>input_sequence_75425
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--------------------------ATGCCCAACCCGCCTACCCCCTCCTCGCCGTCGCCGCTCCCGGCCCCGGCGCGC
AAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTCCTCACGTCCCCGAAGCCGTCGTCCGCTCCCACCTCCTCGTCCTCGTC
GGCGTCGTCGGCGTCGTCTTCCTCCGCGTCCTTCTCCTTCGCCCCCTTCTCCCCGGCGCCCTCGCCGTTCCACCACCGCT
TCCTCTCCCCGCTCCGGGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCTGGCATCCCCAAGACCCCCGCGCGCGGC
GCCAGCACCCGCAACAAGTCCGGTGCC---TCGCCGCTACCCCTCCCGCCGTCGCTCTTCTCCAACAACAAGGTGGTCGC
CGAGTACTCCTTCGGCGCCGACGGCGCGTACTCCGTCGTCCCTGCGAAGGCAAGGAAGCGCAAGCAGCAGCGGCGGTGGC
CGGCGGTGACCGACGCCCTGACCGAGTGGCTGGCGGTGCTGAGCCTCTACCGGTCGTGCACGAGGTCGCGCGACTCCCTC
GCCGCCTCCGGCCCGCCGCCGCACCCGCGCCGGTGCTCGCCCTAG-----------------------------------
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>chr2D_1_TraesCS2D01G303300
GAAACGAAGGGAGTACATCATTTAGCTTAGTATAAAAACAGTCCTACTTACATAAAGCGAATTTGACCTTTGAAAAAGAA
ATTGACCTTTCAAACTTTAACTATCAATGCCTTTAAATATGTTCAGATTGGATATTTGAAAAGCATAGAGGGGAAATTTT
GTGGCTGCACCATGCCAGCACCTCTCCTCCGCCGGTAGGTCACCACCCTCCTCCACCACCA---GTCCCATCGGTGTCGT
AGTGTGGAAAATCGGGAAGGCCTGGATTTTGTG-----------------------------------------------
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----------------------------------------------------------TGGAAGTTGTGTGCTTAAAACC
GTGTATGCGTCTATTAGTTTGGTTGTTTGAAGAACTAGAGGAAATATAAATCAAATTAATCACGATGAAAGCAAACATCA
TGTGCGGTGTGTTAAGGATTACTTCTTCAAAATCAAAGGGCTGTTTGGATTGCATTCATCGTCTGCCATGCCAAAATATT
GGCGTTGACTGAGAGATAAATGTCTGTTTGAATGGCTTTCAACCTATTGGCACGCCCATCCCACCACGACTCTCTCCATC
TATTCTAACGCCAAATCATGGGCAGATCACAGGTCGACAAAACCAGCGCCAATTTTGTGGCTGCCCCTGATTTGGTCAGG
CGGGCATGGGCAAGAAGCAAACAGCCCCCAAATGCCTAGTTTCTCGTGTTTATTTACTTATGTTTG--------------
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------------CTAGAAAAATGGGTGTGTATG-AGCAGTGAATTTGGCATGTCTTCTGTAAATTGCTTTCTGGCCAATC
TTGCCAATTCAGCACAACACAAGGAAAAAGAGTATGCCAT----TGCCATACGA-CCGGCTCCTCTGCCAACGTGTACAG
AGGAAGCAAGGCAGGCGTCCACGTCATGCCATGCCACGTGGCGGAGCTAGCCAGGCAGACCGCGCCCCCATTTGCGCGCG
CGCCGACGCCATGACCCAACCATAAAA-GACCACAAGCCCCACACTCGAGCTCCGAAACT-----CCACACCACACCACG
GCACCACAAACCACAGCTTCTTTGCAATGCCCAACCCGCCTACCCCCTCCTCGCCGTCGCCGCTCCCGGCCCCGGCGCGC
AAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTCCTCACGTCCCCGAAGCCGTCGTCCGCTCCCACCTCCTCGTCCTCGTC
GGCGTCGTCGGCGTCGTCTTCCTCCGCGTCCTTCTCCTTCGCCCCCTTCTCCCCGGCGCCCTCGCCGTTCCACCACCGCT
TCCTCTCCCCGCTCCGGGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCTGGCATCCCCAAGACCCCCGCGCGCGGC
GCCAGCACCCGCAACAAGTCCGGTGCC---TCGCCGCTACCCCTCCCGCCGTCGCTCTTCTCCAACAACAAGGTGGTCGC
CGAGTACTCCTTCGGCGCCGACGGCGCGTACTCCGTCGTCCCTGCGAAGGCAAGGAAGCGCAAGCAGCAGCGGCGGTGGC
CGGCGGTGACCGACGCCCTGACCGAGTGGCTGGCGGTGCTGAGCCTCTACCGGTCGTGCACGAGGTCGCGCGACTCCCTC
GCCGCCTCCGGCCCGCCGCCGCACCCGCGCCGGTGCTCGCCCTAGGCCCGGCCGGCGAGCCGGCCGGCATCGACCAGTAC
GTAACGTACGTAGAGAGTCGGTGTGCGTGTGCCCCGTAT---TGTCCTTCCTTTTCCTTTTT-TTTTCTCTTGGGTGTGT
GGGTTGTGTTGAGTT----CGTACGTACGTATACGTTCGTTGGTGCCCGATCGTAGTACAGCACCGATGAATTAGGAATG
TGCTTGCGAATTTGGTGGCATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCGGTATGTGCATGTGCTTGCTC-----
---CAATAATTAATGGATAATTCGGCACGATTGATTGATT--TAGTACTGTTAGGCCAGTTGTTGATTAAACGGTTA---
-TTTTATTGTTGGTTAAAGGATTCAATAATGTCAGTTTTACACTTGGCATTATTACATGCATGTGGGTGGTGCAGTGCGC
---ATGCATGTCTGCTGCAGTTTCTCTTTTCCAGAAAATGTGCTACGAGTACGCTATATTTGCGATTTATTAGATTGCAT
GCGCTATCACGGTCAAGTGGGCCACGACTGTTCCAAGCACGATATGATTATCGAGGACATGTTGCTATATTAGGTGGTGT
TTGGTTCTCTAGTCCTAGGACTTTTTCTAGTCCCAACTAAAAAGTCCCTAGTCCCTAAAAAATCCCTCTCTGTTTGTTTT
CAGAGACTAAAAAGTCCTTAGTCCCTTCCTAAAGGTTATTAAATAACCATGTTGCCCCTATTATATAGAAAAATAAAAAT
CAAACAACACCATGAGGTGGCGGGCCAATGAGTGCATGGAGGGGCATTGTTGGAAAAGTCCCAAAAAGACTCTCCTTAAG
AGTCTTCTTCATTTAGTCCCAAATGCCTAGTTTAGTCCCTAAAAAGTCCCTCCCGTTTGATAAAAAAGTCTCTAGAGGGA
CTTTTTCTAGTCCCTACACAAAAAAGTCCCTGAAAACAAACACCCTCTTATTGTCTTCTCTTTTATAGAATGCTTCATGG
TTTTTTAGGGAAGAAACAGTAAACAAATGT
>chr2A_13
------------GTACTCCACTTAGCTTAG--TAAAACCAGTCCTACTTACATAAAGCGAATTTGACATTTCAAAAAGAA
ATTGACCTTTCAAACTTTAACTACCAGTGTCTTTAAATATGTTCAGATAGGATGTTTGAAAAGCATAGAGAGGAGATTTT
GTGGCTGCACCAGGCCAGCACCTCTCCTCCGCCGGTAGGTCACCACCCTCCTCCTCCACCACCAGTCCCATCGGTGTGGT
AGCGTGGAAAATCGGGAAGGCCTGTATTTATCGGATGGAGCTCTTGTTTTTCACACCTAGGGGCCTTTAGGCCTTGTATA
ATGGAAGGTGCTTAGAGAGGTGCTTAAAAAAATAAACCGAGTTTTTCTGAAGCACATGTGCCTATTTCTATAGGAGAGAC
GGTTAGTTAAGCGTCTATCCTGTAGAAATAAGTACCGGTGCTTAAGAAAAGCCTGGTTTATTTTTCTAAACACCTCCCCT
AAGCATCTTTCATTGTACAAGGCCTTAGTATGGTTATGGTGGCGTTTTGTTGATGTGGCTGCAATGCAGGTTTGGCGAAT
GTAGTTCCGTCGAGTCTCCCGTTTTGACGGTTGATGGTGTCGATGACTTATTGACATAAGCTCTGATGATTTTTTTTGCC
CTATGAGGTTATGGTTTGTAGGGTTTGTCAGTGTGGCGATGGCGGTGACGGTGGCTTCCTTTTGTAATTTGATCCTCTAG
ACTCCCTTCCTTCACGATGGTGCGATGATGCCGCGGAATGCCCTTGAGCTCTTTTTGGATGATGAGATCTTAGATCCTTC
ACGATGTAGCTTCAATGTTTTCCCCCGACAACATTAGTCCAATAGGACCATGGTGTCGGTGACTACATGTGTCGATCAAC
AACGACTGACTAGCTTCAACGATGAATAGGCAACATTGACGGTGCGCCATCGACTCATTTGGGTAAAGCAAATGTTCAGC
TAGAGGGACCTCGTAATACTACCGGTTTTATCACAAGGGCAAACGTCCATCATCATGGGCAGATCTAGGAGGTTGCTATG
GGTGTCATGGCACCCCTATGAAAACGAGAAAAAATATACTTCTTTTGTGTAATTTTTGGACTATTTGTTGGATTTACTAT
GACATTTAGACACAATCATACTACCTTTGTGTAATTTCTCTAAAACTTTTACCTATGTGTTGATATTTGGCACCACTAGC
AATTTGCTCGTAGGTCCGCCACTGTCAATCATTCAATGTTAAATGGAGGGTTCTACTCTCTCCGTAACAAAAGTGTAAGA
GGCAGTGTTTTTTTGGTAATCCCAACCCTCCTCATGGAGTGCCAACTCTTAATTTTGTTGGAAGTTGTGTCTTTAAAACT
ATGTCTGTGTCTATTAGTTTGGCCGTTTGAGGAACTTGAGGGAGTATAAATCAAAGTAATCATGATGGAAGCAAACATCA
TGTACGGTGTGTTAAGGATTGCTTCTTCAAAATCAAAAT-----------------------------------------
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----------------------------------CCTAGTTTCTCGTGTTTATTTACTTGTGTTTTTTAAGCTAGTCATA
GTGGTAGTAATTTAGCTAGTAACATAGCGTACTTCAAAATTTTTTTGCTTATATGGCATGTAGTTAATAAGAAGTAGTAA
CATGATATGTTACTGTAACATAGCGATTTCCAAGACAAAATGAGTCTATAAATTAATAAATGAAGTCTCTCTATGACACT
AATGCTATGTTACTTTGCACCATAAAGATAATAATTTAGACTAGTGTCGTATGCATGACACTAGTATAAGTTACTCCTCG
CTATGACCGGCCTTAGAAAAATGGGTGTGTATG-AGCCGTGATTTTGGCATGTCTTCTGTAAACT---------------
------------CACAACACCAGGAAAAAGAGTATGCCAT----TGCCATACGACCCGGCTCCTCTGCCAACGTGTACAG
AGGAAGCAAGGCAGGCGTCCACGTCATGCCATGCCACGTGGCGGAGCTAGCCAGCCAGACCGCGCCCCCATTTGCGCGCG
CGCCGACGCCATGACCAAACCATAAAA-GACCACAAGCCCCACATTTGAGCTCCGAAACTCCACACCACACCACACCACG
GCACCACAAGCCACAGCTTCTTTGCAATGCCCAACCCGCCCACCCCCTCCTCGCCGTCGCCGCTCCCGGCCCCGGCGCGC
AAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTGCTCGCGTCCCCGAAGCCGTCGTCTGCTCCCACCTCCTCGTCCTCGTC
GGCCTCGTCGGCGTCGTCTTCCTCCGCCTCCTTCTCCTTCGCCCCCTTCTCCCCGGCGCCCTCGCCGTTCCACCACCGCT
TCCTCTCCCCGCTCCGTGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCCGGCATCCCCAAGACCCCCGCGCGCGGC
GCCGGCGCCCGCAGCAAGTCCGGCGCCCCGTCGCCGCTGCCCCTCCCGCCGTCGCTCTTCTCCAACAACAAGGTGGTCGC
CGAGTACTCCTTCGGCGCCGACGGGGCCTACTCCGTCGTCCCCGCGAAGGCGAGGAGGCGCAAGCAGCAGCGGCGGTGGC
CGGCGGTGACCGACGCCCTGACCGAGTGGCTGGCCGTGCTGAGCCTCTACCGGTCGTGCACGAGGTCGCGCGACTCCCTC
GCCGCCTCAGGCCCGCCGCCGCACCCGCGCCGGTGCTCGCCCTAGGCCTGGCCGGCGAGCCGGCCGGCATCGACCAATAC
GTAACGTACGTAGAGAGTCGGTGTGCGTGTGCCCGTATTGTCTGTCCTTCC--------TTTACTTTTTCTTGGGTGTGT
GGGTTGTGTTGAGTGCGTGCGTACGTACGTATACGTTCGGTGGTGCCCGATCGTAGCAC--CGCCGATGAATTAGGAATG
TGCTTGCGAATTTGGTGACATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCGGTATGTGCATGTGCTTGCTC-----
---CAATAATTAATGGATAATTCGGCACGATTGATTGATTTTTAGTACTATTAGGCCAGTTGT-GATTAAACGAGTA---
-TTTTATTGTTGGTTAAAGGATTCAATAATGTTAGTTTTACACTTGGCATTATTACATGCATGTGGGTGGTGCACTGCTG
AGGATGGATGTCTTCTGCAGTTTCTCTTTTCCAGAAAATGTGCTACGAGTACGCTATATTTGTGATTTGTTAGATTGCAT
GCACTATCACGGTCAAGTGGGGCACGACTGTTGCAAGCACGATATGATTGTCGAGGATATGTTGCTATA-----------
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>chr2B_652
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---------------------------------------TTTCTCGTGTTTACTTAGTTATGTTTT--------------
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------------TTAGAAAAATGGGTGCGTATAAAGCCGTGAATTTGGCACGTCCTCAGTAAACTGATTTCTGGCTAATC
ATACCAATTCAGCACAACACCAGGAAAAGGAGTACTCCTACGACTGCCATTCGACCCGGGCCCTCTGCCAACGTGTACAG
AGGAAGCAGGGCAGGCGTCCACGTCATGTCATGCCACGTGGCGGAGCTAGCCAGCCAGACCGCGCCCCCATTTGCGCGCG
CGCCGACGCCATGACCCAACCATAAAAAGACCACAAGCCCCACACTTGAGCTCCGAAACT-----CCACACCACACCACG
GCACCACAAGCCACAGCTTA---GCAATGCCCAACCCGCCCACCCCCTCCTCGCCGTCGCCGCTCCCGGCCCCGGCGCGC
AAATCTCCGTCCAGCCGCCGGCGCCAGCGCCTGCTCGCGTCCCCGAAGCCGTCGCCCGCTCCCACCTCCTCGTCCTCGTC
GGCGTCGTCGGCGTCGTCTTCCTCCGCGTCCTTCTCCTTCGCCCCCTTCTCGCCGGCGCCCTCGCCGTTCCACCACCGCT
TCCTCTCCCCGCTCCGTGCCTCCGCGGTGCCCTTCTCCTGGGAGCACCGGCCTGGCATCCCCAGGACCCCCGCGCGCGGC
GCCGGCACCCGCAGCAAGTCCGGTGCC---CCGCCGCTGCCCCTCCCGCCGTCGCTCTTCTCCAACAACAAGGTGGTCGC
CGAGTACTCCTTCGGCGCCGACGGCGCGTACTCCGTCGTTCCCACGAAGGCGAGGAGGCGCAAGCAGCAGCGGCGGTGGC
CAGCGGTGACCGACGCCCTGACAGAGTGGCTGGCCGTGCTGAGCCTCTACCGGTCGTGCACGAGGTCGCGCGACTCCCTC
GCCGCCTCAGGCCCGCCACCGCACCCGCGCCGGTGCTCGCCCTAGGCCTGGCCGGCGA----GCCGGCATCGACCAATAC
GTA-----CGTAGAGTGTTGGTGTGCGTGTTCCCCGTAT---TGTCCTTCC--------TTT-CTTTTTCTTGGGTGTGT
GGGTTGTGTTGAGTGCGTACGTA----CGTATACGTTCGTTGGTGCCCGATCGTAGTAC--CACCGATGAATTAGGAATG
TGCTTGCGAATTTGGTGACATGACGCTGTAATTAAGGGTGTCTTTTCGTGTGTCGGTATATGCATGTGCTGTGCTTGCTC
CAACAATAATTAATGGATAATTCGGCACGATTGATTGATT------------AGGCTGCTTGTTGATTAGTACAAGATTT
TTTTTATTGTTGGTTAAAGGATTCAATAATGTCAGTGTTACACTTGACATTATTACATGCATGTGGGTGGTGCAGTGCTC
---ATGCATGTCTTCTGCAGTTTCTCTTTTCCAGAAAATGTGCTACGATCACGCTATATCTGTGATTTATTAGATTGCAT
GCACTGTCACGGTCAAGTGGGCCACGACTGTTGCAAGCACGATATGATTATCGAGGACATGTTACTATATTA--------
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>SNPs
SSSSSSSSSSSS----SS--S---------SS-----S-----------------------------S---S--------
-----------------------S--S--S------------------S----S----------------S---S-----
------------S-----------------------------------------S----------------------S--
--S---------------------S----SSS------------------------------------------------
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----------------------------------------------------------------------SS-------S
S---S--S--------------SS------S-----S----S-S-----------S------S----S------------
---S----------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S--------------
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------------S------------------------S-------------------------S--S--------S----
S-S-----------------S-----------------------------------------------------------
------------------------------------------------------S-------------------------
----------------------------------------------S---------------------------------
---------S------------------------------S---------------------------------------
--------------------------------S---S-------------------------------------------
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----------------S---------------------------------------------------------------
---S---------S------------------------S-----------------------------------------
------------------------------------------S--------S----S-----------------------
----------------------------------S---------------------------------------------
--------S---------------------------------------S---------------------------S---
---------------------------------------------------SSSSSSSS----S---S------------
--------------S--------------------------------------------SS-------------------
-----------------S--------------------------------------------------------------
-------------------------------------------------S-----------------------SS-----
------------------------------------------------------------------------------S-
-------------S------------------------------------------------S-----------------
--S-----------------------------S---------------------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1640
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--------------------GGCAGATCACAGGTCGACAA----------------------------------------
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>reverse_3028
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-------------------------------------------------------------------CTCTTGGGTGTGT
GGGTTGT-------------------------------------------------------------------------
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