>input_sequence_65446
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-----------ATGGAGCCGCCGCCTTCTCCGCTGGGCACCG------GCGCCGGCGCTGTCTGCTGCATGTGCGGCGAT
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGCGTGCCA-----------
-TGCGCGATCGCTCCAGCTCTCCTTCTCCTATCGATCGAGCCATCTGACCTGGGCGTGTGTTTGTTATGTGTCTAGATAC
TGCAGCGATCTGTACCCGAGGGCCACGGCGTATAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCACGCCCA
ACCCCACGCTCAC------CCGGTGGCTAGCAAGAAGGCGGACAAACGGAAGATGGTGGCATCAACGGAGACGTCCACCT
CCGACGAGGAGGAGCGGCGGCAGCACGAGGCCGGATGCGCCACTGCTACGAGGTCCAGGAGATCGGCTGCGGAGGTTGGT
AAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCAGCGAAGGGGAACAGCGG
CGACAAGAAGCCCAAGGTCGACGAGACGCCAGCGCTGCCTCCGTCGCCGCGCACGGCAGCGAAAGGGAACAGCGGTGACA
AGAAGCCCAAGGTCGATGAGAGGC---CGGCGCTGCCTCCGTCGCCGGGCGCGGCAGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAGGTCGACAAGAGGCCAGC---GCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAA------------
---------------------------------------------------------------CGGCGACAAGAAGCCTA
AGGTCGACGAGTGGACGGCGCTGCCCCCGTCCCCGGGCACGGCGGCGAAGGGGAGCAGCGGCGACAAGAAGCCGATGCAA
GCGGGGAAGTTGGCGCGGCCGGGTAGGGTGAAGGTGAGGAGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAG-----
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>chr2D_1_TraesCS2D01G315500
CTCCGCCTCACAGGGTCCGCCGCGGCGACCACCCGCCCTGAAACTGCGATGCAGGGCCCGCCGCACCATGGCCCTTG-CC
GGCGACAGCGGCGGCTGGGGATGGAGCAACAAGGAGGGACTGGCGGCTAGGGATCGGGGGCCCTTAGTGCCGCCCAAGGG
GAGGCGATGCGAGGGGACGGGAGGGGAGCTATGATGTTGATGTTTTTCTTGATAAAGGGTGTTTTTATTAACGCAACAAG
TAGCATCAAGAGGATACGAATCGAATTGAGCGGCACCCGATCTGTGCGTAGCTAGGATGCATACACACAGCCAAAGGCAA
CAAGTCTAACATAGAAAGAAAATAAAATGACAAATCAGCACCAGTAAAGATGAAAATAAA--GACATAGCCGGAGATGTT
GATCTATTCTAACCAGCCATGATGGTGCGGCGCAATGAGCCGTCCTTGTCCCTAGCACCGAATCGTCAATGTCGCTGGTT
GTCTCCAACAAGCCGAGCCGAGGTGGCCGGAGCGACGCGCCATCGCCCATCGGGATCACACGGCAGGACGAACAGATAGA
TGACGGACGCATGGGTCCCATCATTAGAAAATGAAACGAAACCACAGCCCTTAATTGCA-GTCTTGTCCTCAGTCCACGG
TAGCCATTCACATTCATCCCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCGT
----------GGGAGAGTCCTTGGG-CTATATAAATATGAAG----GCCACCTCGTCTCCCCCC-----TCTCCAACCCT
ACCCC------CGTACTCTACCTCACGAAAGCTGCCCCGGTACGCCCCGCAACCATAAACGCGACGCCCAGAGAAGATGT
GAGTGCGTTAATGCCTAGGATCGTACGCTGCGAGCATCTACATATT--------CAC---CCCGGACCTTT------CTC
CCGGTCTCGACCGTCTCACTCCATCTCCGTCCCATCCACCTGCAGCTAGCAGCGGCC----GCGCGCGCTGTGGATCATA
AGCAATCTTCCATGGAGCCGCCGCCTTCTCCGCTGGGCACCG------GCGCCGGCGCTGTCTGCTGCATGTGCGGCGAT
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGCGTGCCA-----------
-TGCGCGATCGCTCCAGCTCTCCTTCTCCTATCGATCGAGCCATCTGACCTGGGCGTGTGTTTGTTATGTGTCTAGATAC
TGCAGCGATCTGTACCCGAGGGCCACGGCGTATAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCACGCCCA
ACCCCACGCTCAC------CCGGTGGCTAGCAAGAAGGCGGACAAACGGAAGATGGTGGCATCAACGGAGACGTCCACCT
CCGACGAGGAGGAGCGGCGGCAGCACGAGGCCGGATGCGCCACTGCTACGAGGTCCAGGAGATCGGCTGCGGAGGTTGGT
AAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCAGCGAAGGGGAACAGCGG
CGACAAGAAGCCCAAGGTCGACGAGACGCCAGCGCTGCCTCCGTCGCCGCGCACGGCAGCGAAAGGGAACAGCGGTGACA
AGAAGCCCAAGGTCGATGAGAGGC---CGGCGCTGCCTCCGTCGCCGGGCGCGGCAGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAGGTCGACAAGAGGCCAGC---GCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAA------------
---------------------------------------------------------------CGGCGACAAGAAGCCTA
AGGTCGACGAGTGGACGGCGCTGCCCCCGTCCCCGGGCACGGCGGCGAAGGGGAGCAGCGGCGACAAGAAGCCGATGCAA
GCGGGGAAGTTGGCGCGGCCGGGTAGGGTGAAGGTGAGGAGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCCAGG
ATCACGGAATCAAAAGGGGAAGTAGCTGGCAACTTAGCCAAATAGCTAGCCAACATCGACATTGGTGATTTGGTGTCGAT
GTATGTACATATCGTTTGCCCGTCGTGTACGGGTTTCCCCTCTCTTTTTTGGGAGAGAGTCGACTACCGTGGTAGCGCTG
TACAGATCTTAAACCGTCAGTTTTAGTATATACCAGTTGACGTGCATAGAGGGGGCGGTTTGACTTTATGTCTGGGCCGC
GATGAGCTGGTTGCTCCGT----------------------------------------------------------GCG
GTGGTATGTTGGGGCGATGGCCTCCCTCAAGAGATGAGTCAGTGCAACGGCCATGGTCTGCGAACGGTTACACTTCGCAA
CTTAGGTTGTAGGTGGTTAGGCCGTGCAGCATTGTAACTTGAGAGTGAGTGGTGGTATGTCGGGGTGGTGGCCCTCGAAG
GTTAGGTCAGTAAGCCGGTCAAGGAGCCCAAGGTCGACGAGAAGCCAGCGCTGCCACTGTCGCTGGGGATGGTAGCGAAG
GGGAACAACAACGATGAGAAGCCGATGCAGGCGAGAAAGTTGGCGCGGCTGGGTAGGGTCAAGGTGAGGAGGTGCAAACT
CCTGGCAGGTGTGAGAATAAAAGGGTAAGCAGCTAGCCACCATCGACAGATGTCGATAAATATATACATCGTTTACTCGT
CATATACATGTTTTTCCTCCTTTTTGTTTTTTGAGAGAGTTCACTAGGTGCTAGTGATGTACAAGTCTAGGAGTTTCGAG
TAAATTAAGTCATTTTTTACTTTTATACACCATGGGTTCGTGTGCCAGTATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGA
GAGATTGATTTTATATAGGGGTGGCTGTCGGTGTCAAAACCGGCAGATCTCGGGTAGGGGGTCCTGAACTGTGCATCTAA
AATCGATGGTAAC
>chr2B_1
CTCTGCATCACAGGGTCCGCCGCGGCGACCACCCGCCCTGGATCTGTGGTGCTGGGCCCGCCGCCATCGCGACCTTTACC
GGCAGCAGCGGACGCTGGGGATGGAGCAACGGGGAGGGACAGGCGGCTAGGGGCCGGGGGCCCCTGGCGCCGCCCAAGGG
AGGCCGC-GCGAGGGGACGGGAGGGAAGCCATGATGTTGATGTTTTTCTCCATAAATGGCGTGTTTATTAACGCAACAAG
TAGCATCAAAAGGATACGAATCGAATTGAGCGGCACCCGGTCTCTGCGTAGGCAGGATGCATACACACAGCCAAAGGCAC
CAAGTCTAACGTAGAAAGGAAATAAAACGACAAGTCAGCACCAGTAAAGATGAAAATAAAACGACATAGCCGGAGATGTT
GATCTATTCTAACCAGCCATGATGATGCAGTGCAATGAGCCGTCCTTGTCCCTAGCACCGAATCGTCAATGTCGCTGGTT
GTCTCCAACC-----AGCCGAGGTGGCCGGAGCGACGCGCCATCGCCTATCGGGATCACACGGAAGGACGAACAGATAGA
TGACGGACGCATGGGTCCCCTCGTAAGAAAATGAAAATAAACCACAGCCCTTAATTGCA-GTCTTGTCCTCAGTCCATGG
TAGCCATTCACATTCATC------------------------------------TCTCTCCCTCTCTCTCTCTCTCTCGC
----------CGGAGAGTCCTTGGGTCTATATAAATAGGAAG----GCCACCTCGTCTCCCACCCCCCATCTCCAACCCT
A-CCC------CGTGCTCTACCTCACGAAAGCTGCCCAGGTACGCCCCGCAACCATAAACGCGACGCCCAGAGAAGATGT
GAGTGCGTTAATGCCTAGGCTCGTACGCTACGAGCATCTACATATCTACTGATACAC---CCCGGACCTTT------CTC
GG--------CCGTCTCACTTCA------TCCCATCCACCTGCAGCCGGCGT----------------------------
---AAGCTTCCATGGAGCCGCCACTTTCTCCGCTGGGCGCCG------GCGC------TGTCTGCTGCATGTGCGGCGAT
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGTGTGCCTTGCG------C
TTGCGCGCTCGCTCGAGCTCTCCTG------TCGATCGATCCATCTCACCTGACCGTGTCTTTGTTATGTGTGTAGATAC
TGCAGCGATCTGTATCCGAGGGCCACGGCGTACAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCATGCCCA
ACCCCACGCTCAG------CCGGTGAAAAACAAGAAGGCGGAGAAACGGAAGATGGTGGCATCAACGGAGACGTCCGCCT
CCGGCGAGGAGGAGCGGCGGCAGCACGAGGCCGGATGCACCACTGCTACGAGGTCGAGGAGATCGGCTGCGGAGGTTGGT
AAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCAGGCACGGCAGCGAAGGGGAACAGCGG
TGACACGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAAGGAAACAGCGGCGACA
AGAAGCCTAAGGTCGACGAGTGGC---CGGTGCTGCCCCCGTCGCCGGGCGTGGCGGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAGGTCGACAAGAGGCCAGC---GCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAA------------
---------------------------------------------------------------CGGCGACAAGAAGCCTA
AGGTCGACGAGTGGACGGCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGGGGAGCAGCGGCGACAAGAAGCCGATGCAG
GCGGGGAAGCTGGCGCGGCCGGGTAGGGTCAAGGTGAGGAGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCTAGG
ATCACGGAATCAAAAGGGGAAGTAGCTGGCAACT-AGCCAAATAGCTAGCCACCGTCGACAT-----------------T
GTATGTAAATATCGTTTGCCCGTCGTGTACGGGTTTTTCGTCTCTTTTTGGGGAGAGAGTCGACTACCGTGCTAGTGCTG
TACAAATCTTAAGCCGTCAGTTTTT---TATACCAGTTGACGTGCATAGATGGTGCGGTTTGACTTTACGTCGGGGCGGC
GATGAGCTGGT---------------------------------------------------------------------
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>chr2A_400
TCTTT---------------------------------------------------------------------------
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--------CTAACCAGCCATGATGATGCGGCGCAATGAGCCGTCCTTGTCCCTAGCACCGAATCGTCAATGTCGCTGGTT
GTCTCGAACCAGCCGAGCCGAGGTGGCCGGAGCGACGCGCCATCGCCCATCGGGATCACACGGCAGGACGAACAGATAGA
TGACGGGCGCATGGGTCCCATCATCAGAAAATGAAACTAAACCACAGCCCTTAATTGCAAGTCTTGTCCTCAGTCCACGG
TAGCCATTCACATTCATC------------------------------------TC----CCTCTCTCTCTCTCTCGCGC
GCGCGTCGGAGGGAGAGTCCTTGGGTCTATATAAATAGGAAGGAAGGCCACCTCGTCTCCC--------TCTCCTACCCT
A-CCCCCCGGGCGTACTCAACCTCACGGAAGCTGCCCCGGTACGCCCCGCAACCATAAACGCGACGCCCAGAGAAGATGT
GAGCGCGTTAATGCCTAGCCTCGTACGCTACGAGCATCCACATATCTACCAATCCGCACACCCGGACCTTTCCCGGCCTC
GG--------CCGTCTCACTTCA------TCCCATCCACCTGCAGCTAGCAGCGGCCTGCCGCGCGCGCTGTGGATCATA
AGCAAGCTTCCATGGAGCCGCCACCTTCTCCGCTGGGCGCCGGCGCCTGCGC------TGTCTGCTGCATGTGCGGCGAC
CGCGGCCTGCCGCACGAGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGGTGCGTGCCGGCGTGTGTGCC
TTGCGCGATCGCTCCAGCTCTCCTTCTCCTATCGATCGATCCATCTGACCTGGGCGTGTGTTTGTTATGTGTGTAGATAC
TGCAGCGATCTGTACCCGAGGGCCACGGCGTACAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCCACGCCCA
AGCGCACGCTCAAGCTCAACCGGTGGCTAGCAAGAAGGCGGAGAAACGGAAGATGGTGCAATCAACGGAGACGTCCACCT
CCGACGAGGAGGCGCGGCGGCAGCACGAGGCCGGATGCGCCACTGCTACGAGGTCCAGGAGATCGGCCGCGGAGGTTGGT
CAGCCGGTCAAGAAGCCCAAGGTCGACGAGAGGCCACCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGCGGAACAGCGG
CGACAAGAAGCCTAAGGTCGACGAGTGGCCAGCGCTGCCCCCGTCGCCCGGCACGGCGGCGAAGGGGAACAGCGGTGACA
AGAAGCCCAAGGTCGACGACAGGCAAGCGCTGCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAGCGGTGACAAG
AAGCCCAAAGTCGACGACAGGCAAGCGCTGCTGCCTCCGTCGCCGGGCACGGCGGCGAAGGGGAACAGCGGTGACAAGAA
GCCCAAAGTCGACGAGAGGCCACCGCTGCCTCCGTCGCCGGGCACGAAGGCGAAGGGGAACAGCGGCGACAAGAAACCTA
AGGTCGACGAGTGGCCGGCGCTGCCCCCGTCGCCGGGCACGGCGGCGAAGGGAAACAGCGGCGACAAGAAGCCGATGCAG
GCGGGGAAGCTGGCGCGGCAGGGTAGGGTCAAGGTGAGGCGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCTAGG
ATCACGGAATCAAAAGGGGAAGTAGCT--------------------AGCCACCTTCGAC-------ATTTGGTGTCGAT
GTATGTAAATACCGTTTACCCGTCGTGTACGGGTTTTCTCTCTCTTTTTTGGGAGAGAGTCGACTACCATACTAGTGCTG
TACACATCTTAAGCCGTCAGTTTTA---TACACCAGTTGACGTGCACAGAGGGGTCGGTTTGACTTTATGCCGGGGCGGC
GATGAGCTGGTGCGACTGCTTTAGTCTGCATATTGCATCCGATTGCCCCGTGAAGCATAGATTGGAGGTGGAAGTGAGCG
GTGGCATGTCGGAGCGATGACATCC----AGAGATGAGTCAGTGCAACAGTCATGGTCTATGAACGGTTACCCGTCGCAA
CATAGATTGTAAGTGGTTAGGCTGTGCGACACCGTAACTTGAGAGTGAGTGGTGGTATGTCGGAACGGCGGCCCTGAAAG
GTGAGGTCGGTCAGCCCGTCAAGAAG-CCAAGGTCGACAAGAAGCCAGTGTTGCCCCTGTCGCTGGGGATGGCAGCGAAG
GGGAACAGCAACGA------------------------------------------------------------------
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>SNPs
---S--S---------------------------------S-S---S-S---S-----------SSSSSS-S----S---
---SS------SS-----------------SS--------S-----------SS---------S-S-S------------
SS-S--SS-----------------S---S-------------------SS-----S--S--S-----------------
---------S-----------------------------S---S-------SS--------------------------S
----------S-------S--------S-----S----------------------------------------------
------------------------S-------------------------------------------------------
---------S----------------------------------------------------------------------
------------------------S------------S------------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--------------S---S
-------------------------------------S-----------------------S------------------
-S------------------------------------------------------------------------------
-------------------S---------S---------------S----------------------------------
SSSSSSSSSS----------S--SSSSSS---------------------------------------------------
-----S----------------S---------------S-------------SSSSSS----------------------
--------------------------------------------------------------------S-----------
---------------------------------------S--------------------------------S-------
--------------------------------S-----------------------------------------------
------------S-----------------------------S-------------------------------------
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--------------------------S------------S---------S-------S----------------------
----------------S-------------S------------------------S------------------------
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-------------------------------S-----------------------------------------------S
---------S-------------------S----------------------------------------------S---
----------------------------------S-----------------S-S-------SSSSS-------------
-------S----------------------------S----------------------------------S---S----
----S-------S------------SSS--------------------------------------------S----S--
-----------SSSS-S-S-------------------------------------------------------------
----S----S--S------S-S---SSSS-------------------S-S--------SS----------S-S------
-S---S-----S----------S----SS--SS------------------------------SSS--S------SS---
--S-----S--S----S------S--S-----------S---------S-S----S----------------S-------
-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_984
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----TCTCGACCGTCTCACTCCAT--------------------------------------------------------
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>reverse_3061
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--------------------GTGGCTGTCGGTGTCAAAAC----------------------------------------
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