Multiple sequence alignment - TraesCS2D01G292000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G292000 chr2D 100.000 3225 0 0 1 3225 373904547 373901323 0.000000e+00 5956.0
1 TraesCS2D01G292000 chr2D 100.000 36 0 0 52 87 79056196 79056161 2.080000e-07 67.6
2 TraesCS2D01G292000 chr2B 95.346 2600 87 14 320 2897 443826019 443823432 0.000000e+00 4100.0
3 TraesCS2D01G292000 chr2B 90.365 301 14 5 1 301 443826288 443826003 6.530000e-102 381.0
4 TraesCS2D01G292000 chr2B 93.171 205 11 2 3023 3225 443801351 443801148 6.760000e-77 298.0
5 TraesCS2D01G292000 chr2B 98.095 105 2 0 2886 2990 443813194 443813090 1.980000e-42 183.0
6 TraesCS2D01G292000 chr2B 93.478 46 3 0 52 97 122742459 122742414 5.770000e-08 69.4
7 TraesCS2D01G292000 chrUn 96.353 2413 62 8 386 2778 300433451 300431045 0.000000e+00 3945.0
8 TraesCS2D01G292000 chrUn 93.658 473 11 7 2772 3225 308098815 308099287 0.000000e+00 689.0
9 TraesCS2D01G292000 chrUn 94.253 174 8 1 128 301 300433641 300433470 6.860000e-67 265.0
10 TraesCS2D01G292000 chrUn 96.992 133 4 0 1 133 300433965 300433833 1.160000e-54 224.0
11 TraesCS2D01G292000 chrUn 97.297 37 1 0 320 356 300433486 300433450 2.690000e-06 63.9
12 TraesCS2D01G292000 chr4A 79.866 1048 136 43 1107 2120 681790106 681791112 0.000000e+00 697.0
13 TraesCS2D01G292000 chr4A 91.489 47 3 1 5 50 652197411 652197365 2.690000e-06 63.9
14 TraesCS2D01G292000 chr4B 87.855 387 40 5 1112 1493 597742392 597742008 6.350000e-122 448.0
15 TraesCS2D01G292000 chr4B 81.360 456 43 22 1676 2110 597741878 597741444 1.850000e-87 333.0
16 TraesCS2D01G292000 chr4D 87.080 387 44 4 1112 1493 474378018 474377633 1.780000e-117 433.0
17 TraesCS2D01G292000 chr4D 81.836 512 51 22 1619 2110 474377562 474377073 3.020000e-105 392.0
18 TraesCS2D01G292000 chr4D 74.869 382 52 26 2819 3169 474376500 474376132 2.020000e-27 134.0
19 TraesCS2D01G292000 chr2A 95.122 41 1 1 42 81 456747353 456747313 2.690000e-06 63.9
20 TraesCS2D01G292000 chr7D 92.857 42 3 0 49 90 56643770 56643811 9.660000e-06 62.1
21 TraesCS2D01G292000 chr3D 94.872 39 2 0 52 90 610340230 610340192 9.660000e-06 62.1
22 TraesCS2D01G292000 chr3B 84.615 65 4 5 52 114 94499347 94499287 3.470000e-05 60.2
23 TraesCS2D01G292000 chr1B 100.000 30 0 0 52 81 673783203 673783174 4.490000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G292000 chr2D 373901323 373904547 3224 True 5956.000000 5956 100.000000 1 3225 1 chr2D.!!$R2 3224
1 TraesCS2D01G292000 chr2B 443823432 443826288 2856 True 2240.500000 4100 92.855500 1 2897 2 chr2B.!!$R4 2896
2 TraesCS2D01G292000 chrUn 300431045 300433965 2920 True 1124.475000 3945 96.223750 1 2778 4 chrUn.!!$R1 2777
3 TraesCS2D01G292000 chr4A 681790106 681791112 1006 False 697.000000 697 79.866000 1107 2120 1 chr4A.!!$F1 1013
4 TraesCS2D01G292000 chr4B 597741444 597742392 948 True 390.500000 448 84.607500 1112 2110 2 chr4B.!!$R1 998
5 TraesCS2D01G292000 chr4D 474376132 474378018 1886 True 319.666667 433 81.261667 1112 3169 3 chr4D.!!$R1 2057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 485 0.681733 TCTCCCTGCACTGAACTCAC 59.318 55.0 0.0 0.0 0.0 3.51 F
288 486 0.683973 CTCCCTGCACTGAACTCACT 59.316 55.0 0.0 0.0 0.0 3.41 F
1280 1486 0.821301 TGTCCAAGCCACGCATTGAA 60.821 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 1536 0.178909 ATGAGATGGCCGGAGAGGAT 60.179 55.0 5.05 0.0 45.00 3.24 R
2127 2421 1.101331 GCATGCAAGAGAAGAAGGGG 58.899 55.0 14.21 0.0 0.00 4.79 R
3079 3526 0.039256 TGTACGTTCCGTGCTACCAC 60.039 55.0 0.00 0.0 42.49 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.787532 TGAACTGCAAAAACATCTTATATTAGC 57.212 29.630 0.00 0.00 0.00 3.09
141 339 2.684881 CAAGCCCAACAAGAGCGAATAT 59.315 45.455 0.00 0.00 0.00 1.28
160 358 6.292061 CGAATATGAGCAAACTAGAGACAAGC 60.292 42.308 0.00 0.00 0.00 4.01
238 436 0.960364 GTTCTCCCTGCCGCAATCAA 60.960 55.000 0.00 0.00 0.00 2.57
240 438 1.377725 CTCCCTGCCGCAATCAAGT 60.378 57.895 0.00 0.00 0.00 3.16
241 439 0.962356 CTCCCTGCCGCAATCAAGTT 60.962 55.000 0.00 0.00 0.00 2.66
263 461 1.449246 GAGCGCAGAGTTGGAGCAT 60.449 57.895 11.47 0.00 33.20 3.79
277 475 1.627329 GGAGCATCATATCTCCCTGCA 59.373 52.381 0.00 0.00 42.30 4.41
281 479 2.038164 GCATCATATCTCCCTGCACTGA 59.962 50.000 0.00 0.00 33.13 3.41
284 482 3.378512 TCATATCTCCCTGCACTGAACT 58.621 45.455 0.00 0.00 0.00 3.01
285 483 3.386078 TCATATCTCCCTGCACTGAACTC 59.614 47.826 0.00 0.00 0.00 3.01
286 484 1.649321 ATCTCCCTGCACTGAACTCA 58.351 50.000 0.00 0.00 0.00 3.41
287 485 0.681733 TCTCCCTGCACTGAACTCAC 59.318 55.000 0.00 0.00 0.00 3.51
288 486 0.683973 CTCCCTGCACTGAACTCACT 59.316 55.000 0.00 0.00 0.00 3.41
289 487 1.895798 CTCCCTGCACTGAACTCACTA 59.104 52.381 0.00 0.00 0.00 2.74
290 488 1.618837 TCCCTGCACTGAACTCACTAC 59.381 52.381 0.00 0.00 0.00 2.73
291 489 1.620819 CCCTGCACTGAACTCACTACT 59.379 52.381 0.00 0.00 0.00 2.57
292 490 2.611473 CCCTGCACTGAACTCACTACTG 60.611 54.545 0.00 0.00 0.00 2.74
293 491 2.064762 CTGCACTGAACTCACTACTGC 58.935 52.381 0.00 0.00 0.00 4.40
294 492 1.063806 GCACTGAACTCACTACTGCG 58.936 55.000 0.00 0.00 0.00 5.18
295 493 1.063806 CACTGAACTCACTACTGCGC 58.936 55.000 0.00 0.00 0.00 6.09
296 494 0.962489 ACTGAACTCACTACTGCGCT 59.038 50.000 9.73 0.00 0.00 5.92
297 495 1.341531 ACTGAACTCACTACTGCGCTT 59.658 47.619 9.73 0.00 0.00 4.68
298 496 2.224066 ACTGAACTCACTACTGCGCTTT 60.224 45.455 9.73 0.00 0.00 3.51
299 497 2.404215 TGAACTCACTACTGCGCTTTC 58.596 47.619 9.73 0.00 0.00 2.62
300 498 2.035961 TGAACTCACTACTGCGCTTTCT 59.964 45.455 9.73 0.00 0.00 2.52
301 499 2.821991 ACTCACTACTGCGCTTTCTT 57.178 45.000 9.73 0.00 0.00 2.52
302 500 2.678324 ACTCACTACTGCGCTTTCTTC 58.322 47.619 9.73 0.00 0.00 2.87
303 501 2.297597 ACTCACTACTGCGCTTTCTTCT 59.702 45.455 9.73 0.00 0.00 2.85
304 502 3.243907 ACTCACTACTGCGCTTTCTTCTT 60.244 43.478 9.73 0.00 0.00 2.52
305 503 3.318017 TCACTACTGCGCTTTCTTCTTC 58.682 45.455 9.73 0.00 0.00 2.87
306 504 3.005897 TCACTACTGCGCTTTCTTCTTCT 59.994 43.478 9.73 0.00 0.00 2.85
307 505 3.743396 CACTACTGCGCTTTCTTCTTCTT 59.257 43.478 9.73 0.00 0.00 2.52
308 506 3.991121 ACTACTGCGCTTTCTTCTTCTTC 59.009 43.478 9.73 0.00 0.00 2.87
309 507 3.118905 ACTGCGCTTTCTTCTTCTTCT 57.881 42.857 9.73 0.00 0.00 2.85
310 508 3.471680 ACTGCGCTTTCTTCTTCTTCTT 58.528 40.909 9.73 0.00 0.00 2.52
311 509 3.879892 ACTGCGCTTTCTTCTTCTTCTTT 59.120 39.130 9.73 0.00 0.00 2.52
312 510 4.336713 ACTGCGCTTTCTTCTTCTTCTTTT 59.663 37.500 9.73 0.00 0.00 2.27
313 511 5.163612 ACTGCGCTTTCTTCTTCTTCTTTTT 60.164 36.000 9.73 0.00 0.00 1.94
314 512 5.036737 TGCGCTTTCTTCTTCTTCTTTTTG 58.963 37.500 9.73 0.00 0.00 2.44
315 513 4.085363 GCGCTTTCTTCTTCTTCTTTTTGC 60.085 41.667 0.00 0.00 0.00 3.68
316 514 4.145414 CGCTTTCTTCTTCTTCTTTTTGCG 59.855 41.667 0.00 0.00 0.00 4.85
317 515 4.442403 GCTTTCTTCTTCTTCTTTTTGCGG 59.558 41.667 0.00 0.00 0.00 5.69
318 516 4.568152 TTCTTCTTCTTCTTTTTGCGGG 57.432 40.909 0.00 0.00 0.00 6.13
349 547 8.383318 ACTGCGCTTTCTCATAATATAATTGT 57.617 30.769 9.73 0.00 0.00 2.71
434 632 8.292444 TCCAAATACATATTCTTTTGACTGGG 57.708 34.615 0.00 0.00 32.17 4.45
627 832 4.576463 CAGTGTGGCTTCTAATAATGTCCC 59.424 45.833 0.00 0.00 0.00 4.46
780 985 8.227791 TGCATTATTAACTCGAACAAACTTCTC 58.772 33.333 0.00 0.00 0.00 2.87
981 1186 4.528596 TCCACAGCTATAAATAGAGCCTCC 59.471 45.833 3.58 0.00 41.23 4.30
1013 1218 0.883833 CTCAACACCAACCATCAGGC 59.116 55.000 0.00 0.00 39.06 4.85
1068 1274 3.007398 GCTACCTGCAGGCTGTAGATATT 59.993 47.826 33.06 11.54 42.31 1.28
1140 1346 3.005539 GGGTGCTGGAGCCTCTCA 61.006 66.667 10.36 0.00 39.39 3.27
1143 1349 1.620739 GGTGCTGGAGCCTCTCATCA 61.621 60.000 0.00 0.00 41.18 3.07
1184 1390 2.489971 GTCATCGACAACTTCAACCCA 58.510 47.619 0.00 0.00 32.09 4.51
1280 1486 0.821301 TGTCCAAGCCACGCATTGAA 60.821 50.000 0.00 0.00 0.00 2.69
1292 1498 0.967380 GCATTGAAGTCCAGGGTGGG 60.967 60.000 0.00 0.00 38.32 4.61
1330 1536 1.192146 ACTCTGGTTTGCGCCTCCTA 61.192 55.000 4.18 0.00 0.00 2.94
1389 1602 6.049149 GCTAGTGTAACATCCAGCTGATAAA 58.951 40.000 17.39 0.00 41.43 1.40
1747 2011 8.861033 GCATAAAAACATGCTTGATCAGATTA 57.139 30.769 6.60 0.00 46.35 1.75
1865 2146 5.208121 TGATTGGTCCCATCCTTAATTTCC 58.792 41.667 0.58 0.00 0.00 3.13
2019 2313 2.104111 CACCAGGGACTACTTCAACACA 59.896 50.000 0.00 0.00 36.02 3.72
2127 2421 0.521735 GACGGAAACAATCAGCCCAC 59.478 55.000 0.00 0.00 0.00 4.61
2252 2551 0.108377 TGTGAGCGTCTTGTGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
2535 2869 5.843019 AGTGGAAGGAGGAAAAGACAATA 57.157 39.130 0.00 0.00 0.00 1.90
2621 2996 1.814586 CTGCTAGCTCACTGCAGCC 60.815 63.158 15.27 0.00 45.76 4.85
2654 3029 1.206132 TGTACCAGCTTGTACCCGATG 59.794 52.381 21.69 0.00 40.29 3.84
2656 3031 1.078497 CCAGCTTGTACCCGATGCA 60.078 57.895 0.00 0.00 0.00 3.96
2657 3032 1.091771 CCAGCTTGTACCCGATGCAG 61.092 60.000 0.00 0.00 0.00 4.41
2661 3036 1.933853 GCTTGTACCCGATGCAGTAAG 59.066 52.381 0.00 0.00 0.00 2.34
2679 3058 2.698855 AGCCTGCTATGTAGGTTGTG 57.301 50.000 3.83 0.00 37.73 3.33
2703 3082 3.368220 CCATTATCTCTCCATCTGCTCCG 60.368 52.174 0.00 0.00 0.00 4.63
2705 3084 1.327303 ATCTCTCCATCTGCTCCGAC 58.673 55.000 0.00 0.00 0.00 4.79
2774 3172 9.378551 GATTGTGTGTAATATGTTAGGTCTTGA 57.621 33.333 0.00 0.00 0.00 3.02
2794 3192 1.203994 ACGTATCTACTGTGTGTGGGC 59.796 52.381 0.00 0.00 0.00 5.36
2796 3194 1.475280 GTATCTACTGTGTGTGGGCGA 59.525 52.381 0.00 0.00 0.00 5.54
2897 3312 6.406400 CCCTTTTGGTCGATTTGGCAATATTA 60.406 38.462 0.00 0.00 38.10 0.98
2913 3328 8.843262 TGGCAATATTAGATCATTAGCATATGC 58.157 33.333 20.36 20.36 42.49 3.14
2935 3362 5.163693 TGCGCCTAAGCCTTAATTAAGTTTC 60.164 40.000 20.99 11.33 36.02 2.78
2937 3364 6.716438 CGCCTAAGCCTTAATTAAGTTTCTC 58.284 40.000 20.99 7.28 34.57 2.87
2938 3365 6.509677 CGCCTAAGCCTTAATTAAGTTTCTCG 60.510 42.308 20.99 14.36 34.57 4.04
2939 3366 6.315642 GCCTAAGCCTTAATTAAGTTTCTCGT 59.684 38.462 20.99 7.87 0.00 4.18
2949 3376 9.985730 TTAATTAAGTTTCTCGTACTTTCTGGA 57.014 29.630 0.00 0.00 37.12 3.86
2962 3393 5.736951 ACTTTCTGGATATGCCTAGCTAG 57.263 43.478 14.20 14.20 37.63 3.42
2963 3394 5.151454 ACTTTCTGGATATGCCTAGCTAGT 58.849 41.667 19.31 3.84 37.63 2.57
2964 3395 5.604650 ACTTTCTGGATATGCCTAGCTAGTT 59.395 40.000 19.31 6.66 37.63 2.24
2968 3403 8.895141 TTCTGGATATGCCTAGCTAGTTTATA 57.105 34.615 19.31 13.73 37.63 0.98
2977 3412 8.662781 TGCCTAGCTAGTTTATACATGAAAAG 57.337 34.615 19.31 0.00 0.00 2.27
2978 3413 7.715249 TGCCTAGCTAGTTTATACATGAAAAGG 59.285 37.037 19.31 1.49 0.00 3.11
3019 3455 8.615878 TGGCCATAATATCTAACATGTACAAC 57.384 34.615 0.00 0.00 0.00 3.32
3021 3457 8.504005 GGCCATAATATCTAACATGTACAACAC 58.496 37.037 0.00 0.00 0.00 3.32
3022 3458 8.221100 GCCATAATATCTAACATGTACAACACG 58.779 37.037 0.00 0.00 0.00 4.49
3023 3459 8.708742 CCATAATATCTAACATGTACAACACGG 58.291 37.037 0.00 0.00 0.00 4.94
3024 3460 9.256477 CATAATATCTAACATGTACAACACGGT 57.744 33.333 0.00 0.00 0.00 4.83
3025 3461 9.826574 ATAATATCTAACATGTACAACACGGTT 57.173 29.630 0.00 2.84 34.61 4.44
3026 3462 7.766219 ATATCTAACATGTACAACACGGTTC 57.234 36.000 0.00 0.00 33.10 3.62
3027 3463 4.946445 TCTAACATGTACAACACGGTTCA 58.054 39.130 0.00 0.00 33.10 3.18
3028 3464 5.543714 TCTAACATGTACAACACGGTTCAT 58.456 37.500 0.00 0.00 33.10 2.57
3029 3465 6.689554 TCTAACATGTACAACACGGTTCATA 58.310 36.000 0.00 0.00 33.10 2.15
3031 3467 8.468399 TCTAACATGTACAACACGGTTCATATA 58.532 33.333 0.00 0.00 33.10 0.86
3032 3468 9.256477 CTAACATGTACAACACGGTTCATATAT 57.744 33.333 0.00 0.00 33.10 0.86
3037 3473 8.637281 TGTACAACACGGTTCATATATACAAG 57.363 34.615 0.00 0.00 0.00 3.16
3039 3475 6.110033 ACAACACGGTTCATATATACAAGCA 58.890 36.000 6.37 0.00 0.00 3.91
3040 3476 6.765989 ACAACACGGTTCATATATACAAGCAT 59.234 34.615 6.37 0.00 0.00 3.79
3041 3477 7.929245 ACAACACGGTTCATATATACAAGCATA 59.071 33.333 6.37 0.00 0.00 3.14
3042 3478 7.884816 ACACGGTTCATATATACAAGCATAC 57.115 36.000 6.37 0.00 0.00 2.39
3043 3479 6.872020 ACACGGTTCATATATACAAGCATACC 59.128 38.462 6.37 0.00 0.00 2.73
3044 3480 6.871492 CACGGTTCATATATACAAGCATACCA 59.129 38.462 0.00 0.00 0.00 3.25
3045 3481 6.872020 ACGGTTCATATATACAAGCATACCAC 59.128 38.462 0.00 0.00 0.00 4.16
3046 3482 6.871492 CGGTTCATATATACAAGCATACCACA 59.129 38.462 0.00 0.00 0.00 4.17
3047 3483 7.386573 CGGTTCATATATACAAGCATACCACAA 59.613 37.037 0.00 0.00 0.00 3.33
3068 3515 6.142161 CACAATGGTTACGACAATCAACAAAG 59.858 38.462 0.00 0.00 0.00 2.77
3074 3521 4.749245 ACGACAATCAACAAAGATGGAC 57.251 40.909 0.00 0.00 0.00 4.02
3075 3522 4.133820 ACGACAATCAACAAAGATGGACA 58.866 39.130 0.00 0.00 0.00 4.02
3076 3523 4.578516 ACGACAATCAACAAAGATGGACAA 59.421 37.500 0.00 0.00 0.00 3.18
3077 3524 5.067153 ACGACAATCAACAAAGATGGACAAA 59.933 36.000 0.00 0.00 0.00 2.83
3078 3525 5.976534 CGACAATCAACAAAGATGGACAAAA 59.023 36.000 0.00 0.00 0.00 2.44
3079 3526 6.142798 CGACAATCAACAAAGATGGACAAAAG 59.857 38.462 0.00 0.00 0.00 2.27
3080 3527 6.877236 ACAATCAACAAAGATGGACAAAAGT 58.123 32.000 0.00 0.00 0.00 2.66
3081 3528 6.757947 ACAATCAACAAAGATGGACAAAAGTG 59.242 34.615 0.00 0.00 0.00 3.16
3082 3529 5.261209 TCAACAAAGATGGACAAAAGTGG 57.739 39.130 0.00 0.00 0.00 4.00
3083 3530 4.709397 TCAACAAAGATGGACAAAAGTGGT 59.291 37.500 0.00 0.00 0.00 4.16
3084 3531 5.888724 TCAACAAAGATGGACAAAAGTGGTA 59.111 36.000 0.00 0.00 0.00 3.25
3085 3532 6.039270 TCAACAAAGATGGACAAAAGTGGTAG 59.961 38.462 0.00 0.00 0.00 3.18
3086 3533 4.278419 ACAAAGATGGACAAAAGTGGTAGC 59.722 41.667 0.00 0.00 0.00 3.58
3087 3534 3.788227 AGATGGACAAAAGTGGTAGCA 57.212 42.857 0.00 0.00 0.00 3.49
3088 3535 3.412386 AGATGGACAAAAGTGGTAGCAC 58.588 45.455 17.29 17.29 0.00 4.40
3089 3536 1.588674 TGGACAAAAGTGGTAGCACG 58.411 50.000 18.73 7.68 0.00 5.34
3090 3537 0.872388 GGACAAAAGTGGTAGCACGG 59.128 55.000 18.73 12.24 0.00 4.94
3091 3538 1.541670 GGACAAAAGTGGTAGCACGGA 60.542 52.381 18.73 0.00 0.00 4.69
3092 3539 2.215196 GACAAAAGTGGTAGCACGGAA 58.785 47.619 18.73 0.00 0.00 4.30
3093 3540 1.944709 ACAAAAGTGGTAGCACGGAAC 59.055 47.619 18.73 0.00 0.00 3.62
3116 3563 7.320443 ACGTACAAGTAGTTATAACGGATGA 57.680 36.000 9.91 0.00 33.44 2.92
3117 3564 7.761409 ACGTACAAGTAGTTATAACGGATGAA 58.239 34.615 9.91 0.00 33.44 2.57
3118 3565 8.408601 ACGTACAAGTAGTTATAACGGATGAAT 58.591 33.333 9.91 0.00 33.44 2.57
3130 3577 5.499139 AACGGATGAATCAATTACGCAAT 57.501 34.783 0.00 0.00 0.00 3.56
3132 3579 4.221342 CGGATGAATCAATTACGCAATGG 58.779 43.478 0.00 0.00 0.00 3.16
3194 3641 7.712797 ACCAAAAGTTTAAATGTACTCACAGG 58.287 34.615 0.00 0.00 38.30 4.00
3195 3642 7.145323 CCAAAAGTTTAAATGTACTCACAGGG 58.855 38.462 0.00 0.00 38.30 4.45
3196 3643 7.201875 CCAAAAGTTTAAATGTACTCACAGGGT 60.202 37.037 0.00 0.00 38.30 4.34
3197 3644 8.842280 CAAAAGTTTAAATGTACTCACAGGGTA 58.158 33.333 0.00 0.00 38.30 3.69
3198 3645 8.983702 AAAGTTTAAATGTACTCACAGGGTAA 57.016 30.769 0.00 0.00 38.30 2.85
3199 3646 8.983702 AAGTTTAAATGTACTCACAGGGTAAA 57.016 30.769 0.00 0.00 38.30 2.01
3200 3647 8.983702 AGTTTAAATGTACTCACAGGGTAAAA 57.016 30.769 0.00 0.00 38.30 1.52
3201 3648 9.582648 AGTTTAAATGTACTCACAGGGTAAAAT 57.417 29.630 0.00 0.00 38.30 1.82
3202 3649 9.620660 GTTTAAATGTACTCACAGGGTAAAATG 57.379 33.333 0.00 0.00 38.30 2.32
3203 3650 6.834168 AAATGTACTCACAGGGTAAAATGG 57.166 37.500 0.00 0.00 38.30 3.16
3204 3651 4.986054 TGTACTCACAGGGTAAAATGGT 57.014 40.909 0.00 0.00 0.00 3.55
3205 3652 4.901868 TGTACTCACAGGGTAAAATGGTC 58.098 43.478 0.00 0.00 0.00 4.02
3206 3653 4.348461 TGTACTCACAGGGTAAAATGGTCA 59.652 41.667 0.00 0.00 0.00 4.02
3207 3654 4.657814 ACTCACAGGGTAAAATGGTCAT 57.342 40.909 0.00 0.00 0.00 3.06
3208 3655 4.998051 ACTCACAGGGTAAAATGGTCATT 58.002 39.130 0.00 0.00 0.00 2.57
3209 3656 5.010282 ACTCACAGGGTAAAATGGTCATTC 58.990 41.667 0.00 0.00 0.00 2.67
3210 3657 4.991776 TCACAGGGTAAAATGGTCATTCA 58.008 39.130 0.00 0.00 0.00 2.57
3211 3658 4.764823 TCACAGGGTAAAATGGTCATTCAC 59.235 41.667 0.00 0.00 0.00 3.18
3212 3659 4.522405 CACAGGGTAAAATGGTCATTCACA 59.478 41.667 0.00 0.00 0.00 3.58
3213 3660 5.010516 CACAGGGTAAAATGGTCATTCACAA 59.989 40.000 0.00 0.00 0.00 3.33
3214 3661 5.243730 ACAGGGTAAAATGGTCATTCACAAG 59.756 40.000 0.00 0.00 0.00 3.16
3215 3662 4.772100 AGGGTAAAATGGTCATTCACAAGG 59.228 41.667 0.00 0.00 0.00 3.61
3216 3663 4.081697 GGGTAAAATGGTCATTCACAAGGG 60.082 45.833 0.00 0.00 0.00 3.95
3217 3664 3.683365 AAAATGGTCATTCACAAGGGC 57.317 42.857 0.00 0.00 0.00 5.19
3218 3665 1.176527 AATGGTCATTCACAAGGGCG 58.823 50.000 0.00 0.00 0.00 6.13
3219 3666 0.680921 ATGGTCATTCACAAGGGCGG 60.681 55.000 0.00 0.00 0.00 6.13
3220 3667 1.002624 GGTCATTCACAAGGGCGGA 60.003 57.895 0.00 0.00 0.00 5.54
3221 3668 1.026718 GGTCATTCACAAGGGCGGAG 61.027 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 339 3.181466 TGTGCTTGTCTCTAGTTTGCTCA 60.181 43.478 0.00 0.00 0.00 4.26
160 358 2.047844 CACTGGCGTCCCTCTGTG 60.048 66.667 0.00 0.00 0.00 3.66
238 436 1.334869 CCAACTCTGCGCTCAAAAACT 59.665 47.619 9.73 0.00 0.00 2.66
240 438 1.603802 CTCCAACTCTGCGCTCAAAAA 59.396 47.619 9.73 0.00 0.00 1.94
241 439 1.229428 CTCCAACTCTGCGCTCAAAA 58.771 50.000 9.73 0.00 0.00 2.44
263 461 3.378512 AGTTCAGTGCAGGGAGATATGA 58.621 45.455 0.00 0.00 0.00 2.15
277 475 0.962489 AGCGCAGTAGTGAGTTCAGT 59.038 50.000 11.47 0.00 0.00 3.41
281 479 2.821991 AGAAAGCGCAGTAGTGAGTT 57.178 45.000 11.47 0.00 0.00 3.01
284 482 3.005897 AGAAGAAGAAAGCGCAGTAGTGA 59.994 43.478 11.47 0.00 0.00 3.41
285 483 3.321497 AGAAGAAGAAAGCGCAGTAGTG 58.679 45.455 11.47 0.00 0.00 2.74
286 484 3.669251 AGAAGAAGAAAGCGCAGTAGT 57.331 42.857 11.47 0.00 0.00 2.73
287 485 4.241681 AGAAGAAGAAGAAAGCGCAGTAG 58.758 43.478 11.47 0.00 0.00 2.57
288 486 4.258702 AGAAGAAGAAGAAAGCGCAGTA 57.741 40.909 11.47 0.00 0.00 2.74
289 487 3.118905 AGAAGAAGAAGAAAGCGCAGT 57.881 42.857 11.47 0.00 0.00 4.40
290 488 4.480386 AAAGAAGAAGAAGAAAGCGCAG 57.520 40.909 11.47 0.00 0.00 5.18
291 489 4.900635 AAAAGAAGAAGAAGAAAGCGCA 57.099 36.364 11.47 0.00 0.00 6.09
292 490 4.085363 GCAAAAAGAAGAAGAAGAAAGCGC 60.085 41.667 0.00 0.00 0.00 5.92
293 491 4.145414 CGCAAAAAGAAGAAGAAGAAAGCG 59.855 41.667 0.00 0.00 0.00 4.68
294 492 4.442403 CCGCAAAAAGAAGAAGAAGAAAGC 59.558 41.667 0.00 0.00 0.00 3.51
295 493 4.978580 CCCGCAAAAAGAAGAAGAAGAAAG 59.021 41.667 0.00 0.00 0.00 2.62
296 494 4.401202 ACCCGCAAAAAGAAGAAGAAGAAA 59.599 37.500 0.00 0.00 0.00 2.52
297 495 3.951680 ACCCGCAAAAAGAAGAAGAAGAA 59.048 39.130 0.00 0.00 0.00 2.52
298 496 3.551846 ACCCGCAAAAAGAAGAAGAAGA 58.448 40.909 0.00 0.00 0.00 2.87
299 497 3.315191 TGACCCGCAAAAAGAAGAAGAAG 59.685 43.478 0.00 0.00 0.00 2.85
300 498 3.066203 GTGACCCGCAAAAAGAAGAAGAA 59.934 43.478 0.00 0.00 0.00 2.52
301 499 2.616842 GTGACCCGCAAAAAGAAGAAGA 59.383 45.455 0.00 0.00 0.00 2.87
302 500 2.618709 AGTGACCCGCAAAAAGAAGAAG 59.381 45.455 0.00 0.00 0.00 2.85
303 501 2.650322 AGTGACCCGCAAAAAGAAGAA 58.350 42.857 0.00 0.00 0.00 2.52
304 502 2.341846 AGTGACCCGCAAAAAGAAGA 57.658 45.000 0.00 0.00 0.00 2.87
305 503 3.058914 CAGTAGTGACCCGCAAAAAGAAG 60.059 47.826 0.00 0.00 0.00 2.85
306 504 2.875933 CAGTAGTGACCCGCAAAAAGAA 59.124 45.455 0.00 0.00 0.00 2.52
307 505 2.489971 CAGTAGTGACCCGCAAAAAGA 58.510 47.619 0.00 0.00 0.00 2.52
308 506 1.069227 GCAGTAGTGACCCGCAAAAAG 60.069 52.381 0.42 0.00 0.00 2.27
309 507 0.948678 GCAGTAGTGACCCGCAAAAA 59.051 50.000 0.42 0.00 0.00 1.94
310 508 1.225376 CGCAGTAGTGACCCGCAAAA 61.225 55.000 0.42 0.00 0.00 2.44
311 509 1.666553 CGCAGTAGTGACCCGCAAA 60.667 57.895 0.42 0.00 0.00 3.68
312 510 2.048597 CGCAGTAGTGACCCGCAA 60.049 61.111 0.42 0.00 0.00 4.85
313 511 4.735132 GCGCAGTAGTGACCCGCA 62.735 66.667 13.89 0.00 42.86 5.69
314 512 3.934391 AAGCGCAGTAGTGACCCGC 62.934 63.158 11.47 11.64 43.36 6.13
315 513 1.352156 GAAAGCGCAGTAGTGACCCG 61.352 60.000 11.47 0.00 0.00 5.28
316 514 0.037232 AGAAAGCGCAGTAGTGACCC 60.037 55.000 11.47 0.00 0.00 4.46
317 515 1.336887 TGAGAAAGCGCAGTAGTGACC 60.337 52.381 11.47 0.00 0.00 4.02
318 516 2.065993 TGAGAAAGCGCAGTAGTGAC 57.934 50.000 11.47 0.00 0.00 3.67
367 565 9.507280 CTGTACTGGAATATTTTTGCAATACTG 57.493 33.333 0.00 0.00 0.00 2.74
627 832 0.249073 AGTTCATCGATCCTTCCGCG 60.249 55.000 0.00 0.00 0.00 6.46
780 985 1.003812 TCGTGATAGGTGGGTTTTGGG 59.996 52.381 0.00 0.00 0.00 4.12
981 1186 2.203280 TTGAGGTTGGGTGGCGTG 60.203 61.111 0.00 0.00 0.00 5.34
1013 1218 5.106475 GCACGAGAGGAATGAGGTAGTATAG 60.106 48.000 0.00 0.00 0.00 1.31
1068 1274 4.206477 AGTTGGTGATGATCGATGACAA 57.794 40.909 0.54 0.00 0.00 3.18
1140 1346 2.423373 CCCCGATGACCTTTCCAATGAT 60.423 50.000 0.00 0.00 0.00 2.45
1143 1349 1.212935 CTCCCCGATGACCTTTCCAAT 59.787 52.381 0.00 0.00 0.00 3.16
1184 1390 2.548067 GGTCACCGTCATCTTCACTGTT 60.548 50.000 0.00 0.00 0.00 3.16
1292 1498 4.405358 AGAGTGAAGAAGGATCTCATGTCC 59.595 45.833 0.00 0.00 33.77 4.02
1330 1536 0.178909 ATGAGATGGCCGGAGAGGAT 60.179 55.000 5.05 0.00 45.00 3.24
1389 1602 2.611473 CCTGAAGAGCGACAACACTCAT 60.611 50.000 0.00 0.00 35.28 2.90
1747 2011 2.022195 GATCCTGCATGCACAAGTCAT 58.978 47.619 18.46 2.15 0.00 3.06
1865 2146 6.822073 CATGCATTCATGTGTTTATTCAGG 57.178 37.500 0.00 0.00 43.85 3.86
2127 2421 1.101331 GCATGCAAGAGAAGAAGGGG 58.899 55.000 14.21 0.00 0.00 4.79
2621 2996 3.126831 GCTGGTACACTGCAAGCTATAG 58.873 50.000 0.00 0.00 42.90 1.31
2656 3031 3.775316 ACAACCTACATAGCAGGCTTACT 59.225 43.478 0.00 0.00 36.57 2.24
2657 3032 3.871594 CACAACCTACATAGCAGGCTTAC 59.128 47.826 0.00 0.00 36.57 2.34
2661 3036 2.280628 GTCACAACCTACATAGCAGGC 58.719 52.381 0.00 0.00 36.57 4.85
2679 3058 4.322650 GGAGCAGATGGAGAGATAATGGTC 60.323 50.000 0.00 0.00 34.01 4.02
2703 3082 6.621596 GCATGTCTTGTCATACAGAAAAGGTC 60.622 42.308 0.00 0.00 41.21 3.85
2705 3084 5.181811 TGCATGTCTTGTCATACAGAAAAGG 59.818 40.000 0.00 0.00 41.21 3.11
2774 3172 1.203994 GCCCACACACAGTAGATACGT 59.796 52.381 0.00 0.00 0.00 3.57
2897 3312 3.623906 AGGCGCATATGCTAATGATCT 57.376 42.857 24.56 8.77 39.32 2.75
2912 3327 4.895224 AACTTAATTAAGGCTTAGGCGC 57.105 40.909 25.25 0.00 39.81 6.53
2913 3328 6.509677 CGAGAAACTTAATTAAGGCTTAGGCG 60.510 42.308 25.25 16.24 39.81 5.52
2914 3329 6.315642 ACGAGAAACTTAATTAAGGCTTAGGC 59.684 38.462 25.25 0.00 37.62 3.93
2915 3330 7.845066 ACGAGAAACTTAATTAAGGCTTAGG 57.155 36.000 25.25 14.21 37.62 2.69
2916 3331 9.583765 AGTACGAGAAACTTAATTAAGGCTTAG 57.416 33.333 25.25 17.97 37.62 2.18
2917 3332 9.933723 AAGTACGAGAAACTTAATTAAGGCTTA 57.066 29.630 25.25 2.04 35.44 3.09
2918 3333 8.843885 AAGTACGAGAAACTTAATTAAGGCTT 57.156 30.769 25.25 18.41 35.44 4.35
2919 3334 8.843885 AAAGTACGAGAAACTTAATTAAGGCT 57.156 30.769 25.25 19.09 36.17 4.58
2920 3335 8.933807 AGAAAGTACGAGAAACTTAATTAAGGC 58.066 33.333 25.25 15.49 36.17 4.35
2935 3362 4.592485 AGGCATATCCAGAAAGTACGAG 57.408 45.455 0.00 0.00 37.29 4.18
2937 3364 4.021894 AGCTAGGCATATCCAGAAAGTACG 60.022 45.833 0.00 0.00 37.29 3.67
2938 3365 5.476091 AGCTAGGCATATCCAGAAAGTAC 57.524 43.478 0.00 0.00 37.29 2.73
2939 3366 6.315714 ACTAGCTAGGCATATCCAGAAAGTA 58.684 40.000 24.35 0.00 37.29 2.24
2992 3427 9.806448 TTGTACATGTTAGATATTATGGCCAAT 57.194 29.630 10.96 1.22 0.00 3.16
2993 3428 9.062524 GTTGTACATGTTAGATATTATGGCCAA 57.937 33.333 10.96 0.00 0.00 4.52
2996 3431 8.221100 CGTGTTGTACATGTTAGATATTATGGC 58.779 37.037 2.30 0.00 30.72 4.40
2997 3432 8.708742 CCGTGTTGTACATGTTAGATATTATGG 58.291 37.037 2.30 0.00 33.37 2.74
3014 3450 7.266400 TGCTTGTATATATGAACCGTGTTGTA 58.734 34.615 0.00 0.00 0.00 2.41
3015 3451 6.110033 TGCTTGTATATATGAACCGTGTTGT 58.890 36.000 0.00 0.00 0.00 3.32
3016 3452 6.597262 TGCTTGTATATATGAACCGTGTTG 57.403 37.500 0.00 0.00 0.00 3.33
3017 3453 7.386848 GGTATGCTTGTATATATGAACCGTGTT 59.613 37.037 0.00 0.00 0.00 3.32
3019 3455 6.871492 TGGTATGCTTGTATATATGAACCGTG 59.129 38.462 0.00 0.00 0.00 4.94
3021 3457 6.871492 TGTGGTATGCTTGTATATATGAACCG 59.129 38.462 0.00 0.00 0.00 4.44
3022 3458 8.615878 TTGTGGTATGCTTGTATATATGAACC 57.384 34.615 0.00 0.00 0.00 3.62
3024 3460 9.230122 CCATTGTGGTATGCTTGTATATATGAA 57.770 33.333 0.00 0.00 31.35 2.57
3025 3461 8.791327 CCATTGTGGTATGCTTGTATATATGA 57.209 34.615 0.00 0.00 31.35 2.15
3042 3478 4.023622 TGTTGATTGTCGTAACCATTGTGG 60.024 41.667 0.00 0.00 45.02 4.17
3043 3479 5.102020 TGTTGATTGTCGTAACCATTGTG 57.898 39.130 0.00 0.00 0.00 3.33
3044 3480 5.759506 TTGTTGATTGTCGTAACCATTGT 57.240 34.783 0.00 0.00 0.00 2.71
3045 3481 6.434596 TCTTTGTTGATTGTCGTAACCATTG 58.565 36.000 0.00 0.00 0.00 2.82
3046 3482 6.627395 TCTTTGTTGATTGTCGTAACCATT 57.373 33.333 0.00 0.00 0.00 3.16
3047 3483 6.349280 CCATCTTTGTTGATTGTCGTAACCAT 60.349 38.462 0.00 0.00 0.00 3.55
3049 3485 5.180492 TCCATCTTTGTTGATTGTCGTAACC 59.820 40.000 0.00 0.00 0.00 2.85
3051 3487 5.760743 TGTCCATCTTTGTTGATTGTCGTAA 59.239 36.000 0.00 0.00 0.00 3.18
3054 3501 4.747540 TGTCCATCTTTGTTGATTGTCG 57.252 40.909 0.00 0.00 0.00 4.35
3068 3515 2.159627 CGTGCTACCACTTTTGTCCATC 59.840 50.000 0.00 0.00 39.86 3.51
3074 3521 1.070175 CGTTCCGTGCTACCACTTTTG 60.070 52.381 0.00 0.00 39.86 2.44
3075 3522 1.223187 CGTTCCGTGCTACCACTTTT 58.777 50.000 0.00 0.00 39.86 2.27
3076 3523 0.105408 ACGTTCCGTGCTACCACTTT 59.895 50.000 0.00 0.00 39.18 2.66
3077 3524 0.961019 TACGTTCCGTGCTACCACTT 59.039 50.000 0.00 0.00 41.39 3.16
3078 3525 0.242017 GTACGTTCCGTGCTACCACT 59.758 55.000 0.00 0.00 41.39 4.00
3079 3526 0.039256 TGTACGTTCCGTGCTACCAC 60.039 55.000 0.00 0.00 42.49 4.16
3080 3527 0.672889 TTGTACGTTCCGTGCTACCA 59.327 50.000 0.00 0.00 42.49 3.25
3081 3528 1.336240 ACTTGTACGTTCCGTGCTACC 60.336 52.381 0.00 0.00 42.49 3.18
3082 3529 2.056094 ACTTGTACGTTCCGTGCTAC 57.944 50.000 0.00 0.00 42.49 3.58
3083 3530 2.813754 ACTACTTGTACGTTCCGTGCTA 59.186 45.455 0.00 0.00 42.49 3.49
3084 3531 1.610522 ACTACTTGTACGTTCCGTGCT 59.389 47.619 0.00 0.00 42.49 4.40
3085 3532 2.056094 ACTACTTGTACGTTCCGTGC 57.944 50.000 0.00 0.00 41.39 5.34
3086 3533 6.022251 CGTTATAACTACTTGTACGTTCCGTG 60.022 42.308 13.56 0.00 41.39 4.94
3087 3534 6.021596 CGTTATAACTACTTGTACGTTCCGT 58.978 40.000 13.56 0.00 44.35 4.69
3088 3535 5.452302 CCGTTATAACTACTTGTACGTTCCG 59.548 44.000 13.56 0.00 0.00 4.30
3089 3536 6.551736 TCCGTTATAACTACTTGTACGTTCC 58.448 40.000 13.56 0.00 0.00 3.62
3090 3537 7.910162 TCATCCGTTATAACTACTTGTACGTTC 59.090 37.037 13.56 0.00 0.00 3.95
3091 3538 7.761409 TCATCCGTTATAACTACTTGTACGTT 58.239 34.615 13.56 0.00 0.00 3.99
3092 3539 7.320443 TCATCCGTTATAACTACTTGTACGT 57.680 36.000 13.56 0.00 0.00 3.57
3093 3540 8.792831 ATTCATCCGTTATAACTACTTGTACG 57.207 34.615 13.56 0.00 0.00 3.67
3106 3553 6.612247 TTGCGTAATTGATTCATCCGTTAT 57.388 33.333 0.00 0.00 0.00 1.89
3107 3554 6.426327 CATTGCGTAATTGATTCATCCGTTA 58.574 36.000 0.00 0.00 0.00 3.18
3116 3563 5.593909 TCCAATCTCCATTGCGTAATTGATT 59.406 36.000 0.00 4.81 38.53 2.57
3117 3564 5.132502 TCCAATCTCCATTGCGTAATTGAT 58.867 37.500 0.00 0.00 38.53 2.57
3118 3565 4.522114 TCCAATCTCCATTGCGTAATTGA 58.478 39.130 0.00 0.00 38.53 2.57
3126 3573 2.134789 ACCACTCCAATCTCCATTGC 57.865 50.000 0.00 0.00 38.53 3.56
3130 3577 4.927267 ATGTAAACCACTCCAATCTCCA 57.073 40.909 0.00 0.00 0.00 3.86
3132 3579 8.375506 TGGATATATGTAAACCACTCCAATCTC 58.624 37.037 0.00 0.00 0.00 2.75
3169 3616 7.201875 CCCTGTGAGTACATTTAAACTTTTGGT 60.202 37.037 0.00 0.00 35.97 3.67
3170 3617 7.145323 CCCTGTGAGTACATTTAAACTTTTGG 58.855 38.462 0.00 0.00 35.97 3.28
3171 3618 7.712797 ACCCTGTGAGTACATTTAAACTTTTG 58.287 34.615 0.00 0.00 35.97 2.44
3172 3619 7.891498 ACCCTGTGAGTACATTTAAACTTTT 57.109 32.000 0.00 0.00 35.97 2.27
3173 3620 8.983702 TTACCCTGTGAGTACATTTAAACTTT 57.016 30.769 0.00 0.00 35.97 2.66
3174 3621 8.983702 TTTACCCTGTGAGTACATTTAAACTT 57.016 30.769 0.00 0.00 35.97 2.66
3175 3622 8.983702 TTTTACCCTGTGAGTACATTTAAACT 57.016 30.769 0.00 0.00 35.97 2.66
3176 3623 9.620660 CATTTTACCCTGTGAGTACATTTAAAC 57.379 33.333 0.00 0.00 35.97 2.01
3177 3624 8.798402 CCATTTTACCCTGTGAGTACATTTAAA 58.202 33.333 0.00 0.00 35.97 1.52
3178 3625 7.945664 ACCATTTTACCCTGTGAGTACATTTAA 59.054 33.333 0.00 0.00 35.97 1.52
3179 3626 7.463431 ACCATTTTACCCTGTGAGTACATTTA 58.537 34.615 0.00 0.00 35.97 1.40
3180 3627 6.311735 ACCATTTTACCCTGTGAGTACATTT 58.688 36.000 0.00 0.00 35.97 2.32
3181 3628 5.887754 ACCATTTTACCCTGTGAGTACATT 58.112 37.500 0.00 0.00 35.97 2.71
3182 3629 5.013704 TGACCATTTTACCCTGTGAGTACAT 59.986 40.000 0.00 0.00 35.97 2.29
3183 3630 4.348461 TGACCATTTTACCCTGTGAGTACA 59.652 41.667 0.00 0.00 35.08 2.90
3184 3631 4.901868 TGACCATTTTACCCTGTGAGTAC 58.098 43.478 0.00 0.00 0.00 2.73
3185 3632 5.772393 ATGACCATTTTACCCTGTGAGTA 57.228 39.130 0.00 0.00 0.00 2.59
3186 3633 4.657814 ATGACCATTTTACCCTGTGAGT 57.342 40.909 0.00 0.00 0.00 3.41
3187 3634 5.009631 TGAATGACCATTTTACCCTGTGAG 58.990 41.667 0.00 0.00 0.00 3.51
3188 3635 4.764823 GTGAATGACCATTTTACCCTGTGA 59.235 41.667 0.00 0.00 0.00 3.58
3189 3636 4.522405 TGTGAATGACCATTTTACCCTGTG 59.478 41.667 0.00 0.00 0.00 3.66
3190 3637 4.735369 TGTGAATGACCATTTTACCCTGT 58.265 39.130 0.00 0.00 0.00 4.00
3191 3638 5.336690 CCTTGTGAATGACCATTTTACCCTG 60.337 44.000 0.00 0.00 0.00 4.45
3192 3639 4.772100 CCTTGTGAATGACCATTTTACCCT 59.228 41.667 0.00 0.00 0.00 4.34
3193 3640 4.081697 CCCTTGTGAATGACCATTTTACCC 60.082 45.833 0.00 0.00 0.00 3.69
3194 3641 4.620567 GCCCTTGTGAATGACCATTTTACC 60.621 45.833 0.00 0.00 0.00 2.85
3195 3642 4.494484 GCCCTTGTGAATGACCATTTTAC 58.506 43.478 0.00 1.53 0.00 2.01
3196 3643 3.192422 CGCCCTTGTGAATGACCATTTTA 59.808 43.478 0.00 0.00 0.00 1.52
3197 3644 2.029110 CGCCCTTGTGAATGACCATTTT 60.029 45.455 0.00 0.00 0.00 1.82
3198 3645 1.545582 CGCCCTTGTGAATGACCATTT 59.454 47.619 0.00 0.00 0.00 2.32
3199 3646 1.176527 CGCCCTTGTGAATGACCATT 58.823 50.000 0.00 0.00 0.00 3.16
3200 3647 0.680921 CCGCCCTTGTGAATGACCAT 60.681 55.000 0.00 0.00 0.00 3.55
3201 3648 1.303236 CCGCCCTTGTGAATGACCA 60.303 57.895 0.00 0.00 0.00 4.02
3202 3649 1.002624 TCCGCCCTTGTGAATGACC 60.003 57.895 0.00 0.00 0.00 4.02
3203 3650 1.648467 GCTCCGCCCTTGTGAATGAC 61.648 60.000 0.00 0.00 0.00 3.06
3204 3651 1.377202 GCTCCGCCCTTGTGAATGA 60.377 57.895 0.00 0.00 0.00 2.57
3205 3652 1.372087 GAGCTCCGCCCTTGTGAATG 61.372 60.000 0.87 0.00 0.00 2.67
3206 3653 1.078143 GAGCTCCGCCCTTGTGAAT 60.078 57.895 0.87 0.00 0.00 2.57
3207 3654 2.347490 GAGCTCCGCCCTTGTGAA 59.653 61.111 0.87 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.