Multiple sequence alignment - TraesCS2D01G326200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G326200 chr2D 100.000 3830 0 0 1 3830 419778002 419781831 0.000000e+00 7073.0
1 TraesCS2D01G326200 chr2D 98.630 292 4 0 182 473 419776109 419775818 5.670000e-143 518.0
2 TraesCS2D01G326200 chr2D 83.071 254 27 8 474 712 625626705 625626957 2.320000e-52 217.0
3 TraesCS2D01G326200 chr2B 95.029 3118 115 23 736 3830 492143399 492146499 0.000000e+00 4863.0
4 TraesCS2D01G326200 chr2B 96.918 292 8 1 182 473 492092674 492092384 4.450000e-134 488.0
5 TraesCS2D01G326200 chr2A 94.786 2474 96 14 871 3334 570197712 570195262 0.000000e+00 3823.0
6 TraesCS2D01G326200 chr2A 95.499 511 12 3 3321 3830 570195234 570194734 0.000000e+00 806.0
7 TraesCS2D01G326200 chr2A 95.131 267 11 1 182 446 570250937 570251203 1.650000e-113 420.0
8 TraesCS2D01G326200 chr5B 95.288 191 5 4 1 190 553934911 553935098 2.240000e-77 300.0
9 TraesCS2D01G326200 chr5B 93.717 191 9 3 1 190 612593204 612593392 2.250000e-72 283.0
10 TraesCS2D01G326200 chr5B 96.450 169 4 2 1 168 398440332 398440499 1.050000e-70 278.0
11 TraesCS2D01G326200 chr5B 82.520 246 27 9 483 712 65535582 65535337 6.490000e-48 202.0
12 TraesCS2D01G326200 chr5B 81.154 260 30 12 475 718 15329488 15329744 1.400000e-44 191.0
13 TraesCS2D01G326200 chr6B 94.792 192 7 3 1 190 278543072 278543262 2.890000e-76 296.0
14 TraesCS2D01G326200 chr6B 97.110 173 4 1 1 172 591278039 591278211 1.350000e-74 291.0
15 TraesCS2D01G326200 chr6B 87.398 246 17 8 474 705 135370203 135370448 1.750000e-68 270.0
16 TraesCS2D01G326200 chr3B 93.750 192 8 4 1 190 61101102 61101291 6.260000e-73 285.0
17 TraesCS2D01G326200 chrUn 93.717 191 9 3 1 190 45543992 45544180 2.250000e-72 283.0
18 TraesCS2D01G326200 chrUn 86.454 251 20 8 474 712 45544584 45544832 2.930000e-66 263.0
19 TraesCS2D01G326200 chr7A 96.988 166 5 0 1 166 100550522 100550357 2.910000e-71 279.0
20 TraesCS2D01G326200 chr7D 91.146 192 15 2 1 190 265266325 265266134 3.800000e-65 259.0
21 TraesCS2D01G326200 chr1A 85.098 255 21 7 474 713 367029272 367029524 1.060000e-60 244.0
22 TraesCS2D01G326200 chr1A 83.922 255 26 7 475 714 367028271 367028017 2.980000e-56 230.0
23 TraesCS2D01G326200 chr1A 82.677 254 28 10 474 713 10435427 10435678 1.080000e-50 211.0
24 TraesCS2D01G326200 chr4A 84.646 254 24 7 474 712 25795846 25796099 4.940000e-59 239.0
25 TraesCS2D01G326200 chr3A 84.524 252 23 8 472 708 557505829 557506079 6.400000e-58 235.0
26 TraesCS2D01G326200 chr3D 90.000 50 5 0 761 810 481565324 481565275 8.880000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G326200 chr2D 419778002 419781831 3829 False 7073.0 7073 100.0000 1 3830 1 chr2D.!!$F1 3829
1 TraesCS2D01G326200 chr2B 492143399 492146499 3100 False 4863.0 4863 95.0290 736 3830 1 chr2B.!!$F1 3094
2 TraesCS2D01G326200 chr2A 570194734 570197712 2978 True 2314.5 3823 95.1425 871 3830 2 chr2A.!!$R1 2959
3 TraesCS2D01G326200 chrUn 45543992 45544832 840 False 273.0 283 90.0855 1 712 2 chrUn.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 584 0.036483 ATATGGCGGCGCATGTATCA 60.036 50.000 34.36 21.01 0.00 2.15 F
727 1062 0.248289 TAGCTGGGTTAACGGCAGTC 59.752 55.000 15.54 0.00 45.17 3.51 F
734 1069 0.458025 GTTAACGGCAGTCTCGGGAG 60.458 60.000 0.00 0.00 0.00 4.30 F
1886 2247 0.381089 GATCTGGACGGTGTAGACGG 59.619 60.000 0.00 0.00 35.23 4.79 F
2466 2827 1.067974 CCTGACAACACGACCTACACA 59.932 52.381 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2113 0.603569 TCGCAAGGTCTCCAAGTCTC 59.396 55.000 0.0 0.0 38.47 3.36 R
1756 2117 1.294659 GCACTCGCAAGGTCTCCAAG 61.295 60.000 0.0 0.0 38.36 3.61 R
2328 2689 1.347707 TCATCCAACGCAACCTCTTCT 59.652 47.619 0.0 0.0 0.00 2.85 R
2741 3102 1.135024 CAAAATCTGGCACCATTCCGG 60.135 52.381 0.0 0.0 42.50 5.14 R
3428 3842 3.768215 AGCTGAACTGAGATGAGATGTCA 59.232 43.478 0.0 0.0 37.02 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 519 7.593825 AGTTAATATTTGTTGAACACTGAGGC 58.406 34.615 0.00 0.00 0.00 4.70
197 520 7.448469 AGTTAATATTTGTTGAACACTGAGGCT 59.552 33.333 0.00 0.00 0.00 4.58
198 521 6.655078 AATATTTGTTGAACACTGAGGCTT 57.345 33.333 0.00 0.00 0.00 4.35
199 522 6.655078 ATATTTGTTGAACACTGAGGCTTT 57.345 33.333 0.00 0.00 0.00 3.51
203 526 7.575414 TTTGTTGAACACTGAGGCTTTATAA 57.425 32.000 0.00 0.00 0.00 0.98
205 528 7.144722 TGTTGAACACTGAGGCTTTATAATG 57.855 36.000 0.00 0.00 0.00 1.90
206 529 6.939730 TGTTGAACACTGAGGCTTTATAATGA 59.060 34.615 0.00 0.00 0.00 2.57
207 530 7.446931 TGTTGAACACTGAGGCTTTATAATGAA 59.553 33.333 0.00 0.00 0.00 2.57
208 531 7.994425 TGAACACTGAGGCTTTATAATGAAA 57.006 32.000 2.66 0.00 0.00 2.69
209 532 8.402798 TGAACACTGAGGCTTTATAATGAAAA 57.597 30.769 2.66 0.00 0.00 2.29
211 534 9.860898 GAACACTGAGGCTTTATAATGAAAAAT 57.139 29.630 2.66 0.00 0.00 1.82
213 536 9.860898 ACACTGAGGCTTTATAATGAAAAATTC 57.139 29.630 2.66 0.00 0.00 2.17
214 537 9.859427 CACTGAGGCTTTATAATGAAAAATTCA 57.141 29.630 2.66 0.00 45.01 2.57
215 538 9.860898 ACTGAGGCTTTATAATGAAAAATTCAC 57.139 29.630 2.66 0.00 43.48 3.18
235 558 8.809159 ATTCACTATGTGAGTTTAGATCGATG 57.191 34.615 0.54 0.00 43.69 3.84
236 559 6.739112 TCACTATGTGAGTTTAGATCGATGG 58.261 40.000 0.54 0.00 37.67 3.51
237 560 6.546034 TCACTATGTGAGTTTAGATCGATGGA 59.454 38.462 0.54 0.00 37.67 3.41
239 562 7.540400 CACTATGTGAGTTTAGATCGATGGATC 59.460 40.741 0.54 9.54 42.21 3.36
249 572 2.947448 TCGATGGATCTGATATGGCG 57.053 50.000 0.00 0.00 0.00 5.69
250 573 1.478105 TCGATGGATCTGATATGGCGG 59.522 52.381 0.00 0.00 0.00 6.13
252 575 0.107993 ATGGATCTGATATGGCGGCG 60.108 55.000 0.51 0.51 0.00 6.46
253 576 2.103042 GGATCTGATATGGCGGCGC 61.103 63.158 26.17 26.17 0.00 6.53
254 577 1.374631 GATCTGATATGGCGGCGCA 60.375 57.895 34.36 19.88 0.00 6.09
255 578 0.742281 GATCTGATATGGCGGCGCAT 60.742 55.000 34.36 24.89 0.00 4.73
256 579 1.022982 ATCTGATATGGCGGCGCATG 61.023 55.000 34.36 13.98 0.00 4.06
257 580 1.962822 CTGATATGGCGGCGCATGT 60.963 57.895 34.36 21.58 0.00 3.21
260 583 0.652592 GATATGGCGGCGCATGTATC 59.347 55.000 34.36 28.01 0.00 2.24
261 584 0.036483 ATATGGCGGCGCATGTATCA 60.036 50.000 34.36 21.01 0.00 2.15
263 586 1.300971 ATGGCGGCGCATGTATCATC 61.301 55.000 34.36 13.15 0.00 2.92
265 588 1.669115 GCGGCGCATGTATCATCCT 60.669 57.895 29.21 0.00 0.00 3.24
266 589 1.230635 GCGGCGCATGTATCATCCTT 61.231 55.000 29.21 0.00 0.00 3.36
267 590 1.229428 CGGCGCATGTATCATCCTTT 58.771 50.000 10.83 0.00 0.00 3.11
268 591 1.195448 CGGCGCATGTATCATCCTTTC 59.805 52.381 10.83 0.00 0.00 2.62
269 592 2.498167 GGCGCATGTATCATCCTTTCT 58.502 47.619 10.83 0.00 0.00 2.52
270 593 2.880890 GGCGCATGTATCATCCTTTCTT 59.119 45.455 10.83 0.00 0.00 2.52
271 594 3.304257 GGCGCATGTATCATCCTTTCTTG 60.304 47.826 10.83 0.00 0.00 3.02
272 595 3.561310 GCGCATGTATCATCCTTTCTTGA 59.439 43.478 0.30 0.00 0.00 3.02
273 596 4.035558 GCGCATGTATCATCCTTTCTTGAA 59.964 41.667 0.30 0.00 0.00 2.69
274 597 5.745514 CGCATGTATCATCCTTTCTTGAAG 58.254 41.667 0.00 0.00 35.02 3.02
287 610 6.194796 CTTTCTTGAAGGTGTTCACTTTGA 57.805 37.500 5.11 0.00 42.60 2.69
288 611 6.582677 TTTCTTGAAGGTGTTCACTTTGAA 57.417 33.333 5.11 2.84 42.60 2.69
289 612 5.818136 TCTTGAAGGTGTTCACTTTGAAG 57.182 39.130 16.13 16.13 42.60 3.02
290 613 4.096382 TCTTGAAGGTGTTCACTTTGAAGC 59.904 41.667 16.97 1.52 42.60 3.86
291 614 3.351740 TGAAGGTGTTCACTTTGAAGCA 58.648 40.909 5.11 0.00 37.00 3.91
292 615 3.761218 TGAAGGTGTTCACTTTGAAGCAA 59.239 39.130 5.11 0.00 37.00 3.91
293 616 4.402155 TGAAGGTGTTCACTTTGAAGCAAT 59.598 37.500 5.11 0.00 37.00 3.56
294 617 4.311816 AGGTGTTCACTTTGAAGCAATG 57.688 40.909 2.98 0.00 37.00 2.82
295 618 3.953612 AGGTGTTCACTTTGAAGCAATGA 59.046 39.130 2.98 0.00 37.00 2.57
296 619 4.586001 AGGTGTTCACTTTGAAGCAATGAT 59.414 37.500 2.98 0.00 37.00 2.45
297 620 4.682860 GGTGTTCACTTTGAAGCAATGATG 59.317 41.667 2.98 0.00 37.00 3.07
298 621 5.507817 GGTGTTCACTTTGAAGCAATGATGA 60.508 40.000 2.98 0.00 37.00 2.92
299 622 5.400485 GTGTTCACTTTGAAGCAATGATGAC 59.600 40.000 0.00 0.00 37.00 3.06
300 623 5.067544 TGTTCACTTTGAAGCAATGATGACA 59.932 36.000 0.00 0.00 37.00 3.58
301 624 5.112220 TCACTTTGAAGCAATGATGACAC 57.888 39.130 0.00 0.00 0.00 3.67
302 625 4.579753 TCACTTTGAAGCAATGATGACACA 59.420 37.500 0.00 0.00 0.00 3.72
303 626 5.242171 TCACTTTGAAGCAATGATGACACAT 59.758 36.000 0.00 0.00 0.00 3.21
304 627 5.344933 CACTTTGAAGCAATGATGACACATG 59.655 40.000 0.00 0.00 0.00 3.21
305 628 5.010314 ACTTTGAAGCAATGATGACACATGT 59.990 36.000 0.00 0.00 0.00 3.21
306 629 5.456548 TTGAAGCAATGATGACACATGTT 57.543 34.783 0.00 0.00 0.00 2.71
307 630 5.456548 TGAAGCAATGATGACACATGTTT 57.543 34.783 0.00 0.00 0.00 2.83
308 631 5.845103 TGAAGCAATGATGACACATGTTTT 58.155 33.333 0.00 0.00 0.00 2.43
309 632 5.921976 TGAAGCAATGATGACACATGTTTTC 59.078 36.000 0.00 0.00 0.00 2.29
310 633 5.717078 AGCAATGATGACACATGTTTTCT 57.283 34.783 0.00 0.00 0.00 2.52
311 634 5.466819 AGCAATGATGACACATGTTTTCTG 58.533 37.500 0.00 0.00 0.00 3.02
312 635 5.242171 AGCAATGATGACACATGTTTTCTGA 59.758 36.000 0.00 0.00 0.00 3.27
313 636 5.921976 GCAATGATGACACATGTTTTCTGAA 59.078 36.000 0.00 0.00 0.00 3.02
314 637 6.089016 GCAATGATGACACATGTTTTCTGAAG 59.911 38.462 0.00 0.00 0.00 3.02
315 638 6.889301 ATGATGACACATGTTTTCTGAAGT 57.111 33.333 0.00 0.00 0.00 3.01
316 639 6.063640 TGATGACACATGTTTTCTGAAGTG 57.936 37.500 0.00 5.49 0.00 3.16
317 640 5.821995 TGATGACACATGTTTTCTGAAGTGA 59.178 36.000 12.04 0.00 0.00 3.41
318 641 6.487668 TGATGACACATGTTTTCTGAAGTGAT 59.512 34.615 12.04 0.00 0.00 3.06
319 642 6.304356 TGACACATGTTTTCTGAAGTGATC 57.696 37.500 12.04 7.55 0.00 2.92
320 643 5.821995 TGACACATGTTTTCTGAAGTGATCA 59.178 36.000 12.04 0.00 36.38 2.92
321 644 6.318396 TGACACATGTTTTCTGAAGTGATCAA 59.682 34.615 12.04 0.00 37.67 2.57
322 645 7.099266 ACACATGTTTTCTGAAGTGATCAAA 57.901 32.000 12.04 0.00 37.67 2.69
323 646 7.546358 ACACATGTTTTCTGAAGTGATCAAAA 58.454 30.769 12.04 0.00 37.67 2.44
324 647 7.489113 ACACATGTTTTCTGAAGTGATCAAAAC 59.511 33.333 12.04 3.45 38.43 2.43
325 648 6.980397 ACATGTTTTCTGAAGTGATCAAAACC 59.020 34.615 12.17 0.00 37.71 3.27
326 649 5.901552 TGTTTTCTGAAGTGATCAAAACCC 58.098 37.500 12.17 0.00 37.71 4.11
327 650 5.656416 TGTTTTCTGAAGTGATCAAAACCCT 59.344 36.000 12.17 0.00 37.71 4.34
328 651 6.183360 TGTTTTCTGAAGTGATCAAAACCCTC 60.183 38.462 12.17 0.00 37.71 4.30
329 652 4.705110 TCTGAAGTGATCAAAACCCTCA 57.295 40.909 0.00 0.00 37.67 3.86
330 653 5.047566 TCTGAAGTGATCAAAACCCTCAA 57.952 39.130 0.00 0.00 37.67 3.02
331 654 5.634118 TCTGAAGTGATCAAAACCCTCAAT 58.366 37.500 0.00 0.00 37.67 2.57
332 655 6.778821 TCTGAAGTGATCAAAACCCTCAATA 58.221 36.000 0.00 0.00 37.67 1.90
333 656 7.405292 TCTGAAGTGATCAAAACCCTCAATAT 58.595 34.615 0.00 0.00 37.67 1.28
334 657 7.337689 TCTGAAGTGATCAAAACCCTCAATATG 59.662 37.037 0.00 0.00 37.67 1.78
335 658 6.947733 TGAAGTGATCAAAACCCTCAATATGT 59.052 34.615 0.00 0.00 34.30 2.29
336 659 6.764308 AGTGATCAAAACCCTCAATATGTG 57.236 37.500 0.00 0.00 0.00 3.21
337 660 5.126061 AGTGATCAAAACCCTCAATATGTGC 59.874 40.000 0.00 0.00 0.00 4.57
338 661 5.126061 GTGATCAAAACCCTCAATATGTGCT 59.874 40.000 0.00 0.00 0.00 4.40
339 662 6.318648 GTGATCAAAACCCTCAATATGTGCTA 59.681 38.462 0.00 0.00 0.00 3.49
340 663 6.318648 TGATCAAAACCCTCAATATGTGCTAC 59.681 38.462 0.00 0.00 0.00 3.58
341 664 5.815581 TCAAAACCCTCAATATGTGCTACT 58.184 37.500 0.00 0.00 0.00 2.57
342 665 5.880332 TCAAAACCCTCAATATGTGCTACTC 59.120 40.000 0.00 0.00 0.00 2.59
343 666 4.423625 AACCCTCAATATGTGCTACTCC 57.576 45.455 0.00 0.00 0.00 3.85
344 667 3.384168 ACCCTCAATATGTGCTACTCCA 58.616 45.455 0.00 0.00 0.00 3.86
345 668 3.780294 ACCCTCAATATGTGCTACTCCAA 59.220 43.478 0.00 0.00 0.00 3.53
346 669 4.413520 ACCCTCAATATGTGCTACTCCAAT 59.586 41.667 0.00 0.00 0.00 3.16
347 670 5.103940 ACCCTCAATATGTGCTACTCCAATT 60.104 40.000 0.00 0.00 0.00 2.32
348 671 6.101150 ACCCTCAATATGTGCTACTCCAATTA 59.899 38.462 0.00 0.00 0.00 1.40
349 672 6.998074 CCCTCAATATGTGCTACTCCAATTAA 59.002 38.462 0.00 0.00 0.00 1.40
350 673 7.041098 CCCTCAATATGTGCTACTCCAATTAAC 60.041 40.741 0.00 0.00 0.00 2.01
351 674 7.716998 CCTCAATATGTGCTACTCCAATTAACT 59.283 37.037 0.00 0.00 0.00 2.24
352 675 9.764363 CTCAATATGTGCTACTCCAATTAACTA 57.236 33.333 0.00 0.00 0.00 2.24
356 679 6.677781 TGTGCTACTCCAATTAACTATTGC 57.322 37.500 0.00 0.00 41.93 3.56
357 680 6.414732 TGTGCTACTCCAATTAACTATTGCT 58.585 36.000 0.00 0.00 41.93 3.91
358 681 7.561251 TGTGCTACTCCAATTAACTATTGCTA 58.439 34.615 0.00 0.00 41.93 3.49
359 682 7.710907 TGTGCTACTCCAATTAACTATTGCTAG 59.289 37.037 0.00 0.00 41.93 3.42
360 683 7.926555 GTGCTACTCCAATTAACTATTGCTAGA 59.073 37.037 0.00 0.00 41.93 2.43
361 684 7.926555 TGCTACTCCAATTAACTATTGCTAGAC 59.073 37.037 0.00 0.00 41.93 2.59
362 685 7.926555 GCTACTCCAATTAACTATTGCTAGACA 59.073 37.037 0.00 0.00 41.93 3.41
363 686 9.817809 CTACTCCAATTAACTATTGCTAGACAA 57.182 33.333 0.00 0.00 41.93 3.18
375 698 4.060038 TGCTAGACAATAGTTGCTAGGC 57.940 45.455 15.88 11.50 37.61 3.93
376 699 3.181465 TGCTAGACAATAGTTGCTAGGCC 60.181 47.826 0.00 0.00 37.61 5.19
377 700 3.070302 GCTAGACAATAGTTGCTAGGCCT 59.930 47.826 11.78 11.78 37.61 5.19
378 701 4.443598 GCTAGACAATAGTTGCTAGGCCTT 60.444 45.833 12.58 0.00 37.61 4.35
379 702 4.143986 AGACAATAGTTGCTAGGCCTTC 57.856 45.455 12.58 3.76 0.00 3.46
380 703 3.519510 AGACAATAGTTGCTAGGCCTTCA 59.480 43.478 12.58 6.99 0.00 3.02
381 704 4.019321 AGACAATAGTTGCTAGGCCTTCAA 60.019 41.667 12.58 13.55 0.00 2.69
382 705 4.265073 ACAATAGTTGCTAGGCCTTCAAG 58.735 43.478 12.58 2.82 0.00 3.02
383 706 4.263506 ACAATAGTTGCTAGGCCTTCAAGT 60.264 41.667 23.09 23.09 0.00 3.16
384 707 5.045869 ACAATAGTTGCTAGGCCTTCAAGTA 60.046 40.000 24.94 24.94 32.29 2.24
385 708 3.336138 AGTTGCTAGGCCTTCAAGTAC 57.664 47.619 12.58 5.47 0.00 2.73
386 709 2.637872 AGTTGCTAGGCCTTCAAGTACA 59.362 45.455 12.58 0.00 0.00 2.90
387 710 3.072476 AGTTGCTAGGCCTTCAAGTACAA 59.928 43.478 12.58 0.00 0.00 2.41
388 711 3.334583 TGCTAGGCCTTCAAGTACAAG 57.665 47.619 12.58 0.00 0.00 3.16
389 712 2.903784 TGCTAGGCCTTCAAGTACAAGA 59.096 45.455 12.58 0.00 0.00 3.02
390 713 3.326588 TGCTAGGCCTTCAAGTACAAGAA 59.673 43.478 12.58 0.00 0.00 2.52
391 714 4.202419 TGCTAGGCCTTCAAGTACAAGAAA 60.202 41.667 12.58 0.00 0.00 2.52
392 715 4.760204 GCTAGGCCTTCAAGTACAAGAAAA 59.240 41.667 12.58 0.00 0.00 2.29
393 716 5.416013 GCTAGGCCTTCAAGTACAAGAAAAT 59.584 40.000 12.58 0.00 0.00 1.82
394 717 6.598064 GCTAGGCCTTCAAGTACAAGAAAATA 59.402 38.462 12.58 0.00 0.00 1.40
395 718 7.283354 GCTAGGCCTTCAAGTACAAGAAAATAT 59.717 37.037 12.58 0.00 0.00 1.28
396 719 9.832445 CTAGGCCTTCAAGTACAAGAAAATATA 57.168 33.333 12.58 0.00 0.00 0.86
397 720 8.738645 AGGCCTTCAAGTACAAGAAAATATAG 57.261 34.615 0.00 0.00 0.00 1.31
398 721 8.329502 AGGCCTTCAAGTACAAGAAAATATAGT 58.670 33.333 0.00 0.00 0.00 2.12
399 722 9.609346 GGCCTTCAAGTACAAGAAAATATAGTA 57.391 33.333 0.00 0.00 0.00 1.82
405 728 9.901172 CAAGTACAAGAAAATATAGTAAGGGGT 57.099 33.333 0.00 0.00 0.00 4.95
412 735 8.975663 AGAAAATATAGTAAGGGGTAACTTGC 57.024 34.615 0.00 0.00 33.89 4.01
413 736 7.997223 AGAAAATATAGTAAGGGGTAACTTGCC 59.003 37.037 0.00 0.00 34.16 4.52
414 737 5.837770 ATATAGTAAGGGGTAACTTGCCC 57.162 43.478 6.39 6.39 45.35 5.36
421 744 2.893215 GGGTAACTTGCCCCTTAGTT 57.107 50.000 3.51 0.00 40.26 2.24
422 745 2.443416 GGGTAACTTGCCCCTTAGTTG 58.557 52.381 3.51 0.00 40.26 3.16
423 746 2.040679 GGGTAACTTGCCCCTTAGTTGA 59.959 50.000 3.51 0.00 40.26 3.18
424 747 3.344515 GGTAACTTGCCCCTTAGTTGAG 58.655 50.000 0.00 0.00 36.16 3.02
425 748 3.008704 GGTAACTTGCCCCTTAGTTGAGA 59.991 47.826 0.00 0.00 36.16 3.27
426 749 3.876309 AACTTGCCCCTTAGTTGAGAA 57.124 42.857 0.00 0.00 33.55 2.87
427 750 3.876309 ACTTGCCCCTTAGTTGAGAAA 57.124 42.857 0.00 0.00 0.00 2.52
428 751 3.487372 ACTTGCCCCTTAGTTGAGAAAC 58.513 45.455 0.00 0.00 0.00 2.78
429 752 3.117663 ACTTGCCCCTTAGTTGAGAAACA 60.118 43.478 0.00 0.00 0.00 2.83
430 753 3.140325 TGCCCCTTAGTTGAGAAACAG 57.860 47.619 0.00 0.00 0.00 3.16
431 754 2.708861 TGCCCCTTAGTTGAGAAACAGA 59.291 45.455 0.00 0.00 0.00 3.41
432 755 3.244561 TGCCCCTTAGTTGAGAAACAGAG 60.245 47.826 0.00 0.00 0.00 3.35
433 756 3.870299 GCCCCTTAGTTGAGAAACAGAGG 60.870 52.174 0.00 0.00 0.00 3.69
434 757 3.328050 CCCCTTAGTTGAGAAACAGAGGT 59.672 47.826 8.51 0.00 0.00 3.85
435 758 4.530946 CCCCTTAGTTGAGAAACAGAGGTA 59.469 45.833 8.51 0.00 0.00 3.08
436 759 5.189934 CCCCTTAGTTGAGAAACAGAGGTAT 59.810 44.000 8.51 0.00 0.00 2.73
437 760 6.296489 CCCCTTAGTTGAGAAACAGAGGTATT 60.296 42.308 8.51 0.00 0.00 1.89
438 761 7.093024 CCCCTTAGTTGAGAAACAGAGGTATTA 60.093 40.741 8.51 0.00 0.00 0.98
439 762 7.982354 CCCTTAGTTGAGAAACAGAGGTATTAG 59.018 40.741 8.51 0.00 0.00 1.73
440 763 7.982354 CCTTAGTTGAGAAACAGAGGTATTAGG 59.018 40.741 0.00 0.00 0.00 2.69
441 764 5.735766 AGTTGAGAAACAGAGGTATTAGGC 58.264 41.667 0.00 0.00 0.00 3.93
442 765 5.485708 AGTTGAGAAACAGAGGTATTAGGCT 59.514 40.000 0.00 0.00 0.00 4.58
443 766 6.668283 AGTTGAGAAACAGAGGTATTAGGCTA 59.332 38.462 0.00 0.00 0.00 3.93
444 767 6.466885 TGAGAAACAGAGGTATTAGGCTAC 57.533 41.667 0.00 0.00 0.00 3.58
445 768 5.955959 TGAGAAACAGAGGTATTAGGCTACA 59.044 40.000 0.00 0.00 0.00 2.74
446 769 6.127423 TGAGAAACAGAGGTATTAGGCTACAC 60.127 42.308 0.00 0.00 0.00 2.90
447 770 5.958987 AGAAACAGAGGTATTAGGCTACACT 59.041 40.000 0.00 0.00 0.00 3.55
448 771 6.440965 AGAAACAGAGGTATTAGGCTACACTT 59.559 38.462 0.00 0.00 0.00 3.16
449 772 5.855740 ACAGAGGTATTAGGCTACACTTC 57.144 43.478 0.00 1.67 0.00 3.01
450 773 5.269991 ACAGAGGTATTAGGCTACACTTCA 58.730 41.667 15.60 0.00 0.00 3.02
451 774 5.127356 ACAGAGGTATTAGGCTACACTTCAC 59.873 44.000 15.60 1.10 0.00 3.18
452 775 5.361285 CAGAGGTATTAGGCTACACTTCACT 59.639 44.000 15.60 2.61 0.00 3.41
453 776 6.546403 CAGAGGTATTAGGCTACACTTCACTA 59.454 42.308 15.60 0.00 0.00 2.74
454 777 6.546772 AGAGGTATTAGGCTACACTTCACTAC 59.453 42.308 15.60 0.00 0.00 2.73
455 778 6.192773 AGGTATTAGGCTACACTTCACTACA 58.807 40.000 0.00 0.00 0.00 2.74
456 779 6.666546 AGGTATTAGGCTACACTTCACTACAA 59.333 38.462 0.00 0.00 0.00 2.41
457 780 7.344871 AGGTATTAGGCTACACTTCACTACAAT 59.655 37.037 0.00 0.00 0.00 2.71
458 781 7.985752 GGTATTAGGCTACACTTCACTACAATT 59.014 37.037 0.00 0.00 0.00 2.32
461 784 9.953565 ATTAGGCTACACTTCACTACAATTAAA 57.046 29.630 0.00 0.00 0.00 1.52
462 785 9.781633 TTAGGCTACACTTCACTACAATTAAAA 57.218 29.630 0.00 0.00 0.00 1.52
463 786 8.324163 AGGCTACACTTCACTACAATTAAAAG 57.676 34.615 0.00 0.00 0.00 2.27
464 787 7.937394 AGGCTACACTTCACTACAATTAAAAGT 59.063 33.333 0.00 0.00 0.00 2.66
465 788 8.228464 GGCTACACTTCACTACAATTAAAAGTC 58.772 37.037 0.00 0.00 0.00 3.01
466 789 8.989980 GCTACACTTCACTACAATTAAAAGTCT 58.010 33.333 0.00 0.00 0.00 3.24
469 792 8.989980 ACACTTCACTACAATTAAAAGTCTAGC 58.010 33.333 0.00 0.00 0.00 3.42
470 793 8.443937 CACTTCACTACAATTAAAAGTCTAGCC 58.556 37.037 0.00 0.00 0.00 3.93
471 794 8.154856 ACTTCACTACAATTAAAAGTCTAGCCA 58.845 33.333 0.00 0.00 0.00 4.75
472 795 9.167311 CTTCACTACAATTAAAAGTCTAGCCAT 57.833 33.333 0.00 0.00 0.00 4.40
509 832 4.107051 GTGCATGCACCTGTCGGC 62.107 66.667 35.69 12.07 40.79 5.54
519 842 1.275291 CACCTGTCGGCCTAGAGAAAA 59.725 52.381 2.54 0.00 0.00 2.29
554 877 3.872431 GGCTAGTAGTGGGCCGAT 58.128 61.111 0.00 0.00 36.37 4.18
614 941 4.767255 GCAGTGGGCCGACTGGAG 62.767 72.222 38.70 21.40 43.17 3.86
625 952 1.153208 GACTGGAGGCCATCAGCAG 60.153 63.158 20.80 13.22 46.50 4.24
638 965 1.377725 CAGCAGTAGGCCAACTGGG 60.378 63.158 16.62 0.00 45.75 4.45
641 968 0.326927 GCAGTAGGCCAACTGGGTAA 59.673 55.000 16.62 0.00 45.75 2.85
646 973 5.455612 GCAGTAGGCCAACTGGGTAATATTA 60.456 44.000 16.62 0.00 45.75 0.98
647 974 6.597562 CAGTAGGCCAACTGGGTAATATTAA 58.402 40.000 5.01 0.00 42.63 1.40
722 1057 6.445357 ACAAAATATTAGCTGGGTTAACGG 57.555 37.500 0.00 0.00 0.00 4.44
723 1058 5.163591 ACAAAATATTAGCTGGGTTAACGGC 60.164 40.000 0.00 4.30 43.08 5.68
724 1059 3.849563 ATATTAGCTGGGTTAACGGCA 57.150 42.857 15.54 1.36 45.17 5.69
725 1060 2.038387 ATTAGCTGGGTTAACGGCAG 57.962 50.000 15.54 0.00 45.17 4.85
726 1061 0.688487 TTAGCTGGGTTAACGGCAGT 59.312 50.000 15.54 0.00 45.17 4.40
727 1062 0.248289 TAGCTGGGTTAACGGCAGTC 59.752 55.000 15.54 0.00 45.17 3.51
728 1063 1.003718 GCTGGGTTAACGGCAGTCT 60.004 57.895 0.00 0.00 42.32 3.24
729 1064 1.019805 GCTGGGTTAACGGCAGTCTC 61.020 60.000 0.00 0.00 42.32 3.36
730 1065 0.736325 CTGGGTTAACGGCAGTCTCG 60.736 60.000 0.00 0.00 0.00 4.04
731 1066 1.447314 GGGTTAACGGCAGTCTCGG 60.447 63.158 0.00 0.00 0.00 4.63
732 1067 1.447314 GGTTAACGGCAGTCTCGGG 60.447 63.158 0.00 0.00 0.00 5.14
733 1068 1.588082 GTTAACGGCAGTCTCGGGA 59.412 57.895 0.00 0.00 0.00 5.14
734 1069 0.458025 GTTAACGGCAGTCTCGGGAG 60.458 60.000 0.00 0.00 0.00 4.30
738 1073 4.459089 GGCAGTCTCGGGAGGTGC 62.459 72.222 10.57 10.57 37.77 5.01
783 1118 3.862845 GGTGTGTTTGCTTTGTACCTTTG 59.137 43.478 0.00 0.00 0.00 2.77
795 1130 4.630894 TGTACCTTTGAACTTTGCACTG 57.369 40.909 0.00 0.00 0.00 3.66
797 1132 3.782889 ACCTTTGAACTTTGCACTGAC 57.217 42.857 0.00 0.00 0.00 3.51
802 1137 6.040842 ACCTTTGAACTTTGCACTGACAATAT 59.959 34.615 0.00 0.00 0.00 1.28
804 1139 5.375417 TGAACTTTGCACTGACAATATGG 57.625 39.130 0.00 0.00 0.00 2.74
808 1143 4.584325 ACTTTGCACTGACAATATGGTTGT 59.416 37.500 0.00 0.00 34.97 3.32
812 1147 3.825308 CACTGACAATATGGTTGTGTGC 58.175 45.455 3.39 0.00 31.96 4.57
815 1160 1.468520 GACAATATGGTTGTGTGCGCT 59.531 47.619 9.73 0.00 31.96 5.92
838 1183 2.115266 CGGGGGTTGCTCCACTTT 59.885 61.111 1.25 0.00 40.09 2.66
839 1184 1.530655 CGGGGGTTGCTCCACTTTT 60.531 57.895 1.25 0.00 40.09 2.27
840 1185 1.524008 CGGGGGTTGCTCCACTTTTC 61.524 60.000 1.25 0.00 40.09 2.29
841 1186 1.185618 GGGGGTTGCTCCACTTTTCC 61.186 60.000 1.25 0.00 40.09 3.13
842 1187 1.524008 GGGGTTGCTCCACTTTTCCG 61.524 60.000 1.43 0.00 36.51 4.30
845 1190 1.886542 GGTTGCTCCACTTTTCCGAAT 59.113 47.619 0.00 0.00 35.97 3.34
928 1288 1.517832 CGAGCCGTCCCATCTTTCT 59.482 57.895 0.00 0.00 0.00 2.52
1146 1507 4.222847 GCCGACCCCCTGATCGTC 62.223 72.222 0.00 0.00 36.60 4.20
1171 1532 2.430921 CCGAAGTCGCGCTCACTT 60.431 61.111 18.49 18.49 36.77 3.16
1260 1621 1.984570 CTCCGCCCACTTCCTCTCA 60.985 63.158 0.00 0.00 0.00 3.27
1261 1622 1.535444 TCCGCCCACTTCCTCTCAA 60.535 57.895 0.00 0.00 0.00 3.02
1708 2069 4.695993 TGCTTGACGCCGGCATGA 62.696 61.111 28.98 0.34 38.05 3.07
1752 2113 2.512885 GTGCTGATGCGAGATTTTGTG 58.487 47.619 0.00 0.00 43.34 3.33
1756 2117 3.484886 GCTGATGCGAGATTTTGTGAGAC 60.485 47.826 0.00 0.00 0.00 3.36
1807 2168 1.794222 GACGAAATGCGAACCAGGG 59.206 57.895 0.00 0.00 44.57 4.45
1857 2218 1.547372 ACCTTGATTTCAGGCATGTGC 59.453 47.619 0.00 0.00 41.14 4.57
1886 2247 0.381089 GATCTGGACGGTGTAGACGG 59.619 60.000 0.00 0.00 35.23 4.79
2061 2422 3.093574 GTTCACAACATTGATCGATGCG 58.906 45.455 20.95 15.11 0.00 4.73
2077 2438 2.417257 GCGCATTGCAAGGATGGGA 61.417 57.895 16.56 0.00 45.45 4.37
2223 2584 2.044793 TTGTGGAAGAGATGAGGGGT 57.955 50.000 0.00 0.00 0.00 4.95
2273 2634 2.002586 CACCACACTCATCGATGGTTC 58.997 52.381 24.61 0.00 42.98 3.62
2298 2659 1.185618 AGGACGGCAAGCTAGACACA 61.186 55.000 0.00 0.00 0.00 3.72
2328 2689 5.009610 GGATATTAAGCAGAAAATGGCGGAA 59.990 40.000 0.00 0.00 34.54 4.30
2361 2722 3.981416 CGTTGGATGAGGTGACATATACG 59.019 47.826 0.00 0.00 0.00 3.06
2377 2738 4.899239 CGGCACTCATCTCCGGGC 62.899 72.222 0.00 0.00 39.52 6.13
2466 2827 1.067974 CCTGACAACACGACCTACACA 59.932 52.381 0.00 0.00 0.00 3.72
2741 3102 3.313526 TCTGAAGAGCTGAAAAGTGCAAC 59.686 43.478 0.00 0.00 0.00 4.17
2742 3103 2.358898 TGAAGAGCTGAAAAGTGCAACC 59.641 45.455 0.00 0.00 37.80 3.77
2975 3337 1.750930 CACTCCTCGATGGGGGATG 59.249 63.158 0.00 0.00 41.89 3.51
3237 3603 9.725019 AAATCATCGTAAGGCATATTCTATGAA 57.275 29.630 0.00 0.00 38.47 2.57
3320 3692 6.867293 CCTAGTTGTGGTAGAACAGTAACTTC 59.133 42.308 0.00 0.00 33.60 3.01
3425 3839 6.146898 GGACTTTTGCGCTAATTTCACTTTA 58.853 36.000 9.73 0.00 0.00 1.85
3426 3840 6.087687 GGACTTTTGCGCTAATTTCACTTTAC 59.912 38.462 9.73 0.00 0.00 2.01
3427 3841 6.735130 ACTTTTGCGCTAATTTCACTTTACT 58.265 32.000 9.73 0.00 0.00 2.24
3428 3842 7.200455 ACTTTTGCGCTAATTTCACTTTACTT 58.800 30.769 9.73 0.00 0.00 2.24
3429 3843 6.984740 TTTGCGCTAATTTCACTTTACTTG 57.015 33.333 9.73 0.00 0.00 3.16
3430 3844 5.933187 TGCGCTAATTTCACTTTACTTGA 57.067 34.783 9.73 0.00 0.00 3.02
3431 3845 5.685841 TGCGCTAATTTCACTTTACTTGAC 58.314 37.500 9.73 0.00 0.00 3.18
3736 4152 2.253452 GCAGAAGCAACAGCACCG 59.747 61.111 0.00 0.00 41.58 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 7.448469 AGCCTCAGTGTTCAACAAATATTAACT 59.552 33.333 0.00 0.00 0.00 2.24
172 173 7.593825 AGCCTCAGTGTTCAACAAATATTAAC 58.406 34.615 0.00 0.00 0.00 2.01
174 175 7.759489 AAGCCTCAGTGTTCAACAAATATTA 57.241 32.000 0.00 0.00 0.00 0.98
179 502 7.575414 TTATAAAGCCTCAGTGTTCAACAAA 57.425 32.000 0.00 0.00 0.00 2.83
185 508 9.860898 ATTTTTCATTATAAAGCCTCAGTGTTC 57.139 29.630 0.00 0.00 0.00 3.18
207 530 9.653287 TCGATCTAAACTCACATAGTGAATTTT 57.347 29.630 11.12 10.38 38.54 1.82
208 531 9.823647 ATCGATCTAAACTCACATAGTGAATTT 57.176 29.630 10.74 10.74 42.97 1.82
209 532 9.254133 CATCGATCTAAACTCACATAGTGAATT 57.746 33.333 0.00 0.00 42.26 2.17
211 534 7.068226 TCCATCGATCTAAACTCACATAGTGAA 59.932 37.037 0.00 0.00 42.26 3.18
213 536 6.739112 TCCATCGATCTAAACTCACATAGTG 58.261 40.000 0.00 0.00 38.88 2.74
214 537 6.961360 TCCATCGATCTAAACTCACATAGT 57.039 37.500 0.00 0.00 41.49 2.12
228 551 3.379240 CGCCATATCAGATCCATCGATC 58.621 50.000 0.00 0.00 44.65 3.69
229 552 2.102084 CCGCCATATCAGATCCATCGAT 59.898 50.000 0.00 0.00 0.00 3.59
231 554 1.931906 CCGCCATATCAGATCCATCG 58.068 55.000 0.00 0.00 0.00 3.84
232 555 1.661341 GCCGCCATATCAGATCCATC 58.339 55.000 0.00 0.00 0.00 3.51
235 558 2.103042 GCGCCGCCATATCAGATCC 61.103 63.158 0.00 0.00 0.00 3.36
236 559 0.742281 ATGCGCCGCCATATCAGATC 60.742 55.000 6.63 0.00 0.00 2.75
237 560 1.022982 CATGCGCCGCCATATCAGAT 61.023 55.000 6.63 0.00 0.00 2.90
239 562 0.670239 TACATGCGCCGCCATATCAG 60.670 55.000 6.63 0.00 0.00 2.90
241 564 0.652592 GATACATGCGCCGCCATATC 59.347 55.000 6.63 7.58 0.00 1.63
242 565 0.036483 TGATACATGCGCCGCCATAT 60.036 50.000 6.63 1.12 0.00 1.78
243 566 0.036483 ATGATACATGCGCCGCCATA 60.036 50.000 6.63 0.00 0.00 2.74
245 568 1.960763 GATGATACATGCGCCGCCA 60.961 57.895 6.63 0.00 0.00 5.69
246 569 2.680913 GGATGATACATGCGCCGCC 61.681 63.158 6.63 0.00 0.00 6.13
247 570 1.230635 AAGGATGATACATGCGCCGC 61.231 55.000 4.18 0.00 0.00 6.53
249 572 2.498167 AGAAAGGATGATACATGCGCC 58.502 47.619 4.18 0.00 0.00 6.53
250 573 3.561310 TCAAGAAAGGATGATACATGCGC 59.439 43.478 0.00 0.00 0.00 6.09
263 586 6.350110 TTCAAAGTGAACACCTTCAAGAAAGG 60.350 38.462 2.29 2.29 44.73 3.11
265 588 6.582677 TTCAAAGTGAACACCTTCAAGAAA 57.417 33.333 1.11 0.00 38.17 2.52
266 589 5.393027 GCTTCAAAGTGAACACCTTCAAGAA 60.393 40.000 4.58 0.00 38.17 2.52
267 590 4.096382 GCTTCAAAGTGAACACCTTCAAGA 59.904 41.667 4.58 0.00 38.17 3.02
268 591 4.142403 TGCTTCAAAGTGAACACCTTCAAG 60.142 41.667 1.11 0.00 38.17 3.02
269 592 3.761218 TGCTTCAAAGTGAACACCTTCAA 59.239 39.130 1.11 0.00 38.17 2.69
270 593 3.351740 TGCTTCAAAGTGAACACCTTCA 58.648 40.909 1.11 0.00 32.21 3.02
271 594 4.370364 TTGCTTCAAAGTGAACACCTTC 57.630 40.909 1.11 0.00 32.21 3.46
272 595 4.402155 TCATTGCTTCAAAGTGAACACCTT 59.598 37.500 1.11 0.00 32.21 3.50
273 596 3.953612 TCATTGCTTCAAAGTGAACACCT 59.046 39.130 1.11 0.00 32.21 4.00
274 597 4.305989 TCATTGCTTCAAAGTGAACACC 57.694 40.909 1.11 0.00 32.21 4.16
275 598 5.400485 GTCATCATTGCTTCAAAGTGAACAC 59.600 40.000 0.00 0.00 32.21 3.32
276 599 5.067544 TGTCATCATTGCTTCAAAGTGAACA 59.932 36.000 0.00 0.00 32.21 3.18
277 600 5.400485 GTGTCATCATTGCTTCAAAGTGAAC 59.600 40.000 0.00 0.00 32.21 3.18
278 601 5.067544 TGTGTCATCATTGCTTCAAAGTGAA 59.932 36.000 0.00 0.00 34.79 3.18
279 602 4.579753 TGTGTCATCATTGCTTCAAAGTGA 59.420 37.500 0.00 0.00 0.00 3.41
280 603 4.862350 TGTGTCATCATTGCTTCAAAGTG 58.138 39.130 0.00 0.00 0.00 3.16
281 604 5.010314 ACATGTGTCATCATTGCTTCAAAGT 59.990 36.000 0.00 0.00 0.00 2.66
282 605 5.466819 ACATGTGTCATCATTGCTTCAAAG 58.533 37.500 0.00 0.00 0.00 2.77
283 606 5.456548 ACATGTGTCATCATTGCTTCAAA 57.543 34.783 0.00 0.00 0.00 2.69
284 607 5.456548 AACATGTGTCATCATTGCTTCAA 57.543 34.783 0.00 0.00 0.00 2.69
285 608 5.456548 AAACATGTGTCATCATTGCTTCA 57.543 34.783 0.00 0.00 0.00 3.02
286 609 6.089016 CAGAAAACATGTGTCATCATTGCTTC 59.911 38.462 0.00 0.00 0.00 3.86
287 610 5.924254 CAGAAAACATGTGTCATCATTGCTT 59.076 36.000 0.00 0.00 0.00 3.91
288 611 5.242171 TCAGAAAACATGTGTCATCATTGCT 59.758 36.000 0.00 0.00 0.00 3.91
289 612 5.463286 TCAGAAAACATGTGTCATCATTGC 58.537 37.500 0.00 0.00 0.00 3.56
290 613 7.114388 CACTTCAGAAAACATGTGTCATCATTG 59.886 37.037 0.00 0.00 0.00 2.82
291 614 7.013559 TCACTTCAGAAAACATGTGTCATCATT 59.986 33.333 0.00 0.00 0.00 2.57
292 615 6.487668 TCACTTCAGAAAACATGTGTCATCAT 59.512 34.615 0.00 0.00 0.00 2.45
293 616 5.821995 TCACTTCAGAAAACATGTGTCATCA 59.178 36.000 0.00 0.00 0.00 3.07
294 617 6.304356 TCACTTCAGAAAACATGTGTCATC 57.696 37.500 0.00 0.00 0.00 2.92
295 618 6.487668 TGATCACTTCAGAAAACATGTGTCAT 59.512 34.615 0.00 0.00 0.00 3.06
296 619 5.821995 TGATCACTTCAGAAAACATGTGTCA 59.178 36.000 0.00 0.00 0.00 3.58
297 620 6.304356 TGATCACTTCAGAAAACATGTGTC 57.696 37.500 0.00 0.00 0.00 3.67
298 621 6.698008 TTGATCACTTCAGAAAACATGTGT 57.302 33.333 0.00 0.00 35.27 3.72
299 622 7.043192 GGTTTTGATCACTTCAGAAAACATGTG 60.043 37.037 15.25 0.00 37.03 3.21
300 623 6.980397 GGTTTTGATCACTTCAGAAAACATGT 59.020 34.615 15.25 0.00 37.03 3.21
301 624 6.421801 GGGTTTTGATCACTTCAGAAAACATG 59.578 38.462 15.25 0.00 37.03 3.21
302 625 6.324770 AGGGTTTTGATCACTTCAGAAAACAT 59.675 34.615 15.25 2.86 37.03 2.71
303 626 5.656416 AGGGTTTTGATCACTTCAGAAAACA 59.344 36.000 15.25 0.00 37.03 2.83
304 627 6.149129 AGGGTTTTGATCACTTCAGAAAAC 57.851 37.500 0.00 1.48 35.61 2.43
305 628 5.890985 TGAGGGTTTTGATCACTTCAGAAAA 59.109 36.000 0.00 0.00 35.27 2.29
306 629 5.445069 TGAGGGTTTTGATCACTTCAGAAA 58.555 37.500 0.00 0.00 35.27 2.52
307 630 5.047566 TGAGGGTTTTGATCACTTCAGAA 57.952 39.130 0.00 0.00 35.27 3.02
308 631 4.705110 TGAGGGTTTTGATCACTTCAGA 57.295 40.909 0.00 0.00 35.27 3.27
309 632 5.972107 ATTGAGGGTTTTGATCACTTCAG 57.028 39.130 0.00 0.00 35.27 3.02
310 633 6.947733 ACATATTGAGGGTTTTGATCACTTCA 59.052 34.615 0.00 0.00 0.00 3.02
311 634 7.253422 CACATATTGAGGGTTTTGATCACTTC 58.747 38.462 0.00 0.00 0.00 3.01
312 635 6.350445 GCACATATTGAGGGTTTTGATCACTT 60.350 38.462 0.00 0.00 0.00 3.16
313 636 5.126061 GCACATATTGAGGGTTTTGATCACT 59.874 40.000 0.00 0.00 0.00 3.41
314 637 5.126061 AGCACATATTGAGGGTTTTGATCAC 59.874 40.000 0.00 0.00 0.00 3.06
315 638 5.263599 AGCACATATTGAGGGTTTTGATCA 58.736 37.500 0.00 0.00 0.00 2.92
316 639 5.841957 AGCACATATTGAGGGTTTTGATC 57.158 39.130 0.00 0.00 0.00 2.92
317 640 6.426587 AGTAGCACATATTGAGGGTTTTGAT 58.573 36.000 0.00 0.00 0.00 2.57
318 641 5.815581 AGTAGCACATATTGAGGGTTTTGA 58.184 37.500 0.00 0.00 0.00 2.69
319 642 5.066505 GGAGTAGCACATATTGAGGGTTTTG 59.933 44.000 0.00 0.00 0.00 2.44
320 643 5.193679 GGAGTAGCACATATTGAGGGTTTT 58.806 41.667 0.00 0.00 0.00 2.43
321 644 4.227300 TGGAGTAGCACATATTGAGGGTTT 59.773 41.667 0.00 0.00 0.00 3.27
322 645 3.780294 TGGAGTAGCACATATTGAGGGTT 59.220 43.478 0.00 0.00 0.00 4.11
323 646 3.384168 TGGAGTAGCACATATTGAGGGT 58.616 45.455 0.00 0.00 0.00 4.34
324 647 4.422073 TTGGAGTAGCACATATTGAGGG 57.578 45.455 0.00 0.00 0.00 4.30
325 648 7.716998 AGTTAATTGGAGTAGCACATATTGAGG 59.283 37.037 0.00 0.00 0.00 3.86
326 649 8.668510 AGTTAATTGGAGTAGCACATATTGAG 57.331 34.615 0.00 0.00 0.00 3.02
330 653 9.003658 GCAATAGTTAATTGGAGTAGCACATAT 57.996 33.333 0.38 0.00 44.45 1.78
331 654 8.210946 AGCAATAGTTAATTGGAGTAGCACATA 58.789 33.333 0.38 0.00 44.45 2.29
332 655 7.056635 AGCAATAGTTAATTGGAGTAGCACAT 58.943 34.615 0.38 0.00 44.45 3.21
333 656 6.414732 AGCAATAGTTAATTGGAGTAGCACA 58.585 36.000 0.38 0.00 44.45 4.57
334 657 6.927294 AGCAATAGTTAATTGGAGTAGCAC 57.073 37.500 0.38 0.00 44.45 4.40
335 658 7.926555 GTCTAGCAATAGTTAATTGGAGTAGCA 59.073 37.037 0.38 0.00 44.45 3.49
336 659 7.926555 TGTCTAGCAATAGTTAATTGGAGTAGC 59.073 37.037 0.38 0.00 44.45 3.58
337 660 9.817809 TTGTCTAGCAATAGTTAATTGGAGTAG 57.182 33.333 0.38 0.00 44.45 2.57
351 674 6.223852 GCCTAGCAACTATTGTCTAGCAATA 58.776 40.000 14.71 14.71 45.26 1.90
353 676 4.442706 GCCTAGCAACTATTGTCTAGCAA 58.557 43.478 11.41 2.73 41.89 3.91
354 677 3.181465 GGCCTAGCAACTATTGTCTAGCA 60.181 47.826 0.00 0.00 36.72 3.49
355 678 3.070302 AGGCCTAGCAACTATTGTCTAGC 59.930 47.826 1.29 0.00 36.72 3.42
356 679 4.946478 AGGCCTAGCAACTATTGTCTAG 57.054 45.455 1.29 10.52 37.25 2.43
357 680 4.714802 TGAAGGCCTAGCAACTATTGTCTA 59.285 41.667 5.16 0.00 0.00 2.59
358 681 3.519510 TGAAGGCCTAGCAACTATTGTCT 59.480 43.478 5.16 0.00 0.00 3.41
359 682 3.873910 TGAAGGCCTAGCAACTATTGTC 58.126 45.455 5.16 0.00 0.00 3.18
360 683 4.263506 ACTTGAAGGCCTAGCAACTATTGT 60.264 41.667 5.16 5.06 0.00 2.71
361 684 4.265073 ACTTGAAGGCCTAGCAACTATTG 58.735 43.478 5.16 4.41 0.00 1.90
362 685 4.576330 ACTTGAAGGCCTAGCAACTATT 57.424 40.909 5.16 0.00 0.00 1.73
363 686 4.469945 TGTACTTGAAGGCCTAGCAACTAT 59.530 41.667 5.16 3.24 0.00 2.12
364 687 3.835978 TGTACTTGAAGGCCTAGCAACTA 59.164 43.478 5.16 4.73 0.00 2.24
365 688 2.637872 TGTACTTGAAGGCCTAGCAACT 59.362 45.455 5.16 5.72 0.00 3.16
366 689 3.053831 TGTACTTGAAGGCCTAGCAAC 57.946 47.619 5.16 3.81 0.00 4.17
367 690 3.326588 TCTTGTACTTGAAGGCCTAGCAA 59.673 43.478 5.16 13.35 0.00 3.91
368 691 2.903784 TCTTGTACTTGAAGGCCTAGCA 59.096 45.455 5.16 4.57 0.00 3.49
369 692 3.611766 TCTTGTACTTGAAGGCCTAGC 57.388 47.619 5.16 1.17 0.00 3.42
370 693 8.738645 ATATTTTCTTGTACTTGAAGGCCTAG 57.261 34.615 5.16 1.51 0.00 3.02
371 694 9.832445 CTATATTTTCTTGTACTTGAAGGCCTA 57.168 33.333 5.16 0.00 0.00 3.93
372 695 8.329502 ACTATATTTTCTTGTACTTGAAGGCCT 58.670 33.333 0.00 0.00 0.00 5.19
373 696 8.507524 ACTATATTTTCTTGTACTTGAAGGCC 57.492 34.615 0.00 0.00 0.00 5.19
379 702 9.901172 ACCCCTTACTATATTTTCTTGTACTTG 57.099 33.333 0.00 0.00 0.00 3.16
386 709 9.404848 GCAAGTTACCCCTTACTATATTTTCTT 57.595 33.333 0.00 0.00 0.00 2.52
387 710 7.997223 GGCAAGTTACCCCTTACTATATTTTCT 59.003 37.037 0.00 0.00 0.00 2.52
388 711 7.230108 GGGCAAGTTACCCCTTACTATATTTTC 59.770 40.741 0.00 0.00 42.01 2.29
389 712 7.064866 GGGCAAGTTACCCCTTACTATATTTT 58.935 38.462 0.00 0.00 42.01 1.82
390 713 6.607970 GGGCAAGTTACCCCTTACTATATTT 58.392 40.000 0.00 0.00 42.01 1.40
391 714 6.196918 GGGCAAGTTACCCCTTACTATATT 57.803 41.667 0.00 0.00 42.01 1.28
392 715 5.837770 GGGCAAGTTACCCCTTACTATAT 57.162 43.478 0.00 0.00 42.01 0.86
403 726 3.008704 TCTCAACTAAGGGGCAAGTTACC 59.991 47.826 0.00 0.00 34.23 2.85
404 727 4.281898 TCTCAACTAAGGGGCAAGTTAC 57.718 45.455 0.00 0.00 34.23 2.50
405 728 4.986054 TTCTCAACTAAGGGGCAAGTTA 57.014 40.909 0.00 0.00 34.23 2.24
406 729 3.876309 TTCTCAACTAAGGGGCAAGTT 57.124 42.857 0.00 0.00 36.38 2.66
407 730 3.117663 TGTTTCTCAACTAAGGGGCAAGT 60.118 43.478 0.00 0.00 33.58 3.16
408 731 3.486383 TGTTTCTCAACTAAGGGGCAAG 58.514 45.455 0.00 0.00 33.58 4.01
409 732 3.137544 TCTGTTTCTCAACTAAGGGGCAA 59.862 43.478 0.00 0.00 33.58 4.52
410 733 2.708861 TCTGTTTCTCAACTAAGGGGCA 59.291 45.455 0.00 0.00 33.58 5.36
411 734 3.339141 CTCTGTTTCTCAACTAAGGGGC 58.661 50.000 0.00 0.00 33.58 5.80
412 735 3.328050 ACCTCTGTTTCTCAACTAAGGGG 59.672 47.826 9.63 0.00 38.57 4.79
413 736 4.625607 ACCTCTGTTTCTCAACTAAGGG 57.374 45.455 9.63 0.00 38.57 3.95
414 737 7.982354 CCTAATACCTCTGTTTCTCAACTAAGG 59.018 40.741 0.00 0.00 39.43 2.69
415 738 7.492994 GCCTAATACCTCTGTTTCTCAACTAAG 59.507 40.741 0.00 0.00 33.58 2.18
416 739 7.180408 AGCCTAATACCTCTGTTTCTCAACTAA 59.820 37.037 0.00 0.00 33.58 2.24
417 740 6.668283 AGCCTAATACCTCTGTTTCTCAACTA 59.332 38.462 0.00 0.00 33.58 2.24
418 741 5.485708 AGCCTAATACCTCTGTTTCTCAACT 59.514 40.000 0.00 0.00 33.58 3.16
419 742 5.735766 AGCCTAATACCTCTGTTTCTCAAC 58.264 41.667 0.00 0.00 0.00 3.18
420 743 6.439375 TGTAGCCTAATACCTCTGTTTCTCAA 59.561 38.462 0.00 0.00 0.00 3.02
421 744 5.955959 TGTAGCCTAATACCTCTGTTTCTCA 59.044 40.000 0.00 0.00 0.00 3.27
422 745 6.097129 AGTGTAGCCTAATACCTCTGTTTCTC 59.903 42.308 0.00 0.00 0.00 2.87
423 746 5.958987 AGTGTAGCCTAATACCTCTGTTTCT 59.041 40.000 0.00 0.00 0.00 2.52
424 747 6.223351 AGTGTAGCCTAATACCTCTGTTTC 57.777 41.667 0.00 0.00 0.00 2.78
425 748 6.212791 TGAAGTGTAGCCTAATACCTCTGTTT 59.787 38.462 0.00 0.00 0.00 2.83
426 749 5.720041 TGAAGTGTAGCCTAATACCTCTGTT 59.280 40.000 0.00 0.00 0.00 3.16
427 750 5.127356 GTGAAGTGTAGCCTAATACCTCTGT 59.873 44.000 0.00 0.00 0.00 3.41
428 751 5.361285 AGTGAAGTGTAGCCTAATACCTCTG 59.639 44.000 0.00 0.00 0.00 3.35
429 752 5.520751 AGTGAAGTGTAGCCTAATACCTCT 58.479 41.667 0.00 0.00 0.00 3.69
430 753 5.855740 AGTGAAGTGTAGCCTAATACCTC 57.144 43.478 0.00 0.00 0.00 3.85
431 754 6.192773 TGTAGTGAAGTGTAGCCTAATACCT 58.807 40.000 0.00 0.00 0.00 3.08
432 755 6.461110 TGTAGTGAAGTGTAGCCTAATACC 57.539 41.667 0.00 0.00 0.00 2.73
433 756 8.943909 AATTGTAGTGAAGTGTAGCCTAATAC 57.056 34.615 0.00 0.00 0.00 1.89
435 758 9.953565 TTTAATTGTAGTGAAGTGTAGCCTAAT 57.046 29.630 0.00 0.00 0.00 1.73
436 759 9.781633 TTTTAATTGTAGTGAAGTGTAGCCTAA 57.218 29.630 0.00 0.00 0.00 2.69
437 760 9.431887 CTTTTAATTGTAGTGAAGTGTAGCCTA 57.568 33.333 0.00 0.00 0.00 3.93
438 761 7.937394 ACTTTTAATTGTAGTGAAGTGTAGCCT 59.063 33.333 0.00 0.00 0.00 4.58
439 762 8.095937 ACTTTTAATTGTAGTGAAGTGTAGCC 57.904 34.615 0.00 0.00 0.00 3.93
440 763 8.989980 AGACTTTTAATTGTAGTGAAGTGTAGC 58.010 33.333 0.00 0.00 0.00 3.58
443 766 8.989980 GCTAGACTTTTAATTGTAGTGAAGTGT 58.010 33.333 0.00 0.00 0.00 3.55
444 767 8.443937 GGCTAGACTTTTAATTGTAGTGAAGTG 58.556 37.037 0.00 0.00 0.00 3.16
445 768 8.154856 TGGCTAGACTTTTAATTGTAGTGAAGT 58.845 33.333 0.00 0.00 0.00 3.01
446 769 8.547967 TGGCTAGACTTTTAATTGTAGTGAAG 57.452 34.615 0.00 0.00 0.00 3.02
447 770 9.162764 GATGGCTAGACTTTTAATTGTAGTGAA 57.837 33.333 0.00 0.00 0.00 3.18
448 771 8.540388 AGATGGCTAGACTTTTAATTGTAGTGA 58.460 33.333 0.00 0.00 0.00 3.41
449 772 8.723942 AGATGGCTAGACTTTTAATTGTAGTG 57.276 34.615 0.00 0.00 0.00 2.74
453 776 9.905713 TGAATAGATGGCTAGACTTTTAATTGT 57.094 29.630 0.00 0.00 0.00 2.71
455 778 9.061435 GCTGAATAGATGGCTAGACTTTTAATT 57.939 33.333 0.00 0.00 0.00 1.40
456 779 8.213679 TGCTGAATAGATGGCTAGACTTTTAAT 58.786 33.333 0.00 0.00 0.00 1.40
457 780 7.564793 TGCTGAATAGATGGCTAGACTTTTAA 58.435 34.615 0.00 0.00 0.00 1.52
458 781 7.069950 TCTGCTGAATAGATGGCTAGACTTTTA 59.930 37.037 0.00 0.00 0.00 1.52
459 782 5.994250 TGCTGAATAGATGGCTAGACTTTT 58.006 37.500 0.00 0.00 0.00 2.27
460 783 5.365025 TCTGCTGAATAGATGGCTAGACTTT 59.635 40.000 0.00 0.00 0.00 2.66
461 784 4.898265 TCTGCTGAATAGATGGCTAGACTT 59.102 41.667 0.00 0.00 0.00 3.01
462 785 4.478203 TCTGCTGAATAGATGGCTAGACT 58.522 43.478 0.00 0.00 0.00 3.24
463 786 4.862902 TCTGCTGAATAGATGGCTAGAC 57.137 45.455 0.00 0.00 0.00 2.59
464 787 6.488715 TCTATCTGCTGAATAGATGGCTAGA 58.511 40.000 0.00 0.00 36.38 2.43
465 788 6.772360 TCTATCTGCTGAATAGATGGCTAG 57.228 41.667 0.00 0.00 36.38 3.42
466 789 7.110043 CATCTATCTGCTGAATAGATGGCTA 57.890 40.000 25.20 5.48 45.03 3.93
467 790 5.979993 CATCTATCTGCTGAATAGATGGCT 58.020 41.667 25.20 5.54 45.03 4.75
470 793 6.107343 CACCCATCTATCTGCTGAATAGATG 58.893 44.000 25.53 25.53 46.80 2.90
471 794 5.338219 GCACCCATCTATCTGCTGAATAGAT 60.338 44.000 14.23 14.23 37.93 1.98
472 795 4.020751 GCACCCATCTATCTGCTGAATAGA 60.021 45.833 0.00 6.35 0.00 1.98
480 803 0.879765 GCATGCACCCATCTATCTGC 59.120 55.000 14.21 0.00 0.00 4.26
509 832 4.443598 GGCACCCAGTCTATTTTCTCTAGG 60.444 50.000 0.00 0.00 0.00 3.02
519 842 0.469917 CCGATTGGCACCCAGTCTAT 59.530 55.000 5.42 0.00 37.98 1.98
540 863 1.052124 CCCCAATCGGCCCACTACTA 61.052 60.000 0.00 0.00 0.00 1.82
610 937 1.340399 CCTACTGCTGATGGCCTCCA 61.340 60.000 3.32 0.15 40.92 3.86
611 938 1.449353 CCTACTGCTGATGGCCTCC 59.551 63.158 3.32 0.00 40.92 4.30
612 939 1.227793 GCCTACTGCTGATGGCCTC 60.228 63.158 3.32 0.00 39.49 4.70
613 940 2.914289 GCCTACTGCTGATGGCCT 59.086 61.111 3.32 0.00 39.49 5.19
616 943 0.254178 AGTTGGCCTACTGCTGATGG 59.746 55.000 19.55 0.01 40.92 3.51
617 944 1.376543 CAGTTGGCCTACTGCTGATG 58.623 55.000 30.01 10.54 39.12 3.07
618 945 0.254178 CCAGTTGGCCTACTGCTGAT 59.746 55.000 33.80 5.31 43.31 2.90
625 952 7.885009 TTTTAATATTACCCAGTTGGCCTAC 57.115 36.000 9.54 9.54 37.83 3.18
700 1035 5.163602 TGCCGTTAACCCAGCTAATATTTTG 60.164 40.000 0.00 0.00 0.00 2.44
705 1040 2.502538 ACTGCCGTTAACCCAGCTAATA 59.497 45.455 16.62 0.00 0.00 0.98
712 1047 1.290955 CGAGACTGCCGTTAACCCA 59.709 57.895 0.00 0.00 0.00 4.51
713 1048 1.447314 CCGAGACTGCCGTTAACCC 60.447 63.158 0.00 0.00 0.00 4.11
714 1049 1.447314 CCCGAGACTGCCGTTAACC 60.447 63.158 0.00 0.00 0.00 2.85
715 1050 0.458025 CTCCCGAGACTGCCGTTAAC 60.458 60.000 0.00 0.00 0.00 2.01
716 1051 1.601419 CCTCCCGAGACTGCCGTTAA 61.601 60.000 0.00 0.00 0.00 2.01
717 1052 2.050350 CCTCCCGAGACTGCCGTTA 61.050 63.158 0.00 0.00 0.00 3.18
718 1053 3.382832 CCTCCCGAGACTGCCGTT 61.383 66.667 0.00 0.00 0.00 4.44
719 1054 4.680537 ACCTCCCGAGACTGCCGT 62.681 66.667 0.00 0.00 0.00 5.68
720 1055 4.135153 CACCTCCCGAGACTGCCG 62.135 72.222 0.00 0.00 0.00 5.69
721 1056 4.459089 GCACCTCCCGAGACTGCC 62.459 72.222 0.00 0.00 0.00 4.85
722 1057 3.386237 AGCACCTCCCGAGACTGC 61.386 66.667 6.33 6.33 34.24 4.40
723 1058 1.979155 TCAGCACCTCCCGAGACTG 60.979 63.158 0.00 0.00 0.00 3.51
724 1059 1.979693 GTCAGCACCTCCCGAGACT 60.980 63.158 0.00 0.00 0.00 3.24
725 1060 2.574399 GTCAGCACCTCCCGAGAC 59.426 66.667 0.00 0.00 0.00 3.36
726 1061 3.062466 CGTCAGCACCTCCCGAGA 61.062 66.667 0.00 0.00 0.00 4.04
727 1062 4.803426 GCGTCAGCACCTCCCGAG 62.803 72.222 0.00 0.00 44.35 4.63
730 1065 4.803426 CTCGCGTCAGCACCTCCC 62.803 72.222 5.77 0.00 45.49 4.30
731 1066 4.803426 CCTCGCGTCAGCACCTCC 62.803 72.222 5.77 0.00 45.49 4.30
732 1067 2.005960 ATACCTCGCGTCAGCACCTC 62.006 60.000 5.77 0.00 45.49 3.85
733 1068 1.605058 AATACCTCGCGTCAGCACCT 61.605 55.000 5.77 0.00 45.49 4.00
734 1069 1.146358 GAATACCTCGCGTCAGCACC 61.146 60.000 5.77 0.00 45.49 5.01
738 1073 1.944676 GCCGAATACCTCGCGTCAG 60.945 63.158 5.77 0.00 46.71 3.51
745 1080 1.207329 ACACCTGAAGCCGAATACCTC 59.793 52.381 0.00 0.00 0.00 3.85
783 1118 5.376854 ACCATATTGTCAGTGCAAAGTTC 57.623 39.130 0.00 0.00 31.63 3.01
795 1130 1.468520 AGCGCACACAACCATATTGTC 59.531 47.619 11.47 0.00 0.00 3.18
797 1132 1.468127 TCAGCGCACACAACCATATTG 59.532 47.619 11.47 0.00 0.00 1.90
802 1137 2.591429 CCTCAGCGCACACAACCA 60.591 61.111 11.47 0.00 0.00 3.67
804 1139 4.030452 GGCCTCAGCGCACACAAC 62.030 66.667 11.47 0.00 41.24 3.32
826 1171 4.759516 TTATTCGGAAAAGTGGAGCAAC 57.240 40.909 0.00 0.00 0.00 4.17
865 1210 5.411781 GGAACAGTCGATCAATCTTACTGT 58.588 41.667 16.23 16.23 45.44 3.55
897 1257 0.736325 CGGCTCGGTCGATCAAACTT 60.736 55.000 0.00 0.00 29.41 2.66
900 1260 1.153901 GACGGCTCGGTCGATCAAA 60.154 57.895 4.93 0.00 33.65 2.69
928 1288 1.079405 CTTCGAGCCCGCCAAGTTA 60.079 57.895 0.00 0.00 35.37 2.24
1063 1424 1.236026 TACCATGGGAGAGGGGAGGT 61.236 60.000 18.09 0.00 0.00 3.85
1260 1621 2.680370 GGGGTTGGAGCGGAGGATT 61.680 63.158 0.00 0.00 0.00 3.01
1261 1622 3.090532 GGGGTTGGAGCGGAGGAT 61.091 66.667 0.00 0.00 0.00 3.24
1752 2113 0.603569 TCGCAAGGTCTCCAAGTCTC 59.396 55.000 0.00 0.00 38.47 3.36
1756 2117 1.294659 GCACTCGCAAGGTCTCCAAG 61.295 60.000 0.00 0.00 38.36 3.61
1886 2247 1.376609 CGCCATTCCCTTGTACAGCC 61.377 60.000 0.00 0.00 0.00 4.85
2061 2422 1.483415 ACATTCCCATCCTTGCAATGC 59.517 47.619 0.00 0.00 0.00 3.56
2077 2438 2.042162 AGTCCATTCCAGCCTTCACATT 59.958 45.455 0.00 0.00 0.00 2.71
2158 2519 1.883021 CCCGACAAAGCCCATTCAC 59.117 57.895 0.00 0.00 0.00 3.18
2245 2606 3.509967 TCGATGAGTGTGGTGTAAGTCAT 59.490 43.478 0.00 0.00 38.80 3.06
2273 2634 2.803155 TAGCTTGCCGTCCTTGCAGG 62.803 60.000 0.00 0.00 40.35 4.85
2298 2659 6.072286 CCATTTTCTGCTTAATATCCATCGCT 60.072 38.462 0.00 0.00 0.00 4.93
2328 2689 1.347707 TCATCCAACGCAACCTCTTCT 59.652 47.619 0.00 0.00 0.00 2.85
2361 2722 3.474570 AGCCCGGAGATGAGTGCC 61.475 66.667 0.73 0.00 0.00 5.01
2377 2738 2.435586 CCGTCCTGCCTTGCTCAG 60.436 66.667 0.00 0.00 0.00 3.35
2466 2827 2.086869 CAGAAGGCGTCAATCACCATT 58.913 47.619 2.69 0.00 0.00 3.16
2741 3102 1.135024 CAAAATCTGGCACCATTCCGG 60.135 52.381 0.00 0.00 42.50 5.14
2742 3103 1.135024 CCAAAATCTGGCACCATTCCG 60.135 52.381 0.00 0.00 38.76 4.30
2865 3226 3.053842 AGACCGATGGTTCTCTACTGGTA 60.054 47.826 0.00 0.00 35.25 3.25
3177 3541 1.202330 ATCAACCCAGCCTGAGAGAG 58.798 55.000 0.00 0.00 0.00 3.20
3178 3542 2.292521 ACTATCAACCCAGCCTGAGAGA 60.293 50.000 0.00 0.00 35.06 3.10
3320 3692 5.368523 TGGGACTCTATGGGTAAACTTATGG 59.631 44.000 0.00 0.00 0.00 2.74
3334 3706 5.957771 TTTTATGCAGACTGGGACTCTAT 57.042 39.130 4.26 0.00 0.00 1.98
3335 3707 5.488341 GTTTTTATGCAGACTGGGACTCTA 58.512 41.667 4.26 0.00 0.00 2.43
3425 3839 5.722263 CTGAACTGAGATGAGATGTCAAGT 58.278 41.667 0.00 0.00 35.88 3.16
3426 3840 4.567558 GCTGAACTGAGATGAGATGTCAAG 59.432 45.833 0.00 0.00 35.88 3.02
3427 3841 4.222366 AGCTGAACTGAGATGAGATGTCAA 59.778 41.667 0.00 0.00 35.88 3.18
3428 3842 3.768215 AGCTGAACTGAGATGAGATGTCA 59.232 43.478 0.00 0.00 37.02 3.58
3429 3843 4.389890 AGCTGAACTGAGATGAGATGTC 57.610 45.455 0.00 0.00 0.00 3.06
3430 3844 4.822685 AAGCTGAACTGAGATGAGATGT 57.177 40.909 0.00 0.00 0.00 3.06
3431 3845 5.658468 TGTAAGCTGAACTGAGATGAGATG 58.342 41.667 0.00 0.00 0.00 2.90
3596 4012 7.765360 AGATGTGAATTTGCTTCTTTGAACAAA 59.235 29.630 0.17 0.17 36.53 2.83
3736 4152 4.216687 AGCGCTGTCCAGACTACTATTATC 59.783 45.833 10.39 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.