Multiple sequence alignment - TraesCS2D01G326700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G326700 chr2D 100.000 2927 0 0 1 2927 420166971 420164045 0.000000e+00 5406.0
1 TraesCS2D01G326700 chr2D 89.078 293 25 5 2637 2927 465929552 465929839 9.980000e-95 357.0
2 TraesCS2D01G326700 chr2A 95.738 1783 47 10 462 2224 570013151 570014924 0.000000e+00 2844.0
3 TraesCS2D01G326700 chr2A 87.640 356 16 10 2270 2599 570014931 570015284 3.540000e-104 388.0
4 TraesCS2D01G326700 chr2A 89.231 260 9 1 1 260 570012549 570012789 1.020000e-79 307.0
5 TraesCS2D01G326700 chr2A 87.879 66 6 2 2033 2097 552492939 552493003 3.130000e-10 76.8
6 TraesCS2D01G326700 chr2A 87.500 56 5 2 2050 2105 179291329 179291276 2.440000e-06 63.9
7 TraesCS2D01G326700 chr2B 94.933 1796 55 14 833 2599 492616143 492614355 0.000000e+00 2780.0
8 TraesCS2D01G326700 chr2B 92.963 739 34 6 2 732 492616908 492616180 0.000000e+00 1061.0
9 TraesCS2D01G326700 chr2B 91.765 85 7 0 731 815 14834409 14834325 5.120000e-23 119.0
10 TraesCS2D01G326700 chr2B 88.000 100 8 3 717 815 677805515 677805611 6.630000e-22 115.0
11 TraesCS2D01G326700 chr2B 95.652 46 2 0 2055 2100 513283022 513282977 1.130000e-09 75.0
12 TraesCS2D01G326700 chr2B 90.566 53 4 1 2050 2102 32892707 32892656 5.230000e-08 69.4
13 TraesCS2D01G326700 chr1D 89.796 294 23 5 2633 2924 342555967 342556255 1.280000e-98 370.0
14 TraesCS2D01G326700 chr3D 87.423 326 30 4 2600 2924 292893384 292893069 5.960000e-97 364.0
15 TraesCS2D01G326700 chr7D 89.420 293 24 4 2637 2927 399136066 399135779 2.140000e-96 363.0
16 TraesCS2D01G326700 chr7D 91.860 86 6 1 731 816 41146563 41146647 5.120000e-23 119.0
17 TraesCS2D01G326700 chr6B 89.892 277 23 3 2633 2908 553076499 553076771 4.640000e-93 351.0
18 TraesCS2D01G326700 chr6A 88.699 292 27 4 2638 2927 315629962 315629675 4.640000e-93 351.0
19 TraesCS2D01G326700 chr6A 89.888 89 8 1 731 819 464514513 464514426 2.380000e-21 113.0
20 TraesCS2D01G326700 chr6A 87.129 101 7 3 715 815 537004324 537004418 3.080000e-20 110.0
21 TraesCS2D01G326700 chr5D 88.660 291 28 3 2634 2924 467767621 467767906 1.670000e-92 350.0
22 TraesCS2D01G326700 chr5D 86.364 330 32 11 2599 2924 250386228 250385908 6.000000e-92 348.0
23 TraesCS2D01G326700 chr5D 90.000 50 5 0 2050 2099 11299563 11299514 6.770000e-07 65.8
24 TraesCS2D01G326700 chr1A 85.075 335 39 10 2599 2927 292743261 292742932 6.050000e-87 331.0
25 TraesCS2D01G326700 chr1A 76.685 356 46 22 2594 2927 395762160 395761820 2.330000e-36 163.0
26 TraesCS2D01G326700 chr1A 91.765 85 7 0 731 815 33225517 33225433 5.120000e-23 119.0
27 TraesCS2D01G326700 chr4B 82.935 293 35 12 2642 2924 496238494 496238781 1.740000e-62 250.0
28 TraesCS2D01G326700 chr4B 75.630 357 47 18 2594 2924 532478426 532478768 1.090000e-29 141.0
29 TraesCS2D01G326700 chr5A 77.183 355 44 16 2594 2927 501912564 501912226 3.880000e-39 172.0
30 TraesCS2D01G326700 chr5B 93.023 86 6 0 731 816 134917768 134917853 3.060000e-25 126.0
31 TraesCS2D01G326700 chr5B 93.478 46 2 1 2050 2095 45388566 45388522 1.880000e-07 67.6
32 TraesCS2D01G326700 chr6D 89.888 89 8 1 731 819 325727795 325727708 2.380000e-21 113.0
33 TraesCS2D01G326700 chr3B 97.674 43 1 0 2050 2092 829121944 829121986 1.130000e-09 75.0
34 TraesCS2D01G326700 chr4A 93.023 43 1 1 2594 2636 220229500 220229540 8.760000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G326700 chr2D 420164045 420166971 2926 True 5406.000000 5406 100.000000 1 2927 1 chr2D.!!$R1 2926
1 TraesCS2D01G326700 chr2A 570012549 570015284 2735 False 1179.666667 2844 90.869667 1 2599 3 chr2A.!!$F2 2598
2 TraesCS2D01G326700 chr2B 492614355 492616908 2553 True 1920.500000 2780 93.948000 2 2599 2 chr2B.!!$R4 2597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 689 1.282157 ACCCTTGAAGGCACCATAGTC 59.718 52.381 5.5 0.0 32.73 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 2488 0.547712 CTCCTCCCCTCTCCACCAAA 60.548 60.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.914465 TGTAGGTTTCATTTTTCATGTTTTGC 58.086 30.769 0.00 0.00 0.00 3.68
75 77 9.667107 TTTAGCATAAACTTGTACAGCTAGAAT 57.333 29.630 9.74 0.00 34.95 2.40
129 131 8.316046 CGTACAGTACTGGTTACAATATTTTCG 58.684 37.037 26.12 7.01 32.41 3.46
264 266 6.861055 CGGTTTGTGCTTTTGAGTAAATATGT 59.139 34.615 0.00 0.00 0.00 2.29
288 290 2.502142 ATGCCAGACTGCAGATCAAA 57.498 45.000 23.35 1.21 45.93 2.69
289 291 1.817357 TGCCAGACTGCAGATCAAAG 58.183 50.000 23.35 4.81 36.04 2.77
309 345 9.991906 ATCAAAGCTGAAAATGGGATATATTTG 57.008 29.630 0.00 0.00 34.49 2.32
340 376 7.562454 TTATTCTATGCCTAAAAAGGGAACG 57.438 36.000 0.00 0.00 31.64 3.95
355 571 2.352342 GGGAACGTTTTGTTTCGTGAGA 59.648 45.455 0.46 0.00 42.09 3.27
450 666 5.070770 TGTTTTGCTGTGAAGTTGAACAT 57.929 34.783 0.00 0.00 0.00 2.71
459 675 5.063204 TGTGAAGTTGAACATCTACCCTTG 58.937 41.667 2.13 0.00 0.00 3.61
473 689 1.282157 ACCCTTGAAGGCACCATAGTC 59.718 52.381 5.50 0.00 32.73 2.59
483 699 4.796606 AGGCACCATAGTCAATGCTTATT 58.203 39.130 0.00 0.00 38.18 1.40
567 783 5.247507 TGGTTGTGACTCAGAAACAAATG 57.752 39.130 4.20 0.00 31.49 2.32
603 829 5.883673 ACTGCCGGTATTATTTGAAAGCTTA 59.116 36.000 1.90 0.00 0.00 3.09
604 830 6.546034 ACTGCCGGTATTATTTGAAAGCTTAT 59.454 34.615 1.90 0.00 0.00 1.73
605 831 7.068226 ACTGCCGGTATTATTTGAAAGCTTATT 59.932 33.333 1.90 0.00 0.00 1.40
606 832 7.777095 TGCCGGTATTATTTGAAAGCTTATTT 58.223 30.769 1.90 0.00 0.00 1.40
804 1031 6.545666 TGCAAAACGATCTTATATTGTGGGAT 59.454 34.615 0.00 0.00 0.00 3.85
808 1035 6.627087 ACGATCTTATATTGTGGGATGGAT 57.373 37.500 0.00 0.00 0.00 3.41
998 1242 4.640647 ACTTCTGGTTCACTCTTTGGTTTC 59.359 41.667 0.00 0.00 0.00 2.78
1021 1266 1.691434 GCTGAAGTCCCATCCTAGAGG 59.309 57.143 0.00 0.00 0.00 3.69
1126 1371 5.395768 CCCTCTACTGGATGGTAAAGACTTG 60.396 48.000 0.00 0.00 0.00 3.16
1267 1512 8.691797 ACAAACTTCCAAAAGCTCTATTTAACA 58.308 29.630 0.00 0.00 35.81 2.41
1291 1536 0.320374 CCAAGCCACGGAAGACAGTA 59.680 55.000 0.00 0.00 0.00 2.74
1938 2184 4.460731 TGTTGGAATAAAATGGCGATGTGA 59.539 37.500 0.00 0.00 0.00 3.58
1947 2193 4.223800 GCGATGTGAGCCCATTGA 57.776 55.556 0.00 0.00 0.00 2.57
1975 2221 8.827177 TTCTATACCGTTCATGATTTGGTATC 57.173 34.615 25.43 0.00 43.11 2.24
1993 2239 2.760634 TCGACTGATTTAGCCAGCAA 57.239 45.000 0.00 0.00 35.14 3.91
2104 2350 7.823635 TCGGAGGGAGTATATTATATTAGCCT 58.176 38.462 0.00 0.00 0.00 4.58
2149 2396 6.957150 TGTTCATTGGTGCATTCAAATTTTC 58.043 32.000 9.04 2.37 0.00 2.29
2150 2397 5.842619 TCATTGGTGCATTCAAATTTTCG 57.157 34.783 9.04 0.00 0.00 3.46
2151 2398 4.152045 TCATTGGTGCATTCAAATTTTCGC 59.848 37.500 9.04 0.00 0.00 4.70
2334 2592 4.622701 GAGTTGCACTCTTCAAAACACT 57.377 40.909 8.50 0.00 41.88 3.55
2335 2593 4.592179 GAGTTGCACTCTTCAAAACACTC 58.408 43.478 8.50 1.02 41.88 3.51
2362 2632 0.396435 ATTTGGGAGTGTGCGAGACA 59.604 50.000 0.00 0.00 0.00 3.41
2397 2667 2.906389 AGAGTCACAATGTCTTGGCCTA 59.094 45.455 3.32 0.00 36.64 3.93
2405 2675 4.021192 ACAATGTCTTGGCCTACAAAATGG 60.021 41.667 3.32 0.00 38.91 3.16
2407 2677 3.153919 TGTCTTGGCCTACAAAATGGTC 58.846 45.455 3.32 0.00 38.91 4.02
2416 2686 5.243954 GGCCTACAAAATGGTCTTTTCTCTT 59.756 40.000 0.00 0.00 0.00 2.85
2544 2820 7.754475 GCACATTCAACATGTACAAATCACATA 59.246 33.333 0.00 0.00 34.88 2.29
2547 2823 9.454585 CATTCAACATGTACAAATCACATATCC 57.545 33.333 0.00 0.00 34.88 2.59
2559 2835 0.826672 ACATATCCCCGACGACTCCC 60.827 60.000 0.00 0.00 0.00 4.30
2599 2876 1.502690 TCCCCGGTATGTGCATAGTT 58.497 50.000 0.00 0.00 0.00 2.24
2600 2877 1.140052 TCCCCGGTATGTGCATAGTTG 59.860 52.381 0.00 0.00 0.00 3.16
2601 2878 1.134220 CCCCGGTATGTGCATAGTTGT 60.134 52.381 0.00 0.00 0.00 3.32
2602 2879 2.103432 CCCCGGTATGTGCATAGTTGTA 59.897 50.000 0.00 0.00 0.00 2.41
2603 2880 3.390135 CCCGGTATGTGCATAGTTGTAG 58.610 50.000 0.00 0.00 0.00 2.74
2604 2881 3.390135 CCGGTATGTGCATAGTTGTAGG 58.610 50.000 0.00 0.00 0.00 3.18
2605 2882 3.069016 CCGGTATGTGCATAGTTGTAGGA 59.931 47.826 0.00 0.00 0.00 2.94
2606 2883 4.262463 CCGGTATGTGCATAGTTGTAGGAT 60.262 45.833 0.00 0.00 0.00 3.24
2607 2884 4.923871 CGGTATGTGCATAGTTGTAGGATC 59.076 45.833 0.00 0.00 0.00 3.36
2608 2885 4.923871 GGTATGTGCATAGTTGTAGGATCG 59.076 45.833 0.00 0.00 0.00 3.69
2609 2886 4.937201 ATGTGCATAGTTGTAGGATCGA 57.063 40.909 0.00 0.00 0.00 3.59
2610 2887 4.729227 TGTGCATAGTTGTAGGATCGAA 57.271 40.909 0.00 0.00 0.00 3.71
2611 2888 5.079689 TGTGCATAGTTGTAGGATCGAAA 57.920 39.130 0.00 0.00 0.00 3.46
2612 2889 5.109210 TGTGCATAGTTGTAGGATCGAAAG 58.891 41.667 0.00 0.00 0.00 2.62
2613 2890 5.109903 GTGCATAGTTGTAGGATCGAAAGT 58.890 41.667 0.00 0.00 0.00 2.66
2614 2891 6.127563 TGTGCATAGTTGTAGGATCGAAAGTA 60.128 38.462 0.00 0.00 0.00 2.24
2615 2892 6.924060 GTGCATAGTTGTAGGATCGAAAGTAT 59.076 38.462 0.00 0.00 0.00 2.12
2616 2893 6.923508 TGCATAGTTGTAGGATCGAAAGTATG 59.076 38.462 12.64 12.64 38.27 2.39
2617 2894 6.924060 GCATAGTTGTAGGATCGAAAGTATGT 59.076 38.462 16.06 0.00 37.85 2.29
2618 2895 7.115095 GCATAGTTGTAGGATCGAAAGTATGTC 59.885 40.741 16.06 8.86 37.85 3.06
2619 2896 6.777213 AGTTGTAGGATCGAAAGTATGTCT 57.223 37.500 0.00 0.00 0.00 3.41
2620 2897 7.876936 AGTTGTAGGATCGAAAGTATGTCTA 57.123 36.000 0.00 0.00 0.00 2.59
2621 2898 8.289939 AGTTGTAGGATCGAAAGTATGTCTAA 57.710 34.615 0.00 0.00 0.00 2.10
2622 2899 8.746530 AGTTGTAGGATCGAAAGTATGTCTAAA 58.253 33.333 0.00 0.00 0.00 1.85
2623 2900 9.021863 GTTGTAGGATCGAAAGTATGTCTAAAG 57.978 37.037 0.00 0.00 0.00 1.85
2624 2901 7.713750 TGTAGGATCGAAAGTATGTCTAAAGG 58.286 38.462 0.00 0.00 0.00 3.11
2625 2902 6.163135 AGGATCGAAAGTATGTCTAAAGGG 57.837 41.667 0.00 0.00 0.00 3.95
2626 2903 5.070580 AGGATCGAAAGTATGTCTAAAGGGG 59.929 44.000 0.00 0.00 0.00 4.79
2627 2904 4.748277 TCGAAAGTATGTCTAAAGGGGG 57.252 45.455 0.00 0.00 0.00 5.40
2628 2905 4.098894 TCGAAAGTATGTCTAAAGGGGGT 58.901 43.478 0.00 0.00 0.00 4.95
2629 2906 4.533311 TCGAAAGTATGTCTAAAGGGGGTT 59.467 41.667 0.00 0.00 0.00 4.11
2630 2907 4.634443 CGAAAGTATGTCTAAAGGGGGTTG 59.366 45.833 0.00 0.00 0.00 3.77
2631 2908 4.586306 AAGTATGTCTAAAGGGGGTTGG 57.414 45.455 0.00 0.00 0.00 3.77
2632 2909 2.850568 AGTATGTCTAAAGGGGGTTGGG 59.149 50.000 0.00 0.00 0.00 4.12
2633 2910 1.007607 ATGTCTAAAGGGGGTTGGGG 58.992 55.000 0.00 0.00 0.00 4.96
2634 2911 1.143970 TGTCTAAAGGGGGTTGGGGG 61.144 60.000 0.00 0.00 0.00 5.40
2656 2933 4.138487 GGGGGTGTGATTAGACTACTTG 57.862 50.000 0.00 0.00 0.00 3.16
2657 2934 3.773119 GGGGGTGTGATTAGACTACTTGA 59.227 47.826 0.00 0.00 0.00 3.02
2658 2935 4.382793 GGGGGTGTGATTAGACTACTTGAC 60.383 50.000 0.00 0.00 0.00 3.18
2659 2936 4.382793 GGGGTGTGATTAGACTACTTGACC 60.383 50.000 0.00 0.00 0.00 4.02
2660 2937 4.222145 GGGTGTGATTAGACTACTTGACCA 59.778 45.833 0.00 0.00 0.00 4.02
2661 2938 5.279809 GGGTGTGATTAGACTACTTGACCAA 60.280 44.000 0.00 0.00 0.00 3.67
2662 2939 6.228258 GGTGTGATTAGACTACTTGACCAAA 58.772 40.000 0.00 0.00 0.00 3.28
2663 2940 6.879458 GGTGTGATTAGACTACTTGACCAAAT 59.121 38.462 0.00 0.00 0.00 2.32
2664 2941 8.038944 GGTGTGATTAGACTACTTGACCAAATA 58.961 37.037 0.00 0.00 0.00 1.40
2665 2942 9.431887 GTGTGATTAGACTACTTGACCAAATAA 57.568 33.333 0.00 0.00 0.00 1.40
2666 2943 9.653287 TGTGATTAGACTACTTGACCAAATAAG 57.347 33.333 0.00 0.00 0.00 1.73
2667 2944 9.871238 GTGATTAGACTACTTGACCAAATAAGA 57.129 33.333 0.00 0.00 0.00 2.10
2668 2945 9.871238 TGATTAGACTACTTGACCAAATAAGAC 57.129 33.333 0.00 0.00 0.00 3.01
2669 2946 9.871238 GATTAGACTACTTGACCAAATAAGACA 57.129 33.333 0.00 0.00 0.00 3.41
2673 2950 9.654663 AGACTACTTGACCAAATAAGACATAAC 57.345 33.333 0.00 0.00 0.00 1.89
2674 2951 9.431887 GACTACTTGACCAAATAAGACATAACA 57.568 33.333 0.00 0.00 0.00 2.41
2675 2952 9.959721 ACTACTTGACCAAATAAGACATAACAT 57.040 29.630 0.00 0.00 0.00 2.71
2720 2997 7.517614 TGGACAAATTTTAGCAACTATGACA 57.482 32.000 0.00 0.00 0.00 3.58
2721 2998 7.946207 TGGACAAATTTTAGCAACTATGACAA 58.054 30.769 0.00 0.00 0.00 3.18
2722 2999 8.081633 TGGACAAATTTTAGCAACTATGACAAG 58.918 33.333 0.00 0.00 0.00 3.16
2723 3000 8.082242 GGACAAATTTTAGCAACTATGACAAGT 58.918 33.333 0.00 0.00 0.00 3.16
2724 3001 9.118236 GACAAATTTTAGCAACTATGACAAGTC 57.882 33.333 0.00 0.00 0.00 3.01
2725 3002 8.629158 ACAAATTTTAGCAACTATGACAAGTCA 58.371 29.630 5.24 5.24 44.59 3.41
2726 3003 9.462174 CAAATTTTAGCAACTATGACAAGTCAA 57.538 29.630 7.02 0.00 43.58 3.18
2727 3004 9.683069 AAATTTTAGCAACTATGACAAGTCAAG 57.317 29.630 7.02 8.49 43.58 3.02
2728 3005 5.862924 TTAGCAACTATGACAAGTCAAGC 57.137 39.130 7.02 6.86 43.58 4.01
2729 3006 3.743521 AGCAACTATGACAAGTCAAGCA 58.256 40.909 7.02 0.00 43.58 3.91
2730 3007 4.136796 AGCAACTATGACAAGTCAAGCAA 58.863 39.130 7.02 0.00 43.58 3.91
2731 3008 4.023707 AGCAACTATGACAAGTCAAGCAAC 60.024 41.667 7.02 0.00 43.58 4.17
2732 3009 4.261155 GCAACTATGACAAGTCAAGCAACA 60.261 41.667 7.02 0.00 43.58 3.33
2733 3010 5.207768 CAACTATGACAAGTCAAGCAACAC 58.792 41.667 7.02 0.00 43.58 3.32
2734 3011 3.815401 ACTATGACAAGTCAAGCAACACC 59.185 43.478 7.02 0.00 43.58 4.16
2735 3012 1.388547 TGACAAGTCAAGCAACACCC 58.611 50.000 0.00 0.00 36.53 4.61
2736 3013 1.064758 TGACAAGTCAAGCAACACCCT 60.065 47.619 0.00 0.00 36.53 4.34
2737 3014 2.171659 TGACAAGTCAAGCAACACCCTA 59.828 45.455 0.00 0.00 36.53 3.53
2738 3015 2.548480 GACAAGTCAAGCAACACCCTAC 59.452 50.000 0.00 0.00 0.00 3.18
2739 3016 2.092646 ACAAGTCAAGCAACACCCTACA 60.093 45.455 0.00 0.00 0.00 2.74
2740 3017 2.256117 AGTCAAGCAACACCCTACAC 57.744 50.000 0.00 0.00 0.00 2.90
2741 3018 1.488812 AGTCAAGCAACACCCTACACA 59.511 47.619 0.00 0.00 0.00 3.72
2742 3019 2.106511 AGTCAAGCAACACCCTACACAT 59.893 45.455 0.00 0.00 0.00 3.21
2743 3020 2.226437 GTCAAGCAACACCCTACACATG 59.774 50.000 0.00 0.00 0.00 3.21
2744 3021 1.068333 CAAGCAACACCCTACACATGC 60.068 52.381 0.00 0.00 0.00 4.06
2745 3022 0.110295 AGCAACACCCTACACATGCA 59.890 50.000 0.00 0.00 36.30 3.96
2746 3023 0.958091 GCAACACCCTACACATGCAA 59.042 50.000 0.00 0.00 34.10 4.08
2747 3024 1.545582 GCAACACCCTACACATGCAAT 59.454 47.619 0.00 0.00 34.10 3.56
2748 3025 2.029110 GCAACACCCTACACATGCAATT 60.029 45.455 0.00 0.00 34.10 2.32
2749 3026 3.836949 CAACACCCTACACATGCAATTC 58.163 45.455 0.00 0.00 0.00 2.17
2750 3027 3.439857 ACACCCTACACATGCAATTCT 57.560 42.857 0.00 0.00 0.00 2.40
2751 3028 4.568072 ACACCCTACACATGCAATTCTA 57.432 40.909 0.00 0.00 0.00 2.10
2752 3029 4.917385 ACACCCTACACATGCAATTCTAA 58.083 39.130 0.00 0.00 0.00 2.10
2753 3030 4.943705 ACACCCTACACATGCAATTCTAAG 59.056 41.667 0.00 0.00 0.00 2.18
2754 3031 5.185454 CACCCTACACATGCAATTCTAAGA 58.815 41.667 0.00 0.00 0.00 2.10
2755 3032 5.295292 CACCCTACACATGCAATTCTAAGAG 59.705 44.000 0.00 0.00 0.00 2.85
2756 3033 5.045578 ACCCTACACATGCAATTCTAAGAGT 60.046 40.000 0.00 0.00 0.00 3.24
2757 3034 6.156256 ACCCTACACATGCAATTCTAAGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
2758 3035 7.147479 ACCCTACACATGCAATTCTAAGAGTAT 60.147 37.037 0.00 0.00 0.00 2.12
2759 3036 8.367911 CCCTACACATGCAATTCTAAGAGTATA 58.632 37.037 0.00 0.00 0.00 1.47
2760 3037 9.416794 CCTACACATGCAATTCTAAGAGTATAG 57.583 37.037 0.00 0.00 0.00 1.31
2761 3038 7.721286 ACACATGCAATTCTAAGAGTATAGC 57.279 36.000 0.00 0.00 0.00 2.97
2762 3039 7.275183 ACACATGCAATTCTAAGAGTATAGCA 58.725 34.615 0.00 0.00 0.00 3.49
2763 3040 7.440556 ACACATGCAATTCTAAGAGTATAGCAG 59.559 37.037 0.00 0.00 32.59 4.24
2764 3041 6.426328 ACATGCAATTCTAAGAGTATAGCAGC 59.574 38.462 0.00 0.00 32.59 5.25
2765 3042 4.984785 TGCAATTCTAAGAGTATAGCAGCG 59.015 41.667 0.00 0.00 0.00 5.18
2766 3043 4.387256 GCAATTCTAAGAGTATAGCAGCGG 59.613 45.833 0.00 0.00 0.00 5.52
2767 3044 5.773575 CAATTCTAAGAGTATAGCAGCGGA 58.226 41.667 0.00 0.00 0.00 5.54
2768 3045 6.216569 CAATTCTAAGAGTATAGCAGCGGAA 58.783 40.000 0.00 0.00 0.00 4.30
2769 3046 5.847111 TTCTAAGAGTATAGCAGCGGAAA 57.153 39.130 0.00 0.00 0.00 3.13
2770 3047 5.440234 TCTAAGAGTATAGCAGCGGAAAG 57.560 43.478 0.00 0.00 0.00 2.62
2771 3048 4.888239 TCTAAGAGTATAGCAGCGGAAAGT 59.112 41.667 0.00 0.00 0.00 2.66
2772 3049 6.060136 TCTAAGAGTATAGCAGCGGAAAGTA 58.940 40.000 0.00 0.00 0.00 2.24
2773 3050 5.593679 AAGAGTATAGCAGCGGAAAGTAA 57.406 39.130 0.00 0.00 0.00 2.24
2774 3051 5.189659 AGAGTATAGCAGCGGAAAGTAAG 57.810 43.478 0.00 0.00 0.00 2.34
2775 3052 4.888239 AGAGTATAGCAGCGGAAAGTAAGA 59.112 41.667 0.00 0.00 0.00 2.10
2776 3053 4.934515 AGTATAGCAGCGGAAAGTAAGAC 58.065 43.478 0.00 0.00 0.00 3.01
2777 3054 3.887621 ATAGCAGCGGAAAGTAAGACA 57.112 42.857 0.00 0.00 0.00 3.41
2778 3055 1.797025 AGCAGCGGAAAGTAAGACAC 58.203 50.000 0.00 0.00 0.00 3.67
2779 3056 1.344763 AGCAGCGGAAAGTAAGACACT 59.655 47.619 0.00 0.00 40.05 3.55
2780 3057 1.461127 GCAGCGGAAAGTAAGACACTG 59.539 52.381 0.00 0.00 37.63 3.66
2781 3058 1.461127 CAGCGGAAAGTAAGACACTGC 59.539 52.381 0.00 0.00 37.63 4.40
2782 3059 1.070134 AGCGGAAAGTAAGACACTGCA 59.930 47.619 0.00 0.00 37.63 4.41
2783 3060 1.194772 GCGGAAAGTAAGACACTGCAC 59.805 52.381 0.00 0.00 37.63 4.57
2784 3061 2.479837 CGGAAAGTAAGACACTGCACA 58.520 47.619 0.00 0.00 37.63 4.57
2785 3062 3.067106 CGGAAAGTAAGACACTGCACAT 58.933 45.455 0.00 0.00 37.63 3.21
2786 3063 3.120546 CGGAAAGTAAGACACTGCACATG 60.121 47.826 0.00 0.00 37.63 3.21
2787 3064 3.815401 GGAAAGTAAGACACTGCACATGT 59.185 43.478 0.00 0.00 37.63 3.21
2788 3065 4.994852 GGAAAGTAAGACACTGCACATGTA 59.005 41.667 0.00 0.00 37.63 2.29
2789 3066 5.468746 GGAAAGTAAGACACTGCACATGTAA 59.531 40.000 0.00 0.00 37.63 2.41
2790 3067 6.347725 GGAAAGTAAGACACTGCACATGTAAG 60.348 42.308 0.00 1.71 37.63 2.34
2791 3068 5.215252 AGTAAGACACTGCACATGTAAGT 57.785 39.130 0.00 2.44 35.62 2.24
2792 3069 6.340962 AGTAAGACACTGCACATGTAAGTA 57.659 37.500 11.84 0.00 35.62 2.24
2793 3070 6.755206 AGTAAGACACTGCACATGTAAGTAA 58.245 36.000 11.84 0.00 35.62 2.24
2794 3071 7.214381 AGTAAGACACTGCACATGTAAGTAAA 58.786 34.615 11.84 0.00 35.62 2.01
2795 3072 6.545504 AAGACACTGCACATGTAAGTAAAG 57.454 37.500 11.84 4.70 0.00 1.85
2796 3073 5.853936 AGACACTGCACATGTAAGTAAAGA 58.146 37.500 11.84 0.00 0.00 2.52
2797 3074 6.288294 AGACACTGCACATGTAAGTAAAGAA 58.712 36.000 11.84 0.00 0.00 2.52
2798 3075 6.765989 AGACACTGCACATGTAAGTAAAGAAA 59.234 34.615 11.84 0.00 0.00 2.52
2799 3076 6.959361 ACACTGCACATGTAAGTAAAGAAAG 58.041 36.000 11.84 3.00 0.00 2.62
2800 3077 6.017109 ACACTGCACATGTAAGTAAAGAAAGG 60.017 38.462 11.84 2.43 0.00 3.11
2801 3078 5.473504 ACTGCACATGTAAGTAAAGAAAGGG 59.526 40.000 10.79 0.00 0.00 3.95
2802 3079 5.381757 TGCACATGTAAGTAAAGAAAGGGT 58.618 37.500 0.00 0.00 0.00 4.34
2803 3080 5.830991 TGCACATGTAAGTAAAGAAAGGGTT 59.169 36.000 0.00 0.00 0.00 4.11
2804 3081 6.322712 TGCACATGTAAGTAAAGAAAGGGTTT 59.677 34.615 0.00 0.00 0.00 3.27
2805 3082 6.640907 GCACATGTAAGTAAAGAAAGGGTTTG 59.359 38.462 0.00 0.00 0.00 2.93
2806 3083 7.145323 CACATGTAAGTAAAGAAAGGGTTTGG 58.855 38.462 0.00 0.00 0.00 3.28
2807 3084 7.013846 CACATGTAAGTAAAGAAAGGGTTTGGA 59.986 37.037 0.00 0.00 0.00 3.53
2808 3085 7.230712 ACATGTAAGTAAAGAAAGGGTTTGGAG 59.769 37.037 0.00 0.00 0.00 3.86
2809 3086 6.902408 TGTAAGTAAAGAAAGGGTTTGGAGA 58.098 36.000 0.00 0.00 0.00 3.71
2810 3087 7.348033 TGTAAGTAAAGAAAGGGTTTGGAGAA 58.652 34.615 0.00 0.00 0.00 2.87
2811 3088 6.961360 AAGTAAAGAAAGGGTTTGGAGAAG 57.039 37.500 0.00 0.00 0.00 2.85
2812 3089 5.386060 AGTAAAGAAAGGGTTTGGAGAAGG 58.614 41.667 0.00 0.00 0.00 3.46
2813 3090 2.294449 AGAAAGGGTTTGGAGAAGGC 57.706 50.000 0.00 0.00 0.00 4.35
2814 3091 1.499007 AGAAAGGGTTTGGAGAAGGCA 59.501 47.619 0.00 0.00 0.00 4.75
2815 3092 2.091333 AGAAAGGGTTTGGAGAAGGCAA 60.091 45.455 0.00 0.00 0.00 4.52
2816 3093 2.470057 AAGGGTTTGGAGAAGGCAAA 57.530 45.000 0.00 0.00 0.00 3.68
2817 3094 1.704641 AGGGTTTGGAGAAGGCAAAC 58.295 50.000 0.00 0.00 37.89 2.93
2818 3095 0.313987 GGGTTTGGAGAAGGCAAACG 59.686 55.000 0.00 0.00 39.07 3.60
2819 3096 0.318699 GGTTTGGAGAAGGCAAACGC 60.319 55.000 0.00 0.00 39.07 4.84
2820 3097 0.383949 GTTTGGAGAAGGCAAACGCA 59.616 50.000 0.00 0.00 0.00 5.24
2821 3098 1.107114 TTTGGAGAAGGCAAACGCAA 58.893 45.000 0.00 0.00 0.00 4.85
2822 3099 0.383949 TTGGAGAAGGCAAACGCAAC 59.616 50.000 0.00 0.00 0.00 4.17
2823 3100 1.082104 GGAGAAGGCAAACGCAACG 60.082 57.895 0.00 0.00 0.00 4.10
2824 3101 1.082104 GAGAAGGCAAACGCAACGG 60.082 57.895 0.00 0.00 0.00 4.44
2825 3102 2.050442 GAAGGCAAACGCAACGGG 60.050 61.111 0.00 0.00 0.00 5.28
2826 3103 3.551887 GAAGGCAAACGCAACGGGG 62.552 63.158 0.00 0.00 0.00 5.73
2827 3104 4.572571 AGGCAAACGCAACGGGGA 62.573 61.111 0.00 0.00 0.00 4.81
2828 3105 4.337060 GGCAAACGCAACGGGGAC 62.337 66.667 0.00 0.00 0.00 4.46
2829 3106 3.587933 GCAAACGCAACGGGGACA 61.588 61.111 0.00 0.00 0.00 4.02
2830 3107 2.330041 CAAACGCAACGGGGACAC 59.670 61.111 0.00 0.00 0.00 3.67
2831 3108 3.273834 AAACGCAACGGGGACACG 61.274 61.111 0.00 0.00 40.31 4.49
2832 3109 3.736732 AAACGCAACGGGGACACGA 62.737 57.895 0.00 0.00 37.61 4.35
2833 3110 3.736732 AACGCAACGGGGACACGAA 62.737 57.895 0.00 0.00 37.61 3.85
2834 3111 3.411351 CGCAACGGGGACACGAAG 61.411 66.667 0.00 0.00 37.61 3.79
2835 3112 2.029964 GCAACGGGGACACGAAGA 59.970 61.111 0.00 0.00 37.61 2.87
2836 3113 1.375523 GCAACGGGGACACGAAGAT 60.376 57.895 0.00 0.00 37.61 2.40
2837 3114 0.953960 GCAACGGGGACACGAAGATT 60.954 55.000 0.00 0.00 37.61 2.40
2838 3115 1.519408 CAACGGGGACACGAAGATTT 58.481 50.000 0.00 0.00 37.61 2.17
2839 3116 1.877443 CAACGGGGACACGAAGATTTT 59.123 47.619 0.00 0.00 37.61 1.82
2840 3117 2.265589 ACGGGGACACGAAGATTTTT 57.734 45.000 0.00 0.00 37.61 1.94
2841 3118 1.877443 ACGGGGACACGAAGATTTTTG 59.123 47.619 0.00 0.00 37.61 2.44
2842 3119 1.199097 CGGGGACACGAAGATTTTTGG 59.801 52.381 0.00 0.00 35.47 3.28
2843 3120 1.067846 GGGGACACGAAGATTTTTGGC 60.068 52.381 0.00 0.00 0.00 4.52
2844 3121 1.401018 GGGACACGAAGATTTTTGGCG 60.401 52.381 0.00 0.00 0.00 5.69
2845 3122 1.265905 GGACACGAAGATTTTTGGCGT 59.734 47.619 0.00 0.00 35.33 5.68
2847 3124 1.685302 CACGAAGATTTTTGGCGTGG 58.315 50.000 0.00 0.00 45.92 4.94
2848 3125 1.001815 CACGAAGATTTTTGGCGTGGT 60.002 47.619 0.00 0.00 45.92 4.16
2849 3126 1.679153 ACGAAGATTTTTGGCGTGGTT 59.321 42.857 0.00 0.00 33.52 3.67
2850 3127 2.287368 ACGAAGATTTTTGGCGTGGTTC 60.287 45.455 0.00 0.00 33.52 3.62
2851 3128 2.672714 GAAGATTTTTGGCGTGGTTCC 58.327 47.619 0.00 0.00 0.00 3.62
2852 3129 0.596082 AGATTTTTGGCGTGGTTCCG 59.404 50.000 0.00 0.00 0.00 4.30
2853 3130 0.594110 GATTTTTGGCGTGGTTCCGA 59.406 50.000 0.00 0.00 0.00 4.55
2854 3131 1.201414 GATTTTTGGCGTGGTTCCGAT 59.799 47.619 0.00 0.00 0.00 4.18
2855 3132 1.893544 TTTTTGGCGTGGTTCCGATA 58.106 45.000 0.00 0.00 0.00 2.92
2856 3133 1.893544 TTTTGGCGTGGTTCCGATAA 58.106 45.000 0.00 0.00 0.00 1.75
2857 3134 1.444836 TTTGGCGTGGTTCCGATAAG 58.555 50.000 0.00 0.00 0.00 1.73
2858 3135 0.322322 TTGGCGTGGTTCCGATAAGT 59.678 50.000 0.00 0.00 0.00 2.24
2859 3136 0.390603 TGGCGTGGTTCCGATAAGTG 60.391 55.000 0.00 0.00 0.00 3.16
2860 3137 1.087771 GGCGTGGTTCCGATAAGTGG 61.088 60.000 0.00 0.00 0.00 4.00
2861 3138 0.390735 GCGTGGTTCCGATAAGTGGT 60.391 55.000 0.00 0.00 0.00 4.16
2862 3139 1.355971 CGTGGTTCCGATAAGTGGTG 58.644 55.000 0.00 0.00 0.00 4.17
2863 3140 1.084289 GTGGTTCCGATAAGTGGTGC 58.916 55.000 0.00 0.00 0.00 5.01
2864 3141 0.981183 TGGTTCCGATAAGTGGTGCT 59.019 50.000 0.00 0.00 0.00 4.40
2865 3142 2.093869 GTGGTTCCGATAAGTGGTGCTA 60.094 50.000 0.00 0.00 0.00 3.49
2866 3143 2.769663 TGGTTCCGATAAGTGGTGCTAT 59.230 45.455 0.00 0.00 0.00 2.97
2867 3144 3.181469 TGGTTCCGATAAGTGGTGCTATC 60.181 47.826 0.00 0.00 0.00 2.08
2868 3145 3.181469 GGTTCCGATAAGTGGTGCTATCA 60.181 47.826 0.00 0.00 0.00 2.15
2869 3146 4.503296 GGTTCCGATAAGTGGTGCTATCAT 60.503 45.833 0.00 0.00 0.00 2.45
2870 3147 5.279306 GGTTCCGATAAGTGGTGCTATCATA 60.279 44.000 0.00 0.00 0.00 2.15
2871 3148 5.386958 TCCGATAAGTGGTGCTATCATAC 57.613 43.478 0.00 0.00 0.00 2.39
2872 3149 4.830600 TCCGATAAGTGGTGCTATCATACA 59.169 41.667 0.00 0.00 0.00 2.29
2873 3150 5.480422 TCCGATAAGTGGTGCTATCATACAT 59.520 40.000 0.00 0.00 0.00 2.29
2874 3151 5.807520 CCGATAAGTGGTGCTATCATACATC 59.192 44.000 0.00 0.00 0.00 3.06
2875 3152 5.807520 CGATAAGTGGTGCTATCATACATCC 59.192 44.000 0.00 0.00 0.00 3.51
2876 3153 6.572314 CGATAAGTGGTGCTATCATACATCCA 60.572 42.308 0.00 0.00 0.00 3.41
2877 3154 4.613925 AGTGGTGCTATCATACATCCAG 57.386 45.455 0.00 0.00 0.00 3.86
2878 3155 3.969976 AGTGGTGCTATCATACATCCAGT 59.030 43.478 0.00 0.00 0.00 4.00
2879 3156 4.410228 AGTGGTGCTATCATACATCCAGTT 59.590 41.667 0.00 0.00 0.00 3.16
2880 3157 4.512944 GTGGTGCTATCATACATCCAGTTG 59.487 45.833 0.00 0.00 0.00 3.16
2881 3158 4.408596 TGGTGCTATCATACATCCAGTTGA 59.591 41.667 0.00 0.00 0.00 3.18
2882 3159 5.072193 TGGTGCTATCATACATCCAGTTGAT 59.928 40.000 0.00 0.00 34.56 2.57
2898 3175 2.859165 TGATGGAGACTTCAACCCAC 57.141 50.000 0.00 0.00 41.09 4.61
2899 3176 2.054021 TGATGGAGACTTCAACCCACA 58.946 47.619 0.00 0.00 41.09 4.17
2900 3177 2.441375 TGATGGAGACTTCAACCCACAA 59.559 45.455 0.00 0.00 41.09 3.33
2901 3178 3.117701 TGATGGAGACTTCAACCCACAAA 60.118 43.478 0.00 0.00 41.09 2.83
2902 3179 2.930950 TGGAGACTTCAACCCACAAAG 58.069 47.619 0.00 0.00 0.00 2.77
2903 3180 2.230660 GGAGACTTCAACCCACAAAGG 58.769 52.381 0.00 0.00 37.03 3.11
2914 3191 0.598065 CCACAAAGGGTAACAGCTGC 59.402 55.000 15.27 0.00 39.74 5.25
2915 3192 0.238289 CACAAAGGGTAACAGCTGCG 59.762 55.000 15.27 0.00 39.74 5.18
2916 3193 0.179029 ACAAAGGGTAACAGCTGCGT 60.179 50.000 15.27 4.45 39.74 5.24
2917 3194 0.238289 CAAAGGGTAACAGCTGCGTG 59.762 55.000 15.27 0.00 39.74 5.34
2918 3195 0.107831 AAAGGGTAACAGCTGCGTGA 59.892 50.000 15.27 0.00 39.74 4.35
2919 3196 0.320771 AAGGGTAACAGCTGCGTGAG 60.321 55.000 15.27 0.00 39.74 3.51
2920 3197 1.004918 GGGTAACAGCTGCGTGAGT 60.005 57.895 15.27 0.00 39.74 3.41
2921 3198 1.014564 GGGTAACAGCTGCGTGAGTC 61.015 60.000 15.27 0.00 39.74 3.36
2922 3199 1.014564 GGTAACAGCTGCGTGAGTCC 61.015 60.000 15.27 3.37 0.00 3.85
2923 3200 0.319555 GTAACAGCTGCGTGAGTCCA 60.320 55.000 15.27 0.00 0.00 4.02
2924 3201 0.608130 TAACAGCTGCGTGAGTCCAT 59.392 50.000 15.27 0.00 0.00 3.41
2925 3202 0.952497 AACAGCTGCGTGAGTCCATG 60.952 55.000 15.27 0.00 0.00 3.66
2926 3203 2.104859 CAGCTGCGTGAGTCCATGG 61.105 63.158 4.97 4.97 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 7.682824 ACGTACTATATATACGACATGAGCAC 58.317 38.462 21.23 0.00 46.60 4.40
114 116 7.757624 TGAAAGCCAATCGAAAATATTGTAACC 59.242 33.333 0.00 0.00 33.37 2.85
201 203 7.864379 CCCAACTCTTTATTGATAATGCATCAC 59.136 37.037 0.00 0.00 43.49 3.06
264 266 3.198417 TGATCTGCAGTCTGGCATAAGAA 59.802 43.478 14.67 0.00 43.97 2.52
314 350 8.630037 CGTTCCCTTTTTAGGCATAGAATAATT 58.370 33.333 0.00 0.00 0.00 1.40
324 360 3.447944 ACAAAACGTTCCCTTTTTAGGCA 59.552 39.130 0.00 0.00 0.00 4.75
340 376 4.351192 AGCACATTCTCACGAAACAAAAC 58.649 39.130 0.00 0.00 31.91 2.43
349 565 4.024556 AGTTCAAGAAAGCACATTCTCACG 60.025 41.667 0.68 0.00 38.69 4.35
355 571 4.464008 TCTGGAGTTCAAGAAAGCACATT 58.536 39.130 0.00 0.00 0.00 2.71
366 582 2.241176 ACACCAAACCTCTGGAGTTCAA 59.759 45.455 0.00 0.00 36.99 2.69
421 637 2.363306 TCACAGCAAAACATGGTCCT 57.637 45.000 0.00 0.00 37.77 3.85
450 666 1.668826 ATGGTGCCTTCAAGGGTAGA 58.331 50.000 5.33 0.00 35.37 2.59
459 675 2.648059 AGCATTGACTATGGTGCCTTC 58.352 47.619 0.69 0.00 43.11 3.46
473 689 6.619744 TGACACAATACCACAATAAGCATTG 58.380 36.000 0.00 0.00 45.94 2.82
483 699 6.707440 AAACTGATTTGACACAATACCACA 57.293 33.333 0.00 0.00 0.00 4.17
567 783 2.981898 ACCGGCAGTAATGGAAACTAC 58.018 47.619 0.00 0.00 0.00 2.73
658 884 3.389656 TGTGATGTCTGTTGTAGTTGGGA 59.610 43.478 0.00 0.00 0.00 4.37
666 892 5.850557 TTTGGAAATGTGATGTCTGTTGT 57.149 34.783 0.00 0.00 0.00 3.32
736 963 4.022242 ACGATCTTACATTATGGGACGGAG 60.022 45.833 0.00 0.00 0.00 4.63
804 1031 5.894298 ATTGCTAGAACATACTCCATCCA 57.106 39.130 0.00 0.00 0.00 3.41
808 1035 4.653801 TGGCTATTGCTAGAACATACTCCA 59.346 41.667 0.00 0.00 39.59 3.86
916 1160 4.525912 ATTCATGCCCAGTCAAAAACTC 57.474 40.909 0.00 0.00 35.45 3.01
998 1242 3.826157 CTCTAGGATGGGACTTCAGCTAG 59.174 52.174 0.00 0.00 0.00 3.42
1021 1266 2.175715 AGGAAATGGAATGCCTCTACCC 59.824 50.000 0.00 0.00 34.31 3.69
1267 1512 0.984230 TCTTCCGTGGCTTGGAGAAT 59.016 50.000 0.00 0.00 36.72 2.40
1291 1536 2.832733 GAGCTTAGGTACAGGAAGGTGT 59.167 50.000 9.29 0.00 31.36 4.16
1393 1638 2.737252 GTTCTGTAAACCTGCTCGAAGG 59.263 50.000 1.40 1.40 43.57 3.46
1938 2184 5.048846 ACGGTATAGAAAATCAATGGGCT 57.951 39.130 0.00 0.00 0.00 5.19
1947 2193 8.519799 ACCAAATCATGAACGGTATAGAAAAT 57.480 30.769 11.27 0.00 0.00 1.82
1975 2221 1.667724 CCTTGCTGGCTAAATCAGTCG 59.332 52.381 0.00 0.00 34.89 4.18
1993 2239 2.689983 CAAAAGGCAGTCTTCAACACCT 59.310 45.455 0.00 0.00 38.09 4.00
2078 2324 8.457757 AGGCTAATATAATATACTCCCTCCGAT 58.542 37.037 0.00 0.00 0.00 4.18
2104 2350 2.440517 ATGATGGGCACACAATAGCA 57.559 45.000 0.00 0.00 0.00 3.49
2196 2445 9.508642 AAATATACTAAGCTAGAAATCCTTGCC 57.491 33.333 0.00 0.00 43.24 4.52
2233 2482 2.171003 CCCCTCTCCACCAAATTTCAC 58.829 52.381 0.00 0.00 0.00 3.18
2239 2488 0.547712 CTCCTCCCCTCTCCACCAAA 60.548 60.000 0.00 0.00 0.00 3.28
2326 2584 5.927954 CCAAATTTGATGGGAGTGTTTTG 57.072 39.130 19.86 0.00 34.15 2.44
2362 2632 7.663081 ACATTGTGACTCTGATTTTGTACATCT 59.337 33.333 0.00 0.00 0.00 2.90
2397 2667 7.702348 CGAAAAGAAGAGAAAAGACCATTTTGT 59.298 33.333 0.00 0.00 0.00 2.83
2405 2675 6.683286 GTGTGAACGAAAAGAAGAGAAAAGAC 59.317 38.462 0.00 0.00 0.00 3.01
2407 2677 6.542852 TGTGTGAACGAAAAGAAGAGAAAAG 58.457 36.000 0.00 0.00 0.00 2.27
2416 2686 5.766150 ATCCAAATGTGTGAACGAAAAGA 57.234 34.783 0.00 0.00 0.00 2.52
2502 2774 7.872163 TGAATGTGCATAATGTTTTGTCTTC 57.128 32.000 0.00 0.00 0.00 2.87
2544 2820 4.855072 GGGGGAGTCGTCGGGGAT 62.855 72.222 0.00 0.00 0.00 3.85
2547 2823 3.081409 AATGGGGGAGTCGTCGGG 61.081 66.667 0.00 0.00 0.00 5.14
2559 2835 0.609131 AGGACGGTGCAAAGAATGGG 60.609 55.000 1.61 0.00 0.00 4.00
2599 2876 7.201884 CCCTTTAGACATACTTTCGATCCTACA 60.202 40.741 0.00 0.00 0.00 2.74
2600 2877 7.146648 CCCTTTAGACATACTTTCGATCCTAC 58.853 42.308 0.00 0.00 0.00 3.18
2601 2878 6.267014 CCCCTTTAGACATACTTTCGATCCTA 59.733 42.308 0.00 0.00 0.00 2.94
2602 2879 5.070580 CCCCTTTAGACATACTTTCGATCCT 59.929 44.000 0.00 0.00 0.00 3.24
2603 2880 5.298347 CCCCTTTAGACATACTTTCGATCC 58.702 45.833 0.00 0.00 0.00 3.36
2604 2881 5.163332 ACCCCCTTTAGACATACTTTCGATC 60.163 44.000 0.00 0.00 0.00 3.69
2605 2882 4.720273 ACCCCCTTTAGACATACTTTCGAT 59.280 41.667 0.00 0.00 0.00 3.59
2606 2883 4.098894 ACCCCCTTTAGACATACTTTCGA 58.901 43.478 0.00 0.00 0.00 3.71
2607 2884 4.482952 ACCCCCTTTAGACATACTTTCG 57.517 45.455 0.00 0.00 0.00 3.46
2608 2885 4.948004 CCAACCCCCTTTAGACATACTTTC 59.052 45.833 0.00 0.00 0.00 2.62
2609 2886 4.264217 CCCAACCCCCTTTAGACATACTTT 60.264 45.833 0.00 0.00 0.00 2.66
2610 2887 3.268595 CCCAACCCCCTTTAGACATACTT 59.731 47.826 0.00 0.00 0.00 2.24
2611 2888 2.850568 CCCAACCCCCTTTAGACATACT 59.149 50.000 0.00 0.00 0.00 2.12
2612 2889 2.092049 CCCCAACCCCCTTTAGACATAC 60.092 54.545 0.00 0.00 0.00 2.39
2613 2890 2.210644 CCCCAACCCCCTTTAGACATA 58.789 52.381 0.00 0.00 0.00 2.29
2614 2891 1.007607 CCCCAACCCCCTTTAGACAT 58.992 55.000 0.00 0.00 0.00 3.06
2615 2892 1.143970 CCCCCAACCCCCTTTAGACA 61.144 60.000 0.00 0.00 0.00 3.41
2616 2893 1.695465 CCCCCAACCCCCTTTAGAC 59.305 63.158 0.00 0.00 0.00 2.59
2617 2894 4.279720 CCCCCAACCCCCTTTAGA 57.720 61.111 0.00 0.00 0.00 2.10
2635 2912 3.773119 TCAAGTAGTCTAATCACACCCCC 59.227 47.826 0.00 0.00 0.00 5.40
2636 2913 4.382793 GGTCAAGTAGTCTAATCACACCCC 60.383 50.000 0.00 0.00 0.00 4.95
2637 2914 4.222145 TGGTCAAGTAGTCTAATCACACCC 59.778 45.833 0.00 0.00 0.00 4.61
2638 2915 5.401531 TGGTCAAGTAGTCTAATCACACC 57.598 43.478 0.00 0.00 0.00 4.16
2639 2916 7.907214 ATTTGGTCAAGTAGTCTAATCACAC 57.093 36.000 0.00 0.00 0.00 3.82
2640 2917 9.653287 CTTATTTGGTCAAGTAGTCTAATCACA 57.347 33.333 0.00 0.00 0.00 3.58
2641 2918 9.871238 TCTTATTTGGTCAAGTAGTCTAATCAC 57.129 33.333 0.00 0.00 0.00 3.06
2642 2919 9.871238 GTCTTATTTGGTCAAGTAGTCTAATCA 57.129 33.333 0.00 0.00 0.00 2.57
2643 2920 9.871238 TGTCTTATTTGGTCAAGTAGTCTAATC 57.129 33.333 0.00 0.00 0.00 1.75
2647 2924 9.654663 GTTATGTCTTATTTGGTCAAGTAGTCT 57.345 33.333 0.00 0.00 0.00 3.24
2648 2925 9.431887 TGTTATGTCTTATTTGGTCAAGTAGTC 57.568 33.333 0.00 0.00 0.00 2.59
2649 2926 9.959721 ATGTTATGTCTTATTTGGTCAAGTAGT 57.040 29.630 0.00 0.00 0.00 2.73
2694 2971 9.237187 TGTCATAGTTGCTAAAATTTGTCCATA 57.763 29.630 0.00 0.00 0.00 2.74
2695 2972 8.121305 TGTCATAGTTGCTAAAATTTGTCCAT 57.879 30.769 0.00 0.00 0.00 3.41
2696 2973 7.517614 TGTCATAGTTGCTAAAATTTGTCCA 57.482 32.000 0.00 0.00 0.00 4.02
2697 2974 8.082242 ACTTGTCATAGTTGCTAAAATTTGTCC 58.918 33.333 0.00 0.00 0.00 4.02
2698 2975 9.118236 GACTTGTCATAGTTGCTAAAATTTGTC 57.882 33.333 0.00 0.00 0.00 3.18
2699 2976 8.629158 TGACTTGTCATAGTTGCTAAAATTTGT 58.371 29.630 0.00 0.00 0.00 2.83
2700 2977 9.462174 TTGACTTGTCATAGTTGCTAAAATTTG 57.538 29.630 4.18 0.00 0.00 2.32
2701 2978 9.683069 CTTGACTTGTCATAGTTGCTAAAATTT 57.317 29.630 4.18 0.00 0.00 1.82
2702 2979 7.809806 GCTTGACTTGTCATAGTTGCTAAAATT 59.190 33.333 4.18 0.00 0.00 1.82
2703 2980 7.040478 TGCTTGACTTGTCATAGTTGCTAAAAT 60.040 33.333 4.18 0.00 0.00 1.82
2704 2981 6.262049 TGCTTGACTTGTCATAGTTGCTAAAA 59.738 34.615 4.18 0.00 0.00 1.52
2705 2982 5.762711 TGCTTGACTTGTCATAGTTGCTAAA 59.237 36.000 4.18 0.00 0.00 1.85
2706 2983 5.304778 TGCTTGACTTGTCATAGTTGCTAA 58.695 37.500 4.18 0.00 0.00 3.09
2707 2984 4.893608 TGCTTGACTTGTCATAGTTGCTA 58.106 39.130 4.18 0.00 0.00 3.49
2708 2985 3.743521 TGCTTGACTTGTCATAGTTGCT 58.256 40.909 4.18 0.00 0.00 3.91
2709 2986 4.222114 GTTGCTTGACTTGTCATAGTTGC 58.778 43.478 4.18 5.58 0.00 4.17
2710 2987 5.207768 GTGTTGCTTGACTTGTCATAGTTG 58.792 41.667 4.18 0.00 0.00 3.16
2711 2988 4.275936 GGTGTTGCTTGACTTGTCATAGTT 59.724 41.667 4.18 0.00 0.00 2.24
2712 2989 3.815401 GGTGTTGCTTGACTTGTCATAGT 59.185 43.478 4.18 0.00 0.00 2.12
2713 2990 3.189287 GGGTGTTGCTTGACTTGTCATAG 59.811 47.826 4.18 6.47 0.00 2.23
2714 2991 3.146066 GGGTGTTGCTTGACTTGTCATA 58.854 45.455 4.18 0.00 0.00 2.15
2715 2992 1.956477 GGGTGTTGCTTGACTTGTCAT 59.044 47.619 4.18 0.00 0.00 3.06
2716 2993 1.064758 AGGGTGTTGCTTGACTTGTCA 60.065 47.619 0.00 0.00 0.00 3.58
2717 2994 1.680338 AGGGTGTTGCTTGACTTGTC 58.320 50.000 0.00 0.00 0.00 3.18
2718 2995 2.092646 TGTAGGGTGTTGCTTGACTTGT 60.093 45.455 0.00 0.00 0.00 3.16
2719 2996 2.290641 GTGTAGGGTGTTGCTTGACTTG 59.709 50.000 0.00 0.00 0.00 3.16
2720 2997 2.092646 TGTGTAGGGTGTTGCTTGACTT 60.093 45.455 0.00 0.00 0.00 3.01
2721 2998 1.488812 TGTGTAGGGTGTTGCTTGACT 59.511 47.619 0.00 0.00 0.00 3.41
2722 2999 1.961793 TGTGTAGGGTGTTGCTTGAC 58.038 50.000 0.00 0.00 0.00 3.18
2723 3000 2.503331 CATGTGTAGGGTGTTGCTTGA 58.497 47.619 0.00 0.00 0.00 3.02
2724 3001 1.068333 GCATGTGTAGGGTGTTGCTTG 60.068 52.381 0.00 0.00 0.00 4.01
2725 3002 1.247567 GCATGTGTAGGGTGTTGCTT 58.752 50.000 0.00 0.00 0.00 3.91
2726 3003 0.110295 TGCATGTGTAGGGTGTTGCT 59.890 50.000 0.00 0.00 0.00 3.91
2727 3004 0.958091 TTGCATGTGTAGGGTGTTGC 59.042 50.000 0.00 0.00 0.00 4.17
2728 3005 3.507233 AGAATTGCATGTGTAGGGTGTTG 59.493 43.478 0.00 0.00 0.00 3.33
2729 3006 3.766545 AGAATTGCATGTGTAGGGTGTT 58.233 40.909 0.00 0.00 0.00 3.32
2730 3007 3.439857 AGAATTGCATGTGTAGGGTGT 57.560 42.857 0.00 0.00 0.00 4.16
2731 3008 5.185454 TCTTAGAATTGCATGTGTAGGGTG 58.815 41.667 0.00 0.00 0.00 4.61
2732 3009 5.045578 ACTCTTAGAATTGCATGTGTAGGGT 60.046 40.000 0.00 0.00 0.00 4.34
2733 3010 5.431765 ACTCTTAGAATTGCATGTGTAGGG 58.568 41.667 0.00 0.00 0.00 3.53
2734 3011 9.416794 CTATACTCTTAGAATTGCATGTGTAGG 57.583 37.037 0.00 0.00 0.00 3.18
2735 3012 8.920665 GCTATACTCTTAGAATTGCATGTGTAG 58.079 37.037 0.00 0.00 0.00 2.74
2736 3013 8.421002 TGCTATACTCTTAGAATTGCATGTGTA 58.579 33.333 0.00 0.00 0.00 2.90
2737 3014 7.275183 TGCTATACTCTTAGAATTGCATGTGT 58.725 34.615 0.00 0.00 0.00 3.72
2738 3015 7.570875 GCTGCTATACTCTTAGAATTGCATGTG 60.571 40.741 4.16 0.00 32.43 3.21
2739 3016 6.426328 GCTGCTATACTCTTAGAATTGCATGT 59.574 38.462 4.16 0.00 32.43 3.21
2740 3017 6.400834 CGCTGCTATACTCTTAGAATTGCATG 60.401 42.308 4.16 0.00 32.43 4.06
2741 3018 5.636965 CGCTGCTATACTCTTAGAATTGCAT 59.363 40.000 4.16 0.00 32.43 3.96
2742 3019 4.984785 CGCTGCTATACTCTTAGAATTGCA 59.015 41.667 0.00 3.79 32.05 4.08
2743 3020 4.387256 CCGCTGCTATACTCTTAGAATTGC 59.613 45.833 0.00 0.00 0.00 3.56
2744 3021 5.773575 TCCGCTGCTATACTCTTAGAATTG 58.226 41.667 0.00 0.00 0.00 2.32
2745 3022 6.406692 TTCCGCTGCTATACTCTTAGAATT 57.593 37.500 0.00 0.00 0.00 2.17
2746 3023 6.041069 ACTTTCCGCTGCTATACTCTTAGAAT 59.959 38.462 0.00 0.00 0.00 2.40
2747 3024 5.360144 ACTTTCCGCTGCTATACTCTTAGAA 59.640 40.000 0.00 0.00 0.00 2.10
2748 3025 4.888239 ACTTTCCGCTGCTATACTCTTAGA 59.112 41.667 0.00 0.00 0.00 2.10
2749 3026 5.189659 ACTTTCCGCTGCTATACTCTTAG 57.810 43.478 0.00 0.00 0.00 2.18
2750 3027 6.544931 TCTTACTTTCCGCTGCTATACTCTTA 59.455 38.462 0.00 0.00 0.00 2.10
2751 3028 5.360144 TCTTACTTTCCGCTGCTATACTCTT 59.640 40.000 0.00 0.00 0.00 2.85
2752 3029 4.888239 TCTTACTTTCCGCTGCTATACTCT 59.112 41.667 0.00 0.00 0.00 3.24
2753 3030 4.977347 GTCTTACTTTCCGCTGCTATACTC 59.023 45.833 0.00 0.00 0.00 2.59
2754 3031 4.401519 TGTCTTACTTTCCGCTGCTATACT 59.598 41.667 0.00 0.00 0.00 2.12
2755 3032 4.503370 GTGTCTTACTTTCCGCTGCTATAC 59.497 45.833 0.00 0.00 0.00 1.47
2756 3033 4.401519 AGTGTCTTACTTTCCGCTGCTATA 59.598 41.667 0.00 0.00 35.67 1.31
2757 3034 3.195825 AGTGTCTTACTTTCCGCTGCTAT 59.804 43.478 0.00 0.00 35.67 2.97
2758 3035 2.561419 AGTGTCTTACTTTCCGCTGCTA 59.439 45.455 0.00 0.00 35.67 3.49
2759 3036 1.344763 AGTGTCTTACTTTCCGCTGCT 59.655 47.619 0.00 0.00 35.67 4.24
2760 3037 1.461127 CAGTGTCTTACTTTCCGCTGC 59.539 52.381 0.00 0.00 37.60 5.25
2761 3038 1.461127 GCAGTGTCTTACTTTCCGCTG 59.539 52.381 0.00 0.00 37.60 5.18
2762 3039 1.070134 TGCAGTGTCTTACTTTCCGCT 59.930 47.619 0.00 0.00 37.60 5.52
2763 3040 1.194772 GTGCAGTGTCTTACTTTCCGC 59.805 52.381 0.00 0.00 37.60 5.54
2764 3041 2.479837 TGTGCAGTGTCTTACTTTCCG 58.520 47.619 0.00 0.00 37.60 4.30
2765 3042 3.815401 ACATGTGCAGTGTCTTACTTTCC 59.185 43.478 0.00 0.00 37.60 3.13
2766 3043 6.202954 ACTTACATGTGCAGTGTCTTACTTTC 59.797 38.462 9.11 0.00 37.60 2.62
2767 3044 6.055588 ACTTACATGTGCAGTGTCTTACTTT 58.944 36.000 9.11 0.00 37.60 2.66
2768 3045 5.611374 ACTTACATGTGCAGTGTCTTACTT 58.389 37.500 9.11 0.00 37.60 2.24
2769 3046 5.215252 ACTTACATGTGCAGTGTCTTACT 57.785 39.130 9.11 0.00 41.36 2.24
2770 3047 7.384115 TCTTTACTTACATGTGCAGTGTCTTAC 59.616 37.037 18.32 0.00 0.00 2.34
2771 3048 7.438564 TCTTTACTTACATGTGCAGTGTCTTA 58.561 34.615 18.32 0.66 0.00 2.10
2772 3049 6.288294 TCTTTACTTACATGTGCAGTGTCTT 58.712 36.000 18.32 0.00 0.00 3.01
2773 3050 5.853936 TCTTTACTTACATGTGCAGTGTCT 58.146 37.500 18.32 0.00 0.00 3.41
2774 3051 6.539649 TTCTTTACTTACATGTGCAGTGTC 57.460 37.500 18.32 0.00 0.00 3.67
2775 3052 6.017109 CCTTTCTTTACTTACATGTGCAGTGT 60.017 38.462 18.32 9.39 0.00 3.55
2776 3053 6.373779 CCTTTCTTTACTTACATGTGCAGTG 58.626 40.000 18.32 6.26 0.00 3.66
2777 3054 5.473504 CCCTTTCTTTACTTACATGTGCAGT 59.526 40.000 9.11 12.72 0.00 4.40
2778 3055 5.473504 ACCCTTTCTTTACTTACATGTGCAG 59.526 40.000 9.11 6.97 0.00 4.41
2779 3056 5.381757 ACCCTTTCTTTACTTACATGTGCA 58.618 37.500 9.11 0.00 0.00 4.57
2780 3057 5.959618 ACCCTTTCTTTACTTACATGTGC 57.040 39.130 9.11 0.00 0.00 4.57
2781 3058 7.013846 TCCAAACCCTTTCTTTACTTACATGTG 59.986 37.037 9.11 0.00 0.00 3.21
2782 3059 7.064229 TCCAAACCCTTTCTTTACTTACATGT 58.936 34.615 2.69 2.69 0.00 3.21
2783 3060 7.447238 TCTCCAAACCCTTTCTTTACTTACATG 59.553 37.037 0.00 0.00 0.00 3.21
2784 3061 7.523415 TCTCCAAACCCTTTCTTTACTTACAT 58.477 34.615 0.00 0.00 0.00 2.29
2785 3062 6.902408 TCTCCAAACCCTTTCTTTACTTACA 58.098 36.000 0.00 0.00 0.00 2.41
2786 3063 7.040617 CCTTCTCCAAACCCTTTCTTTACTTAC 60.041 40.741 0.00 0.00 0.00 2.34
2787 3064 7.002276 CCTTCTCCAAACCCTTTCTTTACTTA 58.998 38.462 0.00 0.00 0.00 2.24
2788 3065 5.833667 CCTTCTCCAAACCCTTTCTTTACTT 59.166 40.000 0.00 0.00 0.00 2.24
2789 3066 5.386060 CCTTCTCCAAACCCTTTCTTTACT 58.614 41.667 0.00 0.00 0.00 2.24
2790 3067 4.022242 GCCTTCTCCAAACCCTTTCTTTAC 60.022 45.833 0.00 0.00 0.00 2.01
2791 3068 4.149598 GCCTTCTCCAAACCCTTTCTTTA 58.850 43.478 0.00 0.00 0.00 1.85
2792 3069 2.965831 GCCTTCTCCAAACCCTTTCTTT 59.034 45.455 0.00 0.00 0.00 2.52
2793 3070 2.091333 TGCCTTCTCCAAACCCTTTCTT 60.091 45.455 0.00 0.00 0.00 2.52
2794 3071 1.499007 TGCCTTCTCCAAACCCTTTCT 59.501 47.619 0.00 0.00 0.00 2.52
2795 3072 1.995376 TGCCTTCTCCAAACCCTTTC 58.005 50.000 0.00 0.00 0.00 2.62
2796 3073 2.434336 GTTTGCCTTCTCCAAACCCTTT 59.566 45.455 5.87 0.00 43.74 3.11
2797 3074 2.039418 GTTTGCCTTCTCCAAACCCTT 58.961 47.619 5.87 0.00 43.74 3.95
2798 3075 1.704641 GTTTGCCTTCTCCAAACCCT 58.295 50.000 5.87 0.00 43.74 4.34
2799 3076 0.313987 CGTTTGCCTTCTCCAAACCC 59.686 55.000 10.34 0.00 45.62 4.11
2800 3077 0.318699 GCGTTTGCCTTCTCCAAACC 60.319 55.000 10.34 2.13 45.62 3.27
2801 3078 0.383949 TGCGTTTGCCTTCTCCAAAC 59.616 50.000 6.87 6.87 45.19 2.93
2802 3079 1.107114 TTGCGTTTGCCTTCTCCAAA 58.893 45.000 0.00 0.00 41.78 3.28
2803 3080 0.383949 GTTGCGTTTGCCTTCTCCAA 59.616 50.000 0.00 0.00 41.78 3.53
2804 3081 1.781025 CGTTGCGTTTGCCTTCTCCA 61.781 55.000 0.00 0.00 41.78 3.86
2805 3082 1.082104 CGTTGCGTTTGCCTTCTCC 60.082 57.895 0.00 0.00 41.78 3.71
2806 3083 1.082104 CCGTTGCGTTTGCCTTCTC 60.082 57.895 0.00 0.00 41.78 2.87
2807 3084 2.551912 CCCGTTGCGTTTGCCTTCT 61.552 57.895 0.00 0.00 41.78 2.85
2808 3085 2.050442 CCCGTTGCGTTTGCCTTC 60.050 61.111 0.00 0.00 41.78 3.46
2809 3086 3.601685 CCCCGTTGCGTTTGCCTT 61.602 61.111 0.00 0.00 41.78 4.35
2810 3087 4.572571 TCCCCGTTGCGTTTGCCT 62.573 61.111 0.00 0.00 41.78 4.75
2811 3088 4.337060 GTCCCCGTTGCGTTTGCC 62.337 66.667 0.00 0.00 41.78 4.52
2812 3089 3.587933 TGTCCCCGTTGCGTTTGC 61.588 61.111 0.00 0.00 43.20 3.68
2813 3090 2.330041 GTGTCCCCGTTGCGTTTG 59.670 61.111 0.00 0.00 0.00 2.93
2814 3091 3.273834 CGTGTCCCCGTTGCGTTT 61.274 61.111 0.00 0.00 0.00 3.60
2815 3092 3.736732 TTCGTGTCCCCGTTGCGTT 62.737 57.895 0.00 0.00 0.00 4.84
2816 3093 4.224274 TTCGTGTCCCCGTTGCGT 62.224 61.111 0.00 0.00 0.00 5.24
2817 3094 3.411351 CTTCGTGTCCCCGTTGCG 61.411 66.667 0.00 0.00 0.00 4.85
2818 3095 0.953960 AATCTTCGTGTCCCCGTTGC 60.954 55.000 0.00 0.00 0.00 4.17
2819 3096 1.519408 AAATCTTCGTGTCCCCGTTG 58.481 50.000 0.00 0.00 0.00 4.10
2820 3097 2.265589 AAAATCTTCGTGTCCCCGTT 57.734 45.000 0.00 0.00 0.00 4.44
2821 3098 1.877443 CAAAAATCTTCGTGTCCCCGT 59.123 47.619 0.00 0.00 0.00 5.28
2822 3099 1.199097 CCAAAAATCTTCGTGTCCCCG 59.801 52.381 0.00 0.00 0.00 5.73
2823 3100 1.067846 GCCAAAAATCTTCGTGTCCCC 60.068 52.381 0.00 0.00 0.00 4.81
2824 3101 1.401018 CGCCAAAAATCTTCGTGTCCC 60.401 52.381 0.00 0.00 0.00 4.46
2825 3102 1.265905 ACGCCAAAAATCTTCGTGTCC 59.734 47.619 0.00 0.00 31.74 4.02
2826 3103 2.307049 CACGCCAAAAATCTTCGTGTC 58.693 47.619 5.09 0.00 43.58 3.67
2827 3104 1.001815 CCACGCCAAAAATCTTCGTGT 60.002 47.619 11.28 0.00 46.09 4.49
2828 3105 1.001815 ACCACGCCAAAAATCTTCGTG 60.002 47.619 6.15 6.15 46.79 4.35
2829 3106 1.314730 ACCACGCCAAAAATCTTCGT 58.685 45.000 0.00 0.00 0.00 3.85
2830 3107 2.315901 GAACCACGCCAAAAATCTTCG 58.684 47.619 0.00 0.00 0.00 3.79
2831 3108 2.672714 GGAACCACGCCAAAAATCTTC 58.327 47.619 0.00 0.00 0.00 2.87
2832 3109 1.000717 CGGAACCACGCCAAAAATCTT 60.001 47.619 0.00 0.00 0.00 2.40
2833 3110 0.596082 CGGAACCACGCCAAAAATCT 59.404 50.000 0.00 0.00 0.00 2.40
2834 3111 0.594110 TCGGAACCACGCCAAAAATC 59.406 50.000 0.00 0.00 0.00 2.17
2835 3112 1.253100 ATCGGAACCACGCCAAAAAT 58.747 45.000 0.00 0.00 0.00 1.82
2836 3113 1.893544 TATCGGAACCACGCCAAAAA 58.106 45.000 0.00 0.00 0.00 1.94
2837 3114 1.807742 CTTATCGGAACCACGCCAAAA 59.192 47.619 0.00 0.00 0.00 2.44
2838 3115 1.270947 ACTTATCGGAACCACGCCAAA 60.271 47.619 0.00 0.00 0.00 3.28
2839 3116 0.322322 ACTTATCGGAACCACGCCAA 59.678 50.000 0.00 0.00 0.00 4.52
2840 3117 0.390603 CACTTATCGGAACCACGCCA 60.391 55.000 0.00 0.00 0.00 5.69
2841 3118 1.087771 CCACTTATCGGAACCACGCC 61.088 60.000 0.00 0.00 0.00 5.68
2842 3119 0.390735 ACCACTTATCGGAACCACGC 60.391 55.000 0.00 0.00 0.00 5.34
2843 3120 1.355971 CACCACTTATCGGAACCACG 58.644 55.000 0.00 0.00 0.00 4.94
2844 3121 1.084289 GCACCACTTATCGGAACCAC 58.916 55.000 0.00 0.00 0.00 4.16
2845 3122 0.981183 AGCACCACTTATCGGAACCA 59.019 50.000 0.00 0.00 0.00 3.67
2846 3123 2.973694 TAGCACCACTTATCGGAACC 57.026 50.000 0.00 0.00 0.00 3.62
2847 3124 4.054780 TGATAGCACCACTTATCGGAAC 57.945 45.455 0.00 0.00 0.00 3.62
2848 3125 4.955811 ATGATAGCACCACTTATCGGAA 57.044 40.909 0.00 0.00 0.00 4.30
2849 3126 4.830600 TGTATGATAGCACCACTTATCGGA 59.169 41.667 0.00 0.00 0.00 4.55
2850 3127 5.134202 TGTATGATAGCACCACTTATCGG 57.866 43.478 0.00 0.00 0.00 4.18
2851 3128 5.807520 GGATGTATGATAGCACCACTTATCG 59.192 44.000 0.00 0.00 0.00 2.92
2852 3129 6.701340 TGGATGTATGATAGCACCACTTATC 58.299 40.000 0.00 0.00 0.00 1.75
2853 3130 6.270927 ACTGGATGTATGATAGCACCACTTAT 59.729 38.462 0.00 0.00 0.00 1.73
2854 3131 5.602561 ACTGGATGTATGATAGCACCACTTA 59.397 40.000 0.00 0.00 0.00 2.24
2855 3132 4.410228 ACTGGATGTATGATAGCACCACTT 59.590 41.667 0.00 0.00 0.00 3.16
2856 3133 3.969976 ACTGGATGTATGATAGCACCACT 59.030 43.478 0.00 0.00 0.00 4.00
2857 3134 4.342862 ACTGGATGTATGATAGCACCAC 57.657 45.455 0.00 0.00 0.00 4.16
2858 3135 4.408596 TCAACTGGATGTATGATAGCACCA 59.591 41.667 0.00 0.00 0.00 4.17
2859 3136 4.960938 TCAACTGGATGTATGATAGCACC 58.039 43.478 0.00 0.00 0.00 5.01
2860 3137 6.477669 CATCAACTGGATGTATGATAGCAC 57.522 41.667 0.00 0.00 46.81 4.40
2878 3155 2.441375 TGTGGGTTGAAGTCTCCATCAA 59.559 45.455 0.00 0.00 33.37 2.57
2879 3156 2.054021 TGTGGGTTGAAGTCTCCATCA 58.946 47.619 0.00 0.00 0.00 3.07
2880 3157 2.859165 TGTGGGTTGAAGTCTCCATC 57.141 50.000 0.00 0.00 0.00 3.51
2881 3158 3.490348 CTTTGTGGGTTGAAGTCTCCAT 58.510 45.455 0.00 0.00 0.00 3.41
2882 3159 2.422803 CCTTTGTGGGTTGAAGTCTCCA 60.423 50.000 0.00 0.00 0.00 3.86
2883 3160 2.230660 CCTTTGTGGGTTGAAGTCTCC 58.769 52.381 0.00 0.00 0.00 3.71
2895 3172 0.598065 GCAGCTGTTACCCTTTGTGG 59.402 55.000 16.64 0.00 0.00 4.17
2896 3173 0.238289 CGCAGCTGTTACCCTTTGTG 59.762 55.000 16.64 0.00 0.00 3.33
2897 3174 0.179029 ACGCAGCTGTTACCCTTTGT 60.179 50.000 16.64 0.00 0.00 2.83
2898 3175 0.238289 CACGCAGCTGTTACCCTTTG 59.762 55.000 16.64 0.00 0.00 2.77
2899 3176 0.107831 TCACGCAGCTGTTACCCTTT 59.892 50.000 16.64 0.00 0.00 3.11
2900 3177 0.320771 CTCACGCAGCTGTTACCCTT 60.321 55.000 16.64 0.00 0.00 3.95
2901 3178 1.293498 CTCACGCAGCTGTTACCCT 59.707 57.895 16.64 0.00 0.00 4.34
2902 3179 1.004918 ACTCACGCAGCTGTTACCC 60.005 57.895 16.64 0.00 0.00 3.69
2903 3180 1.014564 GGACTCACGCAGCTGTTACC 61.015 60.000 16.64 6.08 0.00 2.85
2904 3181 0.319555 TGGACTCACGCAGCTGTTAC 60.320 55.000 16.64 0.00 0.00 2.50
2905 3182 0.608130 ATGGACTCACGCAGCTGTTA 59.392 50.000 16.64 0.00 0.00 2.41
2906 3183 0.952497 CATGGACTCACGCAGCTGTT 60.952 55.000 16.64 0.00 0.00 3.16
2907 3184 1.375140 CATGGACTCACGCAGCTGT 60.375 57.895 16.64 0.00 0.00 4.40
2908 3185 2.104859 CCATGGACTCACGCAGCTG 61.105 63.158 10.11 10.11 0.00 4.24
2909 3186 2.267006 CCATGGACTCACGCAGCT 59.733 61.111 5.56 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.