Multiple sequence alignment - TraesCS2D01G315500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G315500 chr2D 100.000 2919 0 0 1 2919 405072412 405075330 0.000000e+00 5391.0
1 TraesCS2D01G315500 chr2D 90.939 309 28 0 1529 1837 405073865 405074173 1.620000e-112 416.0
2 TraesCS2D01G315500 chr2D 90.939 309 28 0 1454 1762 405073940 405074248 1.620000e-112 416.0
3 TraesCS2D01G315500 chr2D 93.506 77 5 0 2843 2919 237246293 237246369 6.610000e-22 115.0
4 TraesCS2D01G315500 chr2B 91.631 1183 72 11 993 2175 479984982 479986137 0.000000e+00 1611.0
5 TraesCS2D01G315500 chr2B 90.190 683 54 8 1 678 479984057 479984731 0.000000e+00 878.0
6 TraesCS2D01G315500 chr2B 90.291 309 30 0 1454 1762 479985512 479985820 3.500000e-109 405.0
7 TraesCS2D01G315500 chr2B 91.453 234 20 0 1604 1837 479985437 479985670 3.630000e-84 322.0
8 TraesCS2D01G315500 chr2B 92.093 215 8 5 687 895 479984706 479984917 7.910000e-76 294.0
9 TraesCS2D01G315500 chr2A 89.176 1201 70 21 683 1834 543156597 543157786 0.000000e+00 1443.0
10 TraesCS2D01G315500 chr2A 87.775 728 53 14 1454 2175 543157475 543158172 0.000000e+00 819.0
11 TraesCS2D01G315500 chr2A 95.683 278 6 4 400 676 543156344 543156616 2.670000e-120 442.0
12 TraesCS2D01G315500 chr2A 88.571 315 30 4 1529 1837 543157400 543157714 7.640000e-101 377.0
13 TraesCS2D01G315500 chr2A 84.047 257 36 2 2184 2440 543158239 543158490 2.910000e-60 243.0
14 TraesCS2D01G315500 chr2A 93.082 159 11 0 1679 1837 543157400 543157558 1.750000e-57 233.0
15 TraesCS2D01G315500 chr2A 93.750 80 4 1 2840 2919 692158957 692159035 5.110000e-23 119.0
16 TraesCS2D01G315500 chr3D 86.772 189 21 4 1 187 332234662 332234848 1.060000e-49 207.0
17 TraesCS2D01G315500 chr3D 92.771 83 5 1 2837 2919 552651623 552651542 5.110000e-23 119.0
18 TraesCS2D01G315500 chr3D 92.500 80 5 1 2840 2919 224671144 224671222 2.380000e-21 113.0
19 TraesCS2D01G315500 chr7A 86.559 186 22 2 1 185 194789858 194790041 4.930000e-48 202.0
20 TraesCS2D01G315500 chr7D 85.792 183 24 2 1 182 563605576 563605757 2.970000e-45 193.0
21 TraesCS2D01G315500 chr7D 93.506 77 5 0 2843 2919 136234260 136234184 6.610000e-22 115.0
22 TraesCS2D01G315500 chr5B 83.422 187 26 4 1 184 712961903 712962087 5.000000e-38 169.0
23 TraesCS2D01G315500 chr1A 85.106 141 10 1 2 142 64807322 64807451 1.820000e-27 134.0
24 TraesCS2D01G315500 chr5A 93.590 78 4 1 2843 2919 223719266 223719189 6.610000e-22 115.0
25 TraesCS2D01G315500 chr5A 93.590 78 4 1 2843 2919 223764600 223764523 6.610000e-22 115.0
26 TraesCS2D01G315500 chr4A 93.506 77 5 0 2843 2919 295927537 295927613 6.610000e-22 115.0
27 TraesCS2D01G315500 chr4A 89.535 86 8 1 2834 2919 13050219 13050135 1.110000e-19 108.0
28 TraesCS2D01G315500 chr7B 88.710 62 7 0 1 62 613197680 613197741 3.120000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G315500 chr2D 405072412 405075330 2918 False 2074.333333 5391 93.959333 1 2919 3 chr2D.!!$F2 2918
1 TraesCS2D01G315500 chr2B 479984057 479986137 2080 False 702.000000 1611 91.131600 1 2175 5 chr2B.!!$F1 2174
2 TraesCS2D01G315500 chr2A 543156344 543158490 2146 False 592.833333 1443 89.722333 400 2440 6 chr2A.!!$F2 2040

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 984 0.035343 TCTCGACCGTCTCACTCCAT 60.035 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2846 3061 0.028902 GTTTTGACACCGACAGCCAC 59.971 55.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.323477 CGACCACCCGCCCTGAAA 62.323 66.667 0.00 0.00 0.00 2.69
46 47 3.365265 CACCCGCCCTGAAACTGC 61.365 66.667 0.00 0.00 0.00 4.40
52 53 2.334946 GCCCTGAAACTGCGATGCA 61.335 57.895 0.00 0.00 36.92 3.96
109 111 2.356278 GCTGGGGATGGAGCAACA 59.644 61.111 0.00 0.00 35.15 3.33
110 112 1.304381 GCTGGGGATGGAGCAACAA 60.304 57.895 0.00 0.00 35.15 2.83
132 134 2.844839 GGACTGGCGGCTAGGGAT 60.845 66.667 17.93 0.00 0.00 3.85
146 148 2.447959 GGATCGGGGGCCCTTAGT 60.448 66.667 24.38 5.79 0.00 2.24
208 210 7.363268 GGGAGCTATGATGTTGATGTTTTTCTT 60.363 37.037 0.00 0.00 0.00 2.52
209 211 7.487189 GGAGCTATGATGTTGATGTTTTTCTTG 59.513 37.037 0.00 0.00 0.00 3.02
218 220 8.017418 TGTTGATGTTTTTCTTGATAAAGGGT 57.983 30.769 0.00 0.00 0.00 4.34
221 223 8.017418 TGATGTTTTTCTTGATAAAGGGTGTT 57.983 30.769 0.00 0.00 0.00 3.32
248 250 3.542712 AACGCAACAAGTAGCATCAAG 57.457 42.857 0.00 0.00 0.00 3.02
337 339 6.769512 AGGCAACAAGTCTAACATAGAAAGA 58.230 36.000 0.00 0.00 36.02 2.52
421 425 5.233083 TCTATTCTAACCAGCCATGATGG 57.767 43.478 7.21 7.21 45.59 3.51
581 585 0.466189 GACGCATGGGTCCCATCATT 60.466 55.000 27.72 7.39 43.15 2.57
654 659 2.549754 CGGTAGCCATTCACATTCATCC 59.450 50.000 0.00 0.00 0.00 3.51
655 660 2.887152 GGTAGCCATTCACATTCATCCC 59.113 50.000 0.00 0.00 0.00 3.85
656 661 3.435601 GGTAGCCATTCACATTCATCCCT 60.436 47.826 0.00 0.00 0.00 4.20
657 662 2.941480 AGCCATTCACATTCATCCCTC 58.059 47.619 0.00 0.00 0.00 4.30
658 663 2.512896 AGCCATTCACATTCATCCCTCT 59.487 45.455 0.00 0.00 0.00 3.69
659 664 3.053095 AGCCATTCACATTCATCCCTCTT 60.053 43.478 0.00 0.00 0.00 2.85
660 665 3.317430 GCCATTCACATTCATCCCTCTTC 59.683 47.826 0.00 0.00 0.00 2.87
661 666 3.887716 CCATTCACATTCATCCCTCTTCC 59.112 47.826 0.00 0.00 0.00 3.46
662 667 4.386088 CCATTCACATTCATCCCTCTTCCT 60.386 45.833 0.00 0.00 0.00 3.36
663 668 4.494091 TTCACATTCATCCCTCTTCCTC 57.506 45.455 0.00 0.00 0.00 3.71
664 669 3.729108 TCACATTCATCCCTCTTCCTCT 58.271 45.455 0.00 0.00 0.00 3.69
665 670 3.708631 TCACATTCATCCCTCTTCCTCTC 59.291 47.826 0.00 0.00 0.00 3.20
666 671 3.710677 CACATTCATCCCTCTTCCTCTCT 59.289 47.826 0.00 0.00 0.00 3.10
667 672 3.966665 ACATTCATCCCTCTTCCTCTCTC 59.033 47.826 0.00 0.00 0.00 3.20
668 673 4.225573 CATTCATCCCTCTTCCTCTCTCT 58.774 47.826 0.00 0.00 0.00 3.10
669 674 3.593442 TCATCCCTCTTCCTCTCTCTC 57.407 52.381 0.00 0.00 0.00 3.20
670 675 3.130450 TCATCCCTCTTCCTCTCTCTCT 58.870 50.000 0.00 0.00 0.00 3.10
671 676 3.138283 TCATCCCTCTTCCTCTCTCTCTC 59.862 52.174 0.00 0.00 0.00 3.20
672 677 2.858644 TCCCTCTTCCTCTCTCTCTCT 58.141 52.381 0.00 0.00 0.00 3.10
673 678 2.777692 TCCCTCTTCCTCTCTCTCTCTC 59.222 54.545 0.00 0.00 0.00 3.20
674 679 2.780010 CCCTCTTCCTCTCTCTCTCTCT 59.220 54.545 0.00 0.00 0.00 3.10
675 680 3.181450 CCCTCTTCCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
676 681 3.713764 CCTCTTCCTCTCTCTCTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
677 682 4.202305 CCTCTTCCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
678 683 4.624913 TCTTCCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
679 684 4.651503 TCTTCCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
680 685 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
681 686 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
682 687 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
683 688 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
684 689 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
685 690 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
686 691 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
687 692 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
688 693 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
689 694 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
696 701 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
711 716 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
715 720 2.236146 TCTCTCTCTCTCTCTCTTGCGT 59.764 50.000 0.00 0.00 0.00 5.24
742 758 7.348537 GGGAGAGTCCTTGGGCTATATAAATAT 59.651 40.741 0.00 0.00 36.57 1.28
777 802 4.068257 CCCCCTCTCCAACCCTAC 57.932 66.667 0.00 0.00 0.00 3.18
869 900 1.828595 TGAGTGCGTTAATGCCTAGGA 59.171 47.619 14.75 0.00 0.00 2.94
879 910 0.598562 ATGCCTAGGATCGTACGCTG 59.401 55.000 14.75 0.00 0.00 5.18
895 926 2.288457 ACGCTGCGAGCATCTACATATT 60.288 45.455 30.47 0.00 42.58 1.28
913 961 1.486145 TTCACCCCGGACCTTTCTCC 61.486 60.000 0.73 0.00 0.00 3.71
914 962 2.609921 ACCCCGGACCTTTCTCCC 60.610 66.667 0.73 0.00 0.00 4.30
915 963 3.782443 CCCCGGACCTTTCTCCCG 61.782 72.222 0.73 0.00 42.64 5.14
919 967 1.982938 CGGACCTTTCTCCCGGTCT 60.983 63.158 0.00 0.00 46.94 3.85
920 968 1.898885 GGACCTTTCTCCCGGTCTC 59.101 63.158 0.00 0.00 46.94 3.36
921 969 1.511768 GACCTTTCTCCCGGTCTCG 59.488 63.158 0.00 0.00 44.90 4.04
922 970 0.964358 GACCTTTCTCCCGGTCTCGA 60.964 60.000 0.00 0.00 44.90 4.04
933 981 1.795507 GGTCTCGACCGTCTCACTC 59.204 63.158 0.00 0.00 42.29 3.51
936 984 0.035343 TCTCGACCGTCTCACTCCAT 60.035 55.000 0.00 0.00 0.00 3.41
937 985 0.378962 CTCGACCGTCTCACTCCATC 59.621 60.000 0.00 0.00 0.00 3.51
938 986 0.035343 TCGACCGTCTCACTCCATCT 60.035 55.000 0.00 0.00 0.00 2.90
939 987 0.378962 CGACCGTCTCACTCCATCTC 59.621 60.000 0.00 0.00 0.00 2.75
940 988 0.741915 GACCGTCTCACTCCATCTCC 59.258 60.000 0.00 0.00 0.00 3.71
941 989 1.032657 ACCGTCTCACTCCATCTCCG 61.033 60.000 0.00 0.00 0.00 4.63
994 1046 1.605710 GCGCTGTGGATCATAAGCAAT 59.394 47.619 0.00 0.00 35.33 3.56
1011 1063 2.947938 AATCTTCCATGGAGCCGCCG 62.948 60.000 15.53 1.13 40.66 6.46
1170 1240 3.932710 CTCTCCTTCTCCTATCGATCGAG 59.067 52.174 23.84 10.61 0.00 4.04
1203 1273 2.603652 GGGCGTGTGTTTGTTATGTGTC 60.604 50.000 0.00 0.00 0.00 3.67
1327 1403 1.815840 GGCTAGCAAGAAGGCGGAC 60.816 63.158 18.24 0.00 39.27 4.79
1621 1697 0.693049 ACAAGAAGCCCAAGGTCGAT 59.307 50.000 0.00 0.00 0.00 3.59
1632 1711 4.593864 GGTCGATGAGAGGCCGGC 62.594 72.222 21.18 21.18 0.00 6.13
1843 2000 1.911293 GCGACAAGAAGCCGATGCAA 61.911 55.000 0.00 0.00 41.13 4.08
1853 2010 2.436646 CGATGCAAGCGGGGAAGT 60.437 61.111 0.00 0.00 45.34 3.01
1920 2077 1.691434 AGAGGTGATTAGCTGCTAGCC 59.309 52.381 13.29 10.60 43.77 3.93
1958 2115 0.038310 GGGGAAGTAGCTGGCAACTT 59.962 55.000 2.81 2.81 38.62 2.66
1976 2133 4.503714 ACTTAGCCAAATAGCTAGCCAA 57.496 40.909 12.13 0.00 45.69 4.52
1978 2135 2.806945 AGCCAAATAGCTAGCCAACA 57.193 45.000 12.13 0.00 42.70 3.33
1986 2143 2.698855 AGCTAGCCAACATCGACATT 57.301 45.000 12.13 0.00 0.00 2.71
1987 2144 2.283298 AGCTAGCCAACATCGACATTG 58.717 47.619 12.13 3.92 0.00 2.82
1988 2145 1.331756 GCTAGCCAACATCGACATTGG 59.668 52.381 20.43 20.43 46.92 3.16
1989 2146 2.632377 CTAGCCAACATCGACATTGGT 58.368 47.619 23.66 15.66 46.07 3.67
1990 2147 1.167851 AGCCAACATCGACATTGGTG 58.832 50.000 23.66 12.29 46.07 4.17
2011 2168 5.006358 GGTGATTTGGTGTCGATGTATGTAC 59.994 44.000 0.00 0.00 0.00 2.90
2075 2232 1.008329 GAGAGAGTCGACTACCGTGG 58.992 60.000 20.09 0.00 39.75 4.94
2088 2245 1.516386 CCGTGGTAGCGCTGTACAG 60.516 63.158 22.90 18.93 0.00 2.74
2096 2253 4.158949 TGGTAGCGCTGTACAGATCTTAAA 59.841 41.667 27.08 3.68 0.00 1.52
2109 2266 7.653767 ACAGATCTTAAACCGTCAGTTTTAG 57.346 36.000 0.00 0.00 46.79 1.85
2110 2267 7.215085 ACAGATCTTAAACCGTCAGTTTTAGT 58.785 34.615 0.00 0.00 46.79 2.24
2111 2268 8.362639 ACAGATCTTAAACCGTCAGTTTTAGTA 58.637 33.333 0.00 0.00 46.79 1.82
2156 2313 2.433436 GGGCGGTTTGACTTTATGTCT 58.567 47.619 0.17 0.00 45.54 3.41
2161 2318 2.492088 GGTTTGACTTTATGTCTGGGCC 59.508 50.000 0.00 0.00 45.54 5.80
2176 2333 3.869272 GCCGCGATGAGCTGGTTG 61.869 66.667 8.23 0.00 45.59 3.77
2177 2334 3.869272 CCGCGATGAGCTGGTTGC 61.869 66.667 8.23 0.00 45.59 4.17
2195 2410 1.079405 CTCCGTGCGGTGGTATGTT 60.079 57.895 10.60 0.00 36.47 2.71
2198 2413 2.395360 CGTGCGGTGGTATGTTGGG 61.395 63.158 0.00 0.00 0.00 4.12
2205 2420 1.101049 GTGGTATGTTGGGGCGATGG 61.101 60.000 0.00 0.00 0.00 3.51
2234 2449 2.360553 AGAGATGAGTCAGTGCAACG 57.639 50.000 0.00 0.00 45.86 4.10
2236 2451 0.671781 AGATGAGTCAGTGCAACGGC 60.672 55.000 0.00 0.00 45.86 5.68
2245 2460 2.672651 TGCAACGGCCATGGTCTG 60.673 61.111 15.80 13.54 40.13 3.51
2246 2461 4.120331 GCAACGGCCATGGTCTGC 62.120 66.667 15.80 14.86 0.00 4.26
2257 2472 0.319083 ATGGTCTGCGAACGGTTACA 59.681 50.000 0.00 0.00 0.00 2.41
2259 2474 0.319297 GGTCTGCGAACGGTTACACT 60.319 55.000 0.00 0.00 0.00 3.55
2267 2482 1.862827 GAACGGTTACACTTCGCAACT 59.137 47.619 0.00 0.00 0.00 3.16
2271 2486 2.410730 CGGTTACACTTCGCAACTTAGG 59.589 50.000 0.00 0.00 0.00 2.69
2288 2503 0.989602 AGGTTGTAGGTGGTTAGGCC 59.010 55.000 0.00 0.00 37.90 5.19
2293 2508 1.914263 TAGGTGGTTAGGCCGTGCA 60.914 57.895 0.00 0.00 41.21 4.57
2294 2509 1.895020 TAGGTGGTTAGGCCGTGCAG 61.895 60.000 0.00 0.00 41.21 4.41
2297 2512 2.438434 GGTTAGGCCGTGCAGCAT 60.438 61.111 0.00 0.00 0.00 3.79
2298 2513 2.046285 GGTTAGGCCGTGCAGCATT 61.046 57.895 0.00 0.00 0.00 3.56
2329 2544 0.108329 GTGAGTGGTGGTATGTCGGG 60.108 60.000 0.00 0.00 0.00 5.14
2330 2545 1.261938 TGAGTGGTGGTATGTCGGGG 61.262 60.000 0.00 0.00 0.00 5.73
2331 2546 1.229400 AGTGGTGGTATGTCGGGGT 60.229 57.895 0.00 0.00 0.00 4.95
2334 2549 2.295602 GGTGGTATGTCGGGGTGGT 61.296 63.158 0.00 0.00 0.00 4.16
2348 2563 2.852075 TGGTGGCCCTCGAAGGTT 60.852 61.111 0.00 0.00 31.93 3.50
2354 2569 1.262640 GGCCCTCGAAGGTTAGGTCA 61.263 60.000 1.20 0.00 31.93 4.02
2357 2572 2.731572 CCCTCGAAGGTTAGGTCAGTA 58.268 52.381 0.00 0.00 31.93 2.74
2362 2577 2.734492 CGAAGGTTAGGTCAGTAAGCCG 60.734 54.545 0.00 0.00 31.90 5.52
2369 2584 0.391263 GGTCAGTAAGCCGGTCAAGG 60.391 60.000 1.90 0.00 0.00 3.61
2372 2587 0.741221 CAGTAAGCCGGTCAAGGAGC 60.741 60.000 1.90 0.00 0.00 4.70
2384 2599 2.943978 AAGGAGCCCAAGGTCGACG 61.944 63.158 9.92 0.00 41.62 5.12
2394 2609 2.493907 AAGGTCGACGAGAAGCCAGC 62.494 60.000 9.92 0.00 0.00 4.85
2396 2611 4.778415 TCGACGAGAAGCCAGCGC 62.778 66.667 0.00 0.00 0.00 5.92
2418 2633 2.607750 ACTGTCGCTGGGGATGGT 60.608 61.111 0.00 0.00 0.00 3.55
2433 2648 0.988832 ATGGTAGCGAAGGGGAACAA 59.011 50.000 0.00 0.00 0.00 2.83
2440 2655 1.519408 CGAAGGGGAACAACAACGAT 58.481 50.000 0.00 0.00 0.00 3.73
2441 2656 1.196808 CGAAGGGGAACAACAACGATG 59.803 52.381 0.00 0.00 0.00 3.84
2442 2657 2.500229 GAAGGGGAACAACAACGATGA 58.500 47.619 0.00 0.00 0.00 2.92
2443 2658 2.185004 AGGGGAACAACAACGATGAG 57.815 50.000 0.00 0.00 0.00 2.90
2444 2659 1.697432 AGGGGAACAACAACGATGAGA 59.303 47.619 0.00 0.00 0.00 3.27
2445 2660 2.105821 AGGGGAACAACAACGATGAGAA 59.894 45.455 0.00 0.00 0.00 2.87
2446 2661 2.484264 GGGGAACAACAACGATGAGAAG 59.516 50.000 0.00 0.00 0.00 2.85
2447 2662 2.095718 GGGAACAACAACGATGAGAAGC 60.096 50.000 0.00 0.00 0.00 3.86
2448 2663 2.095718 GGAACAACAACGATGAGAAGCC 60.096 50.000 0.00 0.00 0.00 4.35
2449 2664 1.148310 ACAACAACGATGAGAAGCCG 58.852 50.000 0.00 0.00 0.00 5.52
2450 2665 1.270094 ACAACAACGATGAGAAGCCGA 60.270 47.619 0.00 0.00 0.00 5.54
2451 2666 2.002586 CAACAACGATGAGAAGCCGAT 58.997 47.619 0.00 0.00 0.00 4.18
2452 2667 1.645034 ACAACGATGAGAAGCCGATG 58.355 50.000 0.00 0.00 33.35 3.84
2453 2668 0.302890 CAACGATGAGAAGCCGATGC 59.697 55.000 0.00 0.00 37.95 3.91
2454 2669 0.108186 AACGATGAGAAGCCGATGCA 60.108 50.000 0.00 0.00 41.13 3.96
2455 2670 0.529337 ACGATGAGAAGCCGATGCAG 60.529 55.000 0.00 0.00 41.13 4.41
2456 2671 1.220169 CGATGAGAAGCCGATGCAGG 61.220 60.000 0.00 0.00 41.13 4.85
2464 2679 3.403277 CCGATGCAGGCGAGAAAG 58.597 61.111 12.70 0.00 0.00 2.62
2465 2680 1.448540 CCGATGCAGGCGAGAAAGT 60.449 57.895 12.70 0.00 0.00 2.66
2466 2681 1.021390 CCGATGCAGGCGAGAAAGTT 61.021 55.000 12.70 0.00 0.00 2.66
2467 2682 0.095935 CGATGCAGGCGAGAAAGTTG 59.904 55.000 5.91 0.00 0.00 3.16
2468 2683 0.449388 GATGCAGGCGAGAAAGTTGG 59.551 55.000 0.00 0.00 0.00 3.77
2469 2684 1.589716 ATGCAGGCGAGAAAGTTGGC 61.590 55.000 0.00 0.00 35.16 4.52
2470 2685 2.863153 CAGGCGAGAAAGTTGGCG 59.137 61.111 0.00 0.00 40.26 5.69
2473 2688 4.445545 GCGAGAAAGTTGGCGCGG 62.446 66.667 8.83 0.00 40.06 6.46
2474 2689 4.445545 CGAGAAAGTTGGCGCGGC 62.446 66.667 27.61 27.61 0.00 6.53
2475 2690 3.050275 GAGAAAGTTGGCGCGGCT 61.050 61.111 33.23 13.23 0.00 5.52
2476 2691 3.314388 GAGAAAGTTGGCGCGGCTG 62.314 63.158 33.23 0.00 0.00 4.85
2477 2692 4.404654 GAAAGTTGGCGCGGCTGG 62.405 66.667 33.23 0.00 0.00 4.85
2487 2702 3.712907 GCGGCTGGGTAGGGTCAA 61.713 66.667 0.00 0.00 0.00 3.18
2488 2703 2.584608 CGGCTGGGTAGGGTCAAG 59.415 66.667 0.00 0.00 0.00 3.02
2489 2704 2.998949 GGCTGGGTAGGGTCAAGG 59.001 66.667 0.00 0.00 0.00 3.61
2490 2705 1.923909 GGCTGGGTAGGGTCAAGGT 60.924 63.158 0.00 0.00 0.00 3.50
2491 2706 1.299976 GCTGGGTAGGGTCAAGGTG 59.700 63.158 0.00 0.00 0.00 4.00
2492 2707 1.198759 GCTGGGTAGGGTCAAGGTGA 61.199 60.000 0.00 0.00 0.00 4.02
2493 2708 0.905357 CTGGGTAGGGTCAAGGTGAG 59.095 60.000 0.00 0.00 0.00 3.51
2494 2709 0.546747 TGGGTAGGGTCAAGGTGAGG 60.547 60.000 0.00 0.00 0.00 3.86
2495 2710 0.252558 GGGTAGGGTCAAGGTGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
2496 2711 1.196012 GGTAGGGTCAAGGTGAGGAG 58.804 60.000 0.00 0.00 0.00 3.69
2497 2712 1.196012 GTAGGGTCAAGGTGAGGAGG 58.804 60.000 0.00 0.00 0.00 4.30
2498 2713 0.790993 TAGGGTCAAGGTGAGGAGGT 59.209 55.000 0.00 0.00 0.00 3.85
2499 2714 0.838122 AGGGTCAAGGTGAGGAGGTG 60.838 60.000 0.00 0.00 0.00 4.00
2500 2715 1.003233 GGTCAAGGTGAGGAGGTGC 60.003 63.158 0.00 0.00 0.00 5.01
2501 2716 1.754745 GTCAAGGTGAGGAGGTGCA 59.245 57.895 0.00 0.00 0.00 4.57
2502 2717 0.108585 GTCAAGGTGAGGAGGTGCAA 59.891 55.000 0.00 0.00 0.00 4.08
2503 2718 0.843309 TCAAGGTGAGGAGGTGCAAA 59.157 50.000 0.00 0.00 0.00 3.68
2504 2719 0.954452 CAAGGTGAGGAGGTGCAAAC 59.046 55.000 0.00 0.00 0.00 2.93
2505 2720 0.846693 AAGGTGAGGAGGTGCAAACT 59.153 50.000 0.00 0.00 0.00 2.66
2506 2721 0.398318 AGGTGAGGAGGTGCAAACTC 59.602 55.000 10.41 10.41 0.00 3.01
2511 2726 3.673599 GAGGTGCAAACTCCTGGC 58.326 61.111 8.16 0.00 39.91 4.85
2512 2727 1.228245 GAGGTGCAAACTCCTGGCA 60.228 57.895 8.16 0.00 39.91 4.92
2513 2728 1.228367 AGGTGCAAACTCCTGGCAG 60.228 57.895 7.75 7.75 38.37 4.85
2514 2729 2.270986 GGTGCAAACTCCTGGCAGG 61.271 63.158 28.01 28.01 38.38 4.85
2515 2730 1.529244 GTGCAAACTCCTGGCAGGT 60.529 57.895 31.60 12.39 38.38 4.00
2516 2731 1.529010 TGCAAACTCCTGGCAGGTG 60.529 57.895 31.60 30.22 36.53 4.00
2517 2732 1.529244 GCAAACTCCTGGCAGGTGT 60.529 57.895 30.28 30.28 43.35 4.16
2518 2733 1.799258 GCAAACTCCTGGCAGGTGTG 61.799 60.000 34.56 25.43 40.88 3.82
2519 2734 0.179020 CAAACTCCTGGCAGGTGTGA 60.179 55.000 34.56 16.18 40.88 3.58
2520 2735 0.109342 AAACTCCTGGCAGGTGTGAG 59.891 55.000 34.56 25.50 40.88 3.51
2521 2736 0.764369 AACTCCTGGCAGGTGTGAGA 60.764 55.000 34.56 15.12 40.88 3.27
2522 2737 0.764369 ACTCCTGGCAGGTGTGAGAA 60.764 55.000 33.72 13.78 40.30 2.87
2523 2738 0.617413 CTCCTGGCAGGTGTGAGAAT 59.383 55.000 31.60 0.00 36.53 2.40
2524 2739 1.833630 CTCCTGGCAGGTGTGAGAATA 59.166 52.381 31.60 9.44 36.53 1.75
2525 2740 2.237143 CTCCTGGCAGGTGTGAGAATAA 59.763 50.000 31.60 8.69 36.53 1.40
2526 2741 2.642311 TCCTGGCAGGTGTGAGAATAAA 59.358 45.455 31.60 6.23 36.53 1.40
2527 2742 3.073798 TCCTGGCAGGTGTGAGAATAAAA 59.926 43.478 31.60 6.02 36.53 1.52
2528 2743 3.441572 CCTGGCAGGTGTGAGAATAAAAG 59.558 47.826 25.74 0.00 0.00 2.27
2529 2744 3.420893 TGGCAGGTGTGAGAATAAAAGG 58.579 45.455 0.00 0.00 0.00 3.11
2530 2745 2.755103 GGCAGGTGTGAGAATAAAAGGG 59.245 50.000 0.00 0.00 0.00 3.95
2531 2746 3.421844 GCAGGTGTGAGAATAAAAGGGT 58.578 45.455 0.00 0.00 0.00 4.34
2532 2747 4.566907 GGCAGGTGTGAGAATAAAAGGGTA 60.567 45.833 0.00 0.00 0.00 3.69
2533 2748 5.007682 GCAGGTGTGAGAATAAAAGGGTAA 58.992 41.667 0.00 0.00 0.00 2.85
2534 2749 5.123979 GCAGGTGTGAGAATAAAAGGGTAAG 59.876 44.000 0.00 0.00 0.00 2.34
2535 2750 5.123979 CAGGTGTGAGAATAAAAGGGTAAGC 59.876 44.000 0.00 0.00 0.00 3.09
2536 2751 5.007682 GGTGTGAGAATAAAAGGGTAAGCA 58.992 41.667 0.00 0.00 0.00 3.91
2537 2752 5.123979 GGTGTGAGAATAAAAGGGTAAGCAG 59.876 44.000 0.00 0.00 0.00 4.24
2538 2753 4.700213 TGTGAGAATAAAAGGGTAAGCAGC 59.300 41.667 0.00 0.00 0.00 5.25
2539 2754 4.944317 GTGAGAATAAAAGGGTAAGCAGCT 59.056 41.667 0.00 0.00 0.00 4.24
2540 2755 6.113411 GTGAGAATAAAAGGGTAAGCAGCTA 58.887 40.000 0.00 0.00 0.00 3.32
2541 2756 6.258947 GTGAGAATAAAAGGGTAAGCAGCTAG 59.741 42.308 0.00 0.00 0.00 3.42
2542 2757 5.126779 AGAATAAAAGGGTAAGCAGCTAGC 58.873 41.667 6.62 6.62 46.19 3.42
2547 2762 1.910580 GGGTAAGCAGCTAGCCACCA 61.911 60.000 12.13 0.00 45.93 4.17
2548 2763 3.203970 GGGTAAGCAGCTAGCCACCAT 62.204 57.143 12.13 0.00 45.93 3.55
2551 2766 2.501128 GCAGCTAGCCACCATCGA 59.499 61.111 12.13 0.00 37.23 3.59
2552 2767 1.884926 GCAGCTAGCCACCATCGAC 60.885 63.158 12.13 0.00 37.23 4.20
2553 2768 1.517361 CAGCTAGCCACCATCGACA 59.483 57.895 12.13 0.00 0.00 4.35
2554 2769 0.529337 CAGCTAGCCACCATCGACAG 60.529 60.000 12.13 0.00 0.00 3.51
2555 2770 0.684479 AGCTAGCCACCATCGACAGA 60.684 55.000 12.13 0.00 0.00 3.41
2556 2771 0.390860 GCTAGCCACCATCGACAGAT 59.609 55.000 2.29 0.00 37.65 2.90
2595 2810 7.853377 ACATCGTTTACTCGTCATATACATG 57.147 36.000 0.00 0.00 0.00 3.21
2596 2811 7.423199 ACATCGTTTACTCGTCATATACATGT 58.577 34.615 2.69 2.69 33.57 3.21
2597 2812 7.919091 ACATCGTTTACTCGTCATATACATGTT 59.081 33.333 2.30 0.00 33.57 2.71
2598 2813 8.752254 CATCGTTTACTCGTCATATACATGTTT 58.248 33.333 2.30 0.00 33.57 2.83
2599 2814 8.692110 TCGTTTACTCGTCATATACATGTTTT 57.308 30.769 2.30 0.00 33.57 2.43
2600 2815 9.142515 TCGTTTACTCGTCATATACATGTTTTT 57.857 29.630 2.30 0.00 33.57 1.94
2601 2816 9.405083 CGTTTACTCGTCATATACATGTTTTTC 57.595 33.333 2.30 0.00 33.57 2.29
2602 2817 9.698617 GTTTACTCGTCATATACATGTTTTTCC 57.301 33.333 2.30 0.00 33.57 3.13
2603 2818 9.661563 TTTACTCGTCATATACATGTTTTTCCT 57.338 29.630 2.30 0.00 33.57 3.36
2604 2819 7.772332 ACTCGTCATATACATGTTTTTCCTC 57.228 36.000 2.30 0.00 33.57 3.71
2605 2820 6.761714 ACTCGTCATATACATGTTTTTCCTCC 59.238 38.462 2.30 0.00 33.57 4.30
2606 2821 6.884832 TCGTCATATACATGTTTTTCCTCCT 58.115 36.000 2.30 0.00 33.57 3.69
2607 2822 7.335627 TCGTCATATACATGTTTTTCCTCCTT 58.664 34.615 2.30 0.00 33.57 3.36
2608 2823 7.827236 TCGTCATATACATGTTTTTCCTCCTTT 59.173 33.333 2.30 0.00 33.57 3.11
2609 2824 8.458843 CGTCATATACATGTTTTTCCTCCTTTT 58.541 33.333 2.30 0.00 33.57 2.27
2612 2827 9.927668 CATATACATGTTTTTCCTCCTTTTTGT 57.072 29.630 2.30 0.00 0.00 2.83
2615 2830 7.994425 ACATGTTTTTCCTCCTTTTTGTTTT 57.006 28.000 0.00 0.00 0.00 2.43
2616 2831 8.402798 ACATGTTTTTCCTCCTTTTTGTTTTT 57.597 26.923 0.00 0.00 0.00 1.94
2636 2851 3.944055 TTGAGAGAGTTCACTAGGTGC 57.056 47.619 0.00 0.00 32.98 5.01
2637 2852 3.162147 TGAGAGAGTTCACTAGGTGCT 57.838 47.619 0.00 0.00 32.98 4.40
2638 2853 4.302559 TGAGAGAGTTCACTAGGTGCTA 57.697 45.455 0.00 0.00 32.98 3.49
2639 2854 4.265893 TGAGAGAGTTCACTAGGTGCTAG 58.734 47.826 0.00 0.00 39.72 3.42
2640 2855 4.263550 TGAGAGAGTTCACTAGGTGCTAGT 60.264 45.833 0.00 0.00 46.75 2.57
2650 2865 5.584253 ACTAGGTGCTAGTGATGTACAAG 57.416 43.478 0.00 0.00 44.47 3.16
2651 2866 5.017490 ACTAGGTGCTAGTGATGTACAAGT 58.983 41.667 0.00 0.00 44.47 3.16
2652 2867 4.457834 AGGTGCTAGTGATGTACAAGTC 57.542 45.455 0.00 0.00 0.00 3.01
2653 2868 4.090090 AGGTGCTAGTGATGTACAAGTCT 58.910 43.478 0.00 0.99 0.00 3.24
2654 2869 5.262009 AGGTGCTAGTGATGTACAAGTCTA 58.738 41.667 0.00 2.17 0.00 2.59
2655 2870 5.358442 AGGTGCTAGTGATGTACAAGTCTAG 59.642 44.000 18.68 18.68 0.00 2.43
2656 2871 5.450688 GGTGCTAGTGATGTACAAGTCTAGG 60.451 48.000 21.65 11.35 0.00 3.02
2657 2872 5.357314 GTGCTAGTGATGTACAAGTCTAGGA 59.643 44.000 21.65 18.87 0.00 2.94
2658 2873 5.590663 TGCTAGTGATGTACAAGTCTAGGAG 59.409 44.000 21.65 9.32 0.00 3.69
2659 2874 5.591067 GCTAGTGATGTACAAGTCTAGGAGT 59.409 44.000 21.65 0.00 0.00 3.85
2660 2875 6.095720 GCTAGTGATGTACAAGTCTAGGAGTT 59.904 42.308 21.65 0.00 0.00 3.01
2661 2876 6.919775 AGTGATGTACAAGTCTAGGAGTTT 57.080 37.500 0.00 0.00 0.00 2.66
2662 2877 6.926313 AGTGATGTACAAGTCTAGGAGTTTC 58.074 40.000 0.00 0.00 0.00 2.78
2663 2878 5.800941 GTGATGTACAAGTCTAGGAGTTTCG 59.199 44.000 0.00 0.00 0.00 3.46
2664 2879 5.708697 TGATGTACAAGTCTAGGAGTTTCGA 59.291 40.000 0.00 0.00 0.00 3.71
2665 2880 5.624344 TGTACAAGTCTAGGAGTTTCGAG 57.376 43.478 0.00 0.00 0.00 4.04
2666 2881 5.068636 TGTACAAGTCTAGGAGTTTCGAGT 58.931 41.667 0.00 0.00 0.00 4.18
2667 2882 6.233434 TGTACAAGTCTAGGAGTTTCGAGTA 58.767 40.000 0.00 0.00 0.00 2.59
2668 2883 6.712095 TGTACAAGTCTAGGAGTTTCGAGTAA 59.288 38.462 0.00 0.00 0.00 2.24
2669 2884 6.645790 ACAAGTCTAGGAGTTTCGAGTAAA 57.354 37.500 0.00 0.00 0.00 2.01
2670 2885 7.229581 ACAAGTCTAGGAGTTTCGAGTAAAT 57.770 36.000 0.00 0.00 0.00 1.40
2671 2886 7.668492 ACAAGTCTAGGAGTTTCGAGTAAATT 58.332 34.615 0.00 0.00 0.00 1.82
2672 2887 8.800332 ACAAGTCTAGGAGTTTCGAGTAAATTA 58.200 33.333 0.00 0.00 0.00 1.40
2673 2888 9.635520 CAAGTCTAGGAGTTTCGAGTAAATTAA 57.364 33.333 0.00 0.00 0.00 1.40
2674 2889 9.857957 AAGTCTAGGAGTTTCGAGTAAATTAAG 57.142 33.333 0.00 0.00 0.00 1.85
2675 2890 9.022884 AGTCTAGGAGTTTCGAGTAAATTAAGT 57.977 33.333 0.00 0.00 0.00 2.24
2676 2891 9.288124 GTCTAGGAGTTTCGAGTAAATTAAGTC 57.712 37.037 0.00 0.00 0.00 3.01
2677 2892 9.017509 TCTAGGAGTTTCGAGTAAATTAAGTCA 57.982 33.333 0.00 0.00 0.00 3.41
2678 2893 9.804758 CTAGGAGTTTCGAGTAAATTAAGTCAT 57.195 33.333 2.11 0.00 0.00 3.06
2680 2895 9.503399 AGGAGTTTCGAGTAAATTAAGTCATTT 57.497 29.630 2.11 0.00 0.00 2.32
2705 2920 6.988622 TTACTTTTATACACCATGGGTTCG 57.011 37.500 18.09 3.87 31.02 3.95
2706 2921 4.913784 ACTTTTATACACCATGGGTTCGT 58.086 39.130 18.09 9.97 31.02 3.85
2707 2922 4.698304 ACTTTTATACACCATGGGTTCGTG 59.302 41.667 18.09 7.26 31.02 4.35
2708 2923 3.985019 TTATACACCATGGGTTCGTGT 57.015 42.857 18.09 13.24 43.01 4.49
2709 2924 2.107950 ATACACCATGGGTTCGTGTG 57.892 50.000 18.09 5.66 40.78 3.82
2710 2925 0.604243 TACACCATGGGTTCGTGTGC 60.604 55.000 18.09 0.00 40.78 4.57
2711 2926 2.282180 ACCATGGGTTCGTGTGCC 60.282 61.111 18.09 0.00 27.29 5.01
2712 2927 2.282110 CCATGGGTTCGTGTGCCA 60.282 61.111 2.85 0.00 0.00 4.92
2713 2928 2.334946 CCATGGGTTCGTGTGCCAG 61.335 63.158 2.85 0.00 0.00 4.85
2714 2929 1.600636 CATGGGTTCGTGTGCCAGT 60.601 57.895 0.00 0.00 0.00 4.00
2715 2930 0.321210 CATGGGTTCGTGTGCCAGTA 60.321 55.000 0.00 0.00 0.00 2.74
2716 2931 0.618458 ATGGGTTCGTGTGCCAGTAT 59.382 50.000 0.00 0.00 0.00 2.12
2717 2932 1.268066 TGGGTTCGTGTGCCAGTATA 58.732 50.000 0.00 0.00 0.00 1.47
2718 2933 1.834896 TGGGTTCGTGTGCCAGTATAT 59.165 47.619 0.00 0.00 0.00 0.86
2719 2934 3.032459 TGGGTTCGTGTGCCAGTATATA 58.968 45.455 0.00 0.00 0.00 0.86
2720 2935 3.644265 TGGGTTCGTGTGCCAGTATATAT 59.356 43.478 0.00 0.00 0.00 0.86
2721 2936 4.833938 TGGGTTCGTGTGCCAGTATATATA 59.166 41.667 0.00 0.00 0.00 0.86
2722 2937 5.482526 TGGGTTCGTGTGCCAGTATATATAT 59.517 40.000 0.00 0.00 0.00 0.86
2723 2938 6.664384 TGGGTTCGTGTGCCAGTATATATATA 59.336 38.462 0.00 0.00 0.00 0.86
2724 2939 7.343574 TGGGTTCGTGTGCCAGTATATATATAT 59.656 37.037 10.10 10.10 0.00 0.86
2725 2940 8.853126 GGGTTCGTGTGCCAGTATATATATATA 58.147 37.037 8.16 8.16 0.00 0.86
2798 3013 8.821686 ATATAGAGAGAGAGAGAGAGAGAGAG 57.178 42.308 0.00 0.00 0.00 3.20
2799 3014 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2800 3015 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2801 3016 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2802 3017 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2803 3018 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2804 3019 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2805 3020 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2806 3021 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2807 3022 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2808 3023 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2809 3024 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2810 3025 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2811 3026 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2812 3027 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2813 3028 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2814 3029 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2815 3030 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2816 3031 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2817 3032 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2818 3033 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2819 3034 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2820 3035 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2821 3036 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2822 3037 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2823 3038 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
2824 3039 4.648762 AGAGAGAGAGAGAGAGAGAGAGTG 59.351 50.000 0.00 0.00 0.00 3.51
2825 3040 4.614475 AGAGAGAGAGAGAGAGAGAGTGA 58.386 47.826 0.00 0.00 0.00 3.41
2826 3041 4.648762 AGAGAGAGAGAGAGAGAGAGTGAG 59.351 50.000 0.00 0.00 0.00 3.51
2827 3042 4.614475 AGAGAGAGAGAGAGAGAGTGAGA 58.386 47.826 0.00 0.00 0.00 3.27
2828 3043 4.648762 AGAGAGAGAGAGAGAGAGTGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
2829 3044 4.614475 AGAGAGAGAGAGAGAGTGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
2830 3045 5.215069 AGAGAGAGAGAGAGAGTGAGAGAT 58.785 45.833 0.00 0.00 0.00 2.75
2831 3046 5.664908 AGAGAGAGAGAGAGAGTGAGAGATT 59.335 44.000 0.00 0.00 0.00 2.40
2832 3047 5.678583 AGAGAGAGAGAGAGTGAGAGATTG 58.321 45.833 0.00 0.00 0.00 2.67
2833 3048 5.426509 AGAGAGAGAGAGAGTGAGAGATTGA 59.573 44.000 0.00 0.00 0.00 2.57
2834 3049 6.100859 AGAGAGAGAGAGAGTGAGAGATTGAT 59.899 42.308 0.00 0.00 0.00 2.57
2835 3050 6.666678 AGAGAGAGAGAGTGAGAGATTGATT 58.333 40.000 0.00 0.00 0.00 2.57
2836 3051 7.121382 AGAGAGAGAGAGTGAGAGATTGATTT 58.879 38.462 0.00 0.00 0.00 2.17
2837 3052 7.616935 AGAGAGAGAGAGTGAGAGATTGATTTT 59.383 37.037 0.00 0.00 0.00 1.82
2838 3053 8.821686 AGAGAGAGAGTGAGAGATTGATTTTA 57.178 34.615 0.00 0.00 0.00 1.52
2839 3054 9.425248 AGAGAGAGAGTGAGAGATTGATTTTAT 57.575 33.333 0.00 0.00 0.00 1.40
2846 3061 9.883142 GAGTGAGAGATTGATTTTATATAGGGG 57.117 37.037 0.00 0.00 0.00 4.79
2847 3062 9.398921 AGTGAGAGATTGATTTTATATAGGGGT 57.601 33.333 0.00 0.00 0.00 4.95
2848 3063 9.442047 GTGAGAGATTGATTTTATATAGGGGTG 57.558 37.037 0.00 0.00 0.00 4.61
2849 3064 8.605947 TGAGAGATTGATTTTATATAGGGGTGG 58.394 37.037 0.00 0.00 0.00 4.61
2850 3065 7.406104 AGAGATTGATTTTATATAGGGGTGGC 58.594 38.462 0.00 0.00 0.00 5.01
2851 3066 7.240616 AGAGATTGATTTTATATAGGGGTGGCT 59.759 37.037 0.00 0.00 0.00 4.75
2852 3067 7.177878 AGATTGATTTTATATAGGGGTGGCTG 58.822 38.462 0.00 0.00 0.00 4.85
2853 3068 5.922960 TGATTTTATATAGGGGTGGCTGT 57.077 39.130 0.00 0.00 0.00 4.40
2854 3069 5.876357 TGATTTTATATAGGGGTGGCTGTC 58.124 41.667 0.00 0.00 0.00 3.51
2855 3070 4.345859 TTTTATATAGGGGTGGCTGTCG 57.654 45.455 0.00 0.00 0.00 4.35
2856 3071 1.933021 TATATAGGGGTGGCTGTCGG 58.067 55.000 0.00 0.00 0.00 4.79
2857 3072 0.105142 ATATAGGGGTGGCTGTCGGT 60.105 55.000 0.00 0.00 0.00 4.69
2858 3073 1.046472 TATAGGGGTGGCTGTCGGTG 61.046 60.000 0.00 0.00 0.00 4.94
2859 3074 3.717416 TATAGGGGTGGCTGTCGGTGT 62.717 57.143 0.00 0.00 0.00 4.16
2860 3075 4.699522 GGGGTGGCTGTCGGTGTC 62.700 72.222 0.00 0.00 0.00 3.67
2861 3076 3.936203 GGGTGGCTGTCGGTGTCA 61.936 66.667 0.00 0.00 0.00 3.58
2862 3077 2.110213 GGTGGCTGTCGGTGTCAA 59.890 61.111 0.00 0.00 0.00 3.18
2863 3078 1.525077 GGTGGCTGTCGGTGTCAAA 60.525 57.895 0.00 0.00 0.00 2.69
2864 3079 1.098712 GGTGGCTGTCGGTGTCAAAA 61.099 55.000 0.00 0.00 0.00 2.44
2865 3080 0.028902 GTGGCTGTCGGTGTCAAAAC 59.971 55.000 0.00 0.00 0.00 2.43
2866 3081 1.098712 TGGCTGTCGGTGTCAAAACC 61.099 55.000 0.00 0.00 36.82 3.27
2872 3087 4.150994 GGTGTCAAAACCGGCAGA 57.849 55.556 0.00 0.00 0.00 4.26
2873 3088 2.641197 GGTGTCAAAACCGGCAGAT 58.359 52.632 0.00 0.00 0.00 2.90
2874 3089 0.521735 GGTGTCAAAACCGGCAGATC 59.478 55.000 0.00 0.00 0.00 2.75
2875 3090 1.523758 GTGTCAAAACCGGCAGATCT 58.476 50.000 0.00 0.00 0.00 2.75
2876 3091 1.464997 GTGTCAAAACCGGCAGATCTC 59.535 52.381 0.00 0.00 0.00 2.75
2877 3092 0.721718 GTCAAAACCGGCAGATCTCG 59.278 55.000 0.00 0.00 0.00 4.04
2881 3096 0.974010 AAACCGGCAGATCTCGGGTA 60.974 55.000 22.66 0.00 46.82 3.69
2882 3097 1.392710 AACCGGCAGATCTCGGGTAG 61.393 60.000 22.66 0.00 45.54 3.18
2883 3098 2.565645 CCGGCAGATCTCGGGTAGG 61.566 68.421 13.71 0.00 42.32 3.18
2884 3099 2.565645 CGGCAGATCTCGGGTAGGG 61.566 68.421 0.00 0.00 0.00 3.53
2885 3100 2.210711 GGCAGATCTCGGGTAGGGG 61.211 68.421 0.00 0.00 0.00 4.79
2886 3101 2.210711 GCAGATCTCGGGTAGGGGG 61.211 68.421 0.00 0.00 0.00 5.40
2887 3102 1.233369 CAGATCTCGGGTAGGGGGT 59.767 63.158 0.00 0.00 0.00 4.95
2888 3103 0.828343 CAGATCTCGGGTAGGGGGTC 60.828 65.000 0.00 0.00 0.00 4.46
2889 3104 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
2890 3105 2.019272 ATCTCGGGTAGGGGGTCCT 61.019 63.158 0.00 0.00 46.96 3.85
2891 3106 2.313749 ATCTCGGGTAGGGGGTCCTG 62.314 65.000 0.00 0.00 44.61 3.86
2892 3107 2.948354 TCGGGTAGGGGGTCCTGA 60.948 66.667 0.00 0.00 44.61 3.86
2893 3108 2.039951 CGGGTAGGGGGTCCTGAA 59.960 66.667 0.00 0.00 44.61 3.02
2894 3109 2.364780 CGGGTAGGGGGTCCTGAAC 61.365 68.421 0.00 0.00 44.61 3.18
2895 3110 1.082392 GGGTAGGGGGTCCTGAACT 59.918 63.158 0.00 0.00 44.61 3.01
2896 3111 1.272554 GGGTAGGGGGTCCTGAACTG 61.273 65.000 0.00 0.00 44.61 3.16
2897 3112 0.546988 GGTAGGGGGTCCTGAACTGT 60.547 60.000 0.00 0.00 44.61 3.55
2898 3113 0.613777 GTAGGGGGTCCTGAACTGTG 59.386 60.000 0.00 0.00 44.61 3.66
2899 3114 1.198759 TAGGGGGTCCTGAACTGTGC 61.199 60.000 0.00 0.00 44.61 4.57
2900 3115 2.829384 GGGGGTCCTGAACTGTGCA 61.829 63.158 0.00 0.00 0.00 4.57
2901 3116 1.380302 GGGGTCCTGAACTGTGCAT 59.620 57.895 0.00 0.00 0.00 3.96
2902 3117 0.678048 GGGGTCCTGAACTGTGCATC 60.678 60.000 0.00 0.00 0.00 3.91
2903 3118 0.326264 GGGTCCTGAACTGTGCATCT 59.674 55.000 0.00 0.00 0.00 2.90
2904 3119 1.555075 GGGTCCTGAACTGTGCATCTA 59.445 52.381 0.00 0.00 0.00 1.98
2905 3120 2.027192 GGGTCCTGAACTGTGCATCTAA 60.027 50.000 0.00 0.00 0.00 2.10
2906 3121 3.559171 GGGTCCTGAACTGTGCATCTAAA 60.559 47.826 0.00 0.00 0.00 1.85
2907 3122 4.072131 GGTCCTGAACTGTGCATCTAAAA 58.928 43.478 0.00 0.00 0.00 1.52
2908 3123 4.702131 GGTCCTGAACTGTGCATCTAAAAT 59.298 41.667 0.00 0.00 0.00 1.82
2909 3124 5.163713 GGTCCTGAACTGTGCATCTAAAATC 60.164 44.000 0.00 0.00 0.00 2.17
2910 3125 4.631377 TCCTGAACTGTGCATCTAAAATCG 59.369 41.667 0.00 0.00 0.00 3.34
2911 3126 4.631377 CCTGAACTGTGCATCTAAAATCGA 59.369 41.667 0.00 0.00 0.00 3.59
2912 3127 5.295292 CCTGAACTGTGCATCTAAAATCGAT 59.705 40.000 0.00 0.00 0.00 3.59
2913 3128 6.110543 TGAACTGTGCATCTAAAATCGATG 57.889 37.500 0.00 0.00 40.87 3.84
2914 3129 5.065090 TGAACTGTGCATCTAAAATCGATGG 59.935 40.000 0.00 0.00 38.88 3.51
2915 3130 4.517285 ACTGTGCATCTAAAATCGATGGT 58.483 39.130 0.00 0.00 38.88 3.55
2916 3131 5.670485 ACTGTGCATCTAAAATCGATGGTA 58.330 37.500 0.00 0.00 38.88 3.25
2917 3132 6.112734 ACTGTGCATCTAAAATCGATGGTAA 58.887 36.000 0.00 0.00 38.88 2.85
2918 3133 6.037172 ACTGTGCATCTAAAATCGATGGTAAC 59.963 38.462 0.00 0.00 38.88 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 4.113815 TTGCTCCATCCCCAGCCG 62.114 66.667 0.00 0.00 34.47 5.52
91 93 2.440980 GTTGCTCCATCCCCAGCC 60.441 66.667 0.00 0.00 34.47 4.85
109 111 3.618855 TAGCCGCCAGTCCCTCCTT 62.619 63.158 0.00 0.00 0.00 3.36
110 112 4.075793 TAGCCGCCAGTCCCTCCT 62.076 66.667 0.00 0.00 0.00 3.69
131 133 3.489513 GCACTAAGGGCCCCCGAT 61.490 66.667 21.43 5.01 41.95 4.18
142 144 4.041762 CCCCTTGGGCGGCACTAA 62.042 66.667 12.47 1.61 35.35 2.24
159 161 4.593864 GTCCCCTCGCATCGCCTC 62.594 72.222 0.00 0.00 0.00 4.70
184 186 8.239314 TCAAGAAAAACATCAACATCATAGCTC 58.761 33.333 0.00 0.00 0.00 4.09
208 210 7.883217 TGCGTTAATAAAAACACCCTTTATCA 58.117 30.769 0.00 0.00 30.41 2.15
209 211 8.641155 GTTGCGTTAATAAAAACACCCTTTATC 58.359 33.333 0.00 0.00 30.41 1.75
215 217 5.749588 ACTTGTTGCGTTAATAAAAACACCC 59.250 36.000 0.00 0.00 30.89 4.61
218 220 7.194278 TGCTACTTGTTGCGTTAATAAAAACA 58.806 30.769 3.18 0.00 0.00 2.83
221 223 7.585867 TGATGCTACTTGTTGCGTTAATAAAA 58.414 30.769 3.74 0.00 0.00 1.52
248 250 3.362237 CGCTCAATTCGATTCGTATCCTC 59.638 47.826 5.89 0.00 0.00 3.71
278 280 1.000283 GCATCCTAGCTACGCACAGAT 60.000 52.381 0.00 0.00 0.00 2.90
282 284 2.288213 TGTATGCATCCTAGCTACGCAC 60.288 50.000 0.19 0.00 35.02 5.34
290 292 2.158914 TGGCTGTGTGTATGCATCCTAG 60.159 50.000 0.19 0.00 0.00 3.02
291 293 1.836802 TGGCTGTGTGTATGCATCCTA 59.163 47.619 0.19 0.00 0.00 2.94
337 339 7.933033 ACTGGTGCTGATTTGTCATTTTATTTT 59.067 29.630 0.00 0.00 0.00 1.82
346 348 4.713553 TCTTTACTGGTGCTGATTTGTCA 58.286 39.130 0.00 0.00 0.00 3.58
352 354 8.579850 TTATTTTCATCTTTACTGGTGCTGAT 57.420 30.769 0.00 0.00 0.00 2.90
581 585 5.506649 GGCTGTGGTTTCGTTTCATTTTCTA 60.507 40.000 0.00 0.00 0.00 2.10
594 598 2.298729 TGCAATTAAGGGCTGTGGTTTC 59.701 45.455 3.22 0.00 0.00 2.78
654 659 3.713764 AGAGAGAGAGAGAGAGGAAGAGG 59.286 52.174 0.00 0.00 0.00 3.69
655 660 4.653341 AGAGAGAGAGAGAGAGAGGAAGAG 59.347 50.000 0.00 0.00 0.00 2.85
656 661 4.624913 AGAGAGAGAGAGAGAGAGGAAGA 58.375 47.826 0.00 0.00 0.00 2.87
657 662 4.653341 AGAGAGAGAGAGAGAGAGAGGAAG 59.347 50.000 0.00 0.00 0.00 3.46
658 663 4.624913 AGAGAGAGAGAGAGAGAGAGGAA 58.375 47.826 0.00 0.00 0.00 3.36
659 664 4.078922 AGAGAGAGAGAGAGAGAGAGAGGA 60.079 50.000 0.00 0.00 0.00 3.71
660 665 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
661 666 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
662 667 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
663 668 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
664 669 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
665 670 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
666 671 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
667 672 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
668 673 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
669 674 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
670 675 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
671 676 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
672 677 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
673 678 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
674 679 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
675 680 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
676 681 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
677 682 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
678 683 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
679 684 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
680 685 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
681 686 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
682 687 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
683 688 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
684 689 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
685 690 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
686 691 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
687 692 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
688 693 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
689 694 5.599732 CAAGAGAGAGAGAGAGAGAGAGAG 58.400 50.000 0.00 0.00 0.00 3.20
696 701 2.355197 CACGCAAGAGAGAGAGAGAGA 58.645 52.381 0.00 0.00 43.62 3.10
711 716 2.583441 CCAAGGACTCTCCCACGCA 61.583 63.158 0.00 0.00 37.19 5.24
715 720 0.343372 ATAGCCCAAGGACTCTCCCA 59.657 55.000 0.00 0.00 37.19 4.37
742 758 2.283529 GGAGACGAGGTGGCCTTCA 61.284 63.158 3.32 0.00 31.76 3.02
762 782 1.693103 GGGGTAGGGTTGGAGAGGG 60.693 68.421 0.00 0.00 0.00 4.30
777 802 1.099879 CGTGAGGTAGAGTACGGGGG 61.100 65.000 0.00 0.00 33.27 5.40
869 900 1.658717 GATGCTCGCAGCGTACGAT 60.659 57.895 21.65 10.81 46.26 3.73
879 910 2.996621 GGGTGAATATGTAGATGCTCGC 59.003 50.000 0.00 0.00 0.00 5.03
895 926 1.916777 GGAGAAAGGTCCGGGGTGA 60.917 63.158 0.00 0.00 0.00 4.02
916 964 0.954449 TGGAGTGAGACGGTCGAGAC 60.954 60.000 1.89 1.16 0.00 3.36
917 965 0.035343 ATGGAGTGAGACGGTCGAGA 60.035 55.000 1.89 0.00 0.00 4.04
918 966 0.378962 GATGGAGTGAGACGGTCGAG 59.621 60.000 1.89 0.00 0.00 4.04
919 967 0.035343 AGATGGAGTGAGACGGTCGA 60.035 55.000 1.89 0.00 0.00 4.20
920 968 0.378962 GAGATGGAGTGAGACGGTCG 59.621 60.000 1.89 0.00 0.00 4.79
921 969 0.741915 GGAGATGGAGTGAGACGGTC 59.258 60.000 0.00 0.00 0.00 4.79
922 970 1.032657 CGGAGATGGAGTGAGACGGT 61.033 60.000 0.00 0.00 0.00 4.83
933 981 1.447643 GTGGATGGGACGGAGATGG 59.552 63.158 0.00 0.00 0.00 3.51
936 984 1.685765 CAGGTGGATGGGACGGAGA 60.686 63.158 0.00 0.00 0.00 3.71
937 985 2.903357 CAGGTGGATGGGACGGAG 59.097 66.667 0.00 0.00 0.00 4.63
938 986 3.399181 GCAGGTGGATGGGACGGA 61.399 66.667 0.00 0.00 0.00 4.69
939 987 3.687321 CTGCAGGTGGATGGGACGG 62.687 68.421 5.57 0.00 0.00 4.79
940 988 2.124983 CTGCAGGTGGATGGGACG 60.125 66.667 5.57 0.00 0.00 4.79
941 989 1.626356 TAGCTGCAGGTGGATGGGAC 61.626 60.000 28.10 0.29 0.00 4.46
994 1046 4.161295 CGGCGGCTCCATGGAAGA 62.161 66.667 17.00 0.00 34.01 2.87
1039 1097 2.178521 GCACATGCAGCAGACAGC 59.821 61.111 0.00 0.00 46.19 4.40
1040 1098 2.479198 CGCACATGCAGCAGACAG 59.521 61.111 0.00 0.00 42.21 3.51
1170 1240 4.101448 ACGCCCAGGTCAGATGGC 62.101 66.667 0.00 0.00 40.54 4.40
1203 1273 3.913548 ACAGATCGCTGCAGTATCTAG 57.086 47.619 24.42 20.82 46.26 2.43
1303 1373 1.450312 CTTCTTGCTAGCCACCGGG 60.450 63.158 13.29 0.00 37.18 5.73
1327 1403 1.133025 GATGCCACCATCTTCCGTTTG 59.867 52.381 0.00 0.00 43.62 2.93
1582 1658 2.358737 CCGCTGTTCCCTTTCGCT 60.359 61.111 0.00 0.00 0.00 4.93
1657 1736 4.394712 CCGCTGTTCCCCTTCGCT 62.395 66.667 0.00 0.00 0.00 4.93
1873 2030 1.903183 AGCTTGTACCTCCTCACCTTC 59.097 52.381 0.00 0.00 0.00 3.46
1920 2077 2.684881 CCCTTTTGATTCCGTGATCCTG 59.315 50.000 0.00 0.00 0.00 3.86
1958 2115 3.924114 TGTTGGCTAGCTATTTGGCTA 57.076 42.857 15.72 0.00 42.97 3.93
1976 2133 3.191162 CACCAAATCACCAATGTCGATGT 59.809 43.478 0.00 0.00 0.00 3.06
1978 2135 3.420893 ACACCAAATCACCAATGTCGAT 58.579 40.909 0.00 0.00 0.00 3.59
1986 2143 2.559698 ACATCGACACCAAATCACCA 57.440 45.000 0.00 0.00 0.00 4.17
1987 2144 3.938963 ACATACATCGACACCAAATCACC 59.061 43.478 0.00 0.00 0.00 4.02
1988 2145 5.579119 TGTACATACATCGACACCAAATCAC 59.421 40.000 0.00 0.00 0.00 3.06
1989 2146 5.725362 TGTACATACATCGACACCAAATCA 58.275 37.500 0.00 0.00 0.00 2.57
1990 2147 6.844696 ATGTACATACATCGACACCAAATC 57.155 37.500 6.56 0.00 42.96 2.17
2011 2168 0.300491 CACGACGGGCAAACGATATG 59.700 55.000 0.00 0.00 37.61 1.78
2075 2232 4.503370 GGTTTAAGATCTGTACAGCGCTAC 59.497 45.833 18.45 6.46 0.00 3.58
2079 2236 3.508762 ACGGTTTAAGATCTGTACAGCG 58.491 45.455 18.45 13.97 0.00 5.18
2096 2253 7.651027 ACTGGTATATACTAAAACTGACGGT 57.349 36.000 12.54 1.52 0.00 4.83
2109 2266 6.675026 TCTATGCACGTCAACTGGTATATAC 58.325 40.000 4.14 4.14 0.00 1.47
2110 2267 6.072119 CCTCTATGCACGTCAACTGGTATATA 60.072 42.308 0.00 0.00 0.00 0.86
2111 2268 5.279006 CCTCTATGCACGTCAACTGGTATAT 60.279 44.000 0.00 0.00 0.00 0.86
2175 2332 3.387091 ATACCACCGCACGGAGCA 61.387 61.111 17.40 0.00 46.13 4.26
2176 2333 2.890474 CATACCACCGCACGGAGC 60.890 66.667 17.40 0.00 38.96 4.70
2177 2334 1.079405 AACATACCACCGCACGGAG 60.079 57.895 17.40 7.94 38.96 4.63
2178 2335 1.374885 CAACATACCACCGCACGGA 60.375 57.895 17.40 0.00 38.96 4.69
2180 2337 2.395360 CCCAACATACCACCGCACG 61.395 63.158 0.00 0.00 0.00 5.34
2182 2339 2.353189 CCCCAACATACCACCGCA 59.647 61.111 0.00 0.00 0.00 5.69
2212 2427 3.657634 GTTGCACTGACTCATCTCTTGA 58.342 45.455 0.00 0.00 0.00 3.02
2213 2428 2.411069 CGTTGCACTGACTCATCTCTTG 59.589 50.000 0.00 0.00 0.00 3.02
2214 2429 2.611473 CCGTTGCACTGACTCATCTCTT 60.611 50.000 0.00 0.00 0.00 2.85
2234 2449 3.499737 CGTTCGCAGACCATGGCC 61.500 66.667 13.04 0.00 34.32 5.36
2236 2451 0.390603 TAACCGTTCGCAGACCATGG 60.391 55.000 11.19 11.19 34.32 3.66
2246 2461 0.854062 TTGCGAAGTGTAACCGTTCG 59.146 50.000 0.00 0.00 44.63 3.95
2267 2482 2.573009 GGCCTAACCACCTACAACCTAA 59.427 50.000 0.00 0.00 38.86 2.69
2271 2486 0.322648 ACGGCCTAACCACCTACAAC 59.677 55.000 0.00 0.00 39.03 3.32
2277 2492 2.746277 CTGCACGGCCTAACCACC 60.746 66.667 0.00 0.00 39.03 4.61
2288 2503 2.480037 TCTCAAGTTACAATGCTGCACG 59.520 45.455 3.57 1.25 0.00 5.34
2293 2508 4.993584 CACTCACTCTCAAGTTACAATGCT 59.006 41.667 0.00 0.00 31.71 3.79
2294 2509 4.153117 CCACTCACTCTCAAGTTACAATGC 59.847 45.833 0.00 0.00 31.71 3.56
2297 2512 4.442893 CCACCACTCACTCTCAAGTTACAA 60.443 45.833 0.00 0.00 31.71 2.41
2298 2513 3.069586 CCACCACTCACTCTCAAGTTACA 59.930 47.826 0.00 0.00 31.71 2.41
2329 2544 4.410400 CCTTCGAGGGCCACCACC 62.410 72.222 6.18 0.00 40.13 4.61
2330 2545 1.833787 TAACCTTCGAGGGCCACCAC 61.834 60.000 14.47 0.00 40.58 4.16
2331 2546 1.536907 TAACCTTCGAGGGCCACCA 60.537 57.895 14.47 0.00 40.58 4.17
2334 2549 1.229400 ACCTAACCTTCGAGGGCCA 60.229 57.895 14.47 0.09 40.58 5.36
2341 2556 2.734492 CGGCTTACTGACCTAACCTTCG 60.734 54.545 0.00 0.00 0.00 3.79
2342 2557 2.418334 CCGGCTTACTGACCTAACCTTC 60.418 54.545 0.00 0.00 0.00 3.46
2348 2563 1.822990 CTTGACCGGCTTACTGACCTA 59.177 52.381 0.00 0.00 0.00 3.08
2354 2569 1.597461 GCTCCTTGACCGGCTTACT 59.403 57.895 0.00 0.00 0.00 2.24
2357 2572 4.035102 GGGCTCCTTGACCGGCTT 62.035 66.667 0.00 0.00 31.76 4.35
2362 2577 1.002011 GACCTTGGGCTCCTTGACC 60.002 63.158 0.00 0.00 46.75 4.02
2369 2584 1.874345 TTCTCGTCGACCTTGGGCTC 61.874 60.000 10.58 0.00 0.00 4.70
2372 2587 1.446272 GCTTCTCGTCGACCTTGGG 60.446 63.158 10.58 0.00 0.00 4.12
2401 2616 1.305802 TACCATCCCCAGCGACAGT 60.306 57.895 0.00 0.00 0.00 3.55
2418 2633 1.874739 CGTTGTTGTTCCCCTTCGCTA 60.875 52.381 0.00 0.00 0.00 4.26
2433 2648 1.645034 CATCGGCTTCTCATCGTTGT 58.355 50.000 0.00 0.00 0.00 3.32
2440 2655 2.124983 GCCTGCATCGGCTTCTCA 60.125 61.111 9.66 0.00 46.63 3.27
2446 2661 2.817423 CTTTCTCGCCTGCATCGGC 61.817 63.158 6.91 6.91 46.68 5.54
2447 2662 1.021390 AACTTTCTCGCCTGCATCGG 61.021 55.000 8.36 0.00 0.00 4.18
2448 2663 0.095935 CAACTTTCTCGCCTGCATCG 59.904 55.000 2.49 2.49 0.00 3.84
2449 2664 0.449388 CCAACTTTCTCGCCTGCATC 59.551 55.000 0.00 0.00 0.00 3.91
2450 2665 1.589716 GCCAACTTTCTCGCCTGCAT 61.590 55.000 0.00 0.00 0.00 3.96
2451 2666 2.260869 GCCAACTTTCTCGCCTGCA 61.261 57.895 0.00 0.00 0.00 4.41
2452 2667 2.563427 GCCAACTTTCTCGCCTGC 59.437 61.111 0.00 0.00 0.00 4.85
2453 2668 2.863153 CGCCAACTTTCTCGCCTG 59.137 61.111 0.00 0.00 0.00 4.85
2454 2669 3.050275 GCGCCAACTTTCTCGCCT 61.050 61.111 0.00 0.00 41.53 5.52
2455 2670 4.445545 CGCGCCAACTTTCTCGCC 62.446 66.667 0.00 0.00 44.12 5.54
2456 2671 4.445545 CCGCGCCAACTTTCTCGC 62.446 66.667 0.00 0.00 43.62 5.03
2457 2672 4.445545 GCCGCGCCAACTTTCTCG 62.446 66.667 0.00 0.00 0.00 4.04
2458 2673 3.050275 AGCCGCGCCAACTTTCTC 61.050 61.111 0.00 0.00 0.00 2.87
2459 2674 3.357079 CAGCCGCGCCAACTTTCT 61.357 61.111 0.00 0.00 0.00 2.52
2460 2675 4.404654 CCAGCCGCGCCAACTTTC 62.405 66.667 0.00 0.00 0.00 2.62
2470 2685 3.682292 CTTGACCCTACCCAGCCGC 62.682 68.421 0.00 0.00 0.00 6.53
2471 2686 2.584608 CTTGACCCTACCCAGCCG 59.415 66.667 0.00 0.00 0.00 5.52
2472 2687 1.923909 ACCTTGACCCTACCCAGCC 60.924 63.158 0.00 0.00 0.00 4.85
2473 2688 1.198759 TCACCTTGACCCTACCCAGC 61.199 60.000 0.00 0.00 0.00 4.85
2474 2689 0.905357 CTCACCTTGACCCTACCCAG 59.095 60.000 0.00 0.00 0.00 4.45
2475 2690 0.546747 CCTCACCTTGACCCTACCCA 60.547 60.000 0.00 0.00 0.00 4.51
2476 2691 0.252558 TCCTCACCTTGACCCTACCC 60.253 60.000 0.00 0.00 0.00 3.69
2477 2692 1.196012 CTCCTCACCTTGACCCTACC 58.804 60.000 0.00 0.00 0.00 3.18
2478 2693 1.196012 CCTCCTCACCTTGACCCTAC 58.804 60.000 0.00 0.00 0.00 3.18
2479 2694 0.790993 ACCTCCTCACCTTGACCCTA 59.209 55.000 0.00 0.00 0.00 3.53
2480 2695 0.838122 CACCTCCTCACCTTGACCCT 60.838 60.000 0.00 0.00 0.00 4.34
2481 2696 1.679898 CACCTCCTCACCTTGACCC 59.320 63.158 0.00 0.00 0.00 4.46
2482 2697 1.003233 GCACCTCCTCACCTTGACC 60.003 63.158 0.00 0.00 0.00 4.02
2483 2698 0.108585 TTGCACCTCCTCACCTTGAC 59.891 55.000 0.00 0.00 0.00 3.18
2484 2699 0.843309 TTTGCACCTCCTCACCTTGA 59.157 50.000 0.00 0.00 0.00 3.02
2485 2700 0.954452 GTTTGCACCTCCTCACCTTG 59.046 55.000 0.00 0.00 0.00 3.61
2486 2701 0.846693 AGTTTGCACCTCCTCACCTT 59.153 50.000 0.00 0.00 0.00 3.50
2487 2702 0.398318 GAGTTTGCACCTCCTCACCT 59.602 55.000 1.80 0.00 0.00 4.00
2488 2703 0.606673 GGAGTTTGCACCTCCTCACC 60.607 60.000 19.84 0.00 44.29 4.02
2489 2704 2.934083 GGAGTTTGCACCTCCTCAC 58.066 57.895 19.84 0.00 44.29 3.51
2494 2709 1.228245 TGCCAGGAGTTTGCACCTC 60.228 57.895 4.33 4.33 33.29 3.85
2495 2710 1.228367 CTGCCAGGAGTTTGCACCT 60.228 57.895 0.00 0.00 36.07 4.00
2496 2711 2.270986 CCTGCCAGGAGTTTGCACC 61.271 63.158 4.15 0.00 37.67 5.01
2497 2712 1.529244 ACCTGCCAGGAGTTTGCAC 60.529 57.895 19.90 0.00 37.67 4.57
2498 2713 1.529010 CACCTGCCAGGAGTTTGCA 60.529 57.895 19.90 0.00 37.67 4.08
2499 2714 1.529244 ACACCTGCCAGGAGTTTGC 60.529 57.895 19.90 0.00 35.61 3.68
2500 2715 0.179020 TCACACCTGCCAGGAGTTTG 60.179 55.000 19.90 7.71 37.06 2.93
2501 2716 0.109342 CTCACACCTGCCAGGAGTTT 59.891 55.000 19.90 0.00 37.06 2.66
2502 2717 0.764369 TCTCACACCTGCCAGGAGTT 60.764 55.000 19.90 0.00 37.06 3.01
2503 2718 0.764369 TTCTCACACCTGCCAGGAGT 60.764 55.000 19.90 13.73 39.87 3.85
2504 2719 0.617413 ATTCTCACACCTGCCAGGAG 59.383 55.000 19.90 12.92 37.67 3.69
2505 2720 1.951209 TATTCTCACACCTGCCAGGA 58.049 50.000 19.90 0.00 37.67 3.86
2506 2721 2.787473 TTATTCTCACACCTGCCAGG 57.213 50.000 9.83 9.83 42.49 4.45
2507 2722 3.441572 CCTTTTATTCTCACACCTGCCAG 59.558 47.826 0.00 0.00 0.00 4.85
2508 2723 3.420893 CCTTTTATTCTCACACCTGCCA 58.579 45.455 0.00 0.00 0.00 4.92
2509 2724 2.755103 CCCTTTTATTCTCACACCTGCC 59.245 50.000 0.00 0.00 0.00 4.85
2510 2725 3.421844 ACCCTTTTATTCTCACACCTGC 58.578 45.455 0.00 0.00 0.00 4.85
2511 2726 5.123979 GCTTACCCTTTTATTCTCACACCTG 59.876 44.000 0.00 0.00 0.00 4.00
2512 2727 5.222048 TGCTTACCCTTTTATTCTCACACCT 60.222 40.000 0.00 0.00 0.00 4.00
2513 2728 5.007682 TGCTTACCCTTTTATTCTCACACC 58.992 41.667 0.00 0.00 0.00 4.16
2514 2729 5.392057 GCTGCTTACCCTTTTATTCTCACAC 60.392 44.000 0.00 0.00 0.00 3.82
2515 2730 4.700213 GCTGCTTACCCTTTTATTCTCACA 59.300 41.667 0.00 0.00 0.00 3.58
2516 2731 4.944317 AGCTGCTTACCCTTTTATTCTCAC 59.056 41.667 0.00 0.00 0.00 3.51
2517 2732 5.179452 AGCTGCTTACCCTTTTATTCTCA 57.821 39.130 0.00 0.00 0.00 3.27
2518 2733 5.237561 GCTAGCTGCTTACCCTTTTATTCTC 59.762 44.000 7.79 0.00 38.95 2.87
2519 2734 5.126779 GCTAGCTGCTTACCCTTTTATTCT 58.873 41.667 7.79 0.00 38.95 2.40
2520 2735 4.276183 GGCTAGCTGCTTACCCTTTTATTC 59.724 45.833 15.72 0.00 42.39 1.75
2521 2736 4.207955 GGCTAGCTGCTTACCCTTTTATT 58.792 43.478 15.72 0.00 42.39 1.40
2522 2737 3.202151 TGGCTAGCTGCTTACCCTTTTAT 59.798 43.478 15.72 0.00 42.39 1.40
2523 2738 2.574369 TGGCTAGCTGCTTACCCTTTTA 59.426 45.455 15.72 0.00 42.39 1.52
2524 2739 1.354368 TGGCTAGCTGCTTACCCTTTT 59.646 47.619 15.72 0.00 42.39 2.27
2525 2740 0.991920 TGGCTAGCTGCTTACCCTTT 59.008 50.000 15.72 0.00 42.39 3.11
2526 2741 0.253327 GTGGCTAGCTGCTTACCCTT 59.747 55.000 15.72 0.00 42.39 3.95
2527 2742 1.627297 GGTGGCTAGCTGCTTACCCT 61.627 60.000 15.72 0.00 40.43 4.34
2528 2743 1.153147 GGTGGCTAGCTGCTTACCC 60.153 63.158 15.72 6.72 40.43 3.69
2529 2744 0.181350 ATGGTGGCTAGCTGCTTACC 59.819 55.000 15.72 10.64 43.76 2.85
2530 2745 1.587547 GATGGTGGCTAGCTGCTTAC 58.412 55.000 15.72 0.00 42.39 2.34
2531 2746 0.104855 CGATGGTGGCTAGCTGCTTA 59.895 55.000 15.72 0.00 42.39 3.09
2532 2747 1.153289 CGATGGTGGCTAGCTGCTT 60.153 57.895 15.72 0.00 42.39 3.91
2533 2748 2.060383 TCGATGGTGGCTAGCTGCT 61.060 57.895 15.72 7.57 42.39 4.24
2534 2749 1.884926 GTCGATGGTGGCTAGCTGC 60.885 63.158 15.72 7.58 41.94 5.25
2535 2750 0.529337 CTGTCGATGGTGGCTAGCTG 60.529 60.000 15.72 0.00 0.00 4.24
2536 2751 0.684479 TCTGTCGATGGTGGCTAGCT 60.684 55.000 15.72 0.00 0.00 3.32
2537 2752 0.390860 ATCTGTCGATGGTGGCTAGC 59.609 55.000 6.04 6.04 0.00 3.42
2538 2753 2.145958 CATCTGTCGATGGTGGCTAG 57.854 55.000 0.00 0.00 42.66 3.42
2569 2784 9.556030 CATGTATATGACGAGTAAACGATGTAT 57.444 33.333 0.00 0.00 36.36 2.29
2570 2785 8.562052 ACATGTATATGACGAGTAAACGATGTA 58.438 33.333 6.45 0.00 37.73 2.29
2571 2786 7.423199 ACATGTATATGACGAGTAAACGATGT 58.577 34.615 6.45 0.00 37.73 3.06
2572 2787 7.853377 ACATGTATATGACGAGTAAACGATG 57.147 36.000 6.45 0.00 37.73 3.84
2573 2788 8.867112 AAACATGTATATGACGAGTAAACGAT 57.133 30.769 6.45 0.00 37.73 3.73
2574 2789 8.692110 AAAACATGTATATGACGAGTAAACGA 57.308 30.769 6.45 0.00 37.73 3.85
2575 2790 9.405083 GAAAAACATGTATATGACGAGTAAACG 57.595 33.333 6.45 0.00 37.73 3.60
2576 2791 9.698617 GGAAAAACATGTATATGACGAGTAAAC 57.301 33.333 6.45 0.00 37.73 2.01
2577 2792 9.661563 AGGAAAAACATGTATATGACGAGTAAA 57.338 29.630 6.45 0.00 37.73 2.01
2578 2793 9.309516 GAGGAAAAACATGTATATGACGAGTAA 57.690 33.333 6.45 0.00 37.73 2.24
2579 2794 7.924412 GGAGGAAAAACATGTATATGACGAGTA 59.076 37.037 6.45 0.00 37.73 2.59
2580 2795 6.761714 GGAGGAAAAACATGTATATGACGAGT 59.238 38.462 6.45 0.00 37.73 4.18
2581 2796 6.986817 AGGAGGAAAAACATGTATATGACGAG 59.013 38.462 6.45 0.00 37.73 4.18
2582 2797 6.884832 AGGAGGAAAAACATGTATATGACGA 58.115 36.000 6.45 0.00 37.73 4.20
2583 2798 7.553881 AAGGAGGAAAAACATGTATATGACG 57.446 36.000 6.45 0.00 37.73 4.35
2586 2801 9.927668 ACAAAAAGGAGGAAAAACATGTATATG 57.072 29.630 0.00 0.00 40.24 1.78
2589 2804 9.679661 AAAACAAAAAGGAGGAAAAACATGTAT 57.320 25.926 0.00 0.00 0.00 2.29
2590 2805 9.508642 AAAAACAAAAAGGAGGAAAAACATGTA 57.491 25.926 0.00 0.00 0.00 2.29
2591 2806 7.994425 AAAACAAAAAGGAGGAAAAACATGT 57.006 28.000 0.00 0.00 0.00 3.21
2613 2828 5.057149 GCACCTAGTGAACTCTCTCAAAAA 58.943 41.667 0.00 0.00 35.23 1.94
2614 2829 4.345257 AGCACCTAGTGAACTCTCTCAAAA 59.655 41.667 0.00 0.00 35.23 2.44
2615 2830 3.898123 AGCACCTAGTGAACTCTCTCAAA 59.102 43.478 0.00 0.00 35.23 2.69
2616 2831 3.501349 AGCACCTAGTGAACTCTCTCAA 58.499 45.455 0.00 0.00 35.23 3.02
2617 2832 3.162147 AGCACCTAGTGAACTCTCTCA 57.838 47.619 0.00 0.00 35.23 3.27
2618 2833 4.266714 ACTAGCACCTAGTGAACTCTCTC 58.733 47.826 4.23 0.00 44.47 3.20
2619 2834 4.310022 ACTAGCACCTAGTGAACTCTCT 57.690 45.455 4.23 0.00 44.47 3.10
2628 2843 5.017490 ACTTGTACATCACTAGCACCTAGT 58.983 41.667 0.00 0.00 46.75 2.57
2629 2844 5.358442 AGACTTGTACATCACTAGCACCTAG 59.642 44.000 0.00 0.00 39.72 3.02
2630 2845 5.262009 AGACTTGTACATCACTAGCACCTA 58.738 41.667 0.00 0.00 33.79 3.08
2631 2846 4.090090 AGACTTGTACATCACTAGCACCT 58.910 43.478 0.00 0.00 33.79 4.00
2632 2847 4.457834 AGACTTGTACATCACTAGCACC 57.542 45.455 0.00 0.00 33.79 5.01
2633 2848 5.357314 TCCTAGACTTGTACATCACTAGCAC 59.643 44.000 17.58 4.30 33.79 4.40
2634 2849 5.506708 TCCTAGACTTGTACATCACTAGCA 58.493 41.667 17.58 7.36 33.79 3.49
2635 2850 5.591067 ACTCCTAGACTTGTACATCACTAGC 59.409 44.000 17.58 3.13 33.79 3.42
2636 2851 7.633193 AACTCCTAGACTTGTACATCACTAG 57.367 40.000 16.72 16.72 36.24 2.57
2637 2852 7.148289 CGAAACTCCTAGACTTGTACATCACTA 60.148 40.741 0.00 0.19 0.00 2.74
2638 2853 6.349445 CGAAACTCCTAGACTTGTACATCACT 60.349 42.308 0.00 0.00 0.00 3.41
2639 2854 5.800941 CGAAACTCCTAGACTTGTACATCAC 59.199 44.000 0.00 0.00 0.00 3.06
2640 2855 5.708697 TCGAAACTCCTAGACTTGTACATCA 59.291 40.000 0.00 0.00 0.00 3.07
2641 2856 6.127952 ACTCGAAACTCCTAGACTTGTACATC 60.128 42.308 0.00 0.00 0.00 3.06
2642 2857 5.711036 ACTCGAAACTCCTAGACTTGTACAT 59.289 40.000 0.00 0.00 0.00 2.29
2643 2858 5.068636 ACTCGAAACTCCTAGACTTGTACA 58.931 41.667 0.00 0.00 0.00 2.90
2644 2859 5.625921 ACTCGAAACTCCTAGACTTGTAC 57.374 43.478 0.00 0.00 0.00 2.90
2645 2860 7.750229 TTTACTCGAAACTCCTAGACTTGTA 57.250 36.000 0.00 0.00 0.00 2.41
2646 2861 6.645790 TTTACTCGAAACTCCTAGACTTGT 57.354 37.500 0.00 0.00 0.00 3.16
2647 2862 9.635520 TTAATTTACTCGAAACTCCTAGACTTG 57.364 33.333 0.00 0.00 0.00 3.16
2648 2863 9.857957 CTTAATTTACTCGAAACTCCTAGACTT 57.142 33.333 0.00 0.00 0.00 3.01
2649 2864 9.022884 ACTTAATTTACTCGAAACTCCTAGACT 57.977 33.333 0.00 0.00 0.00 3.24
2650 2865 9.288124 GACTTAATTTACTCGAAACTCCTAGAC 57.712 37.037 0.00 0.00 0.00 2.59
2651 2866 9.017509 TGACTTAATTTACTCGAAACTCCTAGA 57.982 33.333 0.00 0.00 0.00 2.43
2652 2867 9.804758 ATGACTTAATTTACTCGAAACTCCTAG 57.195 33.333 0.00 0.00 0.00 3.02
2654 2869 9.503399 AAATGACTTAATTTACTCGAAACTCCT 57.497 29.630 0.00 0.00 0.00 3.69
2679 2894 8.298140 CGAACCCATGGTGTATAAAAGTAAAAA 58.702 33.333 11.73 0.00 35.34 1.94
2680 2895 7.447853 ACGAACCCATGGTGTATAAAAGTAAAA 59.552 33.333 11.73 0.00 35.34 1.52
2681 2896 6.941436 ACGAACCCATGGTGTATAAAAGTAAA 59.059 34.615 11.73 0.00 35.34 2.01
2682 2897 6.372103 CACGAACCCATGGTGTATAAAAGTAA 59.628 38.462 11.73 0.00 35.34 2.24
2683 2898 5.875910 CACGAACCCATGGTGTATAAAAGTA 59.124 40.000 11.73 0.00 35.34 2.24
2684 2899 4.698304 CACGAACCCATGGTGTATAAAAGT 59.302 41.667 11.73 0.00 35.34 2.66
2685 2900 5.229921 CACGAACCCATGGTGTATAAAAG 57.770 43.478 11.73 0.00 35.34 2.27
2693 2908 2.625823 GGCACACGAACCCATGGTG 61.626 63.158 11.73 4.22 42.85 4.17
2694 2909 2.282180 GGCACACGAACCCATGGT 60.282 61.111 11.73 0.00 37.65 3.55
2695 2910 2.282110 TGGCACACGAACCCATGG 60.282 61.111 4.14 4.14 0.00 3.66
2696 2911 0.321210 TACTGGCACACGAACCCATG 60.321 55.000 0.00 0.00 0.00 3.66
2697 2912 0.618458 ATACTGGCACACGAACCCAT 59.382 50.000 0.00 0.00 0.00 4.00
2698 2913 1.268066 TATACTGGCACACGAACCCA 58.732 50.000 0.00 0.00 0.00 4.51
2699 2914 2.614829 ATATACTGGCACACGAACCC 57.385 50.000 0.00 0.00 0.00 4.11
2772 2987 9.913310 CTCTCTCTCTCTCTCTCTCTCTATATA 57.087 40.741 0.00 0.00 0.00 0.86
2773 2988 8.619281 TCTCTCTCTCTCTCTCTCTCTCTATAT 58.381 40.741 0.00 0.00 0.00 0.86
2774 2989 7.990055 TCTCTCTCTCTCTCTCTCTCTCTATA 58.010 42.308 0.00 0.00 0.00 1.31
2775 2990 6.857848 TCTCTCTCTCTCTCTCTCTCTCTAT 58.142 44.000 0.00 0.00 0.00 1.98
2776 2991 6.101881 TCTCTCTCTCTCTCTCTCTCTCTCTA 59.898 46.154 0.00 0.00 0.00 2.43
2777 2992 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2778 2993 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2779 2994 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2780 2995 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2781 2996 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2782 2997 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2783 2998 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2784 2999 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2785 3000 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2786 3001 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2787 3002 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2788 3003 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2789 3004 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2790 3005 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2791 3006 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2792 3007 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2793 3008 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2794 3009 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2795 3010 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2796 3011 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2797 3012 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2798 3013 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2799 3014 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2800 3015 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
2801 3016 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
2802 3017 4.646945 TCACTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
2803 3018 4.614475 TCACTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
2804 3019 4.646945 TCTCACTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
2805 3020 4.614475 TCTCACTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
2806 3021 4.646945 TCTCTCACTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
2807 3022 4.614475 TCTCTCACTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
2808 3023 5.543507 ATCTCTCACTCTCTCTCTCTCTC 57.456 47.826 0.00 0.00 0.00 3.20
2809 3024 5.426509 TCAATCTCTCACTCTCTCTCTCTCT 59.573 44.000 0.00 0.00 0.00 3.10
2810 3025 5.674525 TCAATCTCTCACTCTCTCTCTCTC 58.325 45.833 0.00 0.00 0.00 3.20
2811 3026 5.698741 TCAATCTCTCACTCTCTCTCTCT 57.301 43.478 0.00 0.00 0.00 3.10
2812 3027 6.949352 AATCAATCTCTCACTCTCTCTCTC 57.051 41.667 0.00 0.00 0.00 3.20
2813 3028 7.722949 AAAATCAATCTCTCACTCTCTCTCT 57.277 36.000 0.00 0.00 0.00 3.10
2820 3035 9.883142 CCCCTATATAAAATCAATCTCTCACTC 57.117 37.037 0.00 0.00 0.00 3.51
2821 3036 9.398921 ACCCCTATATAAAATCAATCTCTCACT 57.601 33.333 0.00 0.00 0.00 3.41
2822 3037 9.442047 CACCCCTATATAAAATCAATCTCTCAC 57.558 37.037 0.00 0.00 0.00 3.51
2823 3038 8.605947 CCACCCCTATATAAAATCAATCTCTCA 58.394 37.037 0.00 0.00 0.00 3.27
2824 3039 7.554476 GCCACCCCTATATAAAATCAATCTCTC 59.446 40.741 0.00 0.00 0.00 3.20
2825 3040 7.240616 AGCCACCCCTATATAAAATCAATCTCT 59.759 37.037 0.00 0.00 0.00 3.10
2826 3041 7.337942 CAGCCACCCCTATATAAAATCAATCTC 59.662 40.741 0.00 0.00 0.00 2.75
2827 3042 7.177878 CAGCCACCCCTATATAAAATCAATCT 58.822 38.462 0.00 0.00 0.00 2.40
2828 3043 6.948309 ACAGCCACCCCTATATAAAATCAATC 59.052 38.462 0.00 0.00 0.00 2.67
2829 3044 6.863322 ACAGCCACCCCTATATAAAATCAAT 58.137 36.000 0.00 0.00 0.00 2.57
2830 3045 6.274322 ACAGCCACCCCTATATAAAATCAA 57.726 37.500 0.00 0.00 0.00 2.57
2831 3046 5.512404 CGACAGCCACCCCTATATAAAATCA 60.512 44.000 0.00 0.00 0.00 2.57
2832 3047 4.935808 CGACAGCCACCCCTATATAAAATC 59.064 45.833 0.00 0.00 0.00 2.17
2833 3048 4.263331 CCGACAGCCACCCCTATATAAAAT 60.263 45.833 0.00 0.00 0.00 1.82
2834 3049 3.071892 CCGACAGCCACCCCTATATAAAA 59.928 47.826 0.00 0.00 0.00 1.52
2835 3050 2.635915 CCGACAGCCACCCCTATATAAA 59.364 50.000 0.00 0.00 0.00 1.40
2836 3051 2.253610 CCGACAGCCACCCCTATATAA 58.746 52.381 0.00 0.00 0.00 0.98
2837 3052 1.148446 ACCGACAGCCACCCCTATATA 59.852 52.381 0.00 0.00 0.00 0.86
2838 3053 0.105142 ACCGACAGCCACCCCTATAT 60.105 55.000 0.00 0.00 0.00 0.86
2839 3054 1.046472 CACCGACAGCCACCCCTATA 61.046 60.000 0.00 0.00 0.00 1.31
2840 3055 2.040606 ACCGACAGCCACCCCTAT 59.959 61.111 0.00 0.00 0.00 2.57
2841 3056 3.000819 CACCGACAGCCACCCCTA 61.001 66.667 0.00 0.00 0.00 3.53
2843 3058 4.699522 GACACCGACAGCCACCCC 62.700 72.222 0.00 0.00 0.00 4.95
2844 3059 2.951475 TTTGACACCGACAGCCACCC 62.951 60.000 0.00 0.00 0.00 4.61
2845 3060 1.098712 TTTTGACACCGACAGCCACC 61.099 55.000 0.00 0.00 0.00 4.61
2846 3061 0.028902 GTTTTGACACCGACAGCCAC 59.971 55.000 0.00 0.00 0.00 5.01
2847 3062 1.098712 GGTTTTGACACCGACAGCCA 61.099 55.000 0.00 0.00 0.00 4.75
2848 3063 1.652563 GGTTTTGACACCGACAGCC 59.347 57.895 0.00 0.00 0.00 4.85
2855 3070 0.521735 GATCTGCCGGTTTTGACACC 59.478 55.000 1.90 0.00 0.00 4.16
2856 3071 1.464997 GAGATCTGCCGGTTTTGACAC 59.535 52.381 0.00 0.00 0.00 3.67
2857 3072 1.808411 GAGATCTGCCGGTTTTGACA 58.192 50.000 0.00 0.00 0.00 3.58
2858 3073 0.721718 CGAGATCTGCCGGTTTTGAC 59.278 55.000 0.00 0.00 0.00 3.18
2859 3074 0.391130 CCGAGATCTGCCGGTTTTGA 60.391 55.000 13.39 0.00 40.78 2.69
2860 3075 1.369091 CCCGAGATCTGCCGGTTTTG 61.369 60.000 18.55 3.10 43.93 2.44
2861 3076 1.078426 CCCGAGATCTGCCGGTTTT 60.078 57.895 18.55 0.00 43.93 2.43
2862 3077 0.974010 TACCCGAGATCTGCCGGTTT 60.974 55.000 18.55 9.73 43.93 3.27
2863 3078 1.380785 TACCCGAGATCTGCCGGTT 60.381 57.895 18.55 9.56 43.93 4.44
2864 3079 1.828660 CTACCCGAGATCTGCCGGT 60.829 63.158 18.55 13.92 43.93 5.28
2865 3080 2.565645 CCTACCCGAGATCTGCCGG 61.566 68.421 14.42 14.42 44.94 6.13
2866 3081 2.565645 CCCTACCCGAGATCTGCCG 61.566 68.421 0.00 0.00 0.00 5.69
2867 3082 2.210711 CCCCTACCCGAGATCTGCC 61.211 68.421 0.00 0.00 0.00 4.85
2868 3083 2.210711 CCCCCTACCCGAGATCTGC 61.211 68.421 0.00 0.00 0.00 4.26
2869 3084 0.828343 GACCCCCTACCCGAGATCTG 60.828 65.000 0.00 0.00 0.00 2.90
2870 3085 1.542679 GACCCCCTACCCGAGATCT 59.457 63.158 0.00 0.00 0.00 2.75
2871 3086 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
2872 3087 2.019272 AGGACCCCCTACCCGAGAT 61.019 63.158 0.00 0.00 42.15 2.75
2873 3088 2.619484 AGGACCCCCTACCCGAGA 60.619 66.667 0.00 0.00 42.15 4.04
2874 3089 2.444140 CAGGACCCCCTACCCGAG 60.444 72.222 0.00 0.00 42.02 4.63
2875 3090 2.560083 TTCAGGACCCCCTACCCGA 61.560 63.158 0.00 0.00 42.02 5.14
2876 3091 2.039951 TTCAGGACCCCCTACCCG 59.960 66.667 0.00 0.00 42.02 5.28
2877 3092 1.082392 AGTTCAGGACCCCCTACCC 59.918 63.158 0.00 0.00 42.02 3.69
2878 3093 0.546988 ACAGTTCAGGACCCCCTACC 60.547 60.000 0.00 0.00 42.02 3.18
2879 3094 0.613777 CACAGTTCAGGACCCCCTAC 59.386 60.000 0.00 0.00 42.02 3.18
2880 3095 1.198759 GCACAGTTCAGGACCCCCTA 61.199 60.000 0.00 0.00 42.02 3.53
2881 3096 2.529744 GCACAGTTCAGGACCCCCT 61.530 63.158 0.00 0.00 45.74 4.79
2882 3097 2.034221 GCACAGTTCAGGACCCCC 59.966 66.667 0.00 0.00 0.00 5.40
2883 3098 0.678048 GATGCACAGTTCAGGACCCC 60.678 60.000 0.00 0.00 0.00 4.95
2884 3099 0.326264 AGATGCACAGTTCAGGACCC 59.674 55.000 0.00 0.00 0.00 4.46
2885 3100 3.334583 TTAGATGCACAGTTCAGGACC 57.665 47.619 0.00 0.00 0.00 4.46
2886 3101 5.446473 CGATTTTAGATGCACAGTTCAGGAC 60.446 44.000 0.00 0.00 0.00 3.85
2887 3102 4.631377 CGATTTTAGATGCACAGTTCAGGA 59.369 41.667 0.00 0.00 0.00 3.86
2888 3103 4.631377 TCGATTTTAGATGCACAGTTCAGG 59.369 41.667 0.00 0.00 0.00 3.86
2889 3104 5.784750 TCGATTTTAGATGCACAGTTCAG 57.215 39.130 0.00 0.00 0.00 3.02
2890 3105 5.065090 CCATCGATTTTAGATGCACAGTTCA 59.935 40.000 0.00 0.00 42.92 3.18
2891 3106 5.065218 ACCATCGATTTTAGATGCACAGTTC 59.935 40.000 0.00 0.00 42.92 3.01
2892 3107 4.943705 ACCATCGATTTTAGATGCACAGTT 59.056 37.500 0.00 0.00 42.92 3.16
2893 3108 4.517285 ACCATCGATTTTAGATGCACAGT 58.483 39.130 0.00 0.00 42.92 3.55
2894 3109 6.422223 GTTACCATCGATTTTAGATGCACAG 58.578 40.000 0.00 0.00 42.92 3.66
2895 3110 6.358118 GTTACCATCGATTTTAGATGCACA 57.642 37.500 0.00 0.00 42.92 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.