Multiple sequence alignment - TraesCS2D01G322900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G322900 chr2D 100.000 3471 0 0 1 3471 414954071 414957541 0.000000e+00 6410
1 TraesCS2D01G322900 chr2D 88.391 758 53 14 2716 3462 416390040 416390773 0.000000e+00 880
2 TraesCS2D01G322900 chr2D 92.141 369 26 3 1 367 567647464 567647831 5.140000e-143 518
3 TraesCS2D01G322900 chr2D 90.253 277 20 4 2142 2417 414961702 414961972 4.260000e-94 355
4 TraesCS2D01G322900 chr2D 88.506 261 11 6 2351 2609 414961971 414962214 7.280000e-77 298
5 TraesCS2D01G322900 chr2A 95.503 2980 94 21 518 3471 581940633 581943598 0.000000e+00 4724
6 TraesCS2D01G322900 chr2A 91.361 463 31 6 2142 2601 581962506 581962962 2.940000e-175 625
7 TraesCS2D01G322900 chr2B 94.978 2728 66 29 560 3236 488191383 488194090 0.000000e+00 4213
8 TraesCS2D01G322900 chr2B 96.698 212 7 0 3260 3471 488194081 488194292 1.530000e-93 353
9 TraesCS2D01G322900 chr2B 85.878 262 19 9 449 707 488045871 488046117 2.660000e-66 263
10 TraesCS2D01G322900 chr3B 92.162 370 26 3 1 367 13118514 13118145 1.430000e-143 520
11 TraesCS2D01G322900 chr6A 93.043 345 21 3 1 343 150850156 150850499 5.170000e-138 501
12 TraesCS2D01G322900 chr3D 90.909 374 23 7 1 365 73451354 73451725 3.110000e-135 492
13 TraesCS2D01G322900 chr3D 90.691 376 26 3 1 367 109742999 109742624 3.110000e-135 492
14 TraesCS2D01G322900 chr5D 91.281 367 21 7 1 365 544720819 544720462 1.120000e-134 490
15 TraesCS2D01G322900 chr6D 90.374 374 26 6 1 365 19824637 19824265 1.870000e-132 483
16 TraesCS2D01G322900 chr1D 89.947 378 28 4 1 369 491691995 491692371 2.420000e-131 479
17 TraesCS2D01G322900 chr7D 89.920 377 28 3 1 368 91556085 91555710 8.720000e-131 477
18 TraesCS2D01G322900 chr5A 83.224 459 74 2 1965 2420 663305687 663306145 5.360000e-113 418
19 TraesCS2D01G322900 chr4D 83.224 459 74 2 1965 2420 483138290 483138748 5.360000e-113 418
20 TraesCS2D01G322900 chr4B 83.224 459 74 2 1965 2420 613375728 613376186 5.360000e-113 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G322900 chr2D 414954071 414957541 3470 False 6410.0 6410 100.0000 1 3471 1 chr2D.!!$F1 3470
1 TraesCS2D01G322900 chr2D 416390040 416390773 733 False 880.0 880 88.3910 2716 3462 1 chr2D.!!$F2 746
2 TraesCS2D01G322900 chr2D 414961702 414962214 512 False 326.5 355 89.3795 2142 2609 2 chr2D.!!$F4 467
3 TraesCS2D01G322900 chr2A 581940633 581943598 2965 False 4724.0 4724 95.5030 518 3471 1 chr2A.!!$F1 2953
4 TraesCS2D01G322900 chr2B 488191383 488194292 2909 False 2283.0 4213 95.8380 560 3471 2 chr2B.!!$F2 2911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 335 0.030638 CCAGGGGCGATTTTTATGCG 59.969 55.000 0.0 0.00 0.00 4.73 F
1051 1083 0.107654 GCCACTCCAGGTATGTCCAC 60.108 60.000 0.0 0.00 39.02 4.02 F
2318 2377 1.154263 CTCGTGTCCGTCGACTTCC 60.154 63.158 14.7 1.12 39.94 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2016 0.179023 TTGATGATGCCTGCGCCATA 60.179 50.000 4.18 0.0 0.00 2.74 R
2371 2491 0.038618 TGACCTTGACCATGTCGTCG 60.039 55.000 0.00 0.0 34.95 5.12 R
3179 3318 2.039613 TGGTCTGTGCATTGTATGGTCA 59.960 45.455 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.545481 GGCGCGACGTGTGATGAG 61.545 66.667 12.10 0.00 0.00 2.90
36 37 2.805353 GCGCGACGTGTGATGAGT 60.805 61.111 12.10 0.00 0.00 3.41
37 38 2.372690 GCGCGACGTGTGATGAGTT 61.373 57.895 12.10 0.00 0.00 3.01
38 39 1.886861 GCGCGACGTGTGATGAGTTT 61.887 55.000 12.10 0.00 0.00 2.66
39 40 0.506932 CGCGACGTGTGATGAGTTTT 59.493 50.000 0.00 0.00 0.00 2.43
40 41 1.070843 CGCGACGTGTGATGAGTTTTT 60.071 47.619 0.00 0.00 0.00 1.94
41 42 2.154198 CGCGACGTGTGATGAGTTTTTA 59.846 45.455 0.00 0.00 0.00 1.52
42 43 3.181534 CGCGACGTGTGATGAGTTTTTAT 60.182 43.478 0.00 0.00 0.00 1.40
43 44 4.665645 CGCGACGTGTGATGAGTTTTTATT 60.666 41.667 0.00 0.00 0.00 1.40
44 45 5.144359 GCGACGTGTGATGAGTTTTTATTT 58.856 37.500 0.00 0.00 0.00 1.40
45 46 5.058008 GCGACGTGTGATGAGTTTTTATTTG 59.942 40.000 0.00 0.00 0.00 2.32
46 47 6.133392 CGACGTGTGATGAGTTTTTATTTGT 58.867 36.000 0.00 0.00 0.00 2.83
47 48 6.631238 CGACGTGTGATGAGTTTTTATTTGTT 59.369 34.615 0.00 0.00 0.00 2.83
48 49 7.356396 CGACGTGTGATGAGTTTTTATTTGTTG 60.356 37.037 0.00 0.00 0.00 3.33
49 50 7.476667 ACGTGTGATGAGTTTTTATTTGTTGA 58.523 30.769 0.00 0.00 0.00 3.18
50 51 7.971168 ACGTGTGATGAGTTTTTATTTGTTGAA 59.029 29.630 0.00 0.00 0.00 2.69
51 52 8.259194 CGTGTGATGAGTTTTTATTTGTTGAAC 58.741 33.333 0.00 0.00 0.00 3.18
52 53 9.301153 GTGTGATGAGTTTTTATTTGTTGAACT 57.699 29.630 0.00 0.00 33.58 3.01
83 84 9.881529 AATTTGTATTGAATGATTTGTTGTTGC 57.118 25.926 0.00 0.00 0.00 4.17
84 85 8.429493 TTTGTATTGAATGATTTGTTGTTGCA 57.571 26.923 0.00 0.00 0.00 4.08
85 86 7.405469 TGTATTGAATGATTTGTTGTTGCAC 57.595 32.000 0.00 0.00 0.00 4.57
86 87 7.208777 TGTATTGAATGATTTGTTGTTGCACT 58.791 30.769 0.00 0.00 0.00 4.40
87 88 8.355913 TGTATTGAATGATTTGTTGTTGCACTA 58.644 29.630 0.00 0.00 0.00 2.74
88 89 9.357652 GTATTGAATGATTTGTTGTTGCACTAT 57.642 29.630 0.00 0.00 0.00 2.12
89 90 8.836268 ATTGAATGATTTGTTGTTGCACTATT 57.164 26.923 0.00 0.00 0.00 1.73
90 91 8.659925 TTGAATGATTTGTTGTTGCACTATTT 57.340 26.923 0.00 0.00 0.00 1.40
91 92 8.659925 TGAATGATTTGTTGTTGCACTATTTT 57.340 26.923 0.00 0.00 0.00 1.82
92 93 8.549548 TGAATGATTTGTTGTTGCACTATTTTG 58.450 29.630 0.00 0.00 0.00 2.44
93 94 8.436046 AATGATTTGTTGTTGCACTATTTTGT 57.564 26.923 0.00 0.00 0.00 2.83
94 95 7.840342 TGATTTGTTGTTGCACTATTTTGTT 57.160 28.000 0.00 0.00 0.00 2.83
95 96 7.682824 TGATTTGTTGTTGCACTATTTTGTTG 58.317 30.769 0.00 0.00 0.00 3.33
96 97 7.547019 TGATTTGTTGTTGCACTATTTTGTTGA 59.453 29.630 0.00 0.00 0.00 3.18
97 98 7.658179 TTTGTTGTTGCACTATTTTGTTGAA 57.342 28.000 0.00 0.00 0.00 2.69
98 99 6.884096 TGTTGTTGCACTATTTTGTTGAAG 57.116 33.333 0.00 0.00 0.00 3.02
99 100 6.393990 TGTTGTTGCACTATTTTGTTGAAGT 58.606 32.000 0.00 0.00 0.00 3.01
100 101 7.539436 TGTTGTTGCACTATTTTGTTGAAGTA 58.461 30.769 0.00 0.00 0.00 2.24
101 102 8.194104 TGTTGTTGCACTATTTTGTTGAAGTAT 58.806 29.630 0.00 0.00 0.00 2.12
102 103 9.030301 GTTGTTGCACTATTTTGTTGAAGTATT 57.970 29.630 0.00 0.00 0.00 1.89
103 104 9.593134 TTGTTGCACTATTTTGTTGAAGTATTT 57.407 25.926 0.00 0.00 0.00 1.40
104 105 9.029243 TGTTGCACTATTTTGTTGAAGTATTTG 57.971 29.630 0.00 0.00 0.00 2.32
105 106 9.243637 GTTGCACTATTTTGTTGAAGTATTTGA 57.756 29.630 0.00 0.00 0.00 2.69
106 107 9.979578 TTGCACTATTTTGTTGAAGTATTTGAT 57.020 25.926 0.00 0.00 0.00 2.57
107 108 9.979578 TGCACTATTTTGTTGAAGTATTTGATT 57.020 25.926 0.00 0.00 0.00 2.57
160 161 8.948853 ATATTTATGTTGATAATTGAACGCCG 57.051 30.769 0.00 0.00 0.00 6.46
161 162 6.424176 TTTATGTTGATAATTGAACGCCGA 57.576 33.333 0.00 0.00 0.00 5.54
162 163 4.955925 ATGTTGATAATTGAACGCCGAA 57.044 36.364 0.00 0.00 0.00 4.30
163 164 4.073169 TGTTGATAATTGAACGCCGAAC 57.927 40.909 0.00 0.00 0.00 3.95
164 165 3.120130 TGTTGATAATTGAACGCCGAACC 60.120 43.478 0.00 0.00 0.00 3.62
165 166 2.701107 TGATAATTGAACGCCGAACCA 58.299 42.857 0.00 0.00 0.00 3.67
166 167 2.417239 TGATAATTGAACGCCGAACCAC 59.583 45.455 0.00 0.00 0.00 4.16
167 168 0.791422 TAATTGAACGCCGAACCACG 59.209 50.000 0.00 0.00 42.18 4.94
168 169 0.881159 AATTGAACGCCGAACCACGA 60.881 50.000 0.00 0.00 45.77 4.35
169 170 1.562575 ATTGAACGCCGAACCACGAC 61.563 55.000 0.00 0.00 45.77 4.34
174 175 3.408851 GCCGAACCACGACGAACC 61.409 66.667 0.00 0.00 45.77 3.62
175 176 3.101428 CCGAACCACGACGAACCG 61.101 66.667 0.00 0.00 45.77 4.44
176 177 3.759828 CGAACCACGACGAACCGC 61.760 66.667 0.00 0.00 45.77 5.68
184 185 2.580326 GACGAACCGCGCCGAATA 60.580 61.111 17.85 0.00 46.04 1.75
185 186 1.947642 GACGAACCGCGCCGAATAT 60.948 57.895 17.85 0.00 46.04 1.28
186 187 2.142418 GACGAACCGCGCCGAATATG 62.142 60.000 17.85 0.00 46.04 1.78
187 188 2.935955 GAACCGCGCCGAATATGG 59.064 61.111 0.00 0.00 0.00 2.74
188 189 2.590575 AACCGCGCCGAATATGGG 60.591 61.111 0.00 0.00 0.00 4.00
207 208 2.292267 GGCATATTCTCGCCCATATGG 58.708 52.381 15.41 15.41 42.82 2.74
220 221 1.818674 CCATATGGGCCCTTTATTCGC 59.181 52.381 25.70 0.00 0.00 4.70
221 222 1.818674 CATATGGGCCCTTTATTCGCC 59.181 52.381 25.70 0.00 42.23 5.54
222 223 0.250553 TATGGGCCCTTTATTCGCCG 60.251 55.000 25.70 0.00 43.99 6.46
223 224 1.990160 ATGGGCCCTTTATTCGCCGA 61.990 55.000 25.70 0.00 43.99 5.54
224 225 1.452470 GGGCCCTTTATTCGCCGAA 60.452 57.895 17.04 0.33 43.99 4.30
225 226 1.033202 GGGCCCTTTATTCGCCGAAA 61.033 55.000 17.04 0.00 43.99 3.46
226 227 0.380733 GGCCCTTTATTCGCCGAAAG 59.619 55.000 2.60 0.00 31.92 2.62
227 228 1.092348 GCCCTTTATTCGCCGAAAGT 58.908 50.000 2.60 0.00 31.89 2.66
228 229 1.202143 GCCCTTTATTCGCCGAAAGTG 60.202 52.381 2.60 0.00 31.89 3.16
229 230 1.400494 CCCTTTATTCGCCGAAAGTGG 59.600 52.381 2.60 4.21 31.89 4.00
230 231 1.400494 CCTTTATTCGCCGAAAGTGGG 59.600 52.381 2.60 0.78 31.89 4.61
236 237 2.981350 GCCGAAAGTGGGCCGAAA 60.981 61.111 0.00 0.00 44.97 3.46
237 238 2.557372 GCCGAAAGTGGGCCGAAAA 61.557 57.895 0.00 0.00 44.97 2.29
238 239 2.034607 CCGAAAGTGGGCCGAAAAA 58.965 52.632 0.00 0.00 0.00 1.94
239 240 0.601057 CCGAAAGTGGGCCGAAAAAT 59.399 50.000 0.00 0.00 0.00 1.82
240 241 1.668628 CCGAAAGTGGGCCGAAAAATG 60.669 52.381 0.00 0.00 0.00 2.32
241 242 1.268352 CGAAAGTGGGCCGAAAAATGA 59.732 47.619 0.00 0.00 0.00 2.57
242 243 2.668279 CGAAAGTGGGCCGAAAAATGAG 60.668 50.000 0.00 0.00 0.00 2.90
243 244 1.256812 AAGTGGGCCGAAAAATGAGG 58.743 50.000 0.00 0.00 0.00 3.86
252 253 3.888934 CCGAAAAATGAGGCAATATCGG 58.111 45.455 0.00 0.00 42.01 4.18
253 254 3.315191 CCGAAAAATGAGGCAATATCGGT 59.685 43.478 0.00 0.00 42.58 4.69
254 255 4.282068 CGAAAAATGAGGCAATATCGGTG 58.718 43.478 0.00 0.00 0.00 4.94
255 256 3.715628 AAAATGAGGCAATATCGGTGC 57.284 42.857 0.00 0.00 41.45 5.01
260 261 3.749981 GCAATATCGGTGCCTGGG 58.250 61.111 0.00 0.00 35.91 4.45
261 262 1.898574 GCAATATCGGTGCCTGGGG 60.899 63.158 0.00 0.00 35.91 4.96
262 263 1.228245 CAATATCGGTGCCTGGGGG 60.228 63.158 0.00 0.00 0.00 5.40
275 276 3.472726 GGGGGCGACGGTTGGATA 61.473 66.667 0.00 0.00 0.00 2.59
276 277 2.202974 GGGGCGACGGTTGGATAC 60.203 66.667 0.00 0.00 0.00 2.24
277 278 2.202974 GGGCGACGGTTGGATACC 60.203 66.667 0.00 0.00 44.03 2.73
278 279 2.202974 GGCGACGGTTGGATACCC 60.203 66.667 0.00 0.00 44.70 3.69
279 280 2.580276 GCGACGGTTGGATACCCA 59.420 61.111 0.00 0.00 44.70 4.51
286 287 3.829224 TTGGATACCCAACCGCCT 58.171 55.556 0.00 0.00 46.94 5.52
287 288 1.605453 TTGGATACCCAACCGCCTC 59.395 57.895 0.00 0.00 46.94 4.70
288 289 1.917336 TTGGATACCCAACCGCCTCC 61.917 60.000 0.00 0.00 46.94 4.30
289 290 2.372074 GGATACCCAACCGCCTCCA 61.372 63.158 0.00 0.00 0.00 3.86
290 291 1.146263 GATACCCAACCGCCTCCAG 59.854 63.158 0.00 0.00 0.00 3.86
291 292 2.942648 GATACCCAACCGCCTCCAGC 62.943 65.000 0.00 0.00 38.52 4.85
301 302 2.499205 CCTCCAGCGCCGATTGTA 59.501 61.111 2.29 0.00 0.00 2.41
302 303 1.069765 CCTCCAGCGCCGATTGTAT 59.930 57.895 2.29 0.00 0.00 2.29
303 304 0.946221 CCTCCAGCGCCGATTGTATC 60.946 60.000 2.29 0.00 0.00 2.24
311 312 3.538841 CGATTGTATCGCCGGCTC 58.461 61.111 26.68 12.39 46.55 4.70
312 313 2.365068 CGATTGTATCGCCGGCTCG 61.365 63.158 26.68 20.74 46.55 5.03
313 314 2.658707 GATTGTATCGCCGGCTCGC 61.659 63.158 26.68 12.33 0.00 5.03
314 315 4.884257 TTGTATCGCCGGCTCGCC 62.884 66.667 26.68 10.48 0.00 5.54
331 332 3.531821 CCCCAGGGGCGATTTTTAT 57.468 52.632 13.35 0.00 35.35 1.40
332 333 1.039856 CCCCAGGGGCGATTTTTATG 58.960 55.000 13.35 0.00 35.35 1.90
333 334 0.389025 CCCAGGGGCGATTTTTATGC 59.611 55.000 0.00 0.00 0.00 3.14
334 335 0.030638 CCAGGGGCGATTTTTATGCG 59.969 55.000 0.00 0.00 0.00 4.73
335 336 0.738389 CAGGGGCGATTTTTATGCGT 59.262 50.000 0.00 0.00 0.00 5.24
336 337 1.021968 AGGGGCGATTTTTATGCGTC 58.978 50.000 0.00 0.00 0.00 5.19
337 338 3.544615 GGGCGATTTTTATGCGTCC 57.455 52.632 0.00 0.00 42.93 4.79
338 339 1.021968 GGGCGATTTTTATGCGTCCT 58.978 50.000 0.00 0.00 45.64 3.85
339 340 1.268539 GGGCGATTTTTATGCGTCCTG 60.269 52.381 0.00 0.00 45.64 3.86
340 341 1.268539 GGCGATTTTTATGCGTCCTGG 60.269 52.381 0.00 0.00 0.00 4.45
341 342 1.268539 GCGATTTTTATGCGTCCTGGG 60.269 52.381 0.00 0.00 0.00 4.45
342 343 1.333619 CGATTTTTATGCGTCCTGGGG 59.666 52.381 0.00 0.00 0.00 4.96
343 344 2.650322 GATTTTTATGCGTCCTGGGGA 58.350 47.619 0.00 0.00 0.00 4.81
344 345 2.122783 TTTTTATGCGTCCTGGGGAG 57.877 50.000 0.00 0.00 29.39 4.30
345 346 0.988832 TTTTATGCGTCCTGGGGAGT 59.011 50.000 0.00 0.00 29.39 3.85
346 347 0.539986 TTTATGCGTCCTGGGGAGTC 59.460 55.000 0.00 0.00 29.39 3.36
347 348 0.616395 TTATGCGTCCTGGGGAGTCA 60.616 55.000 0.00 0.00 29.39 3.41
348 349 0.616395 TATGCGTCCTGGGGAGTCAA 60.616 55.000 0.00 0.00 29.39 3.18
349 350 2.047179 GCGTCCTGGGGAGTCAAC 60.047 66.667 0.00 0.00 29.39 3.18
350 351 2.261671 CGTCCTGGGGAGTCAACG 59.738 66.667 0.00 0.00 29.39 4.10
351 352 2.663196 GTCCTGGGGAGTCAACGG 59.337 66.667 0.00 0.00 29.39 4.44
352 353 3.319198 TCCTGGGGAGTCAACGGC 61.319 66.667 0.00 0.00 0.00 5.68
353 354 3.322466 CCTGGGGAGTCAACGGCT 61.322 66.667 0.00 0.00 0.00 5.52
354 355 2.046892 CTGGGGAGTCAACGGCTG 60.047 66.667 0.00 0.00 0.00 4.85
355 356 2.525629 TGGGGAGTCAACGGCTGA 60.526 61.111 0.00 0.00 0.00 4.26
356 357 2.111999 CTGGGGAGTCAACGGCTGAA 62.112 60.000 0.00 0.00 35.22 3.02
357 358 1.376037 GGGGAGTCAACGGCTGAAG 60.376 63.158 0.00 0.00 35.22 3.02
358 359 1.671742 GGGAGTCAACGGCTGAAGA 59.328 57.895 0.00 0.00 35.22 2.87
359 360 0.250513 GGGAGTCAACGGCTGAAGAT 59.749 55.000 0.00 0.00 35.22 2.40
360 361 1.363744 GGAGTCAACGGCTGAAGATG 58.636 55.000 0.00 0.00 35.22 2.90
361 362 0.723981 GAGTCAACGGCTGAAGATGC 59.276 55.000 0.00 0.00 35.22 3.91
362 363 0.322975 AGTCAACGGCTGAAGATGCT 59.677 50.000 0.00 0.00 35.22 3.79
363 364 0.723981 GTCAACGGCTGAAGATGCTC 59.276 55.000 0.00 0.00 35.22 4.26
364 365 0.610174 TCAACGGCTGAAGATGCTCT 59.390 50.000 0.00 0.00 0.00 4.09
365 366 1.824852 TCAACGGCTGAAGATGCTCTA 59.175 47.619 0.00 0.00 0.00 2.43
366 367 2.233676 TCAACGGCTGAAGATGCTCTAA 59.766 45.455 0.00 0.00 0.00 2.10
367 368 3.002791 CAACGGCTGAAGATGCTCTAAA 58.997 45.455 0.00 0.00 0.00 1.85
368 369 3.334583 ACGGCTGAAGATGCTCTAAAA 57.665 42.857 0.00 0.00 0.00 1.52
369 370 3.674997 ACGGCTGAAGATGCTCTAAAAA 58.325 40.909 0.00 0.00 0.00 1.94
370 371 3.686726 ACGGCTGAAGATGCTCTAAAAAG 59.313 43.478 0.00 0.00 0.00 2.27
371 372 3.486542 CGGCTGAAGATGCTCTAAAAAGC 60.487 47.826 0.00 0.00 42.82 3.51
383 384 5.783100 CTCTAAAAAGCAGAGCTGAAGAG 57.217 43.478 0.85 0.00 39.62 2.85
384 385 5.474578 TCTAAAAAGCAGAGCTGAAGAGA 57.525 39.130 0.85 0.00 39.62 3.10
385 386 5.477510 TCTAAAAAGCAGAGCTGAAGAGAG 58.522 41.667 0.85 0.00 39.62 3.20
386 387 2.097680 AAAGCAGAGCTGAAGAGAGC 57.902 50.000 0.85 0.00 39.62 4.09
387 388 0.975135 AAGCAGAGCTGAAGAGAGCA 59.025 50.000 0.85 0.00 41.83 4.26
388 389 0.533491 AGCAGAGCTGAAGAGAGCAG 59.467 55.000 0.85 0.00 41.83 4.24
389 390 0.247185 GCAGAGCTGAAGAGAGCAGT 59.753 55.000 0.85 0.00 41.83 4.40
390 391 1.999048 CAGAGCTGAAGAGAGCAGTG 58.001 55.000 0.00 0.00 41.83 3.66
391 392 0.247185 AGAGCTGAAGAGAGCAGTGC 59.753 55.000 7.13 7.13 41.83 4.40
392 393 0.740516 GAGCTGAAGAGAGCAGTGCC 60.741 60.000 12.58 3.25 41.83 5.01
393 394 2.099431 GCTGAAGAGAGCAGTGCCG 61.099 63.158 12.58 0.00 38.95 5.69
394 395 1.447489 CTGAAGAGAGCAGTGCCGG 60.447 63.158 12.58 0.00 0.00 6.13
395 396 2.817396 GAAGAGAGCAGTGCCGGC 60.817 66.667 22.73 22.73 0.00 6.13
396 397 4.749310 AAGAGAGCAGTGCCGGCG 62.749 66.667 23.90 8.96 36.08 6.46
412 413 4.803426 CGCCAGCCCTCGTGTCTC 62.803 72.222 0.00 0.00 0.00 3.36
413 414 4.459089 GCCAGCCCTCGTGTCTCC 62.459 72.222 0.00 0.00 0.00 3.71
414 415 4.135153 CCAGCCCTCGTGTCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
415 416 4.803426 CAGCCCTCGTGTCTCCGC 62.803 72.222 0.00 0.00 0.00 5.54
418 419 4.135153 CCCTCGTGTCTCCGCCAG 62.135 72.222 0.00 0.00 0.00 4.85
419 420 3.062466 CCTCGTGTCTCCGCCAGA 61.062 66.667 0.00 0.00 0.00 3.86
420 421 2.487428 CTCGTGTCTCCGCCAGAG 59.513 66.667 0.00 0.00 44.75 3.35
427 428 2.581354 CTCCGCCAGAGAACAGGG 59.419 66.667 0.00 0.00 46.50 4.45
428 429 3.003173 TCCGCCAGAGAACAGGGG 61.003 66.667 0.00 0.00 35.87 4.79
429 430 4.785453 CCGCCAGAGAACAGGGGC 62.785 72.222 0.00 0.00 42.98 5.80
430 431 4.020617 CGCCAGAGAACAGGGGCA 62.021 66.667 0.00 0.00 46.75 5.36
431 432 2.436109 GCCAGAGAACAGGGGCAA 59.564 61.111 0.00 0.00 45.70 4.52
432 433 1.676967 GCCAGAGAACAGGGGCAAG 60.677 63.158 0.00 0.00 45.70 4.01
433 434 1.001641 CCAGAGAACAGGGGCAAGG 60.002 63.158 0.00 0.00 0.00 3.61
434 435 1.492133 CCAGAGAACAGGGGCAAGGA 61.492 60.000 0.00 0.00 0.00 3.36
435 436 0.401738 CAGAGAACAGGGGCAAGGAA 59.598 55.000 0.00 0.00 0.00 3.36
436 437 1.149101 AGAGAACAGGGGCAAGGAAA 58.851 50.000 0.00 0.00 0.00 3.13
437 438 1.074566 AGAGAACAGGGGCAAGGAAAG 59.925 52.381 0.00 0.00 0.00 2.62
438 439 0.113190 AGAACAGGGGCAAGGAAAGG 59.887 55.000 0.00 0.00 0.00 3.11
439 440 0.178961 GAACAGGGGCAAGGAAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
440 441 0.469892 AACAGGGGCAAGGAAAGGTG 60.470 55.000 0.00 0.00 0.00 4.00
441 442 1.360393 ACAGGGGCAAGGAAAGGTGA 61.360 55.000 0.00 0.00 0.00 4.02
442 443 0.178964 CAGGGGCAAGGAAAGGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
443 444 0.560688 AGGGGCAAGGAAAGGTGAAA 59.439 50.000 0.00 0.00 0.00 2.69
444 445 1.062505 AGGGGCAAGGAAAGGTGAAAA 60.063 47.619 0.00 0.00 0.00 2.29
445 446 1.344438 GGGGCAAGGAAAGGTGAAAAG 59.656 52.381 0.00 0.00 0.00 2.27
446 447 1.344438 GGGCAAGGAAAGGTGAAAAGG 59.656 52.381 0.00 0.00 0.00 3.11
447 448 1.270305 GGCAAGGAAAGGTGAAAAGGC 60.270 52.381 0.00 0.00 0.00 4.35
448 449 1.688735 GCAAGGAAAGGTGAAAAGGCT 59.311 47.619 0.00 0.00 0.00 4.58
449 450 2.103094 GCAAGGAAAGGTGAAAAGGCTT 59.897 45.455 0.00 0.00 0.00 4.35
450 451 3.432186 GCAAGGAAAGGTGAAAAGGCTTT 60.432 43.478 6.68 6.68 0.00 3.51
451 452 4.202212 GCAAGGAAAGGTGAAAAGGCTTTA 60.202 41.667 13.77 0.00 0.00 1.85
452 453 5.289595 CAAGGAAAGGTGAAAAGGCTTTAC 58.710 41.667 13.77 8.61 0.00 2.01
453 454 4.804597 AGGAAAGGTGAAAAGGCTTTACT 58.195 39.130 13.77 6.74 0.00 2.24
454 455 5.208890 AGGAAAGGTGAAAAGGCTTTACTT 58.791 37.500 13.77 12.09 0.00 2.24
455 456 5.661312 AGGAAAGGTGAAAAGGCTTTACTTT 59.339 36.000 21.30 21.30 42.17 2.66
465 466 6.677781 AAAGGCTTTACTTTTTCCTTTTGC 57.322 33.333 11.52 0.00 42.58 3.68
466 467 4.368315 AGGCTTTACTTTTTCCTTTTGCG 58.632 39.130 0.00 0.00 0.00 4.85
467 468 4.098807 AGGCTTTACTTTTTCCTTTTGCGA 59.901 37.500 0.00 0.00 0.00 5.10
468 469 4.806775 GGCTTTACTTTTTCCTTTTGCGAA 59.193 37.500 0.00 0.00 0.00 4.70
469 470 5.465390 GGCTTTACTTTTTCCTTTTGCGAAT 59.535 36.000 0.00 0.00 0.00 3.34
470 471 6.354858 GCTTTACTTTTTCCTTTTGCGAATG 58.645 36.000 0.00 0.00 0.00 2.67
471 472 6.200097 GCTTTACTTTTTCCTTTTGCGAATGA 59.800 34.615 1.13 0.00 0.00 2.57
472 473 7.254286 GCTTTACTTTTTCCTTTTGCGAATGAA 60.254 33.333 1.13 0.00 0.00 2.57
473 474 8.480643 TTTACTTTTTCCTTTTGCGAATGAAA 57.519 26.923 7.48 7.48 0.00 2.69
474 475 6.976636 ACTTTTTCCTTTTGCGAATGAAAA 57.023 29.167 15.50 15.50 0.00 2.29
475 476 7.371126 ACTTTTTCCTTTTGCGAATGAAAAA 57.629 28.000 22.96 22.96 31.67 1.94
476 477 7.463544 ACTTTTTCCTTTTGCGAATGAAAAAG 58.536 30.769 32.93 32.93 46.36 2.27
481 482 5.408204 CTTTTGCGAATGAAAAAGGCTTT 57.592 34.783 6.68 6.68 44.07 3.51
482 483 6.523676 CTTTTGCGAATGAAAAAGGCTTTA 57.476 33.333 13.77 0.00 44.07 1.85
483 484 5.898630 TTTGCGAATGAAAAAGGCTTTAC 57.101 34.783 13.77 11.03 0.00 2.01
484 485 4.846779 TGCGAATGAAAAAGGCTTTACT 57.153 36.364 13.77 3.41 0.00 2.24
485 486 5.195001 TGCGAATGAAAAAGGCTTTACTT 57.805 34.783 13.77 4.65 0.00 2.24
486 487 5.219633 TGCGAATGAAAAAGGCTTTACTTC 58.780 37.500 13.77 14.28 0.00 3.01
487 488 5.219633 GCGAATGAAAAAGGCTTTACTTCA 58.780 37.500 22.50 22.50 0.00 3.02
488 489 5.689961 GCGAATGAAAAAGGCTTTACTTCAA 59.310 36.000 23.52 12.25 0.00 2.69
489 490 6.345803 GCGAATGAAAAAGGCTTTACTTCAAC 60.346 38.462 23.52 19.40 0.00 3.18
490 491 6.918022 CGAATGAAAAAGGCTTTACTTCAACT 59.082 34.615 23.52 16.46 0.00 3.16
491 492 7.096477 CGAATGAAAAAGGCTTTACTTCAACTG 60.096 37.037 23.52 15.06 0.00 3.16
492 493 5.348164 TGAAAAAGGCTTTACTTCAACTGC 58.652 37.500 19.58 0.83 0.00 4.40
493 494 4.322080 AAAAGGCTTTACTTCAACTGCC 57.678 40.909 13.77 0.00 36.66 4.85
494 495 2.656947 AGGCTTTACTTCAACTGCCA 57.343 45.000 0.00 0.00 38.06 4.92
495 496 3.160679 AGGCTTTACTTCAACTGCCAT 57.839 42.857 0.00 0.00 38.06 4.40
496 497 2.821969 AGGCTTTACTTCAACTGCCATG 59.178 45.455 0.00 0.00 38.06 3.66
497 498 2.819608 GGCTTTACTTCAACTGCCATGA 59.180 45.455 0.00 0.00 36.51 3.07
498 499 3.445096 GGCTTTACTTCAACTGCCATGAT 59.555 43.478 0.00 0.00 36.51 2.45
499 500 4.082026 GGCTTTACTTCAACTGCCATGATT 60.082 41.667 0.00 0.00 36.51 2.57
500 501 5.098211 GCTTTACTTCAACTGCCATGATTC 58.902 41.667 0.00 0.00 0.00 2.52
501 502 5.335897 GCTTTACTTCAACTGCCATGATTCA 60.336 40.000 0.00 0.00 0.00 2.57
502 503 5.885230 TTACTTCAACTGCCATGATTCAG 57.115 39.130 0.00 1.01 36.45 3.02
503 504 4.025040 ACTTCAACTGCCATGATTCAGA 57.975 40.909 13.86 0.00 34.57 3.27
504 505 4.401022 ACTTCAACTGCCATGATTCAGAA 58.599 39.130 13.86 0.00 34.57 3.02
505 506 4.458295 ACTTCAACTGCCATGATTCAGAAG 59.542 41.667 13.86 11.96 34.57 2.85
506 507 4.025040 TCAACTGCCATGATTCAGAAGT 57.975 40.909 13.86 0.00 34.57 3.01
507 508 4.005650 TCAACTGCCATGATTCAGAAGTC 58.994 43.478 13.86 0.00 34.57 3.01
508 509 2.996631 ACTGCCATGATTCAGAAGTCC 58.003 47.619 13.86 0.00 34.57 3.85
509 510 2.575279 ACTGCCATGATTCAGAAGTCCT 59.425 45.455 13.86 0.00 34.57 3.85
510 511 3.204526 CTGCCATGATTCAGAAGTCCTC 58.795 50.000 0.00 0.00 32.26 3.71
511 512 2.573009 TGCCATGATTCAGAAGTCCTCA 59.427 45.455 0.00 0.00 0.00 3.86
512 513 3.204526 GCCATGATTCAGAAGTCCTCAG 58.795 50.000 0.00 0.00 0.00 3.35
513 514 3.204526 CCATGATTCAGAAGTCCTCAGC 58.795 50.000 0.00 0.00 0.00 4.26
514 515 3.118334 CCATGATTCAGAAGTCCTCAGCT 60.118 47.826 0.00 0.00 0.00 4.24
515 516 4.515361 CATGATTCAGAAGTCCTCAGCTT 58.485 43.478 0.00 0.00 0.00 3.74
516 517 4.199432 TGATTCAGAAGTCCTCAGCTTC 57.801 45.455 0.00 0.00 41.78 3.86
521 522 1.899142 AGAAGTCCTCAGCTTCCTGAC 59.101 52.381 0.00 0.00 42.98 3.51
527 528 2.125912 CAGCTTCCTGACGACCCG 60.126 66.667 0.00 0.00 41.77 5.28
536 537 1.067425 CCTGACGACCCGTTATTGACA 60.067 52.381 0.00 0.00 41.37 3.58
542 543 4.320870 ACGACCCGTTATTGACAATCTTT 58.679 39.130 3.36 0.00 36.35 2.52
557 558 5.638133 ACAATCTTTATATGGCCAGCTCAT 58.362 37.500 13.05 4.32 0.00 2.90
652 658 1.354040 GCAGAATATCCATCGAGCGG 58.646 55.000 0.00 0.00 0.00 5.52
677 683 6.441274 GCATTACATCAACAATACAGGATGG 58.559 40.000 0.00 0.00 43.62 3.51
709 741 9.932699 CATTGCAACAAATAATCACAAAAGAAA 57.067 25.926 0.00 0.00 0.00 2.52
745 777 1.296068 TGCGATCAGGCACATGACA 59.704 52.632 0.00 0.00 38.17 3.58
764 796 3.222603 ACAAAGGAAGGGTCACATGAAC 58.777 45.455 0.00 0.00 0.00 3.18
1023 1055 3.785859 TCGCCCATGCTCTCCACC 61.786 66.667 0.00 0.00 34.43 4.61
1050 1082 1.613317 CGCCACTCCAGGTATGTCCA 61.613 60.000 0.00 0.00 39.02 4.02
1051 1083 0.107654 GCCACTCCAGGTATGTCCAC 60.108 60.000 0.00 0.00 39.02 4.02
1086 1121 1.334160 TGCGTCCTACAGTTCTTCCA 58.666 50.000 0.00 0.00 0.00 3.53
1915 1973 2.099405 CCCTCTGTCTCTCAAGTCTCC 58.901 57.143 0.00 0.00 0.00 3.71
2023 2081 4.753662 ACCGGCGACCAGAGGCTA 62.754 66.667 9.30 0.00 0.00 3.93
2318 2377 1.154263 CTCGTGTCCGTCGACTTCC 60.154 63.158 14.70 1.12 39.94 3.46
2371 2491 2.487532 GCTCAGCATGGTCATGGGC 61.488 63.158 12.23 0.00 39.16 5.36
2711 2831 6.223120 TCAACGCTGTGCATCTGTAATATAT 58.777 36.000 0.00 0.00 0.00 0.86
2712 2832 7.375053 TCAACGCTGTGCATCTGTAATATATA 58.625 34.615 0.00 0.00 0.00 0.86
2713 2833 7.328493 TCAACGCTGTGCATCTGTAATATATAC 59.672 37.037 0.00 0.00 0.00 1.47
2714 2834 5.800438 ACGCTGTGCATCTGTAATATATACG 59.200 40.000 0.00 0.00 0.00 3.06
2978 3108 9.685276 TTATCAGAGTTATCCACACAAATTGAT 57.315 29.630 0.00 0.00 0.00 2.57
3016 3151 0.249073 CGATCTGCGAACCTAGGTGG 60.249 60.000 17.14 12.06 44.57 4.61
3017 3152 1.112113 GATCTGCGAACCTAGGTGGA 58.888 55.000 17.14 4.00 39.71 4.02
3018 3153 1.689273 GATCTGCGAACCTAGGTGGAT 59.311 52.381 17.14 13.58 39.71 3.41
3131 3270 1.246056 TGCTTGGTGCCAATCAGAGC 61.246 55.000 3.91 4.66 42.00 4.09
3179 3318 7.951806 TGGAAATCATGAGGGATAAATATTGCT 59.048 33.333 0.09 0.00 0.00 3.91
3446 3591 3.551846 TGAACTTCAACCAGGGTTCTTC 58.448 45.455 0.00 1.53 38.86 2.87
3458 3603 3.056107 CAGGGTTCTTCGGATGACACTAA 60.056 47.826 0.00 0.00 0.00 2.24
3463 3608 6.103997 GGTTCTTCGGATGACACTAAATACA 58.896 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.545481 CTCATCACACGTCGCGCC 61.545 66.667 0.00 0.00 0.00 6.53
19 20 1.886861 AAACTCATCACACGTCGCGC 61.887 55.000 0.00 0.00 0.00 6.86
20 21 0.506932 AAAACTCATCACACGTCGCG 59.493 50.000 0.00 0.00 0.00 5.87
21 22 2.663279 AAAAACTCATCACACGTCGC 57.337 45.000 0.00 0.00 0.00 5.19
22 23 6.133392 ACAAATAAAAACTCATCACACGTCG 58.867 36.000 0.00 0.00 0.00 5.12
23 24 7.642194 TCAACAAATAAAAACTCATCACACGTC 59.358 33.333 0.00 0.00 0.00 4.34
24 25 7.476667 TCAACAAATAAAAACTCATCACACGT 58.523 30.769 0.00 0.00 0.00 4.49
25 26 7.906611 TCAACAAATAAAAACTCATCACACG 57.093 32.000 0.00 0.00 0.00 4.49
26 27 9.301153 AGTTCAACAAATAAAAACTCATCACAC 57.699 29.630 0.00 0.00 0.00 3.82
57 58 9.881529 GCAACAACAAATCATTCAATACAAATT 57.118 25.926 0.00 0.00 0.00 1.82
58 59 9.053840 TGCAACAACAAATCATTCAATACAAAT 57.946 25.926 0.00 0.00 0.00 2.32
59 60 8.333908 GTGCAACAACAAATCATTCAATACAAA 58.666 29.630 0.00 0.00 36.32 2.83
60 61 7.710044 AGTGCAACAACAAATCATTCAATACAA 59.290 29.630 0.00 0.00 41.43 2.41
61 62 7.208777 AGTGCAACAACAAATCATTCAATACA 58.791 30.769 0.00 0.00 41.43 2.29
62 63 7.642071 AGTGCAACAACAAATCATTCAATAC 57.358 32.000 0.00 0.00 41.43 1.89
63 64 9.926158 AATAGTGCAACAACAAATCATTCAATA 57.074 25.926 0.00 0.00 41.43 1.90
64 65 8.836268 AATAGTGCAACAACAAATCATTCAAT 57.164 26.923 0.00 0.00 41.43 2.57
65 66 8.659925 AAATAGTGCAACAACAAATCATTCAA 57.340 26.923 0.00 0.00 41.43 2.69
66 67 8.549548 CAAAATAGTGCAACAACAAATCATTCA 58.450 29.630 0.00 0.00 41.43 2.57
67 68 8.550376 ACAAAATAGTGCAACAACAAATCATTC 58.450 29.630 0.00 0.00 41.43 2.67
68 69 8.436046 ACAAAATAGTGCAACAACAAATCATT 57.564 26.923 0.00 0.00 41.43 2.57
69 70 8.336806 CAACAAAATAGTGCAACAACAAATCAT 58.663 29.630 0.00 0.00 41.43 2.45
70 71 7.547019 TCAACAAAATAGTGCAACAACAAATCA 59.453 29.630 0.00 0.00 41.43 2.57
71 72 7.904094 TCAACAAAATAGTGCAACAACAAATC 58.096 30.769 0.00 0.00 41.43 2.17
72 73 7.840342 TCAACAAAATAGTGCAACAACAAAT 57.160 28.000 0.00 0.00 41.43 2.32
73 74 7.386299 ACTTCAACAAAATAGTGCAACAACAAA 59.614 29.630 0.00 0.00 41.43 2.83
74 75 6.870965 ACTTCAACAAAATAGTGCAACAACAA 59.129 30.769 0.00 0.00 41.43 2.83
75 76 6.393990 ACTTCAACAAAATAGTGCAACAACA 58.606 32.000 0.00 0.00 41.43 3.33
76 77 6.885735 ACTTCAACAAAATAGTGCAACAAC 57.114 33.333 0.00 0.00 41.43 3.32
77 78 9.593134 AAATACTTCAACAAAATAGTGCAACAA 57.407 25.926 0.00 0.00 41.43 2.83
78 79 9.029243 CAAATACTTCAACAAAATAGTGCAACA 57.971 29.630 0.00 0.00 41.43 3.33
79 80 9.243637 TCAAATACTTCAACAAAATAGTGCAAC 57.756 29.630 0.00 0.00 0.00 4.17
80 81 9.979578 ATCAAATACTTCAACAAAATAGTGCAA 57.020 25.926 0.00 0.00 0.00 4.08
81 82 9.979578 AATCAAATACTTCAACAAAATAGTGCA 57.020 25.926 0.00 0.00 0.00 4.57
134 135 9.393249 CGGCGTTCAATTATCAACATAAATATT 57.607 29.630 0.00 0.00 0.00 1.28
135 136 8.779303 TCGGCGTTCAATTATCAACATAAATAT 58.221 29.630 6.85 0.00 0.00 1.28
136 137 8.144155 TCGGCGTTCAATTATCAACATAAATA 57.856 30.769 6.85 0.00 0.00 1.40
137 138 7.022055 TCGGCGTTCAATTATCAACATAAAT 57.978 32.000 6.85 0.00 0.00 1.40
138 139 6.424176 TCGGCGTTCAATTATCAACATAAA 57.576 33.333 6.85 0.00 0.00 1.40
139 140 6.252281 GTTCGGCGTTCAATTATCAACATAA 58.748 36.000 6.85 0.00 0.00 1.90
140 141 5.220700 GGTTCGGCGTTCAATTATCAACATA 60.221 40.000 6.85 0.00 0.00 2.29
141 142 4.438200 GGTTCGGCGTTCAATTATCAACAT 60.438 41.667 6.85 0.00 0.00 2.71
142 143 3.120130 GGTTCGGCGTTCAATTATCAACA 60.120 43.478 6.85 0.00 0.00 3.33
143 144 3.120130 TGGTTCGGCGTTCAATTATCAAC 60.120 43.478 6.85 0.00 0.00 3.18
144 145 3.075148 TGGTTCGGCGTTCAATTATCAA 58.925 40.909 6.85 0.00 0.00 2.57
145 146 2.417239 GTGGTTCGGCGTTCAATTATCA 59.583 45.455 6.85 0.00 0.00 2.15
146 147 2.536130 CGTGGTTCGGCGTTCAATTATC 60.536 50.000 6.85 0.00 35.71 1.75
147 148 1.395608 CGTGGTTCGGCGTTCAATTAT 59.604 47.619 6.85 0.00 35.71 1.28
148 149 0.791422 CGTGGTTCGGCGTTCAATTA 59.209 50.000 6.85 0.00 35.71 1.40
149 150 0.881159 TCGTGGTTCGGCGTTCAATT 60.881 50.000 6.85 0.00 40.32 2.32
150 151 1.301087 TCGTGGTTCGGCGTTCAAT 60.301 52.632 6.85 0.00 40.32 2.57
151 152 2.106534 TCGTGGTTCGGCGTTCAA 59.893 55.556 6.85 0.00 40.32 2.69
152 153 2.659244 GTCGTGGTTCGGCGTTCA 60.659 61.111 6.85 0.79 40.32 3.18
157 158 3.408851 GGTTCGTCGTGGTTCGGC 61.409 66.667 0.00 0.00 41.11 5.54
158 159 3.101428 CGGTTCGTCGTGGTTCGG 61.101 66.667 0.00 0.00 40.32 4.30
159 160 3.759828 GCGGTTCGTCGTGGTTCG 61.760 66.667 0.00 0.00 41.41 3.95
160 161 3.759828 CGCGGTTCGTCGTGGTTC 61.760 66.667 0.00 0.00 37.05 3.62
167 168 1.947642 ATATTCGGCGCGGTTCGTC 60.948 57.895 15.06 0.00 41.07 4.20
168 169 2.105528 ATATTCGGCGCGGTTCGT 59.894 55.556 15.06 2.64 41.07 3.85
169 170 2.544359 CATATTCGGCGCGGTTCG 59.456 61.111 15.06 6.13 42.12 3.95
170 171 2.604174 CCCATATTCGGCGCGGTTC 61.604 63.158 15.06 0.00 0.00 3.62
171 172 2.590575 CCCATATTCGGCGCGGTT 60.591 61.111 15.06 6.63 0.00 4.44
200 201 1.818674 GCGAATAAAGGGCCCATATGG 59.181 52.381 27.56 15.41 37.09 2.74
201 202 1.818674 GGCGAATAAAGGGCCCATATG 59.181 52.381 27.56 11.89 41.01 1.78
202 203 1.613255 CGGCGAATAAAGGGCCCATAT 60.613 52.381 27.56 19.09 43.99 1.78
203 204 0.250553 CGGCGAATAAAGGGCCCATA 60.251 55.000 27.56 17.50 43.99 2.74
204 205 1.528309 CGGCGAATAAAGGGCCCAT 60.528 57.895 27.56 10.06 43.99 4.00
205 206 2.124487 CGGCGAATAAAGGGCCCA 60.124 61.111 27.56 2.74 43.99 5.36
206 207 1.033202 TTTCGGCGAATAAAGGGCCC 61.033 55.000 24.33 16.46 43.99 5.80
207 208 0.380733 CTTTCGGCGAATAAAGGGCC 59.619 55.000 24.33 0.00 43.42 5.80
208 209 1.092348 ACTTTCGGCGAATAAAGGGC 58.908 50.000 24.33 0.00 37.09 5.19
209 210 1.400494 CCACTTTCGGCGAATAAAGGG 59.600 52.381 24.33 18.34 37.09 3.95
210 211 1.400494 CCCACTTTCGGCGAATAAAGG 59.600 52.381 24.33 20.51 37.09 3.11
211 212 1.202143 GCCCACTTTCGGCGAATAAAG 60.202 52.381 24.33 19.59 36.47 1.85
212 213 0.806241 GCCCACTTTCGGCGAATAAA 59.194 50.000 24.33 7.81 36.47 1.40
213 214 2.473457 GCCCACTTTCGGCGAATAA 58.527 52.632 24.33 8.61 36.47 1.40
214 215 4.211986 GCCCACTTTCGGCGAATA 57.788 55.556 24.33 13.02 36.47 1.75
219 220 2.077821 TTTTTCGGCCCACTTTCGGC 62.078 55.000 0.00 0.00 46.29 5.54
220 221 0.601057 ATTTTTCGGCCCACTTTCGG 59.399 50.000 0.00 0.00 0.00 4.30
221 222 1.268352 TCATTTTTCGGCCCACTTTCG 59.732 47.619 0.00 0.00 0.00 3.46
222 223 2.352715 CCTCATTTTTCGGCCCACTTTC 60.353 50.000 0.00 0.00 0.00 2.62
223 224 1.618343 CCTCATTTTTCGGCCCACTTT 59.382 47.619 0.00 0.00 0.00 2.66
224 225 1.256812 CCTCATTTTTCGGCCCACTT 58.743 50.000 0.00 0.00 0.00 3.16
225 226 1.250840 GCCTCATTTTTCGGCCCACT 61.251 55.000 0.00 0.00 37.86 4.00
226 227 1.215382 GCCTCATTTTTCGGCCCAC 59.785 57.895 0.00 0.00 37.86 4.61
227 228 0.829602 TTGCCTCATTTTTCGGCCCA 60.830 50.000 0.00 0.00 43.12 5.36
228 229 0.536724 ATTGCCTCATTTTTCGGCCC 59.463 50.000 0.00 0.00 43.12 5.80
229 230 3.642705 GATATTGCCTCATTTTTCGGCC 58.357 45.455 0.00 0.00 43.12 6.13
230 231 3.300009 CGATATTGCCTCATTTTTCGGC 58.700 45.455 0.00 0.00 44.02 5.54
231 232 3.315191 ACCGATATTGCCTCATTTTTCGG 59.685 43.478 6.49 6.49 42.01 4.30
232 233 4.282068 CACCGATATTGCCTCATTTTTCG 58.718 43.478 0.00 0.00 0.00 3.46
233 234 4.044426 GCACCGATATTGCCTCATTTTTC 58.956 43.478 0.00 0.00 33.58 2.29
234 235 4.045636 GCACCGATATTGCCTCATTTTT 57.954 40.909 0.00 0.00 33.58 1.94
235 236 3.715628 GCACCGATATTGCCTCATTTT 57.284 42.857 0.00 0.00 33.58 1.82
243 244 1.898574 CCCCAGGCACCGATATTGC 60.899 63.158 0.00 0.00 39.41 3.56
244 245 1.228245 CCCCCAGGCACCGATATTG 60.228 63.158 0.00 0.00 0.00 1.90
245 246 3.250847 CCCCCAGGCACCGATATT 58.749 61.111 0.00 0.00 0.00 1.28
258 259 3.472726 TATCCAACCGTCGCCCCC 61.473 66.667 0.00 0.00 0.00 5.40
259 260 2.202974 GTATCCAACCGTCGCCCC 60.203 66.667 0.00 0.00 0.00 5.80
260 261 2.202974 GGTATCCAACCGTCGCCC 60.203 66.667 0.00 0.00 38.88 6.13
270 271 2.372074 GGAGGCGGTTGGGTATCCA 61.372 63.158 0.00 0.00 42.25 3.41
271 272 2.325393 CTGGAGGCGGTTGGGTATCC 62.325 65.000 0.00 0.00 0.00 2.59
272 273 1.146263 CTGGAGGCGGTTGGGTATC 59.854 63.158 0.00 0.00 0.00 2.24
273 274 3.043999 GCTGGAGGCGGTTGGGTAT 62.044 63.158 0.00 0.00 0.00 2.73
274 275 3.712907 GCTGGAGGCGGTTGGGTA 61.713 66.667 0.00 0.00 0.00 3.69
283 284 2.996168 ATACAATCGGCGCTGGAGGC 62.996 60.000 17.88 0.00 37.64 4.70
284 285 0.946221 GATACAATCGGCGCTGGAGG 60.946 60.000 17.88 8.36 0.00 4.30
285 286 2.522060 GATACAATCGGCGCTGGAG 58.478 57.895 17.88 9.11 0.00 3.86
286 287 4.750460 GATACAATCGGCGCTGGA 57.250 55.556 17.88 10.44 0.00 3.86
295 296 2.658707 GCGAGCCGGCGATACAATC 61.659 63.158 23.20 10.39 0.00 2.67
296 297 2.661866 GCGAGCCGGCGATACAAT 60.662 61.111 23.20 0.00 0.00 2.71
297 298 4.884257 GGCGAGCCGGCGATACAA 62.884 66.667 23.20 0.00 43.33 2.41
314 315 0.389025 GCATAAAAATCGCCCCTGGG 59.611 55.000 5.50 5.50 38.57 4.45
315 316 0.030638 CGCATAAAAATCGCCCCTGG 59.969 55.000 0.00 0.00 0.00 4.45
316 317 0.738389 ACGCATAAAAATCGCCCCTG 59.262 50.000 0.00 0.00 0.00 4.45
317 318 1.021968 GACGCATAAAAATCGCCCCT 58.978 50.000 0.00 0.00 0.00 4.79
318 319 0.030235 GGACGCATAAAAATCGCCCC 59.970 55.000 0.00 0.00 0.00 5.80
319 320 1.021968 AGGACGCATAAAAATCGCCC 58.978 50.000 0.00 0.00 0.00 6.13
320 321 1.268539 CCAGGACGCATAAAAATCGCC 60.269 52.381 0.00 0.00 0.00 5.54
321 322 1.268539 CCCAGGACGCATAAAAATCGC 60.269 52.381 0.00 0.00 0.00 4.58
322 323 1.333619 CCCCAGGACGCATAAAAATCG 59.666 52.381 0.00 0.00 0.00 3.34
323 324 2.618709 CTCCCCAGGACGCATAAAAATC 59.381 50.000 0.00 0.00 0.00 2.17
324 325 2.025321 ACTCCCCAGGACGCATAAAAAT 60.025 45.455 0.00 0.00 0.00 1.82
325 326 1.353022 ACTCCCCAGGACGCATAAAAA 59.647 47.619 0.00 0.00 0.00 1.94
326 327 0.988832 ACTCCCCAGGACGCATAAAA 59.011 50.000 0.00 0.00 0.00 1.52
327 328 0.539986 GACTCCCCAGGACGCATAAA 59.460 55.000 0.00 0.00 0.00 1.40
328 329 0.616395 TGACTCCCCAGGACGCATAA 60.616 55.000 0.00 0.00 0.00 1.90
329 330 0.616395 TTGACTCCCCAGGACGCATA 60.616 55.000 0.00 0.00 0.00 3.14
330 331 1.918293 TTGACTCCCCAGGACGCAT 60.918 57.895 0.00 0.00 0.00 4.73
331 332 2.525629 TTGACTCCCCAGGACGCA 60.526 61.111 0.00 0.00 0.00 5.24
332 333 2.047179 GTTGACTCCCCAGGACGC 60.047 66.667 0.00 0.00 0.00 5.19
333 334 2.261671 CGTTGACTCCCCAGGACG 59.738 66.667 0.00 0.00 0.00 4.79
334 335 2.663196 CCGTTGACTCCCCAGGAC 59.337 66.667 0.00 0.00 0.00 3.85
335 336 3.319198 GCCGTTGACTCCCCAGGA 61.319 66.667 0.00 0.00 0.00 3.86
336 337 3.322466 AGCCGTTGACTCCCCAGG 61.322 66.667 0.00 0.00 0.00 4.45
337 338 2.046892 CAGCCGTTGACTCCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
338 339 2.111999 CTTCAGCCGTTGACTCCCCA 62.112 60.000 0.00 0.00 34.94 4.96
339 340 1.376037 CTTCAGCCGTTGACTCCCC 60.376 63.158 0.00 0.00 34.94 4.81
340 341 0.250513 ATCTTCAGCCGTTGACTCCC 59.749 55.000 0.00 0.00 34.94 4.30
341 342 1.363744 CATCTTCAGCCGTTGACTCC 58.636 55.000 0.00 0.00 34.94 3.85
342 343 0.723981 GCATCTTCAGCCGTTGACTC 59.276 55.000 0.00 0.00 34.94 3.36
343 344 0.322975 AGCATCTTCAGCCGTTGACT 59.677 50.000 0.00 0.00 34.94 3.41
344 345 0.723981 GAGCATCTTCAGCCGTTGAC 59.276 55.000 0.00 0.00 34.94 3.18
345 346 3.143675 GAGCATCTTCAGCCGTTGA 57.856 52.632 0.00 0.00 0.00 3.18
361 362 5.477510 TCTCTTCAGCTCTGCTTTTTAGAG 58.522 41.667 0.00 0.00 43.54 2.43
362 363 5.474578 TCTCTTCAGCTCTGCTTTTTAGA 57.525 39.130 0.00 0.00 36.40 2.10
363 364 4.093261 GCTCTCTTCAGCTCTGCTTTTTAG 59.907 45.833 0.00 0.00 36.40 1.85
364 365 3.999663 GCTCTCTTCAGCTCTGCTTTTTA 59.000 43.478 0.00 0.00 36.40 1.52
365 366 2.813172 GCTCTCTTCAGCTCTGCTTTTT 59.187 45.455 0.00 0.00 36.40 1.94
366 367 2.224475 TGCTCTCTTCAGCTCTGCTTTT 60.224 45.455 0.00 0.00 40.39 2.27
367 368 1.347050 TGCTCTCTTCAGCTCTGCTTT 59.653 47.619 0.00 0.00 40.39 3.51
368 369 0.975135 TGCTCTCTTCAGCTCTGCTT 59.025 50.000 0.00 0.00 40.39 3.91
369 370 0.533491 CTGCTCTCTTCAGCTCTGCT 59.467 55.000 0.00 0.00 40.39 4.24
370 371 0.247185 ACTGCTCTCTTCAGCTCTGC 59.753 55.000 0.00 0.00 40.39 4.26
371 372 1.999048 CACTGCTCTCTTCAGCTCTG 58.001 55.000 0.00 0.00 40.39 3.35
372 373 0.247185 GCACTGCTCTCTTCAGCTCT 59.753 55.000 0.00 0.00 40.39 4.09
373 374 0.740516 GGCACTGCTCTCTTCAGCTC 60.741 60.000 0.00 0.00 40.39 4.09
374 375 1.296068 GGCACTGCTCTCTTCAGCT 59.704 57.895 0.00 0.00 40.39 4.24
375 376 2.099431 CGGCACTGCTCTCTTCAGC 61.099 63.158 0.00 0.00 40.13 4.26
376 377 1.447489 CCGGCACTGCTCTCTTCAG 60.447 63.158 0.00 0.00 37.56 3.02
377 378 2.659016 CCGGCACTGCTCTCTTCA 59.341 61.111 0.00 0.00 0.00 3.02
378 379 2.817396 GCCGGCACTGCTCTCTTC 60.817 66.667 24.80 0.00 35.10 2.87
379 380 4.749310 CGCCGGCACTGCTCTCTT 62.749 66.667 28.98 0.00 36.07 2.85
395 396 4.803426 GAGACACGAGGGCTGGCG 62.803 72.222 0.00 0.00 0.00 5.69
396 397 4.459089 GGAGACACGAGGGCTGGC 62.459 72.222 0.00 0.00 0.00 4.85
397 398 4.135153 CGGAGACACGAGGGCTGG 62.135 72.222 0.00 0.00 35.47 4.85
398 399 4.803426 GCGGAGACACGAGGGCTG 62.803 72.222 0.00 0.00 35.47 4.85
401 402 4.135153 CTGGCGGAGACACGAGGG 62.135 72.222 0.00 0.00 34.89 4.30
402 403 3.057547 CTCTGGCGGAGACACGAGG 62.058 68.421 18.74 0.00 34.89 4.63
403 404 1.587043 TTCTCTGGCGGAGACACGAG 61.587 60.000 25.28 0.00 34.89 4.18
404 405 1.602605 TTCTCTGGCGGAGACACGA 60.603 57.895 25.28 8.45 34.89 4.35
405 406 1.444553 GTTCTCTGGCGGAGACACG 60.445 63.158 25.28 0.00 34.89 4.49
406 407 0.389166 CTGTTCTCTGGCGGAGACAC 60.389 60.000 25.28 23.00 34.89 3.67
410 411 2.581354 CCCTGTTCTCTGGCGGAG 59.419 66.667 17.47 17.47 43.12 4.63
411 412 3.003173 CCCCTGTTCTCTGGCGGA 61.003 66.667 0.00 0.00 0.00 5.54
412 413 4.785453 GCCCCTGTTCTCTGGCGG 62.785 72.222 0.00 0.00 33.59 6.13
414 415 1.676967 CTTGCCCCTGTTCTCTGGC 60.677 63.158 0.00 0.00 44.27 4.85
415 416 1.001641 CCTTGCCCCTGTTCTCTGG 60.002 63.158 0.00 0.00 0.00 3.86
416 417 0.401738 TTCCTTGCCCCTGTTCTCTG 59.598 55.000 0.00 0.00 0.00 3.35
417 418 1.074566 CTTTCCTTGCCCCTGTTCTCT 59.925 52.381 0.00 0.00 0.00 3.10
418 419 1.539157 CTTTCCTTGCCCCTGTTCTC 58.461 55.000 0.00 0.00 0.00 2.87
419 420 0.113190 CCTTTCCTTGCCCCTGTTCT 59.887 55.000 0.00 0.00 0.00 3.01
420 421 0.178961 ACCTTTCCTTGCCCCTGTTC 60.179 55.000 0.00 0.00 0.00 3.18
421 422 0.469892 CACCTTTCCTTGCCCCTGTT 60.470 55.000 0.00 0.00 0.00 3.16
422 423 1.153756 CACCTTTCCTTGCCCCTGT 59.846 57.895 0.00 0.00 0.00 4.00
423 424 0.178964 TTCACCTTTCCTTGCCCCTG 60.179 55.000 0.00 0.00 0.00 4.45
424 425 0.560688 TTTCACCTTTCCTTGCCCCT 59.439 50.000 0.00 0.00 0.00 4.79
425 426 1.344438 CTTTTCACCTTTCCTTGCCCC 59.656 52.381 0.00 0.00 0.00 5.80
426 427 1.344438 CCTTTTCACCTTTCCTTGCCC 59.656 52.381 0.00 0.00 0.00 5.36
427 428 1.270305 GCCTTTTCACCTTTCCTTGCC 60.270 52.381 0.00 0.00 0.00 4.52
428 429 1.688735 AGCCTTTTCACCTTTCCTTGC 59.311 47.619 0.00 0.00 0.00 4.01
429 430 4.406648 AAAGCCTTTTCACCTTTCCTTG 57.593 40.909 0.00 0.00 0.00 3.61
430 431 5.208890 AGTAAAGCCTTTTCACCTTTCCTT 58.791 37.500 0.00 0.00 31.78 3.36
431 432 4.804597 AGTAAAGCCTTTTCACCTTTCCT 58.195 39.130 0.00 0.00 31.78 3.36
432 433 5.531122 AAGTAAAGCCTTTTCACCTTTCC 57.469 39.130 0.00 0.00 31.78 3.13
433 434 7.011109 GGAAAAAGTAAAGCCTTTTCACCTTTC 59.989 37.037 0.00 1.82 42.32 2.62
434 435 6.821665 GGAAAAAGTAAAGCCTTTTCACCTTT 59.178 34.615 0.00 0.00 42.32 3.11
435 436 6.156256 AGGAAAAAGTAAAGCCTTTTCACCTT 59.844 34.615 0.00 0.00 42.32 3.50
436 437 5.661312 AGGAAAAAGTAAAGCCTTTTCACCT 59.339 36.000 0.00 13.92 42.32 4.00
437 438 5.914033 AGGAAAAAGTAAAGCCTTTTCACC 58.086 37.500 0.00 0.00 42.32 4.02
438 439 7.843490 AAAGGAAAAAGTAAAGCCTTTTCAC 57.157 32.000 0.00 0.00 44.20 3.18
443 444 4.808895 CGCAAAAGGAAAAAGTAAAGCCTT 59.191 37.500 0.00 0.00 40.49 4.35
444 445 4.098807 TCGCAAAAGGAAAAAGTAAAGCCT 59.901 37.500 0.00 0.00 0.00 4.58
445 446 4.364860 TCGCAAAAGGAAAAAGTAAAGCC 58.635 39.130 0.00 0.00 0.00 4.35
446 447 5.959652 TTCGCAAAAGGAAAAAGTAAAGC 57.040 34.783 0.00 0.00 0.00 3.51
447 448 7.692908 TCATTCGCAAAAGGAAAAAGTAAAG 57.307 32.000 0.00 0.00 0.00 1.85
448 449 8.480643 TTTCATTCGCAAAAGGAAAAAGTAAA 57.519 26.923 6.27 0.00 0.00 2.01
449 450 8.480643 TTTTCATTCGCAAAAGGAAAAAGTAA 57.519 26.923 15.05 0.00 35.30 2.24
450 451 8.480643 TTTTTCATTCGCAAAAGGAAAAAGTA 57.519 26.923 20.87 8.00 40.49 2.24
451 452 6.976636 TTTTCATTCGCAAAAGGAAAAAGT 57.023 29.167 15.05 0.00 35.30 2.66
459 460 5.408204 AAAGCCTTTTTCATTCGCAAAAG 57.592 34.783 0.00 0.00 38.98 2.27
460 461 6.045955 AGTAAAGCCTTTTTCATTCGCAAAA 58.954 32.000 0.00 0.00 0.00 2.44
461 462 5.596845 AGTAAAGCCTTTTTCATTCGCAAA 58.403 33.333 0.00 0.00 0.00 3.68
462 463 5.195001 AGTAAAGCCTTTTTCATTCGCAA 57.805 34.783 0.00 0.00 0.00 4.85
463 464 4.846779 AGTAAAGCCTTTTTCATTCGCA 57.153 36.364 0.00 0.00 0.00 5.10
464 465 5.219633 TGAAGTAAAGCCTTTTTCATTCGC 58.780 37.500 0.00 0.00 0.00 4.70
465 466 6.918022 AGTTGAAGTAAAGCCTTTTTCATTCG 59.082 34.615 5.41 0.00 0.00 3.34
466 467 7.306807 GCAGTTGAAGTAAAGCCTTTTTCATTC 60.307 37.037 5.41 3.52 0.00 2.67
467 468 6.479990 GCAGTTGAAGTAAAGCCTTTTTCATT 59.520 34.615 5.41 0.00 0.00 2.57
468 469 5.985530 GCAGTTGAAGTAAAGCCTTTTTCAT 59.014 36.000 5.41 0.00 0.00 2.57
469 470 5.348164 GCAGTTGAAGTAAAGCCTTTTTCA 58.652 37.500 0.00 0.00 0.00 2.69
470 471 4.745125 GGCAGTTGAAGTAAAGCCTTTTTC 59.255 41.667 0.00 0.00 38.21 2.29
471 472 4.161377 TGGCAGTTGAAGTAAAGCCTTTTT 59.839 37.500 0.00 0.00 40.52 1.94
472 473 3.704061 TGGCAGTTGAAGTAAAGCCTTTT 59.296 39.130 0.00 0.00 40.52 2.27
473 474 3.295973 TGGCAGTTGAAGTAAAGCCTTT 58.704 40.909 0.00 0.00 40.52 3.11
474 475 2.944129 TGGCAGTTGAAGTAAAGCCTT 58.056 42.857 0.00 0.00 40.52 4.35
475 476 2.656947 TGGCAGTTGAAGTAAAGCCT 57.343 45.000 0.00 0.00 40.52 4.58
476 477 2.819608 TCATGGCAGTTGAAGTAAAGCC 59.180 45.455 0.00 0.00 40.37 4.35
477 478 4.708726 ATCATGGCAGTTGAAGTAAAGC 57.291 40.909 0.00 0.00 0.00 3.51
478 479 6.149973 TCTGAATCATGGCAGTTGAAGTAAAG 59.850 38.462 0.00 0.00 33.90 1.85
479 480 6.003326 TCTGAATCATGGCAGTTGAAGTAAA 58.997 36.000 0.00 0.00 33.90 2.01
480 481 5.559770 TCTGAATCATGGCAGTTGAAGTAA 58.440 37.500 0.00 0.00 33.90 2.24
481 482 5.164620 TCTGAATCATGGCAGTTGAAGTA 57.835 39.130 0.00 0.00 33.90 2.24
482 483 4.025040 TCTGAATCATGGCAGTTGAAGT 57.975 40.909 0.00 0.00 33.90 3.01
483 484 4.458295 ACTTCTGAATCATGGCAGTTGAAG 59.542 41.667 0.00 10.45 33.90 3.02
484 485 4.401022 ACTTCTGAATCATGGCAGTTGAA 58.599 39.130 0.00 1.34 33.90 2.69
485 486 4.005650 GACTTCTGAATCATGGCAGTTGA 58.994 43.478 0.00 0.00 33.90 3.18
486 487 3.128242 GGACTTCTGAATCATGGCAGTTG 59.872 47.826 0.00 0.00 33.90 3.16
487 488 3.009916 AGGACTTCTGAATCATGGCAGTT 59.990 43.478 0.00 0.00 33.90 3.16
488 489 2.575279 AGGACTTCTGAATCATGGCAGT 59.425 45.455 0.00 0.00 33.90 4.40
489 490 3.204526 GAGGACTTCTGAATCATGGCAG 58.795 50.000 0.00 0.00 0.00 4.85
490 491 2.573009 TGAGGACTTCTGAATCATGGCA 59.427 45.455 0.00 0.00 0.00 4.92
491 492 3.204526 CTGAGGACTTCTGAATCATGGC 58.795 50.000 0.00 0.00 0.00 4.40
492 493 3.118334 AGCTGAGGACTTCTGAATCATGG 60.118 47.826 0.00 0.00 0.00 3.66
493 494 4.139859 AGCTGAGGACTTCTGAATCATG 57.860 45.455 0.00 0.00 0.00 3.07
494 495 4.383989 GGAAGCTGAGGACTTCTGAATCAT 60.384 45.833 3.76 0.00 42.58 2.45
495 496 3.055530 GGAAGCTGAGGACTTCTGAATCA 60.056 47.826 3.76 0.00 42.58 2.57
496 497 3.197549 AGGAAGCTGAGGACTTCTGAATC 59.802 47.826 3.76 0.00 42.58 2.52
497 498 3.055240 CAGGAAGCTGAGGACTTCTGAAT 60.055 47.826 3.76 0.00 42.58 2.57
498 499 2.301296 CAGGAAGCTGAGGACTTCTGAA 59.699 50.000 3.76 0.00 42.58 3.02
499 500 1.898472 CAGGAAGCTGAGGACTTCTGA 59.102 52.381 3.76 0.00 42.58 3.27
500 501 1.898472 TCAGGAAGCTGAGGACTTCTG 59.102 52.381 3.76 0.00 42.58 3.02
501 502 1.899142 GTCAGGAAGCTGAGGACTTCT 59.101 52.381 3.76 0.00 42.58 2.85
502 503 1.403514 CGTCAGGAAGCTGAGGACTTC 60.404 57.143 0.00 0.00 42.30 3.01
503 504 0.605589 CGTCAGGAAGCTGAGGACTT 59.394 55.000 0.00 0.00 40.46 3.01
504 505 0.251386 TCGTCAGGAAGCTGAGGACT 60.251 55.000 0.00 0.00 41.46 3.85
505 506 2.268022 TCGTCAGGAAGCTGAGGAC 58.732 57.895 0.00 0.00 41.46 3.85
506 507 1.251527 GGTCGTCAGGAAGCTGAGGA 61.252 60.000 0.00 0.00 43.26 3.71
507 508 1.216710 GGTCGTCAGGAAGCTGAGG 59.783 63.158 0.00 0.00 39.68 3.86
508 509 1.216710 GGGTCGTCAGGAAGCTGAG 59.783 63.158 0.00 0.00 33.58 3.35
509 510 2.636412 CGGGTCGTCAGGAAGCTGA 61.636 63.158 0.00 0.00 0.00 4.26
510 511 2.125912 CGGGTCGTCAGGAAGCTG 60.126 66.667 0.00 0.00 0.00 4.24
511 512 0.896940 TAACGGGTCGTCAGGAAGCT 60.897 55.000 0.00 0.00 39.99 3.74
512 513 0.175073 ATAACGGGTCGTCAGGAAGC 59.825 55.000 0.00 0.00 39.99 3.86
513 514 2.094390 TCAATAACGGGTCGTCAGGAAG 60.094 50.000 0.00 0.00 39.99 3.46
514 515 1.894466 TCAATAACGGGTCGTCAGGAA 59.106 47.619 0.00 0.00 39.99 3.36
515 516 1.203052 GTCAATAACGGGTCGTCAGGA 59.797 52.381 0.00 0.00 39.99 3.86
516 517 1.067425 TGTCAATAACGGGTCGTCAGG 60.067 52.381 0.00 0.00 39.99 3.86
521 522 4.939509 AAAGATTGTCAATAACGGGTCG 57.060 40.909 0.00 0.00 0.00 4.79
527 528 7.809806 GCTGGCCATATAAAGATTGTCAATAAC 59.190 37.037 5.51 0.00 0.00 1.89
536 537 6.372659 CGTTATGAGCTGGCCATATAAAGATT 59.627 38.462 5.51 0.00 0.00 2.40
542 543 4.617253 AACGTTATGAGCTGGCCATATA 57.383 40.909 5.51 0.13 0.00 0.86
557 558 5.231991 GGTGACTCGACAAAGTTAAACGTTA 59.768 40.000 0.00 0.00 0.00 3.18
652 658 6.441274 CATCCTGTATTGTTGATGTAATGCC 58.559 40.000 0.00 0.00 32.00 4.40
677 683 8.686397 TGTGATTATTTGTTGCAATGTACATC 57.314 30.769 9.23 0.00 0.00 3.06
712 744 6.238759 GCCTGATCGCATATAGTTTCCTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
717 749 3.433615 GTGCCTGATCGCATATAGTTTCC 59.566 47.826 0.00 0.00 41.70 3.13
718 750 4.058124 TGTGCCTGATCGCATATAGTTTC 58.942 43.478 0.00 0.00 41.70 2.78
720 752 3.751479 TGTGCCTGATCGCATATAGTT 57.249 42.857 0.00 0.00 41.70 2.24
721 753 3.259123 TCATGTGCCTGATCGCATATAGT 59.741 43.478 4.88 0.00 38.38 2.12
722 754 3.615937 GTCATGTGCCTGATCGCATATAG 59.384 47.826 4.88 1.93 38.38 1.31
723 755 3.006752 TGTCATGTGCCTGATCGCATATA 59.993 43.478 4.88 0.00 38.38 0.86
745 777 2.105821 TCGTTCATGTGACCCTTCCTTT 59.894 45.455 0.00 0.00 0.00 3.11
764 796 5.276584 CGATATGTGGCTTTTCTCTTCTTCG 60.277 44.000 0.00 0.00 0.00 3.79
1050 1082 0.527565 GCAAGCATGGAATGGAACGT 59.472 50.000 0.00 0.00 46.86 3.99
1051 1083 0.523968 CGCAAGCATGGAATGGAACG 60.524 55.000 0.00 0.00 46.86 3.95
1086 1121 1.584175 TAACCGTGCGTGACAAACAT 58.416 45.000 0.00 0.00 0.00 2.71
1958 2016 0.179023 TTGATGATGCCTGCGCCATA 60.179 50.000 4.18 0.00 0.00 2.74
2122 2180 1.607467 CTTGCCCTTGAGGTTGGGG 60.607 63.158 0.00 0.00 43.53 4.96
2371 2491 0.038618 TGACCTTGACCATGTCGTCG 60.039 55.000 0.00 0.00 34.95 5.12
2487 2607 0.242017 GTCACTTCACAGGGCAATGC 59.758 55.000 0.00 0.00 0.00 3.56
2488 2608 1.808945 GAGTCACTTCACAGGGCAATG 59.191 52.381 0.00 0.00 0.00 2.82
2713 2833 7.835805 TCAGAACCTGGCAAACGATAGTACG 62.836 48.000 0.00 0.00 39.56 3.67
2714 2834 4.619863 TCAGAACCTGGCAAACGATAGTAC 60.620 45.833 0.00 0.00 39.56 2.73
2878 3008 5.700373 TGTGCTCCCTTAAATTTTGCAATTC 59.300 36.000 0.00 0.00 30.80 2.17
2978 3108 6.478016 CAGATCGCAATCTCTTATCTTGTGAA 59.522 38.462 2.37 0.00 40.38 3.18
3016 3151 7.157347 TCTAAGTAGTTCATGCCATCATCATC 58.843 38.462 0.00 0.00 0.00 2.92
3017 3152 7.015974 TCTCTAAGTAGTTCATGCCATCATCAT 59.984 37.037 0.00 0.00 0.00 2.45
3018 3153 6.324770 TCTCTAAGTAGTTCATGCCATCATCA 59.675 38.462 0.00 0.00 0.00 3.07
3131 3270 5.463392 CCATATATTCTTGACCACTCACACG 59.537 44.000 0.00 0.00 0.00 4.49
3179 3318 2.039613 TGGTCTGTGCATTGTATGGTCA 59.960 45.455 0.00 0.00 0.00 4.02
3446 3591 7.451281 CACTTAGTGTATTTAGTGTCATCCG 57.549 40.000 3.88 0.00 34.68 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.