Multiple sequence alignment - TraesCS2D01G303300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G303300 chr2D 100.000 2576 0 0 1 2576 387255218 387257793 0.000000e+00 4758
1 TraesCS2D01G303300 chr2D 94.545 385 20 1 2133 2516 608400952 608401336 6.140000e-166 593
2 TraesCS2D01G303300 chr2A 94.556 1396 51 13 758 2135 523990786 523992174 0.000000e+00 2134
3 TraesCS2D01G303300 chr2A 91.440 257 17 2 13 266 523988971 523989225 5.280000e-92 348
4 TraesCS2D01G303300 chr2B 91.833 1506 72 26 652 2138 458500951 458502424 0.000000e+00 2052
5 TraesCS2D01G303300 chr4D 95.801 381 13 3 2133 2511 505321918 505322297 1.690000e-171 612
6 TraesCS2D01G303300 chrUn 95.989 374 14 1 2138 2510 24426384 24426011 7.880000e-170 606
7 TraesCS2D01G303300 chrUn 95.276 381 16 2 2136 2515 103379751 103379372 1.020000e-168 603
8 TraesCS2D01G303300 chr6D 94.236 399 20 3 2128 2523 147692998 147693396 7.880000e-170 606
9 TraesCS2D01G303300 chr6A 95.733 375 15 1 2138 2511 499430193 499430567 1.020000e-168 603
10 TraesCS2D01G303300 chr1D 94.615 390 19 2 2138 2525 17995200 17995589 1.020000e-168 603
11 TraesCS2D01G303300 chr3D 95.503 378 14 3 2135 2511 531269851 531270226 3.670000e-168 601
12 TraesCS2D01G303300 chr7A 95.455 374 16 1 2144 2516 127670088 127670461 1.710000e-166 595


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G303300 chr2D 387255218 387257793 2575 False 4758 4758 100.000 1 2576 1 chr2D.!!$F1 2575
1 TraesCS2D01G303300 chr2A 523988971 523992174 3203 False 1241 2134 92.998 13 2135 2 chr2A.!!$F1 2122
2 TraesCS2D01G303300 chr2B 458500951 458502424 1473 False 2052 2052 91.833 652 2138 1 chr2B.!!$F1 1486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 1640 0.037326 GGCAGATCACAGGTCGACAA 60.037 55.0 18.91 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 3028 0.106719 ACAACCCACACACCCAAGAG 60.107 55.0 0.0 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.439108 AAGGGAGTACATCATTTAGCTTAGT 57.561 36.000 0.00 0.00 0.00 2.24
31 32 8.548880 AAGGGAGTACATCATTTAGCTTAGTA 57.451 34.615 0.00 0.00 0.00 1.82
67 68 7.279313 TCCTACTTACATAAAGCGAATTTGACC 59.721 37.037 0.00 0.00 38.93 4.02
71 72 7.807907 ACTTACATAAAGCGAATTTGACCTTTG 59.192 33.333 0.00 0.00 38.93 2.77
109 110 9.129209 GACCTTTCAAACTTTAACTATCAATGC 57.871 33.333 0.00 0.00 0.00 3.56
133 134 9.639563 TGCCTTTAAATATGTTCAGATTGGATA 57.360 29.630 0.00 0.00 0.00 2.59
150 151 9.075678 AGATTGGATATTTGAAAAGCATAGAGG 57.924 33.333 0.00 0.00 0.00 3.69
154 155 6.777580 GGATATTTGAAAAGCATAGAGGGGAA 59.222 38.462 0.00 0.00 0.00 3.97
214 215 1.448814 TAGGTCACCACCCTCCTCCA 61.449 60.000 0.00 0.00 45.12 3.86
234 238 1.079127 CACCAGTCCCATCGGTGTC 60.079 63.158 0.00 0.00 44.27 3.67
239 243 0.323178 AGTCCCATCGGTGTCGTAGT 60.323 55.000 0.00 0.00 37.69 2.73
261 265 1.037579 GGAAAATCGGGAAGGCCTGG 61.038 60.000 5.69 0.00 41.20 4.45
266 270 0.631212 ATCGGGAAGGCCTGGATTTT 59.369 50.000 5.69 0.00 41.20 1.82
267 271 0.323360 TCGGGAAGGCCTGGATTTTG 60.323 55.000 5.69 0.00 41.20 2.44
268 272 0.611896 CGGGAAGGCCTGGATTTTGT 60.612 55.000 5.69 0.00 36.87 2.83
282 1351 4.111916 GGATTTTGTGTGGAAGTTGTGTG 58.888 43.478 0.00 0.00 0.00 3.82
283 1352 2.645730 TTTGTGTGGAAGTTGTGTGC 57.354 45.000 0.00 0.00 0.00 4.57
291 1360 4.109766 GTGGAAGTTGTGTGCTTAAAACC 58.890 43.478 0.00 0.00 0.00 3.27
292 1361 3.181495 TGGAAGTTGTGTGCTTAAAACCG 60.181 43.478 0.00 0.00 0.00 4.44
296 1365 3.940221 AGTTGTGTGCTTAAAACCGTGTA 59.060 39.130 0.00 0.00 0.00 2.90
299 1368 3.231160 GTGTGCTTAAAACCGTGTATGC 58.769 45.455 0.00 0.00 0.00 3.14
314 1383 4.802039 CGTGTATGCGTCTATTAGTTTGGT 59.198 41.667 0.00 0.00 0.00 3.67
315 1384 5.290158 CGTGTATGCGTCTATTAGTTTGGTT 59.710 40.000 0.00 0.00 0.00 3.67
322 1391 6.038382 TGCGTCTATTAGTTTGGTTGTTTGAA 59.962 34.615 0.00 0.00 0.00 2.69
333 1402 5.623956 TGGTTGTTTGAAGAACTAGAGGA 57.376 39.130 0.00 0.00 33.17 3.71
335 1404 6.419791 TGGTTGTTTGAAGAACTAGAGGAAA 58.580 36.000 0.00 0.00 33.17 3.13
375 1444 4.322539 CACGATGAAAGCAAACATCATGTG 59.677 41.667 14.09 11.32 41.75 3.21
392 1461 3.404224 TGTGCGGTGTGTTAAGGATTA 57.596 42.857 0.00 0.00 0.00 1.75
411 1480 8.127150 AGGATTACTTCTTCAAAATCAAAGGG 57.873 34.615 0.00 0.00 31.38 3.95
412 1481 6.813649 GGATTACTTCTTCAAAATCAAAGGGC 59.186 38.462 0.00 0.00 31.38 5.19
413 1482 6.976934 TTACTTCTTCAAAATCAAAGGGCT 57.023 33.333 0.00 0.00 0.00 5.19
414 1483 5.205759 ACTTCTTCAAAATCAAAGGGCTG 57.794 39.130 0.00 0.00 0.00 4.85
415 1484 4.651045 ACTTCTTCAAAATCAAAGGGCTGT 59.349 37.500 0.00 0.00 0.00 4.40
416 1485 5.129320 ACTTCTTCAAAATCAAAGGGCTGTT 59.871 36.000 0.00 0.00 0.00 3.16
417 1486 5.612725 TCTTCAAAATCAAAGGGCTGTTT 57.387 34.783 0.00 0.00 0.00 2.83
418 1487 5.358922 TCTTCAAAATCAAAGGGCTGTTTG 58.641 37.500 6.55 6.55 38.55 2.93
419 1488 4.070630 TCAAAATCAAAGGGCTGTTTGG 57.929 40.909 11.32 0.00 37.89 3.28
420 1489 3.708631 TCAAAATCAAAGGGCTGTTTGGA 59.291 39.130 11.32 0.00 37.89 3.53
421 1490 4.347583 TCAAAATCAAAGGGCTGTTTGGAT 59.652 37.500 11.32 0.00 37.89 3.41
422 1491 4.980339 AAATCAAAGGGCTGTTTGGATT 57.020 36.364 11.32 4.21 37.89 3.01
423 1492 3.967332 ATCAAAGGGCTGTTTGGATTG 57.033 42.857 11.32 0.00 37.89 2.67
424 1493 1.344114 TCAAAGGGCTGTTTGGATTGC 59.656 47.619 11.32 0.00 37.89 3.56
425 1494 1.070445 CAAAGGGCTGTTTGGATTGCA 59.930 47.619 5.32 0.00 34.34 4.08
426 1495 1.648116 AAGGGCTGTTTGGATTGCAT 58.352 45.000 0.00 0.00 0.00 3.96
427 1496 1.648116 AGGGCTGTTTGGATTGCATT 58.352 45.000 0.00 0.00 0.00 3.56
428 1497 1.551883 AGGGCTGTTTGGATTGCATTC 59.448 47.619 0.00 0.00 0.00 2.67
429 1498 1.275856 GGGCTGTTTGGATTGCATTCA 59.724 47.619 10.55 0.00 0.00 2.57
430 1499 2.093341 GGGCTGTTTGGATTGCATTCAT 60.093 45.455 10.55 0.00 0.00 2.57
431 1500 3.192466 GGCTGTTTGGATTGCATTCATC 58.808 45.455 10.55 0.00 0.00 2.92
432 1501 2.855963 GCTGTTTGGATTGCATTCATCG 59.144 45.455 10.55 0.00 0.00 3.84
433 1502 3.674138 GCTGTTTGGATTGCATTCATCGT 60.674 43.478 10.55 0.00 0.00 3.73
434 1503 4.095410 TGTTTGGATTGCATTCATCGTC 57.905 40.909 10.55 0.00 0.00 4.20
435 1504 3.758023 TGTTTGGATTGCATTCATCGTCT 59.242 39.130 10.55 0.00 0.00 4.18
436 1505 4.100529 GTTTGGATTGCATTCATCGTCTG 58.899 43.478 10.55 0.00 0.00 3.51
437 1506 1.672363 TGGATTGCATTCATCGTCTGC 59.328 47.619 10.55 0.00 36.45 4.26
438 1507 1.002033 GGATTGCATTCATCGTCTGCC 60.002 52.381 10.55 0.00 35.02 4.85
439 1508 1.672363 GATTGCATTCATCGTCTGCCA 59.328 47.619 3.73 0.00 35.02 4.92
440 1509 1.753930 TTGCATTCATCGTCTGCCAT 58.246 45.000 0.00 0.00 35.02 4.40
441 1510 1.018910 TGCATTCATCGTCTGCCATG 58.981 50.000 0.00 0.00 35.02 3.66
442 1511 0.317603 GCATTCATCGTCTGCCATGC 60.318 55.000 0.00 0.00 35.44 4.06
443 1512 0.309922 CATTCATCGTCTGCCATGCC 59.690 55.000 0.00 0.00 0.00 4.40
444 1513 0.107066 ATTCATCGTCTGCCATGCCA 60.107 50.000 0.00 0.00 0.00 4.92
445 1514 0.322366 TTCATCGTCTGCCATGCCAA 60.322 50.000 0.00 0.00 0.00 4.52
446 1515 0.322366 TCATCGTCTGCCATGCCAAA 60.322 50.000 0.00 0.00 0.00 3.28
447 1516 0.527113 CATCGTCTGCCATGCCAAAA 59.473 50.000 0.00 0.00 0.00 2.44
448 1517 1.135527 CATCGTCTGCCATGCCAAAAT 59.864 47.619 0.00 0.00 0.00 1.82
449 1518 2.121291 TCGTCTGCCATGCCAAAATA 57.879 45.000 0.00 0.00 0.00 1.40
450 1519 2.653726 TCGTCTGCCATGCCAAAATAT 58.346 42.857 0.00 0.00 0.00 1.28
451 1520 3.023119 TCGTCTGCCATGCCAAAATATT 58.977 40.909 0.00 0.00 0.00 1.28
452 1521 3.117794 CGTCTGCCATGCCAAAATATTG 58.882 45.455 0.00 0.00 36.25 1.90
465 1534 5.295431 CAAAATATTGGCGTTGACTGAGA 57.705 39.130 0.00 0.00 32.69 3.27
466 1535 5.327091 CAAAATATTGGCGTTGACTGAGAG 58.673 41.667 0.00 0.00 32.69 3.20
467 1536 4.471904 AATATTGGCGTTGACTGAGAGA 57.528 40.909 0.00 0.00 0.00 3.10
468 1537 4.679373 ATATTGGCGTTGACTGAGAGAT 57.321 40.909 0.00 0.00 0.00 2.75
469 1538 5.791336 ATATTGGCGTTGACTGAGAGATA 57.209 39.130 0.00 0.00 0.00 1.98
470 1539 3.953712 TTGGCGTTGACTGAGAGATAA 57.046 42.857 0.00 0.00 0.00 1.75
471 1540 3.953712 TGGCGTTGACTGAGAGATAAA 57.046 42.857 0.00 0.00 0.00 1.40
472 1541 4.471904 TGGCGTTGACTGAGAGATAAAT 57.528 40.909 0.00 0.00 0.00 1.40
473 1542 4.183865 TGGCGTTGACTGAGAGATAAATG 58.816 43.478 0.00 0.00 0.00 2.32
474 1543 4.184629 GGCGTTGACTGAGAGATAAATGT 58.815 43.478 0.00 0.00 0.00 2.71
475 1544 4.268884 GGCGTTGACTGAGAGATAAATGTC 59.731 45.833 0.00 0.00 0.00 3.06
476 1545 5.105752 GCGTTGACTGAGAGATAAATGTCT 58.894 41.667 0.00 0.00 32.51 3.41
477 1546 5.005203 GCGTTGACTGAGAGATAAATGTCTG 59.995 44.000 0.00 0.00 29.64 3.51
478 1547 6.096036 CGTTGACTGAGAGATAAATGTCTGT 58.904 40.000 0.00 0.00 29.64 3.41
479 1548 6.587990 CGTTGACTGAGAGATAAATGTCTGTT 59.412 38.462 0.00 0.00 29.64 3.16
480 1549 7.116948 CGTTGACTGAGAGATAAATGTCTGTTT 59.883 37.037 0.00 0.00 29.64 2.83
481 1550 7.895975 TGACTGAGAGATAAATGTCTGTTTG 57.104 36.000 0.00 0.00 29.64 2.93
482 1551 7.670364 TGACTGAGAGATAAATGTCTGTTTGA 58.330 34.615 0.00 0.00 29.64 2.69
483 1552 8.150296 TGACTGAGAGATAAATGTCTGTTTGAA 58.850 33.333 0.00 0.00 29.64 2.69
484 1553 9.160496 GACTGAGAGATAAATGTCTGTTTGAAT 57.840 33.333 0.00 0.00 29.64 2.57
485 1554 8.944029 ACTGAGAGATAAATGTCTGTTTGAATG 58.056 33.333 0.00 0.00 29.64 2.67
486 1555 8.272545 TGAGAGATAAATGTCTGTTTGAATGG 57.727 34.615 0.00 0.00 29.64 3.16
487 1556 7.093322 AGAGATAAATGTCTGTTTGAATGGC 57.907 36.000 0.00 0.00 0.00 4.40
488 1557 6.888632 AGAGATAAATGTCTGTTTGAATGGCT 59.111 34.615 0.00 0.00 0.00 4.75
489 1558 7.395489 AGAGATAAATGTCTGTTTGAATGGCTT 59.605 33.333 0.00 0.00 0.00 4.35
490 1559 7.899973 AGATAAATGTCTGTTTGAATGGCTTT 58.100 30.769 0.00 0.00 0.00 3.51
491 1560 8.031277 AGATAAATGTCTGTTTGAATGGCTTTC 58.969 33.333 6.20 6.20 34.72 2.62
492 1561 5.534207 AATGTCTGTTTGAATGGCTTTCA 57.466 34.783 11.38 11.38 42.62 2.69
501 1570 5.404466 TTGAATGGCTTTCAACCTATTGG 57.596 39.130 20.71 0.00 46.80 3.16
502 1571 3.195396 TGAATGGCTTTCAACCTATTGGC 59.805 43.478 12.84 0.00 41.38 4.52
503 1572 2.300956 TGGCTTTCAACCTATTGGCA 57.699 45.000 0.00 0.00 36.39 4.92
504 1573 1.892474 TGGCTTTCAACCTATTGGCAC 59.108 47.619 0.00 0.00 36.39 5.01
505 1574 1.135402 GGCTTTCAACCTATTGGCACG 60.135 52.381 0.00 0.00 36.39 5.34
506 1575 1.732405 GCTTTCAACCTATTGGCACGC 60.732 52.381 0.00 0.00 36.39 5.34
507 1576 0.885196 TTTCAACCTATTGGCACGCC 59.115 50.000 0.00 0.00 36.39 5.68
508 1577 0.963355 TTCAACCTATTGGCACGCCC 60.963 55.000 5.42 0.00 36.39 6.13
509 1578 1.677300 CAACCTATTGGCACGCCCA 60.677 57.895 5.42 0.00 43.51 5.36
510 1579 1.037030 CAACCTATTGGCACGCCCAT 61.037 55.000 5.42 2.40 44.89 4.00
511 1580 0.751643 AACCTATTGGCACGCCCATC 60.752 55.000 5.42 0.00 44.89 3.51
512 1581 1.898574 CCTATTGGCACGCCCATCC 60.899 63.158 5.42 0.00 44.89 3.51
513 1582 1.898574 CTATTGGCACGCCCATCCC 60.899 63.158 5.42 0.00 44.89 3.85
514 1583 2.623094 CTATTGGCACGCCCATCCCA 62.623 60.000 5.42 0.00 44.89 4.37
515 1584 2.902423 TATTGGCACGCCCATCCCAC 62.902 60.000 5.42 0.00 44.89 4.61
522 1591 3.717294 GCCCATCCCACCACGACT 61.717 66.667 0.00 0.00 0.00 4.18
523 1592 2.584608 CCCATCCCACCACGACTC 59.415 66.667 0.00 0.00 0.00 3.36
524 1593 1.990060 CCCATCCCACCACGACTCT 60.990 63.158 0.00 0.00 0.00 3.24
525 1594 1.517832 CCATCCCACCACGACTCTC 59.482 63.158 0.00 0.00 0.00 3.20
526 1595 0.972983 CCATCCCACCACGACTCTCT 60.973 60.000 0.00 0.00 0.00 3.10
527 1596 0.457851 CATCCCACCACGACTCTCTC 59.542 60.000 0.00 0.00 0.00 3.20
528 1597 0.684805 ATCCCACCACGACTCTCTCC 60.685 60.000 0.00 0.00 0.00 3.71
529 1598 1.606601 CCCACCACGACTCTCTCCA 60.607 63.158 0.00 0.00 0.00 3.86
530 1599 0.972983 CCCACCACGACTCTCTCCAT 60.973 60.000 0.00 0.00 0.00 3.41
531 1600 0.457851 CCACCACGACTCTCTCCATC 59.542 60.000 0.00 0.00 0.00 3.51
532 1601 1.468985 CACCACGACTCTCTCCATCT 58.531 55.000 0.00 0.00 0.00 2.90
533 1602 2.644676 CACCACGACTCTCTCCATCTA 58.355 52.381 0.00 0.00 0.00 1.98
534 1603 3.218453 CACCACGACTCTCTCCATCTAT 58.782 50.000 0.00 0.00 0.00 1.98
535 1604 3.634448 CACCACGACTCTCTCCATCTATT 59.366 47.826 0.00 0.00 0.00 1.73
536 1605 3.886505 ACCACGACTCTCTCCATCTATTC 59.113 47.826 0.00 0.00 0.00 1.75
537 1606 4.141287 CCACGACTCTCTCCATCTATTCT 58.859 47.826 0.00 0.00 0.00 2.40
538 1607 5.163184 ACCACGACTCTCTCCATCTATTCTA 60.163 44.000 0.00 0.00 0.00 2.10
539 1608 5.765677 CCACGACTCTCTCCATCTATTCTAA 59.234 44.000 0.00 0.00 0.00 2.10
540 1609 6.293735 CCACGACTCTCTCCATCTATTCTAAC 60.294 46.154 0.00 0.00 0.00 2.34
541 1610 5.467399 ACGACTCTCTCCATCTATTCTAACG 59.533 44.000 0.00 0.00 0.00 3.18
542 1611 5.615984 CGACTCTCTCCATCTATTCTAACGC 60.616 48.000 0.00 0.00 0.00 4.84
543 1612 4.521256 ACTCTCTCCATCTATTCTAACGCC 59.479 45.833 0.00 0.00 0.00 5.68
544 1613 4.470602 TCTCTCCATCTATTCTAACGCCA 58.529 43.478 0.00 0.00 0.00 5.69
545 1614 4.893524 TCTCTCCATCTATTCTAACGCCAA 59.106 41.667 0.00 0.00 0.00 4.52
546 1615 5.362717 TCTCTCCATCTATTCTAACGCCAAA 59.637 40.000 0.00 0.00 0.00 3.28
547 1616 6.042093 TCTCTCCATCTATTCTAACGCCAAAT 59.958 38.462 0.00 0.00 0.00 2.32
548 1617 6.223852 TCTCCATCTATTCTAACGCCAAATC 58.776 40.000 0.00 0.00 0.00 2.17
549 1618 5.924356 TCCATCTATTCTAACGCCAAATCA 58.076 37.500 0.00 0.00 0.00 2.57
550 1619 6.533730 TCCATCTATTCTAACGCCAAATCAT 58.466 36.000 0.00 0.00 0.00 2.45
551 1620 6.427853 TCCATCTATTCTAACGCCAAATCATG 59.572 38.462 0.00 0.00 0.00 3.07
562 1631 2.380941 CCAAATCATGGGCAGATCACA 58.619 47.619 0.00 0.00 46.27 3.58
563 1632 2.361119 CCAAATCATGGGCAGATCACAG 59.639 50.000 0.00 0.00 46.27 3.66
564 1633 2.359981 AATCATGGGCAGATCACAGG 57.640 50.000 0.00 0.00 0.00 4.00
565 1634 1.219773 ATCATGGGCAGATCACAGGT 58.780 50.000 0.00 0.00 0.00 4.00
566 1635 0.543277 TCATGGGCAGATCACAGGTC 59.457 55.000 0.00 0.00 0.00 3.85
567 1636 0.812811 CATGGGCAGATCACAGGTCG 60.813 60.000 0.00 0.00 0.00 4.79
568 1637 0.977627 ATGGGCAGATCACAGGTCGA 60.978 55.000 0.00 0.00 0.00 4.20
569 1638 1.153549 GGGCAGATCACAGGTCGAC 60.154 63.158 7.13 7.13 0.00 4.20
570 1639 1.591703 GGCAGATCACAGGTCGACA 59.408 57.895 18.91 0.00 0.00 4.35
571 1640 0.037326 GGCAGATCACAGGTCGACAA 60.037 55.000 18.91 0.00 0.00 3.18
572 1641 1.608025 GGCAGATCACAGGTCGACAAA 60.608 52.381 18.91 0.00 0.00 2.83
573 1642 2.143122 GCAGATCACAGGTCGACAAAA 58.857 47.619 18.91 0.00 0.00 2.44
574 1643 2.096218 GCAGATCACAGGTCGACAAAAC 60.096 50.000 18.91 0.00 0.00 2.43
575 1644 2.480419 CAGATCACAGGTCGACAAAACC 59.520 50.000 18.91 0.00 37.03 3.27
576 1645 2.104111 AGATCACAGGTCGACAAAACCA 59.896 45.455 18.91 0.00 39.39 3.67
577 1646 1.948104 TCACAGGTCGACAAAACCAG 58.052 50.000 18.91 0.00 39.39 4.00
578 1647 0.307760 CACAGGTCGACAAAACCAGC 59.692 55.000 18.91 0.00 39.39 4.85
579 1648 1.157870 ACAGGTCGACAAAACCAGCG 61.158 55.000 18.91 0.00 39.39 5.18
580 1649 2.251371 GGTCGACAAAACCAGCGC 59.749 61.111 18.91 0.00 36.75 5.92
581 1650 2.251371 GTCGACAAAACCAGCGCC 59.749 61.111 11.55 0.00 0.00 6.53
582 1651 2.203084 TCGACAAAACCAGCGCCA 60.203 55.556 2.29 0.00 0.00 5.69
583 1652 1.820056 TCGACAAAACCAGCGCCAA 60.820 52.632 2.29 0.00 0.00 4.52
584 1653 1.169661 TCGACAAAACCAGCGCCAAT 61.170 50.000 2.29 0.00 0.00 3.16
585 1654 0.318614 CGACAAAACCAGCGCCAATT 60.319 50.000 2.29 0.00 0.00 2.32
586 1655 1.864565 GACAAAACCAGCGCCAATTT 58.135 45.000 2.29 0.00 0.00 1.82
587 1656 2.209273 GACAAAACCAGCGCCAATTTT 58.791 42.857 2.29 5.47 0.00 1.82
588 1657 1.939255 ACAAAACCAGCGCCAATTTTG 59.061 42.857 26.38 26.38 44.11 2.44
589 1658 1.939255 CAAAACCAGCGCCAATTTTGT 59.061 42.857 22.68 0.00 37.30 2.83
590 1659 1.580815 AAACCAGCGCCAATTTTGTG 58.419 45.000 2.29 0.00 0.00 3.33
591 1660 0.249826 AACCAGCGCCAATTTTGTGG 60.250 50.000 2.29 4.92 42.05 4.17
597 1666 4.699626 CCAATTTTGTGGCTGCCC 57.300 55.556 17.53 8.23 0.00 5.36
598 1667 1.003476 CCAATTTTGTGGCTGCCCC 60.003 57.895 17.53 4.89 0.00 5.80
599 1668 1.482748 CCAATTTTGTGGCTGCCCCT 61.483 55.000 17.53 0.00 0.00 4.79
600 1669 0.320946 CAATTTTGTGGCTGCCCCTG 60.321 55.000 17.53 0.00 0.00 4.45
601 1670 0.471591 AATTTTGTGGCTGCCCCTGA 60.472 50.000 17.53 0.00 0.00 3.86
602 1671 0.252375 ATTTTGTGGCTGCCCCTGAT 60.252 50.000 17.53 1.03 0.00 2.90
603 1672 0.471591 TTTTGTGGCTGCCCCTGATT 60.472 50.000 17.53 0.00 0.00 2.57
604 1673 0.471591 TTTGTGGCTGCCCCTGATTT 60.472 50.000 17.53 0.00 0.00 2.17
605 1674 1.186917 TTGTGGCTGCCCCTGATTTG 61.187 55.000 17.53 0.00 0.00 2.32
606 1675 2.037687 TGGCTGCCCCTGATTTGG 59.962 61.111 17.53 0.00 0.00 3.28
607 1676 2.037847 GGCTGCCCCTGATTTGGT 59.962 61.111 7.66 0.00 0.00 3.67
608 1677 2.054453 GGCTGCCCCTGATTTGGTC 61.054 63.158 7.66 0.00 0.00 4.02
609 1678 1.304381 GCTGCCCCTGATTTGGTCA 60.304 57.895 0.00 0.00 35.05 4.02
616 1685 2.361104 TGATTTGGTCAGGCGGGC 60.361 61.111 0.00 0.00 31.80 6.13
617 1686 2.361104 GATTTGGTCAGGCGGGCA 60.361 61.111 3.78 0.00 0.00 5.36
618 1687 1.754234 GATTTGGTCAGGCGGGCAT 60.754 57.895 3.78 0.00 0.00 4.40
619 1688 2.008268 GATTTGGTCAGGCGGGCATG 62.008 60.000 3.78 0.00 0.00 4.06
620 1689 4.738998 TTGGTCAGGCGGGCATGG 62.739 66.667 5.42 0.00 0.00 3.66
628 1697 3.830192 GCGGGCATGGGCAAGAAG 61.830 66.667 0.00 0.00 43.71 2.85
629 1698 3.830192 CGGGCATGGGCAAGAAGC 61.830 66.667 0.00 0.00 43.71 3.86
645 1714 4.699626 GCAAACAGCCCCCAAATG 57.300 55.556 0.00 0.00 37.23 2.32
678 2013 9.601971 TTCTCGTGTTTATTTACTTATGTTTGC 57.398 29.630 0.00 0.00 0.00 3.68
702 2038 4.406456 AGAAAAATGGGTGTGTATGAGCA 58.594 39.130 0.00 0.00 0.00 4.26
728 2064 7.039504 AGTGAATTTGGCATGTCTTCTGTAAAT 60.040 33.333 0.00 0.00 0.00 1.40
731 2067 4.439305 TGGCATGTCTTCTGTAAATTGC 57.561 40.909 0.00 0.00 0.00 3.56
740 2076 4.218417 TCTTCTGTAAATTGCTTTCTGGCC 59.782 41.667 0.00 0.00 0.00 5.36
745 2081 4.527816 TGTAAATTGCTTTCTGGCCAATCT 59.472 37.500 7.01 0.00 0.00 2.40
747 2083 3.604875 ATTGCTTTCTGGCCAATCTTG 57.395 42.857 7.01 0.00 0.00 3.02
765 2101 1.109609 TGCCAATTCAGCACAACACA 58.890 45.000 0.00 0.00 34.69 3.72
945 2287 1.600916 GACCACAAGCCCCACACTC 60.601 63.158 0.00 0.00 0.00 3.51
983 2330 2.044848 ACACCACGGCACCACAAA 60.045 55.556 0.00 0.00 0.00 2.83
1413 2763 3.130160 GCGTACTCCGTCGTCCCT 61.130 66.667 0.00 0.00 39.32 4.20
1659 3012 0.912487 TGCCCCGTATTGTCCTTCCT 60.912 55.000 0.00 0.00 0.00 3.36
1660 3013 0.255033 GCCCCGTATTGTCCTTCCTT 59.745 55.000 0.00 0.00 0.00 3.36
1661 3014 1.340697 GCCCCGTATTGTCCTTCCTTT 60.341 52.381 0.00 0.00 0.00 3.11
1662 3015 2.882643 GCCCCGTATTGTCCTTCCTTTT 60.883 50.000 0.00 0.00 0.00 2.27
1663 3016 3.014623 CCCCGTATTGTCCTTCCTTTTC 58.985 50.000 0.00 0.00 0.00 2.29
1664 3017 3.014623 CCCGTATTGTCCTTCCTTTTCC 58.985 50.000 0.00 0.00 0.00 3.13
1665 3018 3.308188 CCCGTATTGTCCTTCCTTTTCCT 60.308 47.826 0.00 0.00 0.00 3.36
1666 3019 4.332828 CCGTATTGTCCTTCCTTTTCCTT 58.667 43.478 0.00 0.00 0.00 3.36
1701 3055 1.816224 GTGTGTGGGTTGTGTTGAGTT 59.184 47.619 0.00 0.00 0.00 3.01
1742 3100 0.680601 TGGTGCCCGATCGTAGTACA 60.681 55.000 19.80 9.56 0.00 2.90
1743 3101 0.030369 GGTGCCCGATCGTAGTACAG 59.970 60.000 19.80 2.83 0.00 2.74
1780 3138 0.031857 TGTGCTTGCGAATTTGGTGG 59.968 50.000 0.00 0.00 0.00 4.61
1882 3250 6.422223 GGCACGATTGATTGATTTAGTACTG 58.578 40.000 5.39 0.00 0.00 2.74
1906 3274 2.556622 AGGCCAGTTGTTGATTAAACGG 59.443 45.455 5.01 0.00 42.10 4.44
1907 3275 2.295070 GGCCAGTTGTTGATTAAACGGT 59.705 45.455 0.00 0.00 42.10 4.83
2048 3423 4.088213 GTGCTACGAGTACGCTATATTTGC 59.912 45.833 0.00 0.00 43.96 3.68
2068 3443 4.465921 TGCGATTTATTAGATTGCATGCG 58.534 39.130 14.09 0.00 38.62 4.73
2098 3473 1.227853 AAGTGGGCCACGACTGTTC 60.228 57.895 29.76 4.59 39.64 3.18
2138 3513 9.809096 ATTATCGAGGACATGTTGCTATATTAG 57.191 33.333 0.00 0.00 0.00 1.73
2139 3514 6.025749 TCGAGGACATGTTGCTATATTAGG 57.974 41.667 0.00 0.00 0.00 2.69
2140 3515 5.538813 TCGAGGACATGTTGCTATATTAGGT 59.461 40.000 0.00 0.00 0.00 3.08
2141 3516 5.635280 CGAGGACATGTTGCTATATTAGGTG 59.365 44.000 0.00 0.00 0.00 4.00
2142 3517 5.869579 AGGACATGTTGCTATATTAGGTGG 58.130 41.667 0.00 0.00 0.00 4.61
2143 3518 5.369699 AGGACATGTTGCTATATTAGGTGGT 59.630 40.000 0.00 0.00 0.00 4.16
2144 3519 5.470098 GGACATGTTGCTATATTAGGTGGTG 59.530 44.000 0.00 0.00 0.00 4.17
2145 3520 6.001449 ACATGTTGCTATATTAGGTGGTGT 57.999 37.500 0.00 0.00 0.00 4.16
2146 3521 6.423182 ACATGTTGCTATATTAGGTGGTGTT 58.577 36.000 0.00 0.00 0.00 3.32
2147 3522 6.889722 ACATGTTGCTATATTAGGTGGTGTTT 59.110 34.615 0.00 0.00 0.00 2.83
2148 3523 6.751514 TGTTGCTATATTAGGTGGTGTTTG 57.248 37.500 0.00 0.00 0.00 2.93
2149 3524 5.650266 TGTTGCTATATTAGGTGGTGTTTGG 59.350 40.000 0.00 0.00 0.00 3.28
2150 3525 5.444744 TGCTATATTAGGTGGTGTTTGGT 57.555 39.130 0.00 0.00 0.00 3.67
2151 3526 5.822204 TGCTATATTAGGTGGTGTTTGGTT 58.178 37.500 0.00 0.00 0.00 3.67
2152 3527 5.883673 TGCTATATTAGGTGGTGTTTGGTTC 59.116 40.000 0.00 0.00 0.00 3.62
2153 3528 6.120220 GCTATATTAGGTGGTGTTTGGTTCT 58.880 40.000 0.00 0.00 0.00 3.01
2154 3529 6.260271 GCTATATTAGGTGGTGTTTGGTTCTC 59.740 42.308 0.00 0.00 0.00 2.87
2155 3530 4.724279 ATTAGGTGGTGTTTGGTTCTCT 57.276 40.909 0.00 0.00 0.00 3.10
2156 3531 5.836024 ATTAGGTGGTGTTTGGTTCTCTA 57.164 39.130 0.00 0.00 0.00 2.43
2157 3532 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
2158 3533 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
2159 3534 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
2160 3535 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
2161 3536 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
2162 3537 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
2163 3538 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
2164 3539 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
2165 3540 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
2166 3541 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
2190 3565 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
2192 3567 7.812690 TTTTCTAGTCCCAACTAAAAAGTCC 57.187 36.000 0.00 0.00 37.53 3.85
2193 3568 5.494390 TCTAGTCCCAACTAAAAAGTCCC 57.506 43.478 0.00 0.00 37.53 4.46
2194 3569 5.160386 TCTAGTCCCAACTAAAAAGTCCCT 58.840 41.667 0.00 0.00 37.53 4.20
2195 3570 6.325352 TCTAGTCCCAACTAAAAAGTCCCTA 58.675 40.000 0.00 0.00 37.53 3.53
2196 3571 5.500546 AGTCCCAACTAAAAAGTCCCTAG 57.499 43.478 0.00 0.00 32.59 3.02
2197 3572 4.912133 AGTCCCAACTAAAAAGTCCCTAGT 59.088 41.667 0.00 0.00 32.59 2.57
2198 3573 5.012871 AGTCCCAACTAAAAAGTCCCTAGTC 59.987 44.000 0.00 0.00 32.59 2.59
2199 3574 4.287845 TCCCAACTAAAAAGTCCCTAGTCC 59.712 45.833 0.00 0.00 0.00 3.85
2200 3575 4.567116 CCCAACTAAAAAGTCCCTAGTCCC 60.567 50.000 0.00 0.00 0.00 4.46
2201 3576 4.288887 CCAACTAAAAAGTCCCTAGTCCCT 59.711 45.833 0.00 0.00 0.00 4.20
2202 3577 5.486419 CCAACTAAAAAGTCCCTAGTCCCTA 59.514 44.000 0.00 0.00 0.00 3.53
2203 3578 6.013119 CCAACTAAAAAGTCCCTAGTCCCTAA 60.013 42.308 0.00 0.00 0.00 2.69
2204 3579 7.455891 CAACTAAAAAGTCCCTAGTCCCTAAA 58.544 38.462 0.00 0.00 0.00 1.85
2205 3580 7.637548 ACTAAAAAGTCCCTAGTCCCTAAAA 57.362 36.000 0.00 0.00 0.00 1.52
2206 3581 8.049165 ACTAAAAAGTCCCTAGTCCCTAAAAA 57.951 34.615 0.00 0.00 0.00 1.94
2227 3602 6.790232 AAAATCCCTCTCTGTTTGTTTTCA 57.210 33.333 0.00 0.00 0.00 2.69
2228 3603 6.396829 AAATCCCTCTCTGTTTGTTTTCAG 57.603 37.500 0.00 0.00 0.00 3.02
2229 3604 4.771114 TCCCTCTCTGTTTGTTTTCAGA 57.229 40.909 0.00 0.00 38.20 3.27
2240 3615 9.010029 TCTGTTTGTTTTCAGAGACTAAAAAGT 57.990 29.630 0.00 0.00 36.04 2.66
2241 3616 9.278734 CTGTTTGTTTTCAGAGACTAAAAAGTC 57.721 33.333 0.00 0.00 39.00 3.01
2242 3617 8.241367 TGTTTGTTTTCAGAGACTAAAAAGTCC 58.759 33.333 2.00 0.00 39.50 3.85
2243 3618 8.459635 GTTTGTTTTCAGAGACTAAAAAGTCCT 58.540 33.333 2.00 0.00 39.50 3.85
2244 3619 8.575649 TTGTTTTCAGAGACTAAAAAGTCCTT 57.424 30.769 2.00 0.00 39.50 3.36
2245 3620 9.675464 TTGTTTTCAGAGACTAAAAAGTCCTTA 57.325 29.630 2.00 0.00 39.50 2.69
2246 3621 9.326413 TGTTTTCAGAGACTAAAAAGTCCTTAG 57.674 33.333 2.00 0.00 39.50 2.18
2247 3622 9.327628 GTTTTCAGAGACTAAAAAGTCCTTAGT 57.672 33.333 2.00 0.00 41.28 2.24
2254 3629 6.124316 ACTAAAAAGTCCTTAGTCCCTTCC 57.876 41.667 0.00 0.00 35.16 3.46
2255 3630 5.850583 ACTAAAAAGTCCTTAGTCCCTTCCT 59.149 40.000 0.00 0.00 35.16 3.36
2256 3631 7.021251 ACTAAAAAGTCCTTAGTCCCTTCCTA 58.979 38.462 0.00 0.00 35.16 2.94
2257 3632 6.775234 AAAAAGTCCTTAGTCCCTTCCTAA 57.225 37.500 0.00 0.00 0.00 2.69
2258 3633 6.775234 AAAAGTCCTTAGTCCCTTCCTAAA 57.225 37.500 0.00 0.00 0.00 1.85
2259 3634 6.375830 AAAGTCCTTAGTCCCTTCCTAAAG 57.624 41.667 0.00 0.00 0.00 1.85
2284 3659 7.119709 GTTATTAAATAACCATGTTGCCCCT 57.880 36.000 0.00 0.00 39.30 4.79
2285 3660 8.240267 GTTATTAAATAACCATGTTGCCCCTA 57.760 34.615 0.00 0.00 39.30 3.53
2286 3661 8.866093 GTTATTAAATAACCATGTTGCCCCTAT 58.134 33.333 0.00 0.00 39.30 2.57
2287 3662 7.929348 ATTAAATAACCATGTTGCCCCTATT 57.071 32.000 0.00 0.00 0.00 1.73
2289 3664 9.614269 ATTAAATAACCATGTTGCCCCTATTAT 57.386 29.630 0.00 0.00 0.00 1.28
2293 3668 9.920946 AATAACCATGTTGCCCCTATTATATAG 57.079 33.333 0.00 0.00 0.00 1.31
2294 3669 7.582909 AACCATGTTGCCCCTATTATATAGA 57.417 36.000 0.00 0.00 0.00 1.98
2295 3670 7.582909 ACCATGTTGCCCCTATTATATAGAA 57.417 36.000 0.00 0.00 0.00 2.10
2296 3671 7.995663 ACCATGTTGCCCCTATTATATAGAAA 58.004 34.615 0.00 0.00 0.00 2.52
2297 3672 8.452868 ACCATGTTGCCCCTATTATATAGAAAA 58.547 33.333 0.00 0.00 0.00 2.29
2298 3673 9.308000 CCATGTTGCCCCTATTATATAGAAAAA 57.692 33.333 0.00 0.00 0.00 1.94
2322 3697 8.606040 AATAAAAATCAAACAACACCATGAGG 57.394 30.769 0.00 0.00 42.21 3.86
2342 3717 3.142838 GCGGGCCAATGAGTGCAT 61.143 61.111 4.39 0.00 35.92 3.96
2343 3718 2.802792 CGGGCCAATGAGTGCATG 59.197 61.111 4.39 0.00 34.26 4.06
2344 3719 2.777972 CGGGCCAATGAGTGCATGG 61.778 63.158 4.39 0.00 34.26 3.66
2345 3720 1.380246 GGGCCAATGAGTGCATGGA 60.380 57.895 4.39 0.00 34.26 3.41
2346 3721 1.389609 GGGCCAATGAGTGCATGGAG 61.390 60.000 4.39 0.00 34.26 3.86
2347 3722 1.389609 GGCCAATGAGTGCATGGAGG 61.390 60.000 7.48 0.00 34.26 4.30
2348 3723 1.389609 GCCAATGAGTGCATGGAGGG 61.390 60.000 7.48 0.00 34.26 4.30
2349 3724 0.754217 CCAATGAGTGCATGGAGGGG 60.754 60.000 0.00 0.00 34.26 4.79
2350 3725 1.076485 AATGAGTGCATGGAGGGGC 60.076 57.895 0.00 0.00 34.26 5.80
2351 3726 1.866483 AATGAGTGCATGGAGGGGCA 61.866 55.000 0.00 0.00 37.77 5.36
2352 3727 1.652187 ATGAGTGCATGGAGGGGCAT 61.652 55.000 0.00 0.00 42.75 4.40
2353 3728 1.076485 GAGTGCATGGAGGGGCATT 60.076 57.895 0.00 0.00 42.75 3.56
2354 3729 1.380785 AGTGCATGGAGGGGCATTG 60.381 57.895 0.00 0.00 42.75 2.82
2355 3730 1.683365 GTGCATGGAGGGGCATTGT 60.683 57.895 0.00 0.00 42.75 2.71
2356 3731 1.078891 TGCATGGAGGGGCATTGTT 59.921 52.632 0.00 0.00 34.58 2.83
2357 3732 1.259142 TGCATGGAGGGGCATTGTTG 61.259 55.000 0.00 0.00 34.58 3.33
2358 3733 1.963464 GCATGGAGGGGCATTGTTGG 61.963 60.000 0.00 0.00 0.00 3.77
2359 3734 0.324552 CATGGAGGGGCATTGTTGGA 60.325 55.000 0.00 0.00 0.00 3.53
2360 3735 0.413037 ATGGAGGGGCATTGTTGGAA 59.587 50.000 0.00 0.00 0.00 3.53
2361 3736 0.189574 TGGAGGGGCATTGTTGGAAA 59.810 50.000 0.00 0.00 0.00 3.13
2362 3737 1.347062 GGAGGGGCATTGTTGGAAAA 58.653 50.000 0.00 0.00 0.00 2.29
2363 3738 1.276138 GGAGGGGCATTGTTGGAAAAG 59.724 52.381 0.00 0.00 0.00 2.27
2364 3739 1.970640 GAGGGGCATTGTTGGAAAAGT 59.029 47.619 0.00 0.00 0.00 2.66
2365 3740 1.970640 AGGGGCATTGTTGGAAAAGTC 59.029 47.619 0.00 0.00 0.00 3.01
2366 3741 1.001974 GGGGCATTGTTGGAAAAGTCC 59.998 52.381 0.00 0.00 45.21 3.85
2367 3742 1.001974 GGGCATTGTTGGAAAAGTCCC 59.998 52.381 0.00 0.00 44.23 4.46
2368 3743 1.691434 GGCATTGTTGGAAAAGTCCCA 59.309 47.619 0.00 0.00 44.23 4.37
2369 3744 2.103941 GGCATTGTTGGAAAAGTCCCAA 59.896 45.455 0.00 0.00 44.23 4.12
2370 3745 3.432890 GGCATTGTTGGAAAAGTCCCAAA 60.433 43.478 0.00 0.00 44.41 3.28
2371 3746 4.195416 GCATTGTTGGAAAAGTCCCAAAA 58.805 39.130 0.00 0.00 44.41 2.44
2372 3747 4.637977 GCATTGTTGGAAAAGTCCCAAAAA 59.362 37.500 0.00 0.00 44.41 1.94
2373 3748 5.220835 GCATTGTTGGAAAAGTCCCAAAAAG 60.221 40.000 0.00 0.00 42.35 2.27
2374 3749 5.746990 TTGTTGGAAAAGTCCCAAAAAGA 57.253 34.783 0.00 0.00 44.41 2.52
2375 3750 5.079689 TGTTGGAAAAGTCCCAAAAAGAC 57.920 39.130 0.00 0.00 44.41 3.01
2376 3751 4.775253 TGTTGGAAAAGTCCCAAAAAGACT 59.225 37.500 0.00 0.00 46.50 3.24
2377 3752 5.105513 TGTTGGAAAAGTCCCAAAAAGACTC 60.106 40.000 0.00 0.00 43.77 3.36
2378 3753 4.867086 TGGAAAAGTCCCAAAAAGACTCT 58.133 39.130 0.00 0.00 43.77 3.24
2379 3754 4.887655 TGGAAAAGTCCCAAAAAGACTCTC 59.112 41.667 0.00 0.00 43.77 3.20
2380 3755 4.278669 GGAAAAGTCCCAAAAAGACTCTCC 59.721 45.833 0.00 0.00 43.77 3.71
2381 3756 4.797912 AAAGTCCCAAAAAGACTCTCCT 57.202 40.909 0.00 0.00 43.77 3.69
2382 3757 4.797912 AAGTCCCAAAAAGACTCTCCTT 57.202 40.909 0.00 0.00 43.77 3.36
2383 3758 5.906772 AAGTCCCAAAAAGACTCTCCTTA 57.093 39.130 0.00 0.00 43.77 2.69
2384 3759 5.906772 AGTCCCAAAAAGACTCTCCTTAA 57.093 39.130 0.00 0.00 40.61 1.85
2385 3760 5.870706 AGTCCCAAAAAGACTCTCCTTAAG 58.129 41.667 0.00 0.00 40.61 1.85
2386 3761 5.607171 AGTCCCAAAAAGACTCTCCTTAAGA 59.393 40.000 3.36 0.00 40.61 2.10
2401 3776 9.801873 CTCTCCTTAAGAGTCTTCTTCATTTAG 57.198 37.037 9.12 0.00 45.61 1.85
2402 3777 9.315363 TCTCCTTAAGAGTCTTCTTCATTTAGT 57.685 33.333 9.12 0.00 42.60 2.24
2403 3778 9.581099 CTCCTTAAGAGTCTTCTTCATTTAGTC 57.419 37.037 9.12 0.00 42.60 2.59
2404 3779 8.532819 TCCTTAAGAGTCTTCTTCATTTAGTCC 58.467 37.037 9.12 0.00 42.60 3.85
2405 3780 7.766738 CCTTAAGAGTCTTCTTCATTTAGTCCC 59.233 40.741 9.12 0.00 42.60 4.46
2406 3781 6.688073 AAGAGTCTTCTTCATTTAGTCCCA 57.312 37.500 0.00 0.00 39.46 4.37
2407 3782 6.688073 AGAGTCTTCTTCATTTAGTCCCAA 57.312 37.500 0.00 0.00 0.00 4.12
2408 3783 7.079451 AGAGTCTTCTTCATTTAGTCCCAAA 57.921 36.000 0.00 0.00 0.00 3.28
2409 3784 7.694093 AGAGTCTTCTTCATTTAGTCCCAAAT 58.306 34.615 0.00 0.00 0.00 2.32
2410 3785 7.609532 AGAGTCTTCTTCATTTAGTCCCAAATG 59.390 37.037 2.83 2.83 44.00 2.32
2411 3786 6.151817 AGTCTTCTTCATTTAGTCCCAAATGC 59.848 38.462 4.14 0.00 42.89 3.56
2412 3787 5.418840 TCTTCTTCATTTAGTCCCAAATGCC 59.581 40.000 4.14 0.00 42.89 4.40
2413 3788 4.934356 TCTTCATTTAGTCCCAAATGCCT 58.066 39.130 4.14 0.00 42.89 4.75
2414 3789 6.073447 TCTTCATTTAGTCCCAAATGCCTA 57.927 37.500 4.14 0.00 42.89 3.93
2415 3790 6.122277 TCTTCATTTAGTCCCAAATGCCTAG 58.878 40.000 4.14 0.00 42.89 3.02
2416 3791 5.450818 TCATTTAGTCCCAAATGCCTAGT 57.549 39.130 4.14 0.00 42.89 2.57
2417 3792 5.826643 TCATTTAGTCCCAAATGCCTAGTT 58.173 37.500 4.14 0.00 42.89 2.24
2418 3793 6.252995 TCATTTAGTCCCAAATGCCTAGTTT 58.747 36.000 4.14 0.00 42.89 2.66
2419 3794 7.406916 TCATTTAGTCCCAAATGCCTAGTTTA 58.593 34.615 4.14 0.00 42.89 2.01
2420 3795 7.556275 TCATTTAGTCCCAAATGCCTAGTTTAG 59.444 37.037 4.14 0.00 42.89 1.85
2421 3796 4.929146 AGTCCCAAATGCCTAGTTTAGT 57.071 40.909 0.00 0.00 0.00 2.24
2422 3797 4.844884 AGTCCCAAATGCCTAGTTTAGTC 58.155 43.478 0.00 0.00 0.00 2.59
2423 3798 3.945921 GTCCCAAATGCCTAGTTTAGTCC 59.054 47.826 0.00 0.00 0.00 3.85
2424 3799 3.053917 TCCCAAATGCCTAGTTTAGTCCC 60.054 47.826 0.00 0.00 0.00 4.46
2425 3800 3.053619 CCCAAATGCCTAGTTTAGTCCCT 60.054 47.826 0.00 0.00 0.00 4.20
2426 3801 4.165372 CCCAAATGCCTAGTTTAGTCCCTA 59.835 45.833 0.00 0.00 0.00 3.53
2427 3802 5.339695 CCCAAATGCCTAGTTTAGTCCCTAA 60.340 44.000 0.00 0.00 0.00 2.69
2428 3803 6.184789 CCAAATGCCTAGTTTAGTCCCTAAA 58.815 40.000 0.00 0.00 34.12 1.85
2429 3804 6.661805 CCAAATGCCTAGTTTAGTCCCTAAAA 59.338 38.462 0.00 0.00 37.62 1.52
2430 3805 7.177744 CCAAATGCCTAGTTTAGTCCCTAAAAA 59.822 37.037 0.00 0.00 37.62 1.94
2431 3806 7.939784 AATGCCTAGTTTAGTCCCTAAAAAG 57.060 36.000 0.00 0.88 37.62 2.27
2432 3807 6.443995 TGCCTAGTTTAGTCCCTAAAAAGT 57.556 37.500 0.00 0.00 37.62 2.66
2433 3808 6.470278 TGCCTAGTTTAGTCCCTAAAAAGTC 58.530 40.000 0.00 0.00 37.62 3.01
2434 3809 5.879223 GCCTAGTTTAGTCCCTAAAAAGTCC 59.121 44.000 0.00 0.00 37.62 3.85
2435 3810 6.413052 CCTAGTTTAGTCCCTAAAAAGTCCC 58.587 44.000 0.00 0.00 37.62 4.46
2436 3811 6.215023 CCTAGTTTAGTCCCTAAAAAGTCCCT 59.785 42.308 0.00 0.00 37.62 4.20
2437 3812 6.124316 AGTTTAGTCCCTAAAAAGTCCCTC 57.876 41.667 0.00 0.00 37.62 4.30
2438 3813 5.013913 AGTTTAGTCCCTAAAAAGTCCCTCC 59.986 44.000 0.00 0.00 37.62 4.30
2439 3814 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
2440 3815 1.065636 GTCCCTAAAAAGTCCCTCCCG 60.066 57.143 0.00 0.00 0.00 5.14
2441 3816 0.989602 CCCTAAAAAGTCCCTCCCGT 59.010 55.000 0.00 0.00 0.00 5.28
2442 3817 1.353358 CCCTAAAAAGTCCCTCCCGTT 59.647 52.381 0.00 0.00 0.00 4.44
2443 3818 2.224942 CCCTAAAAAGTCCCTCCCGTTT 60.225 50.000 0.00 0.00 0.00 3.60
2444 3819 2.817844 CCTAAAAAGTCCCTCCCGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
2445 3820 2.740506 AAAAAGTCCCTCCCGTTTGA 57.259 45.000 0.00 0.00 0.00 2.69
2446 3821 2.971901 AAAAGTCCCTCCCGTTTGAT 57.028 45.000 0.00 0.00 0.00 2.57
2447 3822 4.376225 AAAAAGTCCCTCCCGTTTGATA 57.624 40.909 0.00 0.00 0.00 2.15
2448 3823 4.376225 AAAAGTCCCTCCCGTTTGATAA 57.624 40.909 0.00 0.00 0.00 1.75
2449 3824 4.376225 AAAGTCCCTCCCGTTTGATAAA 57.624 40.909 0.00 0.00 0.00 1.40
2450 3825 4.376225 AAGTCCCTCCCGTTTGATAAAA 57.624 40.909 0.00 0.00 0.00 1.52
2451 3826 4.376225 AGTCCCTCCCGTTTGATAAAAA 57.624 40.909 0.00 0.00 0.00 1.94
2475 3850 7.712204 AAGTCTCTAGAGGGACTTTTTCTAG 57.288 40.000 17.41 0.00 46.55 2.43
2476 3851 6.796648 AGTCTCTAGAGGGACTTTTTCTAGT 58.203 40.000 19.67 0.00 41.55 2.57
2477 3852 6.888088 AGTCTCTAGAGGGACTTTTTCTAGTC 59.112 42.308 19.67 0.00 41.55 2.59
2488 3863 7.797038 GACTTTTTCTAGTCCCTACACAAAA 57.203 36.000 0.00 0.00 38.88 2.44
2489 3864 8.217131 GACTTTTTCTAGTCCCTACACAAAAA 57.783 34.615 0.00 0.00 38.88 1.94
2509 3884 4.465632 AAAGTCCCTGAAAACAAACACC 57.534 40.909 0.00 0.00 0.00 4.16
2510 3885 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
2511 3886 2.024369 AGTCCCTGAAAACAAACACCCT 60.024 45.455 0.00 0.00 0.00 4.34
2512 3887 2.361119 GTCCCTGAAAACAAACACCCTC 59.639 50.000 0.00 0.00 0.00 4.30
2513 3888 2.243736 TCCCTGAAAACAAACACCCTCT 59.756 45.455 0.00 0.00 0.00 3.69
2514 3889 3.031013 CCCTGAAAACAAACACCCTCTT 58.969 45.455 0.00 0.00 0.00 2.85
2515 3890 4.079672 TCCCTGAAAACAAACACCCTCTTA 60.080 41.667 0.00 0.00 0.00 2.10
2516 3891 4.832823 CCCTGAAAACAAACACCCTCTTAT 59.167 41.667 0.00 0.00 0.00 1.73
2517 3892 5.304357 CCCTGAAAACAAACACCCTCTTATT 59.696 40.000 0.00 0.00 0.00 1.40
2518 3893 6.215845 CCTGAAAACAAACACCCTCTTATTG 58.784 40.000 0.00 0.00 0.00 1.90
2519 3894 6.183360 CCTGAAAACAAACACCCTCTTATTGT 60.183 38.462 0.00 0.00 35.86 2.71
2520 3895 6.801575 TGAAAACAAACACCCTCTTATTGTC 58.198 36.000 0.00 0.00 33.39 3.18
2521 3896 6.605594 TGAAAACAAACACCCTCTTATTGTCT 59.394 34.615 0.00 0.00 33.39 3.41
2522 3897 7.123547 TGAAAACAAACACCCTCTTATTGTCTT 59.876 33.333 0.00 0.00 33.39 3.01
2523 3898 6.635030 AACAAACACCCTCTTATTGTCTTC 57.365 37.500 0.00 0.00 33.39 2.87
2524 3899 5.941788 ACAAACACCCTCTTATTGTCTTCT 58.058 37.500 0.00 0.00 28.61 2.85
2525 3900 5.998363 ACAAACACCCTCTTATTGTCTTCTC 59.002 40.000 0.00 0.00 28.61 2.87
2526 3901 6.183361 ACAAACACCCTCTTATTGTCTTCTCT 60.183 38.462 0.00 0.00 28.61 3.10
2527 3902 6.441088 AACACCCTCTTATTGTCTTCTCTT 57.559 37.500 0.00 0.00 0.00 2.85
2528 3903 6.441088 ACACCCTCTTATTGTCTTCTCTTT 57.559 37.500 0.00 0.00 0.00 2.52
2529 3904 6.842676 ACACCCTCTTATTGTCTTCTCTTTT 58.157 36.000 0.00 0.00 0.00 2.27
2530 3905 7.974504 ACACCCTCTTATTGTCTTCTCTTTTA 58.025 34.615 0.00 0.00 0.00 1.52
2531 3906 8.606830 ACACCCTCTTATTGTCTTCTCTTTTAT 58.393 33.333 0.00 0.00 0.00 1.40
2542 3917 9.725019 TTGTCTTCTCTTTTATAGAATGCTTCA 57.275 29.630 0.00 0.00 32.72 3.02
2543 3918 9.896645 TGTCTTCTCTTTTATAGAATGCTTCAT 57.103 29.630 0.00 0.00 32.72 2.57
2545 3920 9.334947 TCTTCTCTTTTATAGAATGCTTCATGG 57.665 33.333 0.00 0.00 32.72 3.66
2546 3921 9.118300 CTTCTCTTTTATAGAATGCTTCATGGT 57.882 33.333 0.00 0.00 32.72 3.55
2547 3922 9.466497 TTCTCTTTTATAGAATGCTTCATGGTT 57.534 29.630 0.00 0.00 30.91 3.67
2548 3923 9.466497 TCTCTTTTATAGAATGCTTCATGGTTT 57.534 29.630 0.00 0.00 30.91 3.27
2574 3949 9.810545 TTTTAGGGAAGAAACAGTAAACAAATG 57.189 29.630 0.00 0.00 0.00 2.32
2575 3950 8.528044 TTAGGGAAGAAACAGTAAACAAATGT 57.472 30.769 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.238130 GCTAAATGATGTACTCCCTTCGTTTC 60.238 42.308 0.00 0.00 32.87 2.78
1 2 5.585047 GCTAAATGATGTACTCCCTTCGTTT 59.415 40.000 0.00 0.00 34.23 3.60
2 3 5.104900 AGCTAAATGATGTACTCCCTTCGTT 60.105 40.000 0.00 0.00 0.00 3.85
3 4 4.406003 AGCTAAATGATGTACTCCCTTCGT 59.594 41.667 0.00 0.00 0.00 3.85
4 5 4.950050 AGCTAAATGATGTACTCCCTTCG 58.050 43.478 0.00 0.00 0.00 3.79
5 6 7.501844 ACTAAGCTAAATGATGTACTCCCTTC 58.498 38.462 0.00 0.00 0.00 3.46
6 7 7.439108 ACTAAGCTAAATGATGTACTCCCTT 57.561 36.000 0.00 0.00 0.00 3.95
7 8 8.728596 ATACTAAGCTAAATGATGTACTCCCT 57.271 34.615 0.00 0.00 0.00 4.20
37 38 5.909621 TCGCTTTATGTAAGTAGGACTGT 57.090 39.130 0.00 0.00 36.19 3.55
103 104 9.806203 CAATCTGAACATATTTAAAGGCATTGA 57.194 29.630 0.00 0.00 0.00 2.57
106 107 8.537728 TCCAATCTGAACATATTTAAAGGCAT 57.462 30.769 0.00 0.00 0.00 4.40
128 129 6.070656 CCCCTCTATGCTTTTCAAATATCCA 58.929 40.000 0.00 0.00 0.00 3.41
133 134 7.500629 AATTTCCCCTCTATGCTTTTCAAAT 57.499 32.000 0.00 0.00 0.00 2.32
150 151 1.511850 GTGCAGCCACAAAATTTCCC 58.488 50.000 0.00 0.00 41.67 3.97
172 173 3.005539 GGAGGAGAGGTGCTGGCA 61.006 66.667 0.00 0.00 0.00 4.92
214 215 2.203938 ACCGATGGGACTGGTGGT 60.204 61.111 0.00 0.00 33.91 4.16
234 238 2.373540 TCCCGATTTTCCACACTACG 57.626 50.000 0.00 0.00 0.00 3.51
239 243 0.610785 GGCCTTCCCGATTTTCCACA 60.611 55.000 0.00 0.00 0.00 4.17
261 265 3.551485 GCACACAACTTCCACACAAAATC 59.449 43.478 0.00 0.00 0.00 2.17
266 270 1.832883 AAGCACACAACTTCCACACA 58.167 45.000 0.00 0.00 0.00 3.72
267 271 4.364415 TTTAAGCACACAACTTCCACAC 57.636 40.909 0.00 0.00 0.00 3.82
268 272 4.381079 GGTTTTAAGCACACAACTTCCACA 60.381 41.667 0.00 0.00 0.00 4.17
282 1351 2.414138 AGACGCATACACGGTTTTAAGC 59.586 45.455 0.00 0.00 37.37 3.09
283 1352 5.961395 ATAGACGCATACACGGTTTTAAG 57.039 39.130 0.00 0.00 37.37 1.85
291 1360 4.802039 ACCAAACTAATAGACGCATACACG 59.198 41.667 0.00 0.00 39.50 4.49
292 1361 6.091713 ACAACCAAACTAATAGACGCATACAC 59.908 38.462 0.00 0.00 0.00 2.90
296 1365 6.205853 TCAAACAACCAAACTAATAGACGCAT 59.794 34.615 0.00 0.00 0.00 4.73
299 1368 7.857569 TCTTCAAACAACCAAACTAATAGACG 58.142 34.615 0.00 0.00 0.00 4.18
347 1416 6.907741 TGATGTTTGCTTTCATCGTGATTAA 58.092 32.000 9.58 0.00 42.05 1.40
354 1423 3.302434 GCACATGATGTTTGCTTTCATCG 59.698 43.478 0.00 0.00 42.05 3.84
359 1428 1.340889 ACCGCACATGATGTTTGCTTT 59.659 42.857 0.00 0.00 33.90 3.51
375 1444 4.251268 AGAAGTAATCCTTAACACACCGC 58.749 43.478 0.00 0.00 32.03 5.68
392 1461 4.651045 ACAGCCCTTTGATTTTGAAGAAGT 59.349 37.500 0.00 0.00 0.00 3.01
409 1478 1.275856 TGAATGCAATCCAAACAGCCC 59.724 47.619 0.00 0.00 0.00 5.19
410 1479 2.747396 TGAATGCAATCCAAACAGCC 57.253 45.000 0.00 0.00 0.00 4.85
411 1480 2.855963 CGATGAATGCAATCCAAACAGC 59.144 45.455 0.00 0.00 0.00 4.40
412 1481 4.100529 GACGATGAATGCAATCCAAACAG 58.899 43.478 0.00 0.00 0.00 3.16
413 1482 3.758023 AGACGATGAATGCAATCCAAACA 59.242 39.130 0.00 0.00 0.00 2.83
414 1483 4.100529 CAGACGATGAATGCAATCCAAAC 58.899 43.478 0.00 0.00 0.00 2.93
415 1484 3.427909 GCAGACGATGAATGCAATCCAAA 60.428 43.478 0.00 0.00 39.75 3.28
416 1485 2.097954 GCAGACGATGAATGCAATCCAA 59.902 45.455 0.00 0.00 39.75 3.53
417 1486 1.672363 GCAGACGATGAATGCAATCCA 59.328 47.619 0.00 0.00 39.75 3.41
418 1487 1.002033 GGCAGACGATGAATGCAATCC 60.002 52.381 0.00 0.00 41.78 3.01
419 1488 1.672363 TGGCAGACGATGAATGCAATC 59.328 47.619 0.00 0.00 41.78 2.67
420 1489 1.753930 TGGCAGACGATGAATGCAAT 58.246 45.000 0.00 0.00 41.78 3.56
421 1490 1.402613 CATGGCAGACGATGAATGCAA 59.597 47.619 0.00 0.00 41.78 4.08
422 1491 1.018910 CATGGCAGACGATGAATGCA 58.981 50.000 0.00 0.00 41.78 3.96
423 1492 0.317603 GCATGGCAGACGATGAATGC 60.318 55.000 13.27 13.27 40.85 3.56
424 1493 0.309922 GGCATGGCAGACGATGAATG 59.690 55.000 15.47 0.00 0.00 2.67
425 1494 0.107066 TGGCATGGCAGACGATGAAT 60.107 50.000 19.43 0.00 0.00 2.57
426 1495 0.322366 TTGGCATGGCAGACGATGAA 60.322 50.000 22.17 1.65 0.00 2.57
427 1496 0.322366 TTTGGCATGGCAGACGATGA 60.322 50.000 22.17 2.47 0.00 2.92
428 1497 0.527113 TTTTGGCATGGCAGACGATG 59.473 50.000 22.17 0.00 0.00 3.84
429 1498 1.477553 ATTTTGGCATGGCAGACGAT 58.522 45.000 22.17 11.62 0.00 3.73
430 1499 2.121291 TATTTTGGCATGGCAGACGA 57.879 45.000 22.17 4.50 0.00 4.20
431 1500 3.117794 CAATATTTTGGCATGGCAGACG 58.882 45.455 22.17 4.52 0.00 4.18
432 1501 3.460103 CCAATATTTTGGCATGGCAGAC 58.540 45.455 22.17 0.00 45.71 3.51
433 1502 3.823281 CCAATATTTTGGCATGGCAGA 57.177 42.857 22.17 15.62 45.71 4.26
443 1512 5.122239 TCTCTCAGTCAACGCCAATATTTTG 59.878 40.000 0.00 0.00 0.00 2.44
444 1513 5.245531 TCTCTCAGTCAACGCCAATATTTT 58.754 37.500 0.00 0.00 0.00 1.82
445 1514 4.832248 TCTCTCAGTCAACGCCAATATTT 58.168 39.130 0.00 0.00 0.00 1.40
446 1515 4.471904 TCTCTCAGTCAACGCCAATATT 57.528 40.909 0.00 0.00 0.00 1.28
447 1516 4.679373 ATCTCTCAGTCAACGCCAATAT 57.321 40.909 0.00 0.00 0.00 1.28
448 1517 5.592104 TTATCTCTCAGTCAACGCCAATA 57.408 39.130 0.00 0.00 0.00 1.90
449 1518 4.471904 TTATCTCTCAGTCAACGCCAAT 57.528 40.909 0.00 0.00 0.00 3.16
450 1519 3.953712 TTATCTCTCAGTCAACGCCAA 57.046 42.857 0.00 0.00 0.00 4.52
451 1520 3.953712 TTTATCTCTCAGTCAACGCCA 57.046 42.857 0.00 0.00 0.00 5.69
452 1521 4.184629 ACATTTATCTCTCAGTCAACGCC 58.815 43.478 0.00 0.00 0.00 5.68
453 1522 5.005203 CAGACATTTATCTCTCAGTCAACGC 59.995 44.000 0.00 0.00 0.00 4.84
454 1523 6.096036 ACAGACATTTATCTCTCAGTCAACG 58.904 40.000 0.00 0.00 0.00 4.10
455 1524 7.897575 AACAGACATTTATCTCTCAGTCAAC 57.102 36.000 0.00 0.00 0.00 3.18
456 1525 8.150296 TCAAACAGACATTTATCTCTCAGTCAA 58.850 33.333 0.00 0.00 0.00 3.18
457 1526 7.670364 TCAAACAGACATTTATCTCTCAGTCA 58.330 34.615 0.00 0.00 0.00 3.41
458 1527 8.539770 TTCAAACAGACATTTATCTCTCAGTC 57.460 34.615 0.00 0.00 0.00 3.51
459 1528 8.944029 CATTCAAACAGACATTTATCTCTCAGT 58.056 33.333 0.00 0.00 0.00 3.41
460 1529 8.396390 CCATTCAAACAGACATTTATCTCTCAG 58.604 37.037 0.00 0.00 0.00 3.35
461 1530 7.148188 GCCATTCAAACAGACATTTATCTCTCA 60.148 37.037 0.00 0.00 0.00 3.27
462 1531 7.066766 AGCCATTCAAACAGACATTTATCTCTC 59.933 37.037 0.00 0.00 0.00 3.20
463 1532 6.888632 AGCCATTCAAACAGACATTTATCTCT 59.111 34.615 0.00 0.00 0.00 3.10
464 1533 7.093322 AGCCATTCAAACAGACATTTATCTC 57.907 36.000 0.00 0.00 0.00 2.75
465 1534 7.472334 AAGCCATTCAAACAGACATTTATCT 57.528 32.000 0.00 0.00 0.00 1.98
466 1535 7.814107 TGAAAGCCATTCAAACAGACATTTATC 59.186 33.333 0.31 0.00 44.94 1.75
467 1536 7.669427 TGAAAGCCATTCAAACAGACATTTAT 58.331 30.769 0.31 0.00 44.94 1.40
468 1537 7.048629 TGAAAGCCATTCAAACAGACATTTA 57.951 32.000 0.31 0.00 44.94 1.40
469 1538 5.916318 TGAAAGCCATTCAAACAGACATTT 58.084 33.333 0.31 0.00 44.94 2.32
470 1539 5.534207 TGAAAGCCATTCAAACAGACATT 57.466 34.783 0.31 0.00 44.94 2.71
479 1548 4.322650 GCCAATAGGTTGAAAGCCATTCAA 60.323 41.667 10.35 10.35 45.93 2.69
480 1549 3.195396 GCCAATAGGTTGAAAGCCATTCA 59.805 43.478 0.00 0.00 40.60 2.57
481 1550 3.195396 TGCCAATAGGTTGAAAGCCATTC 59.805 43.478 0.00 0.00 37.53 2.67
482 1551 3.055891 GTGCCAATAGGTTGAAAGCCATT 60.056 43.478 0.00 0.00 37.53 3.16
483 1552 2.497273 GTGCCAATAGGTTGAAAGCCAT 59.503 45.455 0.00 0.00 37.53 4.40
484 1553 1.892474 GTGCCAATAGGTTGAAAGCCA 59.108 47.619 0.00 0.00 37.53 4.75
485 1554 1.135402 CGTGCCAATAGGTTGAAAGCC 60.135 52.381 0.00 0.00 37.53 4.35
486 1555 1.732405 GCGTGCCAATAGGTTGAAAGC 60.732 52.381 0.00 0.00 37.53 3.51
487 1556 1.135402 GGCGTGCCAATAGGTTGAAAG 60.135 52.381 5.89 0.00 37.53 2.62
488 1557 0.885196 GGCGTGCCAATAGGTTGAAA 59.115 50.000 5.89 0.00 37.53 2.69
489 1558 0.963355 GGGCGTGCCAATAGGTTGAA 60.963 55.000 13.76 0.00 37.53 2.69
490 1559 1.377987 GGGCGTGCCAATAGGTTGA 60.378 57.895 13.76 0.00 37.53 3.18
491 1560 1.037030 ATGGGCGTGCCAATAGGTTG 61.037 55.000 13.76 0.00 37.98 3.77
492 1561 0.751643 GATGGGCGTGCCAATAGGTT 60.752 55.000 13.76 0.00 37.98 3.50
493 1562 1.152963 GATGGGCGTGCCAATAGGT 60.153 57.895 13.76 0.00 37.98 3.08
494 1563 1.898574 GGATGGGCGTGCCAATAGG 60.899 63.158 13.76 0.00 37.98 2.57
495 1564 1.898574 GGGATGGGCGTGCCAATAG 60.899 63.158 13.76 0.00 37.98 1.73
496 1565 2.194597 GGGATGGGCGTGCCAATA 59.805 61.111 13.76 0.00 37.98 1.90
497 1566 4.059304 TGGGATGGGCGTGCCAAT 62.059 61.111 13.76 6.88 36.59 3.16
505 1574 3.682292 GAGTCGTGGTGGGATGGGC 62.682 68.421 0.00 0.00 0.00 5.36
506 1575 1.961180 GAGAGTCGTGGTGGGATGGG 61.961 65.000 0.00 0.00 0.00 4.00
507 1576 0.972983 AGAGAGTCGTGGTGGGATGG 60.973 60.000 0.00 0.00 0.00 3.51
508 1577 0.457851 GAGAGAGTCGTGGTGGGATG 59.542 60.000 0.00 0.00 0.00 3.51
509 1578 0.684805 GGAGAGAGTCGTGGTGGGAT 60.685 60.000 0.00 0.00 0.00 3.85
510 1579 1.304217 GGAGAGAGTCGTGGTGGGA 60.304 63.158 0.00 0.00 0.00 4.37
511 1580 0.972983 ATGGAGAGAGTCGTGGTGGG 60.973 60.000 0.00 0.00 0.00 4.61
512 1581 0.457851 GATGGAGAGAGTCGTGGTGG 59.542 60.000 0.00 0.00 0.00 4.61
513 1582 1.468985 AGATGGAGAGAGTCGTGGTG 58.531 55.000 0.00 0.00 0.00 4.17
514 1583 3.586470 ATAGATGGAGAGAGTCGTGGT 57.414 47.619 0.00 0.00 0.00 4.16
515 1584 4.141287 AGAATAGATGGAGAGAGTCGTGG 58.859 47.826 0.00 0.00 0.00 4.94
516 1585 6.565060 CGTTAGAATAGATGGAGAGAGTCGTG 60.565 46.154 0.00 0.00 0.00 4.35
517 1586 5.467399 CGTTAGAATAGATGGAGAGAGTCGT 59.533 44.000 0.00 0.00 0.00 4.34
518 1587 5.615984 GCGTTAGAATAGATGGAGAGAGTCG 60.616 48.000 0.00 0.00 0.00 4.18
519 1588 5.335348 GGCGTTAGAATAGATGGAGAGAGTC 60.335 48.000 0.00 0.00 0.00 3.36
520 1589 4.521256 GGCGTTAGAATAGATGGAGAGAGT 59.479 45.833 0.00 0.00 0.00 3.24
521 1590 4.520874 TGGCGTTAGAATAGATGGAGAGAG 59.479 45.833 0.00 0.00 0.00 3.20
522 1591 4.470602 TGGCGTTAGAATAGATGGAGAGA 58.529 43.478 0.00 0.00 0.00 3.10
523 1592 4.855715 TGGCGTTAGAATAGATGGAGAG 57.144 45.455 0.00 0.00 0.00 3.20
524 1593 5.607939 TTTGGCGTTAGAATAGATGGAGA 57.392 39.130 0.00 0.00 0.00 3.71
525 1594 5.991606 TGATTTGGCGTTAGAATAGATGGAG 59.008 40.000 0.00 0.00 0.00 3.86
526 1595 5.924356 TGATTTGGCGTTAGAATAGATGGA 58.076 37.500 0.00 0.00 0.00 3.41
527 1596 6.348786 CCATGATTTGGCGTTAGAATAGATGG 60.349 42.308 0.00 0.00 39.09 3.51
528 1597 6.348786 CCCATGATTTGGCGTTAGAATAGATG 60.349 42.308 0.00 0.00 44.97 2.90
529 1598 5.707298 CCCATGATTTGGCGTTAGAATAGAT 59.293 40.000 0.00 0.00 44.97 1.98
530 1599 5.063204 CCCATGATTTGGCGTTAGAATAGA 58.937 41.667 0.00 0.00 44.97 1.98
531 1600 4.320494 GCCCATGATTTGGCGTTAGAATAG 60.320 45.833 0.00 0.00 44.97 1.73
532 1601 3.568007 GCCCATGATTTGGCGTTAGAATA 59.432 43.478 0.00 0.00 44.97 1.75
533 1602 2.362077 GCCCATGATTTGGCGTTAGAAT 59.638 45.455 0.00 0.00 44.97 2.40
534 1603 1.748493 GCCCATGATTTGGCGTTAGAA 59.252 47.619 0.00 0.00 44.97 2.10
535 1604 1.388547 GCCCATGATTTGGCGTTAGA 58.611 50.000 0.00 0.00 44.97 2.10
536 1605 3.944871 GCCCATGATTTGGCGTTAG 57.055 52.632 0.00 0.00 44.97 2.34
541 1610 1.068127 GTGATCTGCCCATGATTTGGC 59.932 52.381 3.93 3.93 44.97 4.52
542 1611 2.361119 CTGTGATCTGCCCATGATTTGG 59.639 50.000 0.00 0.00 46.00 3.28
543 1612 2.361119 CCTGTGATCTGCCCATGATTTG 59.639 50.000 0.00 0.00 0.00 2.32
544 1613 2.024655 ACCTGTGATCTGCCCATGATTT 60.025 45.455 0.00 0.00 0.00 2.17
545 1614 1.567649 ACCTGTGATCTGCCCATGATT 59.432 47.619 0.00 0.00 0.00 2.57
546 1615 1.142465 GACCTGTGATCTGCCCATGAT 59.858 52.381 0.00 0.00 0.00 2.45
547 1616 0.543277 GACCTGTGATCTGCCCATGA 59.457 55.000 0.00 0.00 0.00 3.07
548 1617 0.812811 CGACCTGTGATCTGCCCATG 60.813 60.000 0.00 0.00 0.00 3.66
549 1618 0.977627 TCGACCTGTGATCTGCCCAT 60.978 55.000 0.00 0.00 0.00 4.00
550 1619 1.609210 TCGACCTGTGATCTGCCCA 60.609 57.895 0.00 0.00 0.00 5.36
551 1620 1.153549 GTCGACCTGTGATCTGCCC 60.154 63.158 3.51 0.00 0.00 5.36
552 1621 0.037326 TTGTCGACCTGTGATCTGCC 60.037 55.000 14.12 0.00 0.00 4.85
553 1622 1.795768 TTTGTCGACCTGTGATCTGC 58.204 50.000 14.12 0.00 0.00 4.26
554 1623 2.480419 GGTTTTGTCGACCTGTGATCTG 59.520 50.000 14.12 0.00 34.27 2.90
555 1624 2.104111 TGGTTTTGTCGACCTGTGATCT 59.896 45.455 14.12 0.00 38.04 2.75
556 1625 2.480419 CTGGTTTTGTCGACCTGTGATC 59.520 50.000 14.12 0.00 38.04 2.92
557 1626 2.494059 CTGGTTTTGTCGACCTGTGAT 58.506 47.619 14.12 0.00 38.04 3.06
558 1627 1.948104 CTGGTTTTGTCGACCTGTGA 58.052 50.000 14.12 0.00 38.04 3.58
559 1628 0.307760 GCTGGTTTTGTCGACCTGTG 59.692 55.000 14.12 0.00 38.11 3.66
560 1629 1.157870 CGCTGGTTTTGTCGACCTGT 61.158 55.000 14.12 0.00 38.11 4.00
561 1630 1.569493 CGCTGGTTTTGTCGACCTG 59.431 57.895 14.12 2.85 38.04 4.00
562 1631 2.251642 GCGCTGGTTTTGTCGACCT 61.252 57.895 14.12 0.00 38.04 3.85
563 1632 2.251371 GCGCTGGTTTTGTCGACC 59.749 61.111 14.12 0.00 37.69 4.79
564 1633 2.054140 TTGGCGCTGGTTTTGTCGAC 62.054 55.000 9.11 9.11 0.00 4.20
565 1634 1.169661 ATTGGCGCTGGTTTTGTCGA 61.170 50.000 7.64 0.00 0.00 4.20
566 1635 0.318614 AATTGGCGCTGGTTTTGTCG 60.319 50.000 7.64 0.00 0.00 4.35
567 1636 1.864565 AAATTGGCGCTGGTTTTGTC 58.135 45.000 7.64 0.00 0.00 3.18
568 1637 1.939255 CAAAATTGGCGCTGGTTTTGT 59.061 42.857 23.57 4.42 37.00 2.83
569 1638 1.939255 ACAAAATTGGCGCTGGTTTTG 59.061 42.857 26.94 26.94 43.53 2.44
570 1639 1.939255 CACAAAATTGGCGCTGGTTTT 59.061 42.857 7.64 9.20 0.00 2.43
571 1640 1.580815 CACAAAATTGGCGCTGGTTT 58.419 45.000 7.64 2.85 0.00 3.27
572 1641 0.249826 CCACAAAATTGGCGCTGGTT 60.250 50.000 7.64 0.00 0.00 3.67
573 1642 1.367102 CCACAAAATTGGCGCTGGT 59.633 52.632 7.64 0.00 0.00 4.00
574 1643 4.265282 CCACAAAATTGGCGCTGG 57.735 55.556 7.64 0.00 0.00 4.85
580 1649 1.003476 GGGGCAGCCACAAAATTGG 60.003 57.895 15.19 0.00 39.98 3.16
581 1650 0.320946 CAGGGGCAGCCACAAAATTG 60.321 55.000 18.55 0.00 0.00 2.32
582 1651 0.471591 TCAGGGGCAGCCACAAAATT 60.472 50.000 18.55 0.00 0.00 1.82
583 1652 0.252375 ATCAGGGGCAGCCACAAAAT 60.252 50.000 18.55 2.70 0.00 1.82
584 1653 0.471591 AATCAGGGGCAGCCACAAAA 60.472 50.000 18.55 0.00 0.00 2.44
585 1654 0.471591 AAATCAGGGGCAGCCACAAA 60.472 50.000 18.55 2.89 0.00 2.83
586 1655 1.155859 AAATCAGGGGCAGCCACAA 59.844 52.632 18.55 3.33 0.00 3.33
587 1656 1.607178 CAAATCAGGGGCAGCCACA 60.607 57.895 18.55 0.00 0.00 4.17
588 1657 2.353610 CCAAATCAGGGGCAGCCAC 61.354 63.158 15.19 10.64 0.00 5.01
589 1658 2.037687 CCAAATCAGGGGCAGCCA 59.962 61.111 15.19 0.00 0.00 4.75
590 1659 2.037847 ACCAAATCAGGGGCAGCC 59.962 61.111 1.26 1.26 0.00 4.85
591 1660 1.304381 TGACCAAATCAGGGGCAGC 60.304 57.895 0.00 0.00 38.94 5.25
599 1668 2.361104 GCCCGCCTGACCAAATCA 60.361 61.111 0.00 0.00 35.45 2.57
600 1669 1.754234 ATGCCCGCCTGACCAAATC 60.754 57.895 0.00 0.00 0.00 2.17
601 1670 2.053865 CATGCCCGCCTGACCAAAT 61.054 57.895 0.00 0.00 0.00 2.32
602 1671 2.676121 CATGCCCGCCTGACCAAA 60.676 61.111 0.00 0.00 0.00 3.28
603 1672 4.738998 CCATGCCCGCCTGACCAA 62.739 66.667 0.00 0.00 0.00 3.67
611 1680 3.830192 CTTCTTGCCCATGCCCGC 61.830 66.667 0.00 0.00 36.33 6.13
612 1681 3.830192 GCTTCTTGCCCATGCCCG 61.830 66.667 0.00 0.00 36.33 6.13
613 1682 1.829523 TTTGCTTCTTGCCCATGCCC 61.830 55.000 0.00 0.00 42.00 5.36
614 1683 0.671472 GTTTGCTTCTTGCCCATGCC 60.671 55.000 0.00 0.00 42.00 4.40
615 1684 0.033781 TGTTTGCTTCTTGCCCATGC 59.966 50.000 0.00 0.00 42.00 4.06
616 1685 1.938016 GCTGTTTGCTTCTTGCCCATG 60.938 52.381 0.00 0.00 42.00 3.66
617 1686 0.319405 GCTGTTTGCTTCTTGCCCAT 59.681 50.000 0.00 0.00 42.00 4.00
618 1687 1.741525 GCTGTTTGCTTCTTGCCCA 59.258 52.632 0.00 0.00 42.00 5.36
619 1688 1.005748 GGCTGTTTGCTTCTTGCCC 60.006 57.895 0.00 0.00 42.00 5.36
620 1689 1.005748 GGGCTGTTTGCTTCTTGCC 60.006 57.895 0.00 0.00 42.00 4.52
621 1690 1.005748 GGGGCTGTTTGCTTCTTGC 60.006 57.895 0.00 0.00 42.39 4.01
622 1691 1.114722 TGGGGGCTGTTTGCTTCTTG 61.115 55.000 0.00 0.00 42.39 3.02
623 1692 0.398381 TTGGGGGCTGTTTGCTTCTT 60.398 50.000 0.00 0.00 42.39 2.52
624 1693 0.398381 TTTGGGGGCTGTTTGCTTCT 60.398 50.000 0.00 0.00 42.39 2.85
625 1694 0.686789 ATTTGGGGGCTGTTTGCTTC 59.313 50.000 0.00 0.00 42.39 3.86
626 1695 0.397564 CATTTGGGGGCTGTTTGCTT 59.602 50.000 0.00 0.00 42.39 3.91
627 1696 2.060370 CATTTGGGGGCTGTTTGCT 58.940 52.632 0.00 0.00 42.39 3.91
628 1697 1.672030 GCATTTGGGGGCTGTTTGC 60.672 57.895 0.00 0.00 41.94 3.68
629 1698 1.003476 GGCATTTGGGGGCTGTTTG 60.003 57.895 0.00 0.00 0.00 2.93
630 1699 0.116143 TAGGCATTTGGGGGCTGTTT 59.884 50.000 0.00 0.00 41.71 2.83
631 1700 0.324645 CTAGGCATTTGGGGGCTGTT 60.325 55.000 0.00 0.00 41.71 3.16
632 1701 1.307647 CTAGGCATTTGGGGGCTGT 59.692 57.895 0.00 0.00 41.71 4.40
633 1702 0.324645 AACTAGGCATTTGGGGGCTG 60.325 55.000 0.00 0.00 41.71 4.85
634 1703 0.413434 AAACTAGGCATTTGGGGGCT 59.587 50.000 0.00 0.00 44.15 5.19
635 1704 0.824109 GAAACTAGGCATTTGGGGGC 59.176 55.000 0.00 0.00 0.00 5.80
636 1705 2.379005 GAGAAACTAGGCATTTGGGGG 58.621 52.381 0.00 0.00 0.00 5.40
637 1706 2.017049 CGAGAAACTAGGCATTTGGGG 58.983 52.381 0.00 0.00 0.00 4.96
638 1707 2.420022 CACGAGAAACTAGGCATTTGGG 59.580 50.000 0.00 0.00 0.00 4.12
639 1708 3.074412 ACACGAGAAACTAGGCATTTGG 58.926 45.455 0.00 0.00 0.00 3.28
640 1709 4.749245 AACACGAGAAACTAGGCATTTG 57.251 40.909 0.00 0.00 0.00 2.32
641 1710 7.448748 AATAAACACGAGAAACTAGGCATTT 57.551 32.000 0.00 0.00 0.00 2.32
642 1711 7.448748 AAATAAACACGAGAAACTAGGCATT 57.551 32.000 0.00 0.00 0.00 3.56
643 1712 7.822822 AGTAAATAAACACGAGAAACTAGGCAT 59.177 33.333 0.00 0.00 0.00 4.40
644 1713 7.156673 AGTAAATAAACACGAGAAACTAGGCA 58.843 34.615 0.00 0.00 0.00 4.75
645 1714 7.592439 AGTAAATAAACACGAGAAACTAGGC 57.408 36.000 0.00 0.00 0.00 3.93
677 1746 5.449177 GCTCATACACACCCATTTTTCTAGC 60.449 44.000 0.00 0.00 0.00 3.42
678 2013 5.647658 TGCTCATACACACCCATTTTTCTAG 59.352 40.000 0.00 0.00 0.00 2.43
702 2038 4.147321 ACAGAAGACATGCCAAATTCACT 58.853 39.130 0.00 0.00 0.00 3.41
728 2064 1.001181 GCAAGATTGGCCAGAAAGCAA 59.999 47.619 5.11 0.00 0.00 3.91
740 2076 3.306917 TGTGCTGAATTGGCAAGATTG 57.693 42.857 5.96 0.00 41.54 2.67
745 2081 1.479730 TGTGTTGTGCTGAATTGGCAA 59.520 42.857 0.68 0.68 41.54 4.52
747 2083 2.129607 CTTGTGTTGTGCTGAATTGGC 58.870 47.619 0.00 0.00 0.00 4.52
765 2101 4.081476 GGCAATGGCATACTCTTTTTCCTT 60.081 41.667 0.00 0.00 43.71 3.36
945 2287 1.009389 GTGTGGAGTTTCGGAGCTCG 61.009 60.000 7.83 3.33 34.27 5.03
983 2330 1.269936 GCATTGCAAAGAAGCTGTGGT 60.270 47.619 1.71 0.00 34.99 4.16
1014 2361 4.828296 GACGGCGAGGAGGGGGTA 62.828 72.222 16.62 0.00 0.00 3.69
1297 2644 2.594592 GGACTTGTTGCGGGTGCT 60.595 61.111 0.00 0.00 43.34 4.40
1307 2654 4.681978 GCGAGGCACCGGACTTGT 62.682 66.667 9.46 0.00 35.77 3.16
1413 2763 3.049674 CGCTTCCTTGCCTTCGCA 61.050 61.111 0.00 0.00 45.49 5.10
1422 2772 2.595463 TGCTGCTTGCGCTTCCTT 60.595 55.556 9.73 0.00 46.63 3.36
1485 2835 2.496817 CGGTAGAGGCTCAGCACC 59.503 66.667 18.26 18.13 0.00 5.01
1670 3024 1.286553 ACCCACACACCCAAGAGAAAA 59.713 47.619 0.00 0.00 0.00 2.29
1674 3028 0.106719 ACAACCCACACACCCAAGAG 60.107 55.000 0.00 0.00 0.00 2.85
1742 3100 3.879295 CACATTCCTAATTCATCGGTGCT 59.121 43.478 0.00 0.00 0.00 4.40
1743 3101 3.548818 GCACATTCCTAATTCATCGGTGC 60.549 47.826 0.00 0.00 41.66 5.01
1780 3138 2.943033 ACCCTTAATTACAGCGTCATGC 59.057 45.455 0.00 0.00 46.98 4.06
1882 3250 5.151389 CGTTTAATCAACAACTGGCCTAAC 58.849 41.667 3.32 0.00 34.68 2.34
1999 3374 2.880890 TCTGGAAAAGAGAAACTGCAGC 59.119 45.455 15.27 0.00 0.00 5.25
2048 3423 4.715896 AGCGCATGCAATCTAATAAATCG 58.284 39.130 19.57 0.00 46.23 3.34
2068 3443 1.090052 GCCCACTTGACCGTGATAGC 61.090 60.000 0.00 0.00 37.06 2.97
2138 3513 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
2139 3514 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
2140 3515 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
2141 3516 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
2142 3517 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
2143 3518 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
2144 3519 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
2165 3540 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
2166 3541 8.350722 GGACTTTTTAGTTGGGACTAGAAAAAG 58.649 37.037 17.36 17.36 45.76 2.27
2167 3542 7.286087 GGGACTTTTTAGTTGGGACTAGAAAAA 59.714 37.037 0.00 0.00 40.10 1.94
2168 3543 6.774170 GGGACTTTTTAGTTGGGACTAGAAAA 59.226 38.462 0.00 5.68 40.10 2.29
2169 3544 6.102174 AGGGACTTTTTAGTTGGGACTAGAAA 59.898 38.462 0.00 3.34 39.04 2.52
2170 3545 5.609708 AGGGACTTTTTAGTTGGGACTAGAA 59.390 40.000 0.00 0.00 35.67 2.10
2171 3546 5.160386 AGGGACTTTTTAGTTGGGACTAGA 58.840 41.667 0.00 0.00 35.67 2.43
2172 3547 5.500546 AGGGACTTTTTAGTTGGGACTAG 57.499 43.478 0.00 0.00 35.67 2.57
2173 3548 6.086775 ACTAGGGACTTTTTAGTTGGGACTA 58.913 40.000 0.00 0.00 41.75 2.59
2174 3549 4.912133 ACTAGGGACTTTTTAGTTGGGACT 59.088 41.667 0.00 0.00 41.75 3.85
2175 3550 5.238624 ACTAGGGACTTTTTAGTTGGGAC 57.761 43.478 0.00 0.00 41.75 4.46
2176 3551 4.287845 GGACTAGGGACTTTTTAGTTGGGA 59.712 45.833 0.00 0.00 41.75 4.37
2177 3552 4.567116 GGGACTAGGGACTTTTTAGTTGGG 60.567 50.000 0.00 0.00 41.75 4.12
2178 3553 4.288887 AGGGACTAGGGACTTTTTAGTTGG 59.711 45.833 0.00 0.00 41.75 3.77
2179 3554 5.500546 AGGGACTAGGGACTTTTTAGTTG 57.499 43.478 0.00 0.00 41.75 3.16
2180 3555 7.637548 TTTAGGGACTAGGGACTTTTTAGTT 57.362 36.000 0.00 0.00 44.25 2.24
2181 3556 7.637548 TTTTAGGGACTAGGGACTTTTTAGT 57.362 36.000 0.00 0.00 44.25 2.24
2203 3578 7.124147 TCTGAAAACAAACAGAGAGGGATTTTT 59.876 33.333 0.00 0.00 38.08 1.94
2204 3579 6.607198 TCTGAAAACAAACAGAGAGGGATTTT 59.393 34.615 0.00 0.00 38.08 1.82
2205 3580 6.129179 TCTGAAAACAAACAGAGAGGGATTT 58.871 36.000 0.00 0.00 38.08 2.17
2206 3581 5.694995 TCTGAAAACAAACAGAGAGGGATT 58.305 37.500 0.00 0.00 38.08 3.01
2207 3582 5.310409 TCTGAAAACAAACAGAGAGGGAT 57.690 39.130 0.00 0.00 38.08 3.85
2208 3583 4.771114 TCTGAAAACAAACAGAGAGGGA 57.229 40.909 0.00 0.00 38.08 4.20
2214 3589 9.010029 ACTTTTTAGTCTCTGAAAACAAACAGA 57.990 29.630 0.00 0.00 40.22 3.41
2215 3590 9.278734 GACTTTTTAGTCTCTGAAAACAAACAG 57.721 33.333 0.00 0.00 36.01 3.16
2216 3591 8.241367 GGACTTTTTAGTCTCTGAAAACAAACA 58.759 33.333 5.40 0.00 38.74 2.83
2217 3592 8.459635 AGGACTTTTTAGTCTCTGAAAACAAAC 58.540 33.333 5.40 0.00 38.74 2.93
2218 3593 8.575649 AGGACTTTTTAGTCTCTGAAAACAAA 57.424 30.769 5.40 0.00 38.74 2.83
2219 3594 8.575649 AAGGACTTTTTAGTCTCTGAAAACAA 57.424 30.769 5.40 0.00 38.74 2.83
2220 3595 9.326413 CTAAGGACTTTTTAGTCTCTGAAAACA 57.674 33.333 5.40 0.00 38.74 2.83
2221 3596 9.327628 ACTAAGGACTTTTTAGTCTCTGAAAAC 57.672 33.333 5.40 0.00 36.84 2.43
2222 3597 9.543783 GACTAAGGACTTTTTAGTCTCTGAAAA 57.456 33.333 14.63 0.00 46.89 2.29
2231 3606 5.850583 AGGAAGGGACTAAGGACTTTTTAGT 59.149 40.000 0.00 0.00 42.43 2.24
2232 3607 6.375830 AGGAAGGGACTAAGGACTTTTTAG 57.624 41.667 0.00 0.00 38.49 1.85
2233 3608 7.876978 TTAGGAAGGGACTAAGGACTTTTTA 57.123 36.000 0.00 0.00 38.49 1.52
2234 3609 6.775234 TTAGGAAGGGACTAAGGACTTTTT 57.225 37.500 0.00 0.00 38.49 1.94
2235 3610 6.775234 TTTAGGAAGGGACTAAGGACTTTT 57.225 37.500 0.00 0.00 38.49 2.27
2236 3611 6.375830 CTTTAGGAAGGGACTAAGGACTTT 57.624 41.667 0.00 0.00 38.49 2.66
2260 3635 7.119709 AGGGGCAACATGGTTATTTAATAAC 57.880 36.000 16.90 16.90 40.93 1.89
2261 3636 9.440761 AATAGGGGCAACATGGTTATTTAATAA 57.559 29.630 0.00 0.00 39.74 1.40
2263 3638 7.929348 AATAGGGGCAACATGGTTATTTAAT 57.071 32.000 0.00 0.00 39.74 1.40
2267 3642 9.920946 CTATATAATAGGGGCAACATGGTTATT 57.079 33.333 0.00 0.00 39.74 1.40
2268 3643 9.291516 TCTATATAATAGGGGCAACATGGTTAT 57.708 33.333 0.00 0.00 39.74 1.89
2269 3644 8.688222 TCTATATAATAGGGGCAACATGGTTA 57.312 34.615 0.00 0.00 39.74 2.85
2270 3645 7.582909 TCTATATAATAGGGGCAACATGGTT 57.417 36.000 0.00 0.00 39.74 3.67
2271 3646 7.582909 TTCTATATAATAGGGGCAACATGGT 57.417 36.000 0.00 0.00 39.74 3.55
2272 3647 8.877864 TTTTCTATATAATAGGGGCAACATGG 57.122 34.615 0.00 0.00 39.74 3.66
2296 3671 9.054922 CCTCATGGTGTTGTTTGATTTTTATTT 57.945 29.630 0.00 0.00 0.00 1.40
2297 3672 8.210265 ACCTCATGGTGTTGTTTGATTTTTATT 58.790 29.630 0.00 0.00 46.51 1.40
2298 3673 7.734942 ACCTCATGGTGTTGTTTGATTTTTAT 58.265 30.769 0.00 0.00 46.51 1.40
2299 3674 7.118496 ACCTCATGGTGTTGTTTGATTTTTA 57.882 32.000 0.00 0.00 46.51 1.52
2300 3675 5.988287 ACCTCATGGTGTTGTTTGATTTTT 58.012 33.333 0.00 0.00 46.51 1.94
2301 3676 5.612725 ACCTCATGGTGTTGTTTGATTTT 57.387 34.783 0.00 0.00 46.51 1.82
2325 3700 3.142838 ATGCACTCATTGGCCCGC 61.143 61.111 0.00 0.00 0.00 6.13
2326 3701 2.777972 CCATGCACTCATTGGCCCG 61.778 63.158 0.00 0.00 0.00 6.13
2327 3702 1.380246 TCCATGCACTCATTGGCCC 60.380 57.895 0.00 0.00 0.00 5.80
2328 3703 1.389609 CCTCCATGCACTCATTGGCC 61.390 60.000 0.00 0.00 0.00 5.36
2329 3704 1.389609 CCCTCCATGCACTCATTGGC 61.390 60.000 0.00 0.00 0.00 4.52
2330 3705 0.754217 CCCCTCCATGCACTCATTGG 60.754 60.000 0.00 0.00 0.00 3.16
2331 3706 1.389609 GCCCCTCCATGCACTCATTG 61.390 60.000 0.00 0.00 0.00 2.82
2332 3707 1.076485 GCCCCTCCATGCACTCATT 60.076 57.895 0.00 0.00 0.00 2.57
2333 3708 1.652187 ATGCCCCTCCATGCACTCAT 61.652 55.000 0.00 0.00 40.88 2.90
2334 3709 1.866483 AATGCCCCTCCATGCACTCA 61.866 55.000 0.00 0.00 40.88 3.41
2335 3710 1.076485 AATGCCCCTCCATGCACTC 60.076 57.895 0.00 0.00 40.88 3.51
2336 3711 1.380785 CAATGCCCCTCCATGCACT 60.381 57.895 0.00 0.00 40.88 4.40
2337 3712 1.259840 AACAATGCCCCTCCATGCAC 61.260 55.000 0.00 0.00 40.88 4.57
2338 3713 1.078891 AACAATGCCCCTCCATGCA 59.921 52.632 0.00 0.00 42.52 3.96
2339 3714 1.518774 CAACAATGCCCCTCCATGC 59.481 57.895 0.00 0.00 0.00 4.06
2340 3715 0.324552 TCCAACAATGCCCCTCCATG 60.325 55.000 0.00 0.00 0.00 3.66
2341 3716 0.413037 TTCCAACAATGCCCCTCCAT 59.587 50.000 0.00 0.00 0.00 3.41
2342 3717 0.189574 TTTCCAACAATGCCCCTCCA 59.810 50.000 0.00 0.00 0.00 3.86
2343 3718 1.276138 CTTTTCCAACAATGCCCCTCC 59.724 52.381 0.00 0.00 0.00 4.30
2344 3719 1.970640 ACTTTTCCAACAATGCCCCTC 59.029 47.619 0.00 0.00 0.00 4.30
2345 3720 1.970640 GACTTTTCCAACAATGCCCCT 59.029 47.619 0.00 0.00 0.00 4.79
2346 3721 1.001974 GGACTTTTCCAACAATGCCCC 59.998 52.381 0.00 0.00 42.30 5.80
2347 3722 1.001974 GGGACTTTTCCAACAATGCCC 59.998 52.381 0.00 0.00 44.98 5.36
2348 3723 1.691434 TGGGACTTTTCCAACAATGCC 59.309 47.619 0.00 0.00 44.98 4.40
2349 3724 3.467374 TTGGGACTTTTCCAACAATGC 57.533 42.857 0.00 0.00 44.98 3.56
2350 3725 6.037062 GTCTTTTTGGGACTTTTCCAACAATG 59.963 38.462 0.00 0.00 44.98 2.82
2351 3726 6.070251 AGTCTTTTTGGGACTTTTCCAACAAT 60.070 34.615 0.00 0.00 44.98 2.71
2352 3727 5.247337 AGTCTTTTTGGGACTTTTCCAACAA 59.753 36.000 0.00 0.00 44.98 2.83
2353 3728 4.775253 AGTCTTTTTGGGACTTTTCCAACA 59.225 37.500 0.00 0.00 44.98 3.33
2354 3729 5.127194 AGAGTCTTTTTGGGACTTTTCCAAC 59.873 40.000 0.00 0.00 44.98 3.77
2355 3730 5.269189 AGAGTCTTTTTGGGACTTTTCCAA 58.731 37.500 0.00 0.00 44.98 3.53
2356 3731 4.867086 AGAGTCTTTTTGGGACTTTTCCA 58.133 39.130 0.00 0.00 44.98 3.53
2357 3732 4.278669 GGAGAGTCTTTTTGGGACTTTTCC 59.721 45.833 0.00 0.00 43.13 3.13
2358 3733 5.133941 AGGAGAGTCTTTTTGGGACTTTTC 58.866 41.667 0.00 0.00 43.13 2.29
2359 3734 5.130705 AGGAGAGTCTTTTTGGGACTTTT 57.869 39.130 0.00 0.00 43.13 2.27
2360 3735 4.797912 AGGAGAGTCTTTTTGGGACTTT 57.202 40.909 0.00 0.00 43.13 2.66
2361 3736 4.797912 AAGGAGAGTCTTTTTGGGACTT 57.202 40.909 0.00 0.00 43.13 3.01
2362 3737 5.607171 TCTTAAGGAGAGTCTTTTTGGGACT 59.393 40.000 1.85 0.00 45.37 3.85
2363 3738 5.866207 TCTTAAGGAGAGTCTTTTTGGGAC 58.134 41.667 1.85 0.00 0.00 4.46
2364 3739 6.115448 CTCTTAAGGAGAGTCTTTTTGGGA 57.885 41.667 1.85 0.00 45.69 4.37
2376 3751 9.315363 ACTAAATGAAGAAGACTCTTAAGGAGA 57.685 33.333 1.85 0.00 42.19 3.71
2377 3752 9.581099 GACTAAATGAAGAAGACTCTTAAGGAG 57.419 37.037 1.85 1.79 42.19 3.69
2378 3753 8.532819 GGACTAAATGAAGAAGACTCTTAAGGA 58.467 37.037 1.85 0.00 42.19 3.36
2379 3754 7.766738 GGGACTAAATGAAGAAGACTCTTAAGG 59.233 40.741 1.85 0.00 42.19 2.69
2380 3755 8.314751 TGGGACTAAATGAAGAAGACTCTTAAG 58.685 37.037 0.00 0.00 42.19 1.85
2381 3756 8.202461 TGGGACTAAATGAAGAAGACTCTTAA 57.798 34.615 0.00 0.00 42.19 1.85
2382 3757 7.792364 TGGGACTAAATGAAGAAGACTCTTA 57.208 36.000 0.00 0.00 42.19 2.10
2383 3758 6.688073 TGGGACTAAATGAAGAAGACTCTT 57.312 37.500 0.00 0.00 44.93 2.85
2384 3759 6.688073 TTGGGACTAAATGAAGAAGACTCT 57.312 37.500 0.00 0.00 0.00 3.24
2385 3760 7.627300 GCATTTGGGACTAAATGAAGAAGACTC 60.627 40.741 20.68 1.26 46.13 3.36
2386 3761 6.151817 GCATTTGGGACTAAATGAAGAAGACT 59.848 38.462 20.68 0.00 46.13 3.24
2387 3762 6.325596 GCATTTGGGACTAAATGAAGAAGAC 58.674 40.000 20.68 2.40 46.13 3.01
2388 3763 5.418840 GGCATTTGGGACTAAATGAAGAAGA 59.581 40.000 20.68 0.00 46.13 2.87
2389 3764 5.420104 AGGCATTTGGGACTAAATGAAGAAG 59.580 40.000 20.68 0.00 46.13 2.85
2390 3765 5.332743 AGGCATTTGGGACTAAATGAAGAA 58.667 37.500 20.68 0.00 46.13 2.52
2391 3766 4.934356 AGGCATTTGGGACTAAATGAAGA 58.066 39.130 20.68 0.00 46.13 2.87
2392 3767 5.888161 ACTAGGCATTTGGGACTAAATGAAG 59.112 40.000 20.68 16.00 46.13 3.02
2393 3768 5.826643 ACTAGGCATTTGGGACTAAATGAA 58.173 37.500 20.68 7.74 46.13 2.57
2394 3769 5.450818 ACTAGGCATTTGGGACTAAATGA 57.549 39.130 20.68 3.88 46.13 2.57
2395 3770 6.530019 AAACTAGGCATTTGGGACTAAATG 57.470 37.500 14.45 14.45 46.03 2.32
2396 3771 7.410991 ACTAAACTAGGCATTTGGGACTAAAT 58.589 34.615 0.00 0.00 0.00 1.40
2397 3772 6.786122 ACTAAACTAGGCATTTGGGACTAAA 58.214 36.000 0.00 0.00 0.00 1.85
2398 3773 6.382919 ACTAAACTAGGCATTTGGGACTAA 57.617 37.500 0.00 0.00 0.00 2.24
2399 3774 5.104652 GGACTAAACTAGGCATTTGGGACTA 60.105 44.000 0.00 0.00 34.70 2.59
2400 3775 4.324331 GGACTAAACTAGGCATTTGGGACT 60.324 45.833 0.00 0.00 34.70 3.85
2401 3776 3.945921 GGACTAAACTAGGCATTTGGGAC 59.054 47.826 0.00 0.00 34.70 4.46
2402 3777 3.053917 GGGACTAAACTAGGCATTTGGGA 60.054 47.826 0.00 0.00 34.70 4.37
2403 3778 3.053619 AGGGACTAAACTAGGCATTTGGG 60.054 47.826 0.00 0.00 36.02 4.12
2404 3779 4.236527 AGGGACTAAACTAGGCATTTGG 57.763 45.455 0.00 0.00 36.02 3.28
2417 3792 3.848377 GGGAGGGACTTTTTAGGGACTAA 59.152 47.826 0.00 0.00 45.97 2.24
2418 3793 3.457836 GGGAGGGACTTTTTAGGGACTA 58.542 50.000 0.00 0.00 41.55 2.59
2419 3794 2.276391 GGGAGGGACTTTTTAGGGACT 58.724 52.381 0.00 0.00 41.55 3.85
2420 3795 1.065636 CGGGAGGGACTTTTTAGGGAC 60.066 57.143 0.00 0.00 41.55 4.46
2421 3796 1.282382 CGGGAGGGACTTTTTAGGGA 58.718 55.000 0.00 0.00 41.55 4.20
2422 3797 0.989602 ACGGGAGGGACTTTTTAGGG 59.010 55.000 0.00 0.00 41.55 3.53
2423 3798 2.817844 CAAACGGGAGGGACTTTTTAGG 59.182 50.000 0.00 0.00 41.55 2.69
2424 3799 3.746940 TCAAACGGGAGGGACTTTTTAG 58.253 45.455 0.00 0.00 41.55 1.85
2425 3800 3.860968 TCAAACGGGAGGGACTTTTTA 57.139 42.857 0.00 0.00 41.55 1.52
2426 3801 2.740506 TCAAACGGGAGGGACTTTTT 57.259 45.000 0.00 0.00 41.55 1.94
2427 3802 2.971901 ATCAAACGGGAGGGACTTTT 57.028 45.000 0.00 0.00 41.55 2.27
2428 3803 4.376225 TTTATCAAACGGGAGGGACTTT 57.624 40.909 0.00 0.00 41.55 2.66
2429 3804 4.376225 TTTTATCAAACGGGAGGGACTT 57.624 40.909 0.00 0.00 41.55 3.01
2452 3827 6.796648 ACTAGAAAAAGTCCCTCTAGAGACT 58.203 40.000 21.76 14.45 45.18 3.24
2453 3828 7.092137 GACTAGAAAAAGTCCCTCTAGAGAC 57.908 44.000 21.76 12.33 40.70 3.36
2464 3839 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
2486 3861 5.242434 GGTGTTTGTTTTCAGGGACTTTTT 58.758 37.500 0.00 0.00 34.60 1.94
2487 3862 4.323180 GGGTGTTTGTTTTCAGGGACTTTT 60.323 41.667 0.00 0.00 34.60 2.27
2488 3863 3.196901 GGGTGTTTGTTTTCAGGGACTTT 59.803 43.478 0.00 0.00 34.60 2.66
2489 3864 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
2490 3865 2.024369 AGGGTGTTTGTTTTCAGGGACT 60.024 45.455 0.00 0.00 43.88 3.85
2491 3866 2.361119 GAGGGTGTTTGTTTTCAGGGAC 59.639 50.000 0.00 0.00 0.00 4.46
2492 3867 2.243736 AGAGGGTGTTTGTTTTCAGGGA 59.756 45.455 0.00 0.00 0.00 4.20
2493 3868 2.666317 AGAGGGTGTTTGTTTTCAGGG 58.334 47.619 0.00 0.00 0.00 4.45
2494 3869 6.183360 ACAATAAGAGGGTGTTTGTTTTCAGG 60.183 38.462 0.00 0.00 0.00 3.86
2495 3870 6.805713 ACAATAAGAGGGTGTTTGTTTTCAG 58.194 36.000 0.00 0.00 0.00 3.02
2496 3871 6.605594 AGACAATAAGAGGGTGTTTGTTTTCA 59.394 34.615 0.00 0.00 31.09 2.69
2497 3872 7.039313 AGACAATAAGAGGGTGTTTGTTTTC 57.961 36.000 0.00 0.00 31.09 2.29
2498 3873 7.342026 AGAAGACAATAAGAGGGTGTTTGTTTT 59.658 33.333 0.00 0.00 31.09 2.43
2499 3874 6.833933 AGAAGACAATAAGAGGGTGTTTGTTT 59.166 34.615 0.00 0.00 31.09 2.83
2500 3875 6.365520 AGAAGACAATAAGAGGGTGTTTGTT 58.634 36.000 0.00 0.00 31.09 2.83
2501 3876 5.941788 AGAAGACAATAAGAGGGTGTTTGT 58.058 37.500 0.00 0.00 33.47 2.83
2502 3877 6.234177 AGAGAAGACAATAAGAGGGTGTTTG 58.766 40.000 0.00 0.00 0.00 2.93
2503 3878 6.441088 AGAGAAGACAATAAGAGGGTGTTT 57.559 37.500 0.00 0.00 0.00 2.83
2504 3879 6.441088 AAGAGAAGACAATAAGAGGGTGTT 57.559 37.500 0.00 0.00 0.00 3.32
2505 3880 6.441088 AAAGAGAAGACAATAAGAGGGTGT 57.559 37.500 0.00 0.00 0.00 4.16
2548 3923 9.810545 CATTTGTTTACTGTTTCTTCCCTAAAA 57.189 29.630 0.00 0.00 0.00 1.52
2549 3924 8.973182 ACATTTGTTTACTGTTTCTTCCCTAAA 58.027 29.630 0.00 0.00 0.00 1.85
2550 3925 8.528044 ACATTTGTTTACTGTTTCTTCCCTAA 57.472 30.769 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.