGTTTTCACAAGCCCAATAGGAA 58.781 39.130 0.00 0.00 38.24 3.36
2776 3291 3.838565 TGTTTTCACAAGCCCAATAGGA 58.161 40.909 0.00 0.00 38.24 2.94
2777 3292 4.599047 TTGTTTTCACAAGCCCAATAGG 57.401 40.909 0.00 0.00 38.03 2.57
2778 3293 7.354257 CAAATTTGTTTTCACAAGCCCAATAG 58.646 34.615 10.15 0.00 43.92 1.73
2779 3294 6.261826 CCAAATTTGTTTTCACAAGCCCAATA 59.738 34.615 16.73 0.00 43.92 1.90
2780 3295 5.067544 CCAAATTTGTTTTCACAAGCCCAAT 59.932 36.000 16.73 0.00 43.92 3.16
2781 3296 4.397417 CCAAATTTGTTTTCACAAGCCCAA 59.603 37.500 16.73 0.00 43.92 4.12
2782 3297 3.944015 CCAAATTTGTTTTCACAAGCCCA 59.056 39.130 16.73 0.00 43.92 5.36
2783 3298 4.195416 TCCAAATTTGTTTTCACAAGCCC 58.805 39.130 16.73 0.00 43.92 5.19
2784 3299 4.260743 GCTCCAAATTTGTTTTCACAAGCC 60.261 41.667 16.73 0.00 43.92 4.35
2785 3300 4.260743 GGCTCCAAATTTGTTTTCACAAGC 60.261 41.667 16.73 10.90 43.92 4.01
2804 3319 3.119101 TGGTTCTCTAATTCTCGTGGCTC 60.119 47.826 0.00 0.00 0.00 4.70
2810 3325 6.333416 TCACAGATTGGTTCTCTAATTCTCG 58.667 40.000 0.00 0.00 29.93 4.04
2816 3331 6.373005 TCCAATCACAGATTGGTTCTCTAA 57.627 37.500 28.38 12.25 46.47 2.10
2834 3351 5.672194 ACCACTATCCTTCTAACCATCCAAT 59.328 40.000 0.00 0.00 0.00 3.16
2874 3391 2.874014 TGGCAACATGAGGTTTGATCA 58.126 42.857 0.00 0.00 46.17 2.92
2887 3404 7.882791 TCTTTATAAGAGATCAAAGTGGCAACA 59.117 33.333 0.00 0.00 37.33 3.33
2902 3419 6.148480 CGCCTCCCAATGAATCTTTATAAGAG 59.852 42.308 0.00 0.00 41.61 2.85
2918 3435 2.214376 ATGAAAACATCGCCTCCCAA 57.786 45.000 0.00 0.00 0.00 4.12
2977 3494 5.080337 TGCCCAACTATAATTTGTTCACCA 58.920 37.500 0.00 0.00 0.00 4.17
2991 3508 4.952957 TGCAATTTAATAGCTGCCCAACTA 59.047 37.500 0.00 0.00 33.78 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.