>input_sequence_65268
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-------------------------------------------AGCTGAAGTC-CCATCCTAGAGGGGTAGAGGCATTCC
ATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCTGAAGGCTGTTTTCCCTCTACTGGATG
GTAAAGACTTGGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATGCATC
TGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACATTCTCCAA
GCCACGGAAGACAGTACACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTTGAGG
GATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATCCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACCAGAT
GTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGGGGCC
AGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAATACGTCGAGTTTTGATT
ACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGCCCAGACACCCTTTCATATCAGACATC
CGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTTGTGA
TGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGTGATT
T-GAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTGTATTACTGAAATATATGCTTTAAGA
TGTTGGAATAAA--------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G326700
GGCAATCAATTGTAGGTTTCATTTTTCATGTTTTGCGATTATATATCAGTTT-AGCATAAACTTGTACAGCTAGAATTAT
TGTGCTCATGTCGTATATATAGTACGTACAGTACTGGTTACAATATTTTCGATTGGCTTTCACTCAAGAAAGATTGGAGT
GGTTAACGATAAATGAATGCGTTGGAGATCAACAACATGTACGTGATGCATTATCAATAAAGAGTTGGGGTGTCATAGTT
CGGTTTGTGCTTTTGAGTAAATATGTTCTTATGCCAGACTGCAGATCAAAGC----------------------------
------TGAAAATGGGATATATTTGAAATAATTATTCTATGCCTAAAAAGGGAACGTTT---------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GTTTCGTGAGAATGTGCTTTCTTGAACTCCAGAGGTTTGGTGTTCCTTAATAAGTATATTGATCAACAACACAAATAGGA
CCATGTTTTGCTGTGAAGTTGAACATCTACCCTTGAAGGCACCATAGTCAATGCTTATTGTGGTATTGTGTCAAATCAGT
TTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGGTTGTGACTCAGAAACAAATGTAG------TTTCCATT
ACTGCCGGTATTATTTGAAAG----CTTATTTGTTAATCAAATTGATCATTTATTTCGTCTATCATTCTTGTGTAGTTCA
CACTCCCAACTACAACAGACATCACATTTCCAAATTATTATTGATCTGGAAGATGGAAGCTATTTT-TTTATGGACTACC
CCCTCCGTCCCATAATGTAAGATCGTTTTGCAAGCTGTTTTAGCTTGCAAAACGATCTTATATTGTGGGATGGATGGAGT
ATGTTCTAGCAATAGCCA----------------TTAGTCTAGGTATACTCTTCTACGTTTATCATCCTTGCAGATTCAG
ATTATAGTGAATTAAA-GATAGCAGTAGTCGTGCTACTTGAGTTTTTGACTGGGCATGAATTGATCAGTATTTGTTTAAC
CATCTCTTATTAATAGGCACTTCTGGTTCACTCTTTGGTTTCTAGCTGAAGTC-CCATCCTAGAGGGGTAGAGGCATTCC
ATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCTGAAGGCTGTTTTCCCTCTACTGGATG
GTAAAGACTTGGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATGCATC
TGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACATTCTCCAA
GCCACGGAAGACAGTACACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTTGAGG
GATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATCCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACCAGAT
GTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGGGGCC
AGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAATACGTCGAGTTTTGATT
ACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGCCCAGACACCCTTTCATATCAGACATC
CGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTTGTGA
TGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGTGATT
T-GAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTGTATTACTGAAATATATGCTTTAAGA
TGTTGGAATAAAATGGCGATGTGAGCCCATTGATTTTCTATACCGTTCATGATTTGGTATCGACTGATTTAGCCAGCAAG
GTGTTGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTCTATGGATAATTGCTTGTGCTAAATCAACAACAATTAATA
TGGATCGGAGGGAGTATATTATATTAGCCTGCTATTGTGTG-CCCATCATTTGTTCATTGGTGCATTCAAATTTTCGCG-
-AGTTTTTTAGCCTGGCATTTCATTGTTGTTGTTTTTTGACTTTGGCAAGGATTTCTAGCTTAGTATATTTGCTATTTCT
CGTGAAATTTGGTGGAGAGGGGAGGAGCGGGAGCGTTAGGAGTGTTGTTCCCTTTCTAGGGAGCTTACAAAAACTCTAGC
AGAGTTGC---------ACTCTTCAAAACACTC------------CCATCAAATTTGGGAGTGTGCGAGACAGATGTACA
AAATCAGAGTCACAATGTCTTGGCCTACAAAATGGTCTTTTCTCTTCTT--TTCGTTCACACATTTGGATTAAACGTTTC
ATATCATTTCGAAAGCATCATGCACACAATTTTTAAACAAAATTGCATGAATAGAAGACAAAACATTATGCACATTCAA-
---CATGTACAAATCACATATCCCCGACGACTCCCCCATTCTTTGCACCGTCCTTTCC-CCGGTATGTGCATAGTTGTAG
GATCGAAAGTATGTCTAAAGGGGGTTGGGGGGGGGGTGTGATTAGACTACTTGACCAAATAAGACATAACATTTTTTTTG
CAATTTTAGTTATGGACAAATTTTAGCAACTATGACAAGTCAAGCAACACCCTACACATGCAATTCTAAGAGTATAGCAG
CGGAAAGTAAGACACTGCACATGTAAGTAAAGAAAGGGTTTGGAGAAGGCAAACGCAACGGGGACACGAAGATTTTTGGC
GTGGTTCCGATAAGTGGTGCTATCATACATCCAGTTGATGGAGACTTCAACCCACAAAGGGTAACAGCTGCGTGAGTCCA
TGG
>chr2A_1
GGCAATCAATTGTAGGTTTCATTTTTCATGTTTTGGGATCATATATCAGTTT-AGCATAAACTTGTACAGCTAG------
-------------TATATATAGTACGTACAGTACTAGTTACAATACTTTCCATTGGCTTTCACTCAAGAAAGATTGGAGT
GGTTAACGGTAAATGAATGCGTTGGAGATCAACAACATGTACATGATGCATTATCAACAAAGAGTTGGGGTGTCATGGTT
CGGTTTGTGCTTTTGAGTAAACTAGATGATACCCCGCACGTTGTTGCGGGAATATTATGCAACACATTTCAGTGTGATTC
ATTGTATGAAACATGAATATTTGAAGCAATAATATAAAAGGCTAAAACTAAAAATACATATAATTTATTATGTTTGATTA
CTATATAAATGTAAAATGTATAAATAGCATAATAGAATGAAAATTCTCATGTCCGTTTGCATGTTGAGATGTGTCTTTTT
TCATGCATATTTCACGATCAAGTGGCATGCTTGCATGTTAAAAGACATATGGTAGTGGGGGTGGACCTTTTCTCATGCAT
GTTGTGTGATGATGTGGCATGCTTGCATGTTGAGAGAAATAGTTAGTGGGGGCTAGCTATTT------------------
------------------------------------AGACACCATGGTGAATGCTTATCGTGGTATTGTGTCAAATCAGT
TTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGTTTGTGACTCAGAAACAAATATAG------TTTCCATT
ACTGCCGGTATTATTTGAAAG----CTT----GTTAATCAAATTGATCATTTATTTCTTCTATCATTCTTGTGTAGTTCA
CACACCCAACTCCAACAGACATCACATTTCCAAATTATTACTGATCTGGAAGATGGAAGCTATTTTCTTTATGGACTACC
CCTTCCGTCCCATAATGTAAGATCGTTTTGCAAGCTGTTTTAGCTTGCAAAACGATCTTATATTGTGGGACGGAGGGAGT
ATGTTCTAGCAATAGCCATTGGTCCATGTTCTGCTTAGTCTAGGTATACTCTTCTACGTTTATCATCCATGCAGATTCAG
ATTATAGTGAATTAAAAGATAGCAGTAGTCTTGCTACTTCAGTTTTTGACTGGGCATGAATTGATCAGTATTTGTTTAAC
CATCTCTTATTAATAGGCACTTCCGGTTCACTTTTTGGTTTGTAGCTGAAGCCTCGATCCTAGAG-GGTAGAGGCATTCC
ATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGTGAAGTTCTGAAGGCTGTTTTCCCTCTACTGGATG
GTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATGCATC
TGCTCACGGAAATGGCCTTCCATCTGCAAACAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACGTTCTCCAA
GCCACGGAAGACAGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTTGAGG
GATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACCAGAT
GTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGGGGCC
AGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAACACGTCGAGTTTTGATT
ACATTGACAGCAATGCAGCACGGGCGTTGGCATATGAATATCTCAGGTTTTCGCCCAGACACCCTTTCATATCAGACATC
CGGGCCTGGATGTCCTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTTGTGA
TGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGTGA-T
T-GAGCCTTTGAGGCATGTAAAGAATGTTCATGATATGTTGATCATCTACTGTTGTAGTACTGAAATATATGCTTTAAGA
TGTTGGAATAAAATGGCGATGTGCGCCCATTTGTTTTCTATACCGTTCATGATTTGGTATTGACTGATTTAGCCAGCACG
GCG-TGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTATATAGATAATTGCTTGTGCTAAATCAACAACAATTAATA
TGGGTCGGAGGGAGTATATTATATTAGCCCGCTATTGTGTAACCAAACAATTCTTCATTGGTGCATTCAAATTTTA--G-
-AGTTTTTTAGCCTGGCACTTCATTGTTGTTGTTTTTTGACTTTTGCAAGGATTTCTAGCTTAGTATATTTG--------
----------------------AGGAGCAGGAGTGTTGC---------TCCCTTTCTAGGGAGCTTACAAAAACTCTAGC
AGAGTTGCCGTATGTGCACTCTTTAAAACACATATGAAGCGTGCTCTATCAAATTTGGGAGTGTGCGAGAC-GATGTACA
AAATCAGAGTCACAATGTCTTGGCCTTCAAAATGTT-TTTTCTCTCCTT--TTCGTTCACACATTTGGATTAAACGTTTC
ATATCATTTCAAAAGCATCATGCACACATTTTTCAAACAAAATTGCATGAATAAAATACAAAACATTATGCACATTCAAC
CAGCATGTACAAATCACATGTCGCCGACGACTCCTCCATTGTTTGCACCGTCTTTTCCTCCGGTATGTTCATAGT-----
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>chr2B_2
GCAATCATAC-GTAGGTTTCATTTTTCATGTTTTGGGATTATATATCAGTTTAAGCATAAACTTGTACAGCTAGAACTAT
TATGCTCATGTCGTGTA---------TACAGTACTAGTTACAATATTTTCCATTGGCTTTCACTCAAGAAAGATTGGAGT
GGT-AACGATAAATGAATGCGTTGGAGATCAACAACATGTACATGATGTATTATCAATAAAGAGTTGGGGTGTCATAGTT
CGGTTTGTGCTTTTGAGTAAATATGCTCTTATGCCAGACTGCAGATCAACAC----------------------------
------TGAAAATGGGATATATTTAAAAATATTATTCTAGGCCTAAAAAGGGAACATTT---------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GTTTTGTGAGGATGTGCTTTCCTGAACTCCAGAGGTTTGGTGTTCCTTAATAAGTATATTGATCAACAACACAAATGGGA
CCATGTTTTGCTGTGAAGTTGAACACCTACCCTTCAAGGCACCATAGTGAATGCTTATCGTGGTATTGTGTCAAATCAGT
TTGATCATAGCAACTACTCGTGGTAATCGGTTGGATCATTTGGTTGTGACTCAGAAACAAATATAGTTTCACTTTCCATT
ACTGCCAGTATTATTTGAAAGCCTACTT----GTTAATCAAATTGATCATTTATTTCTTCTATCATTCTTGTGTAGTTCA
CACCCCCAACTCCAACAGACATCACATTTCCAAATTATTATTAATCTGGAAGATGGAAGCTATTTTTTTTATGGACTA--
------------------------------------------------------------------------------GT
ATGTTCTAGCAATAGCCATTAGTCCATGTTCTGCTTAGTCTAGGTATACTCTTCTACGTTTATCATCCTTGCAGATTCAG
ATTATAGTGAATTAAAAGATAGCAGTAGTTGTGCTACTTCAGTTTTTGACTGGGCATGAATTGATCAGTATTTGTTTAAC
CATCTCTTATTAATAGACACTTCTGGTTCGCTCTTCGGTTTGTAGCTGAAGTCTCCATCCTAGAG-GGTAGAGGCATTCC
ATTTCCTTCAGTTCAGTGATTGAGAATGGAAAATGGATTTCCTGGCGAAGTTCTGAAGGCTGTTTTTCCTCTACTGGATG
GTAAAGACTTAGTCTTTTGCATGCTTGTATGCCGCCAATGGTGCGAAATTGCAAAGGATGATTACTTCTGGAAATGCATC
TGCTCACGGAAATGGCCTTCCATCTGCAAGCAGCCTCCTTCTGACACAAACTTCCAAAAGCTCTATTTAACGTTCTCCAA
GCCACGGAAGACGGTGCACCTTCCTGTACCTAAGCTCACTTTTGAGGATCTGGTGTTTTACATTGACATGTGGCTTGAGG
GATCACTAATCTTCTCTCAAGCAGTTTCAGGCTGCATTCTTCGAGCAGGTTTACAGAACACACCTGGCGGCATACCAGAT
GTACTTGTTGCACATCTGAATGCCGCAGACTGCATTTTGATGATGGAAGTCAAACCCAAGCTGACAGTCCCTATGGGGCC
AGCCATCACCGTGTCTGTTCTTGCCCACCGCAAGGACACCAACAAGATGACTTGCATAATCAATACGTCGAGTTTTGATT
ACATTGACAGCAATGCAGCACGGGCATTGGCATATGAATATCTCAGGTTTTCACCCAGACACCCTTTCATATCAGACATC
CGGGCTTGGATGTCGTTGCTTTTCCTGTATAAAGGAACAAACTCTATAGAGGTATTTGGTATTGAACTAGATTTTTGTGA
TGCGGCAAGGTCCGAGCCTGAGATCTTGTGGCTCTTAGACATGCTTGATTGGAAATAGAAGCTACTCTTTAGTTGTGA-T
TTGAGCCTTTGAGGTATGTAAAGAATGTTCATCATATGTTGATCATCTACTGTTGTAGTACTGACATATATGCTTTAAGA
TGCTGGAATAAAATGGCGATGTGCGCCCATTGGTTCTCTATACCGTTCATGATTTGGTATTGACTGATTTAGCTAGCACG
GTGTTGAAGACTGCCTTTTGGCCCATAGTAGATTTGGTTTCTATGGATAATTGCTTGTGCTAAATCAACAGCA-TTAATA
TGGGTCGAAGGGAGTGTATTATATTAGCCCGCTATTGTGTG-ACCATCATTTGTTCATTGGTGCATTCAAATTTTA--GC
GAGTTTTTTAGCTTGGCATTTCATTGTTGTTGTTTTTTGACTTTTGCAAGGATTTCTAGCTTAGTATATT-GCTCTTTCT
CATGAAAGTTGGTGGAGAGGGGAGGGGCGGGAGCGTTAGGAGTGTTGTTCCCTTTCTAGGGAGCTTACAAAAACTCTAGC
AGAGTTGCCGTATGTGCACTCTTTAAAACACATATGAAGCGTGCTCCATCAATTTTGGGAGTGTGCGAGTC-GATGTACA
AAATCAGAGTCACAATGTCTTGGCCTTCAAAATGTT-TTTTCTCTCTTCTATTCGTTCACACATTTGGATTAAACGTTTC
ATATCCTTTCGAAAGCATCATGCACACATTTTTCAAACAAAATTGCATGAATAAAAGACAAAACAATAAGCACATTCAAC
CGACATGTACAAATCACATGTCGCCGACGACTCC---ATTCTTTGCACCGTCCTTTCCTCCGGTATGTGCATAGT-----
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>SNPs
-----------------------------------S----------------------------------------S---
-S---------------------------------S--------------S-----------------------------
------------------------------------------S-------------------------------------
-------------------------S-----------------------SS-----------------------------
------------------------S---SS---------S---------------S------------------------
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----S-----S----------S------------------------------------------------------S---
-------------------------S--------S-------------S---------S---------------------
--------------------------------------------------------------S-----------------
----------------------------SSSS-------------------------S----------------------
---S-------S--------------------------------------------------------------------
--S-------------------------------------------------------------------S---S-----
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---------------------------------------S----------------------------------------
-----------------------------------------S-----------------------S--------------
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----------S---------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------S----------------------------------------------------------------
-------------------------------------S------------------------------------------
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------------------------------------------------------------------------------S-
---------------------------------------------------------S----------------------
-----------------------S--------S---------------------------S-----------------S-
--------------------------------------------------------------------------------
---S-------------------------S---------------------------------------------SSS--
--------------------------------------------S-----------------------------S-----
-S-----S------------------------------------------------------------------------
-----------------------S-------SS--------------------------------------S--------
--------------------------S-------S-S--------S----------------------------------
----------------------------S----S-------------------S--------------------------
-------------------S--S-----------S----------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_689
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----------------------------ACCCTTGAAGGCACCATAGTC-------------------------------
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>reverse_2488
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-------TTTGGTGGAGAGGGGAGGAG-----------------------------------------------------
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