Multiple sequence alignment - TraesCS2D01G288700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G288700 chr2D 100.000 3225 0 0 1 3225 370178048 370174824 0.000000e+00 5956
1 TraesCS2D01G288700 chr2A 91.633 2761 109 50 1 2668 501095252 501092521 0.000000e+00 3707
2 TraesCS2D01G288700 chr2A 94.462 325 15 3 2901 3223 311645288 311644965 6.210000e-137 497
3 TraesCS2D01G288700 chr2A 94.462 325 15 3 2901 3223 619668033 619667710 6.210000e-137 497
4 TraesCS2D01G288700 chr2A 96.203 158 4 2 2723 2878 615300126 615300283 1.150000e-64 257
5 TraesCS2D01G288700 chr2A 94.839 155 8 0 2724 2878 504105115 504105269 3.210000e-60 243
6 TraesCS2D01G288700 chr2B 97.381 1833 33 5 602 2423 439643406 439641578 0.000000e+00 3105
7 TraesCS2D01G288700 chr2B 89.914 347 12 10 281 615 439650892 439650557 2.970000e-115 425
8 TraesCS2D01G288700 chr2B 95.541 157 6 1 2723 2878 278838396 278838552 1.920000e-62 250
9 TraesCS2D01G288700 chr2B 94.304 158 8 1 2723 2879 712649695 712649538 1.160000e-59 241
10 TraesCS2D01G288700 chr2B 94.304 158 8 1 2722 2878 712747581 712747424 1.160000e-59 241
11 TraesCS2D01G288700 chr2B 91.971 137 5 4 166 296 439651086 439650950 1.530000e-43 187
12 TraesCS2D01G288700 chr3A 94.753 324 14 3 2902 3223 398514963 398514641 4.800000e-138 501
13 TraesCS2D01G288700 chr4A 94.462 325 15 3 2901 3223 116501997 116501674 6.210000e-137 497
14 TraesCS2D01G288700 chr4A 92.121 165 10 3 2723 2885 414640297 414640460 2.500000e-56 230
15 TraesCS2D01G288700 chr1A 94.462 325 15 3 2901 3223 159090604 159090927 6.210000e-137 497
16 TraesCS2D01G288700 chr1A 94.462 325 15 3 2901 3223 482919000 482918677 6.210000e-137 497
17 TraesCS2D01G288700 chr1A 94.444 324 15 3 2902 3223 78420931 78421253 2.230000e-136 496
18 TraesCS2D01G288700 chr1A 94.444 324 15 3 2902 3223 482935649 482935327 2.230000e-136 496
19 TraesCS2D01G288700 chr1A 93.656 331 17 4 2896 3223 203897604 203897933 2.890000e-135 492
20 TraesCS2D01G288700 chr1A 94.904 157 7 1 2723 2878 115973293 115973449 8.940000e-61 244
21 TraesCS2D01G288700 chr5A 96.178 157 5 1 2723 2878 135532650 135532806 4.130000e-64 255
22 TraesCS2D01G288700 chr6A 94.304 158 6 3 2723 2878 46738606 46738450 4.160000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G288700 chr2D 370174824 370178048 3224 True 5956 5956 100.0000 1 3225 1 chr2D.!!$R1 3224
1 TraesCS2D01G288700 chr2A 501092521 501095252 2731 True 3707 3707 91.6330 1 2668 1 chr2A.!!$R2 2667
2 TraesCS2D01G288700 chr2B 439641578 439643406 1828 True 3105 3105 97.3810 602 2423 1 chr2B.!!$R1 1821
3 TraesCS2D01G288700 chr2B 439650557 439651086 529 True 306 425 90.9425 166 615 2 chr2B.!!$R4 449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 899 0.856641 CAACACCACACGTAGTTCCG 59.143 55.0 0.0 0.0 41.61 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2688 2897 0.250234 GCACCATCACCAGCTGAGTA 59.75 55.0 17.39 0.0 30.2 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.946762 GTTTGTCAGCTCGGCCAC 59.053 61.111 2.24 0.00 0.00 5.01
48 49 8.408043 TTGGAACATCTAACAGTTGAATCATT 57.592 30.769 0.00 0.00 39.30 2.57
49 50 7.819644 TGGAACATCTAACAGTTGAATCATTG 58.180 34.615 0.00 0.00 0.00 2.82
71 73 2.472816 CACTTTTGTGCAATGTGACCC 58.527 47.619 10.74 0.00 44.07 4.46
85 87 4.280436 TGTGACCCAAATGTAATCTCGT 57.720 40.909 0.00 0.00 0.00 4.18
122 124 1.314730 GGTGACACCGTCCAAAACAT 58.685 50.000 9.33 0.00 0.00 2.71
177 189 7.325660 TGAGAAAGAATTGACTCAATATGGC 57.674 36.000 4.65 0.00 38.61 4.40
208 221 4.917415 CACAAAAATGAAAGGCTAAGTCCG 59.083 41.667 0.00 0.00 0.00 4.79
215 228 4.563061 TGAAAGGCTAAGTCCGTTAAGAC 58.437 43.478 0.00 0.00 37.01 3.01
392 483 5.972382 TGTTTCAAAAGTTATACACGTTGCC 59.028 36.000 0.00 0.00 0.00 4.52
393 484 6.183360 TGTTTCAAAAGTTATACACGTTGCCT 60.183 34.615 0.00 0.00 0.00 4.75
394 485 6.380095 TTCAAAAGTTATACACGTTGCCTT 57.620 33.333 0.00 0.00 0.00 4.35
395 486 5.992729 TCAAAAGTTATACACGTTGCCTTC 58.007 37.500 0.00 0.00 0.00 3.46
505 624 1.746787 TGCCTTGCAAGCATATGTGAG 59.253 47.619 21.43 5.11 34.76 3.51
506 625 1.747355 GCCTTGCAAGCATATGTGAGT 59.253 47.619 21.43 0.00 0.00 3.41
507 626 2.479049 GCCTTGCAAGCATATGTGAGTG 60.479 50.000 21.43 3.85 0.00 3.51
508 627 3.011818 CCTTGCAAGCATATGTGAGTGA 58.988 45.455 21.43 0.00 0.00 3.41
509 628 3.181503 CCTTGCAAGCATATGTGAGTGAC 60.182 47.826 21.43 0.00 0.00 3.67
510 629 3.056588 TGCAAGCATATGTGAGTGACA 57.943 42.857 4.29 0.00 39.53 3.58
562 696 2.286359 CGCATGTCCCATTTCGTGTATG 60.286 50.000 0.00 0.00 0.00 2.39
563 697 2.033299 GCATGTCCCATTTCGTGTATGG 59.967 50.000 0.00 0.00 41.83 2.74
600 734 1.873165 CGCCACCATTGTGTGTACC 59.127 57.895 0.00 0.00 41.09 3.34
637 783 4.665833 AAGGCCCAAAACTACAAAACTC 57.334 40.909 0.00 0.00 0.00 3.01
638 784 2.621526 AGGCCCAAAACTACAAAACTCG 59.378 45.455 0.00 0.00 0.00 4.18
639 785 2.390938 GCCCAAAACTACAAAACTCGC 58.609 47.619 0.00 0.00 0.00 5.03
640 786 2.223618 GCCCAAAACTACAAAACTCGCA 60.224 45.455 0.00 0.00 0.00 5.10
641 787 3.735514 GCCCAAAACTACAAAACTCGCAA 60.736 43.478 0.00 0.00 0.00 4.85
642 788 4.041723 CCCAAAACTACAAAACTCGCAAG 58.958 43.478 0.00 0.00 0.00 4.01
644 790 4.733405 CCAAAACTACAAAACTCGCAAGAC 59.267 41.667 0.00 0.00 45.01 3.01
645 791 5.328691 CAAAACTACAAAACTCGCAAGACA 58.671 37.500 0.00 0.00 45.01 3.41
646 792 5.554822 AAACTACAAAACTCGCAAGACAA 57.445 34.783 0.00 0.00 45.01 3.18
647 793 4.531659 ACTACAAAACTCGCAAGACAAC 57.468 40.909 0.00 0.00 45.01 3.32
648 794 4.189231 ACTACAAAACTCGCAAGACAACT 58.811 39.130 0.00 0.00 45.01 3.16
711 857 6.642540 CACTAAAATTTCCTCCAAGACAAAGC 59.357 38.462 0.00 0.00 0.00 3.51
738 884 1.508808 GACCGGCCGCTTAAACAACA 61.509 55.000 22.85 0.00 0.00 3.33
750 896 4.201841 GCTTAAACAACACCACACGTAGTT 60.202 41.667 0.00 0.00 41.61 2.24
751 897 5.467902 TTAAACAACACCACACGTAGTTC 57.532 39.130 0.00 0.00 41.61 3.01
753 899 0.856641 CAACACCACACGTAGTTCCG 59.143 55.000 0.00 0.00 41.61 4.30
759 908 2.202570 CACGTAGTTCCGCCGGAG 60.203 66.667 5.05 0.00 41.61 4.63
894 1044 0.928229 GACGAGAACACGCACAAGTT 59.072 50.000 0.00 0.00 36.70 2.66
1390 1543 0.981183 ACCTCACAATTCGGCCACTA 59.019 50.000 2.24 0.00 0.00 2.74
1391 1544 1.066143 ACCTCACAATTCGGCCACTAG 60.066 52.381 2.24 0.00 0.00 2.57
1392 1545 1.009829 CTCACAATTCGGCCACTAGC 58.990 55.000 2.24 0.00 42.60 3.42
1393 1546 0.613260 TCACAATTCGGCCACTAGCT 59.387 50.000 2.24 0.00 43.05 3.32
1450 1608 5.233050 CAGAGAAGTAGCATGTCGTTTATGG 59.767 44.000 0.00 0.00 0.00 2.74
1835 2002 9.494479 CGTGATAATTAACTTGTCGTACTTCTA 57.506 33.333 0.00 0.00 0.00 2.10
2037 2204 2.683933 CGAGGGGCTAGTGGTGGT 60.684 66.667 0.00 0.00 0.00 4.16
2380 2563 0.953960 GTTTTCCCATCAGCGTCGGT 60.954 55.000 0.00 0.00 0.00 4.69
2479 2662 0.451783 CATTGACTTTGCGGCCTACC 59.548 55.000 0.00 0.00 0.00 3.18
2532 2715 4.484258 GACGGCTTCGCTCGCTCT 62.484 66.667 0.00 0.00 37.41 4.09
2533 2716 4.484258 ACGGCTTCGCTCGCTCTC 62.484 66.667 0.00 0.00 37.41 3.20
2569 2778 2.041928 CTCCAGCCTTCCTCCCCT 59.958 66.667 0.00 0.00 0.00 4.79
2570 2779 2.041265 TCCAGCCTTCCTCCCCTC 59.959 66.667 0.00 0.00 0.00 4.30
2572 2781 3.474570 CAGCCTTCCTCCCCTCCG 61.475 72.222 0.00 0.00 0.00 4.63
2645 2854 1.657751 GCGACATGCCCTTCTTTCCC 61.658 60.000 0.00 0.00 37.76 3.97
2651 2860 3.077907 CCCTTCTTTCCCCGCTCA 58.922 61.111 0.00 0.00 0.00 4.26
2652 2861 1.378762 CCCTTCTTTCCCCGCTCAA 59.621 57.895 0.00 0.00 0.00 3.02
2653 2862 0.678048 CCCTTCTTTCCCCGCTCAAG 60.678 60.000 0.00 0.00 0.00 3.02
2654 2863 1.308783 CCTTCTTTCCCCGCTCAAGC 61.309 60.000 0.00 0.00 37.78 4.01
2692 2901 4.814294 CTGGCGGCGGTGGTACTC 62.814 72.222 9.78 0.00 0.00 2.59
2694 2903 4.814294 GGCGGCGGTGGTACTCAG 62.814 72.222 9.78 0.00 0.00 3.35
2696 2905 3.760035 CGGCGGTGGTACTCAGCT 61.760 66.667 0.00 0.00 42.22 4.24
2697 2906 2.125512 GGCGGTGGTACTCAGCTG 60.126 66.667 7.63 7.63 42.22 4.24
2698 2907 2.125512 GCGGTGGTACTCAGCTGG 60.126 66.667 15.13 7.28 39.70 4.85
2699 2908 2.943978 GCGGTGGTACTCAGCTGGT 61.944 63.158 15.13 13.13 39.70 4.00
2700 2909 1.079819 CGGTGGTACTCAGCTGGTG 60.080 63.158 15.13 9.92 41.41 4.17
2701 2910 1.532604 CGGTGGTACTCAGCTGGTGA 61.533 60.000 15.13 9.44 41.41 4.02
2702 2911 0.905357 GGTGGTACTCAGCTGGTGAT 59.095 55.000 15.13 3.85 40.48 3.06
2703 2912 1.406069 GGTGGTACTCAGCTGGTGATG 60.406 57.143 15.13 7.29 40.48 3.07
2704 2913 0.904649 TGGTACTCAGCTGGTGATGG 59.095 55.000 15.13 2.32 33.51 3.51
2705 2914 0.905357 GGTACTCAGCTGGTGATGGT 59.095 55.000 15.13 8.34 33.51 3.55
2706 2915 1.406069 GGTACTCAGCTGGTGATGGTG 60.406 57.143 15.13 1.22 33.51 4.17
2707 2916 0.250234 TACTCAGCTGGTGATGGTGC 59.750 55.000 15.13 0.00 33.51 5.01
2708 2917 2.046988 TCAGCTGGTGATGGTGCG 60.047 61.111 15.13 0.00 33.48 5.34
2709 2918 3.129502 CAGCTGGTGATGGTGCGG 61.130 66.667 5.57 0.00 0.00 5.69
2712 2921 2.360350 CTGGTGATGGTGCGGCTT 60.360 61.111 0.00 0.00 0.00 4.35
2713 2922 2.672651 TGGTGATGGTGCGGCTTG 60.673 61.111 0.00 0.00 0.00 4.01
2714 2923 3.443045 GGTGATGGTGCGGCTTGG 61.443 66.667 0.00 0.00 0.00 3.61
2715 2924 2.672996 GTGATGGTGCGGCTTGGT 60.673 61.111 0.00 0.00 0.00 3.67
2716 2925 2.672651 TGATGGTGCGGCTTGGTG 60.673 61.111 0.00 0.00 0.00 4.17
2717 2926 3.443045 GATGGTGCGGCTTGGTGG 61.443 66.667 0.00 0.00 0.00 4.61
2737 2946 2.547990 GGGGGTGTTAGAAGGAAGAGA 58.452 52.381 0.00 0.00 0.00 3.10
2738 2947 2.502130 GGGGGTGTTAGAAGGAAGAGAG 59.498 54.545 0.00 0.00 0.00 3.20
2739 2948 3.442076 GGGGTGTTAGAAGGAAGAGAGA 58.558 50.000 0.00 0.00 0.00 3.10
2740 2949 3.449377 GGGGTGTTAGAAGGAAGAGAGAG 59.551 52.174 0.00 0.00 0.00 3.20
2741 2950 3.449377 GGGTGTTAGAAGGAAGAGAGAGG 59.551 52.174 0.00 0.00 0.00 3.69
2742 2951 4.345854 GGTGTTAGAAGGAAGAGAGAGGA 58.654 47.826 0.00 0.00 0.00 3.71
2743 2952 4.959839 GGTGTTAGAAGGAAGAGAGAGGAT 59.040 45.833 0.00 0.00 0.00 3.24
2744 2953 5.423931 GGTGTTAGAAGGAAGAGAGAGGATT 59.576 44.000 0.00 0.00 0.00 3.01
2745 2954 6.337356 GTGTTAGAAGGAAGAGAGAGGATTG 58.663 44.000 0.00 0.00 0.00 2.67
2746 2955 5.423610 TGTTAGAAGGAAGAGAGAGGATTGG 59.576 44.000 0.00 0.00 0.00 3.16
2747 2956 4.073425 AGAAGGAAGAGAGAGGATTGGT 57.927 45.455 0.00 0.00 0.00 3.67
2748 2957 3.774216 AGAAGGAAGAGAGAGGATTGGTG 59.226 47.826 0.00 0.00 0.00 4.17
2749 2958 2.476199 AGGAAGAGAGAGGATTGGTGG 58.524 52.381 0.00 0.00 0.00 4.61
2750 2959 2.045047 AGGAAGAGAGAGGATTGGTGGA 59.955 50.000 0.00 0.00 0.00 4.02
2751 2960 2.840651 GGAAGAGAGAGGATTGGTGGAA 59.159 50.000 0.00 0.00 0.00 3.53
2752 2961 3.457749 GGAAGAGAGAGGATTGGTGGAAT 59.542 47.826 0.00 0.00 0.00 3.01
2753 2962 4.080072 GGAAGAGAGAGGATTGGTGGAATT 60.080 45.833 0.00 0.00 0.00 2.17
2754 2963 4.500499 AGAGAGAGGATTGGTGGAATTG 57.500 45.455 0.00 0.00 0.00 2.32
2755 2964 3.848975 AGAGAGAGGATTGGTGGAATTGT 59.151 43.478 0.00 0.00 0.00 2.71
2756 2965 4.290722 AGAGAGAGGATTGGTGGAATTGTT 59.709 41.667 0.00 0.00 0.00 2.83
2757 2966 4.338879 AGAGAGGATTGGTGGAATTGTTG 58.661 43.478 0.00 0.00 0.00 3.33
2758 2967 4.043310 AGAGAGGATTGGTGGAATTGTTGA 59.957 41.667 0.00 0.00 0.00 3.18
2759 2968 4.939255 AGAGGATTGGTGGAATTGTTGAT 58.061 39.130 0.00 0.00 0.00 2.57
2760 2969 4.708421 AGAGGATTGGTGGAATTGTTGATG 59.292 41.667 0.00 0.00 0.00 3.07
2761 2970 4.419282 AGGATTGGTGGAATTGTTGATGT 58.581 39.130 0.00 0.00 0.00 3.06
2762 2971 5.579047 AGGATTGGTGGAATTGTTGATGTA 58.421 37.500 0.00 0.00 0.00 2.29
2763 2972 6.197168 AGGATTGGTGGAATTGTTGATGTAT 58.803 36.000 0.00 0.00 0.00 2.29
2764 2973 6.669154 AGGATTGGTGGAATTGTTGATGTATT 59.331 34.615 0.00 0.00 0.00 1.89
2765 2974 6.757947 GGATTGGTGGAATTGTTGATGTATTG 59.242 38.462 0.00 0.00 0.00 1.90
2766 2975 5.070770 TGGTGGAATTGTTGATGTATTGC 57.929 39.130 0.00 0.00 0.00 3.56
2767 2976 4.771577 TGGTGGAATTGTTGATGTATTGCT 59.228 37.500 0.00 0.00 0.00 3.91
2768 2977 5.245751 TGGTGGAATTGTTGATGTATTGCTT 59.754 36.000 0.00 0.00 0.00 3.91
2769 2978 5.577945 GGTGGAATTGTTGATGTATTGCTTG 59.422 40.000 0.00 0.00 0.00 4.01
2770 2979 6.389091 GTGGAATTGTTGATGTATTGCTTGA 58.611 36.000 0.00 0.00 0.00 3.02
2771 2980 6.529125 GTGGAATTGTTGATGTATTGCTTGAG 59.471 38.462 0.00 0.00 0.00 3.02
2772 2981 5.517770 GGAATTGTTGATGTATTGCTTGAGC 59.482 40.000 0.00 0.00 42.50 4.26
2773 2982 4.439305 TTGTTGATGTATTGCTTGAGCC 57.561 40.909 0.00 0.00 41.18 4.70
2774 2983 3.689347 TGTTGATGTATTGCTTGAGCCT 58.311 40.909 0.00 0.00 41.18 4.58
2775 2984 3.691118 TGTTGATGTATTGCTTGAGCCTC 59.309 43.478 0.00 0.00 41.18 4.70
2776 2985 3.632643 TGATGTATTGCTTGAGCCTCA 57.367 42.857 0.00 0.00 41.18 3.86
2777 2986 4.160642 TGATGTATTGCTTGAGCCTCAT 57.839 40.909 0.00 0.71 41.18 2.90
2778 2987 3.881089 TGATGTATTGCTTGAGCCTCATG 59.119 43.478 0.00 0.00 41.18 3.07
2779 2988 2.646930 TGTATTGCTTGAGCCTCATGG 58.353 47.619 9.39 0.96 41.18 3.66
2780 2989 1.952296 GTATTGCTTGAGCCTCATGGG 59.048 52.381 9.39 0.00 41.18 4.00
2797 3006 8.128322 CCTCATGGGCATATATATAGGAGTAC 57.872 42.308 8.56 0.00 0.00 2.73
2798 3007 7.730332 CCTCATGGGCATATATATAGGAGTACA 59.270 40.741 8.56 1.88 0.00 2.90
2799 3008 9.147732 CTCATGGGCATATATATAGGAGTACAA 57.852 37.037 8.56 0.00 0.00 2.41
2800 3009 9.147732 TCATGGGCATATATATAGGAGTACAAG 57.852 37.037 8.56 0.00 0.00 3.16
2801 3010 7.914427 TGGGCATATATATAGGAGTACAAGG 57.086 40.000 8.56 0.00 0.00 3.61
2802 3011 7.427501 TGGGCATATATATAGGAGTACAAGGT 58.572 38.462 8.56 0.00 0.00 3.50
2803 3012 7.563924 TGGGCATATATATAGGAGTACAAGGTC 59.436 40.741 8.56 0.00 0.00 3.85
2804 3013 7.255520 GGGCATATATATAGGAGTACAAGGTCG 60.256 44.444 8.56 0.00 0.00 4.79
2805 3014 7.284944 GGCATATATATAGGAGTACAAGGTCGT 59.715 40.741 8.56 0.00 0.00 4.34
2806 3015 8.344098 GCATATATATAGGAGTACAAGGTCGTC 58.656 40.741 8.56 0.00 0.00 4.20
2807 3016 9.616156 CATATATATAGGAGTACAAGGTCGTCT 57.384 37.037 0.00 0.00 0.00 4.18
2827 3036 2.270352 TGAAGTACAAGGCAAGGTGG 57.730 50.000 0.00 0.00 0.00 4.61
2828 3037 1.771854 TGAAGTACAAGGCAAGGTGGA 59.228 47.619 0.00 0.00 0.00 4.02
2829 3038 2.173782 TGAAGTACAAGGCAAGGTGGAA 59.826 45.455 0.00 0.00 0.00 3.53
2830 3039 3.181434 TGAAGTACAAGGCAAGGTGGAAT 60.181 43.478 0.00 0.00 0.00 3.01
2831 3040 4.042311 TGAAGTACAAGGCAAGGTGGAATA 59.958 41.667 0.00 0.00 0.00 1.75
2832 3041 4.650972 AGTACAAGGCAAGGTGGAATAA 57.349 40.909 0.00 0.00 0.00 1.40
2833 3042 4.993028 AGTACAAGGCAAGGTGGAATAAA 58.007 39.130 0.00 0.00 0.00 1.40
2834 3043 5.580022 AGTACAAGGCAAGGTGGAATAAAT 58.420 37.500 0.00 0.00 0.00 1.40
2835 3044 5.652452 AGTACAAGGCAAGGTGGAATAAATC 59.348 40.000 0.00 0.00 0.00 2.17
2851 3060 7.783042 GGAATAAATCCTACGCTATCCTATGT 58.217 38.462 0.00 0.00 45.56 2.29
2852 3061 8.258708 GGAATAAATCCTACGCTATCCTATGTT 58.741 37.037 0.00 0.00 45.56 2.71
2853 3062 9.654663 GAATAAATCCTACGCTATCCTATGTTT 57.345 33.333 0.00 0.00 0.00 2.83
2854 3063 9.654663 AATAAATCCTACGCTATCCTATGTTTC 57.345 33.333 0.00 0.00 0.00 2.78
2855 3064 5.662674 ATCCTACGCTATCCTATGTTTCC 57.337 43.478 0.00 0.00 0.00 3.13
2856 3065 4.476297 TCCTACGCTATCCTATGTTTCCA 58.524 43.478 0.00 0.00 0.00 3.53
2857 3066 5.084519 TCCTACGCTATCCTATGTTTCCAT 58.915 41.667 0.00 0.00 34.97 3.41
2858 3067 6.250711 TCCTACGCTATCCTATGTTTCCATA 58.749 40.000 0.00 0.00 32.29 2.74
2859 3068 6.722590 TCCTACGCTATCCTATGTTTCCATAA 59.277 38.462 0.00 0.00 33.23 1.90
2860 3069 7.399191 TCCTACGCTATCCTATGTTTCCATAAT 59.601 37.037 0.00 0.00 33.23 1.28
2861 3070 8.692710 CCTACGCTATCCTATGTTTCCATAATA 58.307 37.037 0.00 0.00 33.23 0.98
2863 3072 8.773404 ACGCTATCCTATGTTTCCATAATAAC 57.227 34.615 0.00 0.00 33.23 1.89
2864 3073 8.372459 ACGCTATCCTATGTTTCCATAATAACA 58.628 33.333 0.00 0.00 38.50 2.41
2865 3074 9.214957 CGCTATCCTATGTTTCCATAATAACAA 57.785 33.333 0.00 0.00 37.75 2.83
2879 3088 9.056005 TCCATAATAACAATGATACTCAACAGC 57.944 33.333 0.00 0.00 0.00 4.40
2880 3089 8.839343 CCATAATAACAATGATACTCAACAGCA 58.161 33.333 0.00 0.00 0.00 4.41
2881 3090 9.874215 CATAATAACAATGATACTCAACAGCAG 57.126 33.333 0.00 0.00 0.00 4.24
2882 3091 6.932356 ATAACAATGATACTCAACAGCAGG 57.068 37.500 0.00 0.00 0.00 4.85
2883 3092 3.614092 ACAATGATACTCAACAGCAGGG 58.386 45.455 0.00 0.00 0.00 4.45
2884 3093 3.009473 ACAATGATACTCAACAGCAGGGT 59.991 43.478 0.00 0.00 0.00 4.34
2885 3094 4.012374 CAATGATACTCAACAGCAGGGTT 58.988 43.478 0.00 0.00 0.00 4.11
2886 3095 3.334583 TGATACTCAACAGCAGGGTTC 57.665 47.619 0.00 0.00 0.00 3.62
2887 3096 2.027192 TGATACTCAACAGCAGGGTTCC 60.027 50.000 0.00 0.00 0.00 3.62
2888 3097 0.320374 TACTCAACAGCAGGGTTCCG 59.680 55.000 0.00 0.00 0.00 4.30
2889 3098 2.281484 TCAACAGCAGGGTTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
2890 3099 3.726517 CAACAGCAGGGTTCCGCG 61.727 66.667 0.00 0.00 0.00 6.46
2933 3142 3.879427 GACTCATAAGTCGAGATCACCG 58.121 50.000 0.00 0.00 42.42 4.94
2934 3143 3.542648 ACTCATAAGTCGAGATCACCGA 58.457 45.455 6.19 6.19 34.47 4.69
2935 3144 3.945921 ACTCATAAGTCGAGATCACCGAA 59.054 43.478 11.01 0.00 37.81 4.30
2936 3145 4.580995 ACTCATAAGTCGAGATCACCGAAT 59.419 41.667 11.01 7.98 37.81 3.34
2937 3146 4.860072 TCATAAGTCGAGATCACCGAATG 58.140 43.478 11.01 11.19 37.81 2.67
2938 3147 1.927895 AAGTCGAGATCACCGAATGC 58.072 50.000 11.01 1.43 37.81 3.56
2939 3148 0.817654 AGTCGAGATCACCGAATGCA 59.182 50.000 11.01 0.00 37.81 3.96
2940 3149 0.924090 GTCGAGATCACCGAATGCAC 59.076 55.000 11.01 0.00 37.81 4.57
2941 3150 0.525455 TCGAGATCACCGAATGCACG 60.525 55.000 7.61 0.00 32.64 5.34
2942 3151 0.802222 CGAGATCACCGAATGCACGT 60.802 55.000 0.00 0.00 0.00 4.49
2943 3152 0.647410 GAGATCACCGAATGCACGTG 59.353 55.000 12.28 12.28 0.00 4.49
2944 3153 0.037326 AGATCACCGAATGCACGTGT 60.037 50.000 18.38 0.00 0.00 4.49
2945 3154 1.203758 AGATCACCGAATGCACGTGTA 59.796 47.619 18.38 14.09 0.00 2.90
2946 3155 1.323534 GATCACCGAATGCACGTGTAC 59.676 52.381 18.38 1.32 0.00 2.90
2947 3156 0.032267 TCACCGAATGCACGTGTACA 59.968 50.000 18.38 7.94 0.00 2.90
2948 3157 0.438445 CACCGAATGCACGTGTACAG 59.562 55.000 18.38 7.58 0.00 2.74
2949 3158 0.032952 ACCGAATGCACGTGTACAGT 59.967 50.000 18.38 6.62 0.00 3.55
2950 3159 0.438445 CCGAATGCACGTGTACAGTG 59.562 55.000 18.38 16.47 42.15 3.66
2951 3160 1.414378 CGAATGCACGTGTACAGTGA 58.586 50.000 18.38 11.82 41.83 3.41
2952 3161 1.992667 CGAATGCACGTGTACAGTGAT 59.007 47.619 18.38 13.02 41.83 3.06
2953 3162 2.028045 CGAATGCACGTGTACAGTGATC 59.972 50.000 18.38 16.15 41.83 2.92
2954 3163 2.010145 ATGCACGTGTACAGTGATCC 57.990 50.000 18.38 10.21 41.83 3.36
2955 3164 0.037697 TGCACGTGTACAGTGATCCC 60.038 55.000 18.38 9.96 41.83 3.85
2956 3165 0.037697 GCACGTGTACAGTGATCCCA 60.038 55.000 18.38 0.00 41.83 4.37
2957 3166 1.996292 CACGTGTACAGTGATCCCAG 58.004 55.000 7.58 0.00 41.83 4.45
2958 3167 1.544246 CACGTGTACAGTGATCCCAGA 59.456 52.381 7.58 0.00 41.83 3.86
2959 3168 1.819288 ACGTGTACAGTGATCCCAGAG 59.181 52.381 0.00 0.00 0.00 3.35
2960 3169 2.092323 CGTGTACAGTGATCCCAGAGA 58.908 52.381 0.00 0.00 0.00 3.10
2961 3170 2.690497 CGTGTACAGTGATCCCAGAGAT 59.310 50.000 0.00 0.00 38.17 2.75
2971 3180 2.996249 TCCCAGAGATCAATGCTCAC 57.004 50.000 0.00 0.00 34.85 3.51
2972 3181 2.475155 TCCCAGAGATCAATGCTCACT 58.525 47.619 0.00 0.00 34.85 3.41
2973 3182 2.169978 TCCCAGAGATCAATGCTCACTG 59.830 50.000 4.87 4.87 34.85 3.66
2974 3183 2.169978 CCCAGAGATCAATGCTCACTGA 59.830 50.000 11.95 0.00 34.46 3.41
2975 3184 3.370209 CCCAGAGATCAATGCTCACTGAA 60.370 47.826 11.95 0.00 34.46 3.02
2976 3185 3.622163 CCAGAGATCAATGCTCACTGAAC 59.378 47.826 11.95 0.00 34.46 3.18
2977 3186 4.251268 CAGAGATCAATGCTCACTGAACA 58.749 43.478 5.78 0.00 34.46 3.18
2978 3187 4.093115 CAGAGATCAATGCTCACTGAACAC 59.907 45.833 5.78 0.00 34.46 3.32
2979 3188 3.999001 GAGATCAATGCTCACTGAACACA 59.001 43.478 0.00 0.00 32.67 3.72
2980 3189 3.750130 AGATCAATGCTCACTGAACACAC 59.250 43.478 0.00 0.00 0.00 3.82
2981 3190 2.916640 TCAATGCTCACTGAACACACA 58.083 42.857 0.00 0.00 0.00 3.72
2982 3191 2.874086 TCAATGCTCACTGAACACACAG 59.126 45.455 0.00 0.00 42.78 3.66
2983 3192 2.874086 CAATGCTCACTGAACACACAGA 59.126 45.455 0.00 0.00 40.63 3.41
2984 3193 2.689553 TGCTCACTGAACACACAGAA 57.310 45.000 0.00 0.00 40.63 3.02
2985 3194 2.554142 TGCTCACTGAACACACAGAAG 58.446 47.619 0.00 0.00 40.63 2.85
2986 3195 1.262683 GCTCACTGAACACACAGAAGC 59.737 52.381 0.00 0.00 40.08 3.86
2987 3196 2.831333 CTCACTGAACACACAGAAGCT 58.169 47.619 0.00 0.00 40.63 3.74
2988 3197 2.543012 CTCACTGAACACACAGAAGCTG 59.457 50.000 0.00 0.00 40.63 4.24
2989 3198 2.168313 TCACTGAACACACAGAAGCTGA 59.832 45.455 0.82 0.00 40.63 4.26
2990 3199 2.938451 CACTGAACACACAGAAGCTGAA 59.062 45.455 0.82 0.00 40.63 3.02
2991 3200 3.562973 CACTGAACACACAGAAGCTGAAT 59.437 43.478 0.82 0.00 40.63 2.57
2992 3201 4.751600 CACTGAACACACAGAAGCTGAATA 59.248 41.667 0.82 0.00 40.63 1.75
2993 3202 5.237127 CACTGAACACACAGAAGCTGAATAA 59.763 40.000 0.82 0.00 40.63 1.40
2994 3203 5.237344 ACTGAACACACAGAAGCTGAATAAC 59.763 40.000 0.82 0.00 40.63 1.89
2995 3204 5.122519 TGAACACACAGAAGCTGAATAACA 58.877 37.500 0.82 0.00 35.18 2.41
2996 3205 5.588246 TGAACACACAGAAGCTGAATAACAA 59.412 36.000 0.82 0.00 35.18 2.83
2997 3206 5.679734 ACACACAGAAGCTGAATAACAAG 57.320 39.130 0.82 0.00 35.18 3.16
2998 3207 5.368145 ACACACAGAAGCTGAATAACAAGA 58.632 37.500 0.82 0.00 35.18 3.02
2999 3208 5.468072 ACACACAGAAGCTGAATAACAAGAG 59.532 40.000 0.82 0.00 35.18 2.85
3000 3209 5.468072 CACACAGAAGCTGAATAACAAGAGT 59.532 40.000 0.82 0.00 35.18 3.24
3001 3210 5.698545 ACACAGAAGCTGAATAACAAGAGTC 59.301 40.000 0.82 0.00 35.18 3.36
3002 3211 5.931146 CACAGAAGCTGAATAACAAGAGTCT 59.069 40.000 0.82 0.00 35.18 3.24
3003 3212 6.426328 CACAGAAGCTGAATAACAAGAGTCTT 59.574 38.462 0.00 0.00 35.18 3.01
3004 3213 7.600375 CACAGAAGCTGAATAACAAGAGTCTTA 59.400 37.037 4.74 0.00 35.18 2.10
3005 3214 7.600752 ACAGAAGCTGAATAACAAGAGTCTTAC 59.399 37.037 4.74 0.00 35.18 2.34
3006 3215 7.600375 CAGAAGCTGAATAACAAGAGTCTTACA 59.400 37.037 4.74 0.00 32.44 2.41
3007 3216 8.317679 AGAAGCTGAATAACAAGAGTCTTACAT 58.682 33.333 4.74 0.00 0.00 2.29
3008 3217 8.485976 AAGCTGAATAACAAGAGTCTTACATC 57.514 34.615 4.74 1.34 0.00 3.06
3009 3218 7.044798 AGCTGAATAACAAGAGTCTTACATCC 58.955 38.462 4.74 0.00 0.00 3.51
3010 3219 6.818644 GCTGAATAACAAGAGTCTTACATCCA 59.181 38.462 4.74 0.00 0.00 3.41
3011 3220 7.497249 GCTGAATAACAAGAGTCTTACATCCAT 59.503 37.037 4.74 0.00 0.00 3.41
3013 3222 9.817809 TGAATAACAAGAGTCTTACATCCATAC 57.182 33.333 4.74 0.00 0.00 2.39
3014 3223 9.817809 GAATAACAAGAGTCTTACATCCATACA 57.182 33.333 4.74 0.00 0.00 2.29
3018 3227 7.727181 ACAAGAGTCTTACATCCATACATACC 58.273 38.462 4.74 0.00 0.00 2.73
3019 3228 6.576662 AGAGTCTTACATCCATACATACCG 57.423 41.667 0.00 0.00 0.00 4.02
3020 3229 6.069331 AGAGTCTTACATCCATACATACCGT 58.931 40.000 0.00 0.00 0.00 4.83
3021 3230 6.207025 AGAGTCTTACATCCATACATACCGTC 59.793 42.308 0.00 0.00 0.00 4.79
3022 3231 6.069331 AGTCTTACATCCATACATACCGTCT 58.931 40.000 0.00 0.00 0.00 4.18
3023 3232 6.550108 AGTCTTACATCCATACATACCGTCTT 59.450 38.462 0.00 0.00 0.00 3.01
3024 3233 7.722728 AGTCTTACATCCATACATACCGTCTTA 59.277 37.037 0.00 0.00 0.00 2.10
3025 3234 7.806960 GTCTTACATCCATACATACCGTCTTAC 59.193 40.741 0.00 0.00 0.00 2.34
3026 3235 7.503230 TCTTACATCCATACATACCGTCTTACA 59.497 37.037 0.00 0.00 0.00 2.41
3027 3236 6.474140 ACATCCATACATACCGTCTTACAA 57.526 37.500 0.00 0.00 0.00 2.41
3028 3237 6.880484 ACATCCATACATACCGTCTTACAAA 58.120 36.000 0.00 0.00 0.00 2.83
3029 3238 7.332557 ACATCCATACATACCGTCTTACAAAA 58.667 34.615 0.00 0.00 0.00 2.44
3030 3239 7.825270 ACATCCATACATACCGTCTTACAAAAA 59.175 33.333 0.00 0.00 0.00 1.94
3031 3240 8.836413 CATCCATACATACCGTCTTACAAAAAT 58.164 33.333 0.00 0.00 0.00 1.82
3032 3241 8.795842 TCCATACATACCGTCTTACAAAAATT 57.204 30.769 0.00 0.00 0.00 1.82
3033 3242 9.887629 TCCATACATACCGTCTTACAAAAATTA 57.112 29.630 0.00 0.00 0.00 1.40
3034 3243 9.925268 CCATACATACCGTCTTACAAAAATTAC 57.075 33.333 0.00 0.00 0.00 1.89
3035 3244 9.627657 CATACATACCGTCTTACAAAAATTACG 57.372 33.333 0.00 0.00 0.00 3.18
3036 3245 7.887996 ACATACCGTCTTACAAAAATTACGA 57.112 32.000 0.00 0.00 32.35 3.43
3037 3246 7.732664 ACATACCGTCTTACAAAAATTACGAC 58.267 34.615 0.00 0.00 32.35 4.34
3038 3247 5.596268 ACCGTCTTACAAAAATTACGACC 57.404 39.130 0.00 0.00 32.35 4.79
3039 3248 5.055812 ACCGTCTTACAAAAATTACGACCA 58.944 37.500 0.00 0.00 32.35 4.02
3040 3249 5.702209 ACCGTCTTACAAAAATTACGACCAT 59.298 36.000 0.00 0.00 32.35 3.55
3041 3250 6.205270 ACCGTCTTACAAAAATTACGACCATT 59.795 34.615 0.00 0.00 32.35 3.16
3042 3251 7.387397 ACCGTCTTACAAAAATTACGACCATTA 59.613 33.333 0.00 0.00 32.35 1.90
3043 3252 8.392612 CCGTCTTACAAAAATTACGACCATTAT 58.607 33.333 0.00 0.00 32.35 1.28
3047 3256 9.659830 CTTACAAAAATTACGACCATTATAGGC 57.340 33.333 0.00 0.00 0.00 3.93
3048 3257 7.633193 ACAAAAATTACGACCATTATAGGCA 57.367 32.000 0.00 0.00 0.00 4.75
3049 3258 8.057536 ACAAAAATTACGACCATTATAGGCAA 57.942 30.769 0.00 0.00 0.00 4.52
3050 3259 8.188139 ACAAAAATTACGACCATTATAGGCAAG 58.812 33.333 0.00 0.00 0.00 4.01
3051 3260 7.875327 AAAATTACGACCATTATAGGCAAGT 57.125 32.000 0.00 0.00 0.00 3.16
3052 3261 7.492352 AAATTACGACCATTATAGGCAAGTC 57.508 36.000 0.00 0.00 0.00 3.01
3053 3262 5.864418 TTACGACCATTATAGGCAAGTCT 57.136 39.130 0.00 0.00 0.00 3.24
3054 3263 4.755266 ACGACCATTATAGGCAAGTCTT 57.245 40.909 0.00 0.00 0.00 3.01
3055 3264 5.864418 ACGACCATTATAGGCAAGTCTTA 57.136 39.130 0.00 0.00 0.00 2.10
3056 3265 5.598769 ACGACCATTATAGGCAAGTCTTAC 58.401 41.667 0.00 0.00 0.00 2.34
3057 3266 5.128171 ACGACCATTATAGGCAAGTCTTACA 59.872 40.000 0.00 0.00 0.00 2.41
3058 3267 6.183360 ACGACCATTATAGGCAAGTCTTACAT 60.183 38.462 0.00 0.00 0.00 2.29
3059 3268 7.014905 ACGACCATTATAGGCAAGTCTTACATA 59.985 37.037 0.00 0.00 0.00 2.29
3060 3269 7.542477 CGACCATTATAGGCAAGTCTTACATAG 59.458 40.741 0.00 0.00 0.00 2.23
3061 3270 8.492415 ACCATTATAGGCAAGTCTTACATAGA 57.508 34.615 0.00 0.00 0.00 1.98
3062 3271 9.105844 ACCATTATAGGCAAGTCTTACATAGAT 57.894 33.333 0.00 0.00 34.79 1.98
3067 3276 6.339587 AGGCAAGTCTTACATAGATAGAGC 57.660 41.667 0.00 0.00 34.79 4.09
3068 3277 5.245075 AGGCAAGTCTTACATAGATAGAGCC 59.755 44.000 0.00 0.00 38.55 4.70
3069 3278 5.245075 GGCAAGTCTTACATAGATAGAGCCT 59.755 44.000 0.00 0.00 36.90 4.58
3070 3279 6.386654 GCAAGTCTTACATAGATAGAGCCTC 58.613 44.000 0.00 0.00 34.79 4.70
3071 3280 6.015856 GCAAGTCTTACATAGATAGAGCCTCA 60.016 42.308 0.00 0.00 34.79 3.86
3072 3281 7.470702 GCAAGTCTTACATAGATAGAGCCTCAA 60.471 40.741 0.00 0.00 34.79 3.02
3073 3282 7.759489 AGTCTTACATAGATAGAGCCTCAAG 57.241 40.000 0.00 0.00 34.79 3.02
3074 3283 6.719370 AGTCTTACATAGATAGAGCCTCAAGG 59.281 42.308 0.00 0.00 34.79 3.61
3075 3284 6.013379 TCTTACATAGATAGAGCCTCAAGGG 58.987 44.000 0.00 0.00 35.18 3.95
3084 3293 4.285851 CCTCAAGGGCTGAACGTC 57.714 61.111 0.00 0.00 32.17 4.34
3085 3294 1.371183 CCTCAAGGGCTGAACGTCA 59.629 57.895 0.00 0.00 32.17 4.35
3086 3295 0.250295 CCTCAAGGGCTGAACGTCAA 60.250 55.000 0.00 0.00 32.17 3.18
3087 3296 1.593196 CTCAAGGGCTGAACGTCAAA 58.407 50.000 0.00 0.00 32.17 2.69
3088 3297 2.154462 CTCAAGGGCTGAACGTCAAAT 58.846 47.619 0.00 0.00 32.17 2.32
3089 3298 3.334691 CTCAAGGGCTGAACGTCAAATA 58.665 45.455 0.00 0.00 32.17 1.40
3090 3299 3.745799 TCAAGGGCTGAACGTCAAATAA 58.254 40.909 0.00 0.00 0.00 1.40
3091 3300 4.138290 TCAAGGGCTGAACGTCAAATAAA 58.862 39.130 0.00 0.00 0.00 1.40
3092 3301 4.023536 TCAAGGGCTGAACGTCAAATAAAC 60.024 41.667 0.00 0.00 0.00 2.01
3093 3302 3.751518 AGGGCTGAACGTCAAATAAACT 58.248 40.909 0.00 0.00 0.00 2.66
3094 3303 3.751698 AGGGCTGAACGTCAAATAAACTC 59.248 43.478 0.00 0.00 0.00 3.01
3095 3304 3.500680 GGGCTGAACGTCAAATAAACTCA 59.499 43.478 0.00 0.00 0.00 3.41
3096 3305 4.023536 GGGCTGAACGTCAAATAAACTCAA 60.024 41.667 0.00 0.00 0.00 3.02
3097 3306 5.147162 GGCTGAACGTCAAATAAACTCAAG 58.853 41.667 0.00 0.00 0.00 3.02
3098 3307 4.613031 GCTGAACGTCAAATAAACTCAAGC 59.387 41.667 0.00 0.00 0.00 4.01
3099 3308 5.743026 TGAACGTCAAATAAACTCAAGCA 57.257 34.783 0.00 0.00 0.00 3.91
3100 3309 5.747565 TGAACGTCAAATAAACTCAAGCAG 58.252 37.500 0.00 0.00 0.00 4.24
3101 3310 4.147219 ACGTCAAATAAACTCAAGCAGC 57.853 40.909 0.00 0.00 0.00 5.25
3102 3311 3.155998 CGTCAAATAAACTCAAGCAGCG 58.844 45.455 0.00 0.00 0.00 5.18
3103 3312 3.492313 GTCAAATAAACTCAAGCAGCGG 58.508 45.455 0.00 0.00 0.00 5.52
3104 3313 3.188460 GTCAAATAAACTCAAGCAGCGGA 59.812 43.478 0.00 0.00 0.00 5.54
3105 3314 3.818210 TCAAATAAACTCAAGCAGCGGAA 59.182 39.130 0.00 0.00 0.00 4.30
3106 3315 4.277174 TCAAATAAACTCAAGCAGCGGAAA 59.723 37.500 0.00 0.00 0.00 3.13
3107 3316 5.048083 TCAAATAAACTCAAGCAGCGGAAAT 60.048 36.000 0.00 0.00 0.00 2.17
3108 3317 2.997485 AAACTCAAGCAGCGGAAATC 57.003 45.000 0.00 0.00 0.00 2.17
3109 3318 2.191128 AACTCAAGCAGCGGAAATCT 57.809 45.000 0.00 0.00 0.00 2.40
3110 3319 2.191128 ACTCAAGCAGCGGAAATCTT 57.809 45.000 0.00 0.00 0.00 2.40
3111 3320 2.079925 ACTCAAGCAGCGGAAATCTTC 58.920 47.619 0.00 0.00 0.00 2.87
3112 3321 1.061711 CTCAAGCAGCGGAAATCTTCG 59.938 52.381 0.00 0.00 0.00 3.79
3113 3322 0.798776 CAAGCAGCGGAAATCTTCGT 59.201 50.000 0.00 0.00 0.00 3.85
3114 3323 1.197721 CAAGCAGCGGAAATCTTCGTT 59.802 47.619 0.00 0.00 0.00 3.85
3115 3324 0.798776 AGCAGCGGAAATCTTCGTTG 59.201 50.000 0.00 0.00 39.85 4.10
3116 3325 0.796312 GCAGCGGAAATCTTCGTTGA 59.204 50.000 3.96 0.00 39.36 3.18
3117 3326 1.398390 GCAGCGGAAATCTTCGTTGAT 59.602 47.619 3.96 0.00 39.36 2.57
3118 3327 2.607635 GCAGCGGAAATCTTCGTTGATA 59.392 45.455 3.96 0.00 39.36 2.15
3119 3328 3.063452 GCAGCGGAAATCTTCGTTGATAA 59.937 43.478 3.96 0.00 39.36 1.75
3120 3329 4.783450 GCAGCGGAAATCTTCGTTGATAAG 60.783 45.833 3.96 0.00 39.36 1.73
3121 3330 4.330074 CAGCGGAAATCTTCGTTGATAAGT 59.670 41.667 0.00 0.00 39.36 2.24
3122 3331 5.518847 CAGCGGAAATCTTCGTTGATAAGTA 59.481 40.000 0.00 0.00 39.36 2.24
3123 3332 5.749109 AGCGGAAATCTTCGTTGATAAGTAG 59.251 40.000 0.00 0.00 0.00 2.57
3124 3333 5.050972 GCGGAAATCTTCGTTGATAAGTAGG 60.051 44.000 0.00 0.00 0.00 3.18
3125 3334 6.270815 CGGAAATCTTCGTTGATAAGTAGGA 58.729 40.000 0.00 0.00 0.00 2.94
3126 3335 6.198591 CGGAAATCTTCGTTGATAAGTAGGAC 59.801 42.308 0.00 0.00 0.00 3.85
3127 3336 6.479331 GGAAATCTTCGTTGATAAGTAGGACC 59.521 42.308 0.00 0.00 0.00 4.46
3128 3337 4.996788 TCTTCGTTGATAAGTAGGACCC 57.003 45.455 0.00 0.00 0.00 4.46
3129 3338 4.346730 TCTTCGTTGATAAGTAGGACCCA 58.653 43.478 0.00 0.00 0.00 4.51
3130 3339 4.960469 TCTTCGTTGATAAGTAGGACCCAT 59.040 41.667 0.00 0.00 0.00 4.00
3131 3340 4.665833 TCGTTGATAAGTAGGACCCATG 57.334 45.455 0.00 0.00 0.00 3.66
3132 3341 3.131396 CGTTGATAAGTAGGACCCATGC 58.869 50.000 0.00 0.00 0.00 4.06
3133 3342 3.477530 GTTGATAAGTAGGACCCATGCC 58.522 50.000 0.00 0.00 0.00 4.40
3134 3343 2.770447 TGATAAGTAGGACCCATGCCA 58.230 47.619 0.00 0.00 0.00 4.92
3135 3344 3.326521 TGATAAGTAGGACCCATGCCAT 58.673 45.455 0.00 0.00 0.00 4.40
3136 3345 3.327757 TGATAAGTAGGACCCATGCCATC 59.672 47.826 0.00 0.00 0.00 3.51
3137 3346 1.898863 AAGTAGGACCCATGCCATCT 58.101 50.000 0.00 0.00 0.00 2.90
3138 3347 1.135094 AGTAGGACCCATGCCATCTG 58.865 55.000 0.00 0.00 0.00 2.90
3139 3348 0.536006 GTAGGACCCATGCCATCTGC 60.536 60.000 0.00 0.00 41.77 4.26
3140 3349 1.708993 TAGGACCCATGCCATCTGCC 61.709 60.000 0.00 0.00 40.16 4.85
3141 3350 2.599597 GACCCATGCCATCTGCCT 59.400 61.111 0.00 0.00 40.16 4.75
3142 3351 1.076485 GACCCATGCCATCTGCCTT 60.076 57.895 0.00 0.00 40.16 4.35
3143 3352 0.183492 GACCCATGCCATCTGCCTTA 59.817 55.000 0.00 0.00 40.16 2.69
3144 3353 0.630673 ACCCATGCCATCTGCCTTAA 59.369 50.000 0.00 0.00 40.16 1.85
3145 3354 1.035139 CCCATGCCATCTGCCTTAAC 58.965 55.000 0.00 0.00 40.16 2.01
3146 3355 1.035139 CCATGCCATCTGCCTTAACC 58.965 55.000 0.00 0.00 40.16 2.85
3147 3356 1.035139 CATGCCATCTGCCTTAACCC 58.965 55.000 0.00 0.00 40.16 4.11
3148 3357 0.929244 ATGCCATCTGCCTTAACCCT 59.071 50.000 0.00 0.00 40.16 4.34
3149 3358 1.590591 TGCCATCTGCCTTAACCCTA 58.409 50.000 0.00 0.00 40.16 3.53
3150 3359 1.211949 TGCCATCTGCCTTAACCCTAC 59.788 52.381 0.00 0.00 40.16 3.18
3151 3360 1.211949 GCCATCTGCCTTAACCCTACA 59.788 52.381 0.00 0.00 0.00 2.74
3152 3361 2.746472 GCCATCTGCCTTAACCCTACAG 60.746 54.545 0.00 0.00 0.00 2.74
3153 3362 2.158755 CCATCTGCCTTAACCCTACAGG 60.159 54.545 0.00 0.00 43.78 4.00
3166 3375 4.357918 CCCTACAGGTATTCTGATTGGG 57.642 50.000 0.00 4.67 46.18 4.12
3167 3376 3.973973 CCCTACAGGTATTCTGATTGGGA 59.026 47.826 13.03 0.00 46.18 4.37
3168 3377 4.412199 CCCTACAGGTATTCTGATTGGGAA 59.588 45.833 13.03 0.00 46.18 3.97
3169 3378 5.104109 CCCTACAGGTATTCTGATTGGGAAA 60.104 44.000 13.03 0.00 46.18 3.13
3170 3379 6.058183 CCTACAGGTATTCTGATTGGGAAAG 58.942 44.000 0.00 0.00 46.18 2.62
3171 3380 4.273318 ACAGGTATTCTGATTGGGAAAGC 58.727 43.478 0.00 0.00 46.18 3.51
3172 3381 3.313526 CAGGTATTCTGATTGGGAAAGCG 59.686 47.826 0.00 0.00 46.18 4.68
3173 3382 3.054361 AGGTATTCTGATTGGGAAAGCGT 60.054 43.478 0.00 0.00 0.00 5.07
3174 3383 3.312697 GGTATTCTGATTGGGAAAGCGTC 59.687 47.826 0.00 0.00 0.00 5.19
3176 3385 0.984230 TCTGATTGGGAAAGCGTCCT 59.016 50.000 9.09 0.00 46.92 3.85
3177 3386 2.184533 TCTGATTGGGAAAGCGTCCTA 58.815 47.619 9.09 0.71 46.92 2.94
3178 3387 2.168521 TCTGATTGGGAAAGCGTCCTAG 59.831 50.000 9.09 0.00 46.92 3.02
3179 3388 1.906574 TGATTGGGAAAGCGTCCTAGT 59.093 47.619 9.09 0.53 46.92 2.57
3180 3389 2.304761 TGATTGGGAAAGCGTCCTAGTT 59.695 45.455 9.09 0.00 46.92 2.24
3181 3390 2.943036 TTGGGAAAGCGTCCTAGTTT 57.057 45.000 9.09 0.00 46.92 2.66
3182 3391 2.178912 TGGGAAAGCGTCCTAGTTTG 57.821 50.000 9.09 0.00 46.92 2.93
3183 3392 0.803117 GGGAAAGCGTCCTAGTTTGC 59.197 55.000 9.09 0.00 46.92 3.68
3184 3393 1.519408 GGAAAGCGTCCTAGTTTGCA 58.481 50.000 2.43 0.00 43.98 4.08
3185 3394 2.084546 GGAAAGCGTCCTAGTTTGCAT 58.915 47.619 2.43 0.00 43.98 3.96
3186 3395 2.159517 GGAAAGCGTCCTAGTTTGCATG 60.160 50.000 2.43 0.00 43.98 4.06
3187 3396 2.185004 AAGCGTCCTAGTTTGCATGT 57.815 45.000 0.00 0.00 0.00 3.21
3188 3397 2.185004 AGCGTCCTAGTTTGCATGTT 57.815 45.000 0.00 0.00 0.00 2.71
3189 3398 2.076863 AGCGTCCTAGTTTGCATGTTC 58.923 47.619 0.00 0.00 0.00 3.18
3190 3399 1.201921 GCGTCCTAGTTTGCATGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
3191 3400 2.066262 CGTCCTAGTTTGCATGTTCGT 58.934 47.619 0.00 0.00 0.00 3.85
3192 3401 2.092211 CGTCCTAGTTTGCATGTTCGTC 59.908 50.000 0.00 0.00 0.00 4.20
3193 3402 3.326747 GTCCTAGTTTGCATGTTCGTCT 58.673 45.455 0.00 0.00 0.00 4.18
3194 3403 3.368236 GTCCTAGTTTGCATGTTCGTCTC 59.632 47.826 0.00 0.00 0.00 3.36
3195 3404 2.673368 CCTAGTTTGCATGTTCGTCTCC 59.327 50.000 0.00 0.00 0.00 3.71
3196 3405 2.254546 AGTTTGCATGTTCGTCTCCA 57.745 45.000 0.00 0.00 0.00 3.86
3197 3406 2.571212 AGTTTGCATGTTCGTCTCCAA 58.429 42.857 0.00 0.00 0.00 3.53
3198 3407 2.948979 AGTTTGCATGTTCGTCTCCAAA 59.051 40.909 0.00 0.00 0.00 3.28
3199 3408 3.003689 AGTTTGCATGTTCGTCTCCAAAG 59.996 43.478 0.00 0.00 0.00 2.77
3200 3409 2.542020 TGCATGTTCGTCTCCAAAGA 57.458 45.000 0.00 0.00 0.00 2.52
3201 3410 2.844946 TGCATGTTCGTCTCCAAAGAA 58.155 42.857 0.00 0.00 31.93 2.52
3202 3411 2.548057 TGCATGTTCGTCTCCAAAGAAC 59.452 45.455 0.00 1.11 43.95 3.01
3203 3412 2.808543 GCATGTTCGTCTCCAAAGAACT 59.191 45.455 8.67 0.00 44.00 3.01
3204 3413 3.120511 GCATGTTCGTCTCCAAAGAACTC 60.121 47.826 8.67 0.00 44.00 3.01
3205 3414 4.310769 CATGTTCGTCTCCAAAGAACTCT 58.689 43.478 8.67 0.00 44.00 3.24
3206 3415 4.402056 TGTTCGTCTCCAAAGAACTCTT 57.598 40.909 8.67 0.00 44.00 2.85
3207 3416 4.369182 TGTTCGTCTCCAAAGAACTCTTC 58.631 43.478 8.67 0.00 44.00 2.87
3208 3417 4.099573 TGTTCGTCTCCAAAGAACTCTTCT 59.900 41.667 8.67 0.00 44.00 2.85
3219 3428 4.513198 AGAACTCTTCTTCGAACTCCTG 57.487 45.455 0.00 0.00 36.36 3.86
3220 3429 3.892588 AGAACTCTTCTTCGAACTCCTGT 59.107 43.478 0.00 0.00 36.36 4.00
3221 3430 4.342665 AGAACTCTTCTTCGAACTCCTGTT 59.657 41.667 0.00 0.00 36.36 3.16
3222 3431 4.245845 ACTCTTCTTCGAACTCCTGTTC 57.754 45.455 0.00 0.00 46.59 3.18
3223 3432 8.402623 AGAACTCTTCTTCGAACTCCTGTTCC 62.403 46.154 17.41 7.10 42.20 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.899502 ACTGTTAGATGTTCCAAGTCTGG 58.100 43.478 0.00 0.00 45.08 3.86
38 39 5.519566 TGCACAAAAGTGTCAATGATTCAAC 59.480 36.000 0.00 0.00 35.07 3.18
48 49 3.428725 GGTCACATTGCACAAAAGTGTCA 60.429 43.478 14.82 0.00 35.07 3.58
49 50 3.115554 GGTCACATTGCACAAAAGTGTC 58.884 45.455 14.82 11.12 35.07 3.67
60 62 5.329035 AGATTACATTTGGGTCACATTGC 57.671 39.130 0.00 0.00 0.00 3.56
65 67 4.092968 GTGACGAGATTACATTTGGGTCAC 59.907 45.833 5.38 5.38 43.93 3.67
71 73 4.695455 ACAAGGGTGACGAGATTACATTTG 59.305 41.667 0.00 0.00 0.00 2.32
177 189 5.993441 AGCCTTTCATTTTTGTGATCCAAAG 59.007 36.000 8.67 0.00 43.63 2.77
249 266 0.463654 TTCACCACTGAAAGCGCACT 60.464 50.000 11.47 0.00 37.60 4.40
363 454 6.635239 ACGTGTATAACTTTTGAAACATGTGC 59.365 34.615 0.00 0.00 36.14 4.57
365 456 7.166804 GCAACGTGTATAACTTTTGAAACATGT 59.833 33.333 0.00 0.00 38.39 3.21
404 495 2.976589 ACGTGTATAACTTTTCCCCCG 58.023 47.619 0.00 0.00 0.00 5.73
505 624 3.195661 AGAACGAAGAAACAGGTGTCAC 58.804 45.455 0.00 0.00 0.00 3.67
506 625 3.536956 AGAACGAAGAAACAGGTGTCA 57.463 42.857 0.00 0.00 0.00 3.58
507 626 4.571176 AGAAAGAACGAAGAAACAGGTGTC 59.429 41.667 0.00 0.00 0.00 3.67
508 627 4.332819 CAGAAAGAACGAAGAAACAGGTGT 59.667 41.667 0.00 0.00 0.00 4.16
509 628 4.570772 TCAGAAAGAACGAAGAAACAGGTG 59.429 41.667 0.00 0.00 0.00 4.00
510 629 4.766375 TCAGAAAGAACGAAGAAACAGGT 58.234 39.130 0.00 0.00 0.00 4.00
511 630 4.319118 GCTCAGAAAGAACGAAGAAACAGG 60.319 45.833 0.00 0.00 0.00 4.00
562 696 2.163613 CGCAAATTAGACAAGTTCCCCC 59.836 50.000 0.00 0.00 0.00 5.40
563 697 2.415491 GCGCAAATTAGACAAGTTCCCC 60.415 50.000 0.30 0.00 0.00 4.81
600 734 1.341156 CCTTACCCTGGGCTCCTGAG 61.341 65.000 14.08 0.00 0.00 3.35
620 754 3.701532 TGCGAGTTTTGTAGTTTTGGG 57.298 42.857 0.00 0.00 0.00 4.12
630 764 2.111756 GCAGTTGTCTTGCGAGTTTTG 58.888 47.619 0.00 0.00 0.00 2.44
637 783 0.657312 TTCTGTGCAGTTGTCTTGCG 59.343 50.000 0.00 0.00 0.00 4.85
638 784 2.849880 TTTCTGTGCAGTTGTCTTGC 57.150 45.000 0.00 0.00 0.00 4.01
639 785 3.100817 CGTTTTCTGTGCAGTTGTCTTG 58.899 45.455 0.00 0.00 0.00 3.02
640 786 2.747446 ACGTTTTCTGTGCAGTTGTCTT 59.253 40.909 0.00 0.00 0.00 3.01
641 787 2.351726 GACGTTTTCTGTGCAGTTGTCT 59.648 45.455 0.00 0.00 0.00 3.41
642 788 2.095213 TGACGTTTTCTGTGCAGTTGTC 59.905 45.455 0.00 3.15 0.00 3.18
643 789 2.080693 TGACGTTTTCTGTGCAGTTGT 58.919 42.857 0.00 0.00 0.00 3.32
644 790 2.159585 TGTGACGTTTTCTGTGCAGTTG 60.160 45.455 0.00 0.00 0.00 3.16
645 791 2.080693 TGTGACGTTTTCTGTGCAGTT 58.919 42.857 0.00 0.00 0.00 3.16
646 792 1.396996 GTGTGACGTTTTCTGTGCAGT 59.603 47.619 0.00 0.00 0.00 4.40
647 793 1.396648 TGTGTGACGTTTTCTGTGCAG 59.603 47.619 0.00 0.00 0.00 4.41
648 794 1.443802 TGTGTGACGTTTTCTGTGCA 58.556 45.000 0.00 0.00 0.00 4.57
690 836 5.612725 TGCTTTGTCTTGGAGGAAATTTT 57.387 34.783 0.00 0.00 0.00 1.82
728 874 5.473796 AACTACGTGTGGTGTTGTTTAAG 57.526 39.130 0.00 0.00 32.70 1.85
738 884 2.341176 GGCGGAACTACGTGTGGT 59.659 61.111 0.00 0.00 35.98 4.16
894 1044 0.404040 CTGCAGGTTTGGGGGACTTA 59.596 55.000 5.57 0.00 0.00 2.24
1450 1608 0.163788 GCACATACACACGCACTGTC 59.836 55.000 0.00 0.00 0.00 3.51
1835 2002 1.100510 AGCTGCGTGCAATCAATCAT 58.899 45.000 4.37 0.00 45.94 2.45
1938 2105 1.271325 CCACACCAACACCATAGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
1999 2166 1.690985 CTTCACTCCCCTCCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
2380 2563 2.565391 TGGTTCTCGAACTTGCCAGATA 59.435 45.455 9.41 0.00 40.94 1.98
2459 2642 1.448985 GTAGGCCGCAAAGTCAATGA 58.551 50.000 0.00 0.00 0.00 2.57
2471 2654 6.037786 TGAATATCTTCATAAGGTAGGCCG 57.962 41.667 0.00 0.00 36.46 6.13
2479 2662 8.674263 AAACCTCAGCTGAATATCTTCATAAG 57.326 34.615 18.85 0.70 40.52 1.73
2538 2721 2.045143 GGAGGAGAGGACGACGGT 60.045 66.667 0.00 0.00 0.00 4.83
2542 2751 2.043852 GGCTGGAGGAGAGGACGA 60.044 66.667 0.00 0.00 0.00 4.20
2631 2840 2.043953 GCGGGGAAAGAAGGGCAT 60.044 61.111 0.00 0.00 0.00 4.40
2632 2841 3.256960 AGCGGGGAAAGAAGGGCA 61.257 61.111 0.00 0.00 0.00 5.36
2675 2884 4.814294 GAGTACCACCGCCGCCAG 62.814 72.222 0.00 0.00 0.00 4.85
2677 2886 4.814294 CTGAGTACCACCGCCGCC 62.814 72.222 0.00 0.00 0.00 6.13
2679 2888 3.760035 AGCTGAGTACCACCGCCG 61.760 66.667 0.00 0.00 0.00 6.46
2680 2889 2.125512 CAGCTGAGTACCACCGCC 60.126 66.667 8.42 0.00 0.00 6.13
2681 2890 2.125512 CCAGCTGAGTACCACCGC 60.126 66.667 17.39 0.00 0.00 5.68
2682 2891 1.079819 CACCAGCTGAGTACCACCG 60.080 63.158 17.39 0.00 0.00 4.94
2683 2892 0.905357 ATCACCAGCTGAGTACCACC 59.095 55.000 17.39 0.00 30.20 4.61
2684 2893 1.406069 CCATCACCAGCTGAGTACCAC 60.406 57.143 17.39 0.00 30.20 4.16
2685 2894 0.904649 CCATCACCAGCTGAGTACCA 59.095 55.000 17.39 0.00 30.20 3.25
2686 2895 0.905357 ACCATCACCAGCTGAGTACC 59.095 55.000 17.39 0.00 30.20 3.34
2687 2896 2.009042 GCACCATCACCAGCTGAGTAC 61.009 57.143 17.39 0.00 30.20 2.73
2688 2897 0.250234 GCACCATCACCAGCTGAGTA 59.750 55.000 17.39 0.00 30.20 2.59
2689 2898 1.002868 GCACCATCACCAGCTGAGT 60.003 57.895 17.39 8.77 30.20 3.41
2690 2899 2.104859 CGCACCATCACCAGCTGAG 61.105 63.158 17.39 8.04 30.20 3.35
2691 2900 2.046988 CGCACCATCACCAGCTGA 60.047 61.111 17.39 0.00 0.00 4.26
2692 2901 3.129502 CCGCACCATCACCAGCTG 61.130 66.667 6.78 6.78 0.00 4.24
2695 2904 2.360350 AAGCCGCACCATCACCAG 60.360 61.111 0.00 0.00 0.00 4.00
2696 2905 2.672651 CAAGCCGCACCATCACCA 60.673 61.111 0.00 0.00 0.00 4.17
2697 2906 3.443045 CCAAGCCGCACCATCACC 61.443 66.667 0.00 0.00 0.00 4.02
2698 2907 2.672996 ACCAAGCCGCACCATCAC 60.673 61.111 0.00 0.00 0.00 3.06
2699 2908 2.672651 CACCAAGCCGCACCATCA 60.673 61.111 0.00 0.00 0.00 3.07
2700 2909 3.443045 CCACCAAGCCGCACCATC 61.443 66.667 0.00 0.00 0.00 3.51
2717 2926 2.502130 CTCTCTTCCTTCTAACACCCCC 59.498 54.545 0.00 0.00 0.00 5.40
2718 2927 3.442076 TCTCTCTTCCTTCTAACACCCC 58.558 50.000 0.00 0.00 0.00 4.95
2719 2928 3.449377 CCTCTCTCTTCCTTCTAACACCC 59.551 52.174 0.00 0.00 0.00 4.61
2720 2929 4.345854 TCCTCTCTCTTCCTTCTAACACC 58.654 47.826 0.00 0.00 0.00 4.16
2721 2930 6.337356 CAATCCTCTCTCTTCCTTCTAACAC 58.663 44.000 0.00 0.00 0.00 3.32
2722 2931 5.423610 CCAATCCTCTCTCTTCCTTCTAACA 59.576 44.000 0.00 0.00 0.00 2.41
2723 2932 5.423931 ACCAATCCTCTCTCTTCCTTCTAAC 59.576 44.000 0.00 0.00 0.00 2.34
2724 2933 5.423610 CACCAATCCTCTCTCTTCCTTCTAA 59.576 44.000 0.00 0.00 0.00 2.10
2725 2934 4.959210 CACCAATCCTCTCTCTTCCTTCTA 59.041 45.833 0.00 0.00 0.00 2.10
2726 2935 3.774216 CACCAATCCTCTCTCTTCCTTCT 59.226 47.826 0.00 0.00 0.00 2.85
2727 2936 3.118445 CCACCAATCCTCTCTCTTCCTTC 60.118 52.174 0.00 0.00 0.00 3.46
2728 2937 2.843113 CCACCAATCCTCTCTCTTCCTT 59.157 50.000 0.00 0.00 0.00 3.36
2729 2938 2.045047 TCCACCAATCCTCTCTCTTCCT 59.955 50.000 0.00 0.00 0.00 3.36
2730 2939 2.472029 TCCACCAATCCTCTCTCTTCC 58.528 52.381 0.00 0.00 0.00 3.46
2731 2940 4.769345 ATTCCACCAATCCTCTCTCTTC 57.231 45.455 0.00 0.00 0.00 2.87
2732 2941 4.290722 ACAATTCCACCAATCCTCTCTCTT 59.709 41.667 0.00 0.00 0.00 2.85
2733 2942 3.848975 ACAATTCCACCAATCCTCTCTCT 59.151 43.478 0.00 0.00 0.00 3.10
2734 2943 4.227864 ACAATTCCACCAATCCTCTCTC 57.772 45.455 0.00 0.00 0.00 3.20
2735 2944 4.043310 TCAACAATTCCACCAATCCTCTCT 59.957 41.667 0.00 0.00 0.00 3.10
2736 2945 4.335416 TCAACAATTCCACCAATCCTCTC 58.665 43.478 0.00 0.00 0.00 3.20
2737 2946 4.387026 TCAACAATTCCACCAATCCTCT 57.613 40.909 0.00 0.00 0.00 3.69
2738 2947 4.463891 ACATCAACAATTCCACCAATCCTC 59.536 41.667 0.00 0.00 0.00 3.71
2739 2948 4.419282 ACATCAACAATTCCACCAATCCT 58.581 39.130 0.00 0.00 0.00 3.24
2740 2949 4.806640 ACATCAACAATTCCACCAATCC 57.193 40.909 0.00 0.00 0.00 3.01
2741 2950 6.256321 GCAATACATCAACAATTCCACCAATC 59.744 38.462 0.00 0.00 0.00 2.67
2742 2951 6.070653 AGCAATACATCAACAATTCCACCAAT 60.071 34.615 0.00 0.00 0.00 3.16
2743 2952 5.245751 AGCAATACATCAACAATTCCACCAA 59.754 36.000 0.00 0.00 0.00 3.67
2744 2953 4.771577 AGCAATACATCAACAATTCCACCA 59.228 37.500 0.00 0.00 0.00 4.17
2745 2954 5.329035 AGCAATACATCAACAATTCCACC 57.671 39.130 0.00 0.00 0.00 4.61
2746 2955 6.389091 TCAAGCAATACATCAACAATTCCAC 58.611 36.000 0.00 0.00 0.00 4.02
2747 2956 6.587206 TCAAGCAATACATCAACAATTCCA 57.413 33.333 0.00 0.00 0.00 3.53
2748 2957 5.517770 GCTCAAGCAATACATCAACAATTCC 59.482 40.000 0.00 0.00 41.59 3.01
2749 2958 5.517770 GGCTCAAGCAATACATCAACAATTC 59.482 40.000 4.13 0.00 44.36 2.17
2750 2959 5.186409 AGGCTCAAGCAATACATCAACAATT 59.814 36.000 4.13 0.00 44.36 2.32
2751 2960 4.708421 AGGCTCAAGCAATACATCAACAAT 59.292 37.500 4.13 0.00 44.36 2.71
2752 2961 4.081406 AGGCTCAAGCAATACATCAACAA 58.919 39.130 4.13 0.00 44.36 2.83
2753 2962 3.689347 AGGCTCAAGCAATACATCAACA 58.311 40.909 4.13 0.00 44.36 3.33
2754 2963 3.691118 TGAGGCTCAAGCAATACATCAAC 59.309 43.478 16.28 0.00 44.36 3.18
2755 2964 3.954200 TGAGGCTCAAGCAATACATCAA 58.046 40.909 16.28 0.00 44.36 2.57
2756 2965 3.632643 TGAGGCTCAAGCAATACATCA 57.367 42.857 16.28 0.00 44.36 3.07
2757 2966 3.252701 CCATGAGGCTCAAGCAATACATC 59.747 47.826 22.84 0.00 44.36 3.06
2758 2967 3.220110 CCATGAGGCTCAAGCAATACAT 58.780 45.455 22.84 0.00 44.36 2.29
2759 2968 2.646930 CCATGAGGCTCAAGCAATACA 58.353 47.619 22.84 0.00 44.36 2.29
2760 2969 1.952296 CCCATGAGGCTCAAGCAATAC 59.048 52.381 22.84 0.00 44.36 1.89
2761 2970 2.353357 CCCATGAGGCTCAAGCAATA 57.647 50.000 22.84 0.00 44.36 1.90
2762 2971 3.202548 CCCATGAGGCTCAAGCAAT 57.797 52.632 22.84 0.66 44.36 3.56
2763 2972 4.749323 CCCATGAGGCTCAAGCAA 57.251 55.556 22.84 0.00 44.36 3.91
2772 2981 7.730332 TGTACTCCTATATATATGCCCATGAGG 59.270 40.741 5.44 2.71 39.47 3.86
2773 2982 8.712228 TGTACTCCTATATATATGCCCATGAG 57.288 38.462 5.44 4.97 0.00 2.90
2774 2983 9.147732 CTTGTACTCCTATATATATGCCCATGA 57.852 37.037 5.44 0.00 0.00 3.07
2775 2984 8.370940 CCTTGTACTCCTATATATATGCCCATG 58.629 40.741 5.44 0.00 0.00 3.66
2776 2985 8.074363 ACCTTGTACTCCTATATATATGCCCAT 58.926 37.037 5.44 0.00 0.00 4.00
2777 2986 7.427501 ACCTTGTACTCCTATATATATGCCCA 58.572 38.462 5.44 0.00 0.00 5.36
2778 2987 7.255520 CGACCTTGTACTCCTATATATATGCCC 60.256 44.444 5.44 0.00 0.00 5.36
2779 2988 7.284944 ACGACCTTGTACTCCTATATATATGCC 59.715 40.741 5.44 0.00 0.00 4.40
2780 2989 8.223177 ACGACCTTGTACTCCTATATATATGC 57.777 38.462 5.44 0.00 0.00 3.14
2781 2990 9.616156 AGACGACCTTGTACTCCTATATATATG 57.384 37.037 5.44 0.00 0.00 1.78
2783 2992 9.445878 CAAGACGACCTTGTACTCCTATATATA 57.554 37.037 12.04 0.00 45.52 0.86
2784 2993 8.338072 CAAGACGACCTTGTACTCCTATATAT 57.662 38.462 12.04 0.00 45.52 0.86
2785 2994 7.741027 CAAGACGACCTTGTACTCCTATATA 57.259 40.000 12.04 0.00 45.52 0.86
2786 2995 6.636562 CAAGACGACCTTGTACTCCTATAT 57.363 41.667 12.04 0.00 45.52 0.86
2788 2997 4.985538 CAAGACGACCTTGTACTCCTAT 57.014 45.455 12.04 0.00 45.52 2.57
2807 3016 2.173782 TCCACCTTGCCTTGTACTTCAA 59.826 45.455 0.00 0.00 34.61 2.69
2808 3017 1.771854 TCCACCTTGCCTTGTACTTCA 59.228 47.619 0.00 0.00 0.00 3.02
2809 3018 2.561478 TCCACCTTGCCTTGTACTTC 57.439 50.000 0.00 0.00 0.00 3.01
2810 3019 3.525800 ATTCCACCTTGCCTTGTACTT 57.474 42.857 0.00 0.00 0.00 2.24
2811 3020 4.650972 TTATTCCACCTTGCCTTGTACT 57.349 40.909 0.00 0.00 0.00 2.73
2812 3021 5.163550 GGATTTATTCCACCTTGCCTTGTAC 60.164 44.000 0.00 0.00 44.74 2.90
2813 3022 4.953579 GGATTTATTCCACCTTGCCTTGTA 59.046 41.667 0.00 0.00 44.74 2.41
2814 3023 3.769300 GGATTTATTCCACCTTGCCTTGT 59.231 43.478 0.00 0.00 44.74 3.16
2815 3024 4.391405 GGATTTATTCCACCTTGCCTTG 57.609 45.455 0.00 0.00 44.74 3.61
2826 3035 7.783042 ACATAGGATAGCGTAGGATTTATTCC 58.217 38.462 0.00 0.00 45.85 3.01
2827 3036 9.654663 AAACATAGGATAGCGTAGGATTTATTC 57.345 33.333 0.00 0.00 0.00 1.75
2828 3037 9.654663 GAAACATAGGATAGCGTAGGATTTATT 57.345 33.333 0.00 0.00 0.00 1.40
2829 3038 8.258708 GGAAACATAGGATAGCGTAGGATTTAT 58.741 37.037 0.00 0.00 0.00 1.40
2830 3039 7.233962 TGGAAACATAGGATAGCGTAGGATTTA 59.766 37.037 0.00 0.00 33.40 1.40
2831 3040 6.042781 TGGAAACATAGGATAGCGTAGGATTT 59.957 38.462 0.00 0.00 33.40 2.17
2832 3041 5.542635 TGGAAACATAGGATAGCGTAGGATT 59.457 40.000 0.00 0.00 33.40 3.01
2833 3042 5.084519 TGGAAACATAGGATAGCGTAGGAT 58.915 41.667 0.00 0.00 33.40 3.24
2834 3043 4.476297 TGGAAACATAGGATAGCGTAGGA 58.524 43.478 0.00 0.00 33.40 2.94
2835 3044 4.866508 TGGAAACATAGGATAGCGTAGG 57.133 45.455 0.00 0.00 33.40 3.18
2867 3076 2.633488 GGAACCCTGCTGTTGAGTATC 58.367 52.381 0.00 0.00 0.00 2.24
2868 3077 1.066143 CGGAACCCTGCTGTTGAGTAT 60.066 52.381 0.00 0.00 0.00 2.12
2869 3078 0.320374 CGGAACCCTGCTGTTGAGTA 59.680 55.000 0.00 0.00 0.00 2.59
2870 3079 1.071471 CGGAACCCTGCTGTTGAGT 59.929 57.895 0.00 0.00 0.00 3.41
2871 3080 2.328099 GCGGAACCCTGCTGTTGAG 61.328 63.158 0.00 0.00 41.43 3.02
2872 3081 2.281484 GCGGAACCCTGCTGTTGA 60.281 61.111 0.00 0.00 41.43 3.18
2873 3082 3.726517 CGCGGAACCCTGCTGTTG 61.727 66.667 0.00 0.00 42.47 3.33
2899 3108 4.083862 GAGTCGGGTCCCCACAGC 62.084 72.222 8.54 0.00 35.37 4.40
2900 3109 0.686441 TATGAGTCGGGTCCCCACAG 60.686 60.000 8.54 0.00 35.37 3.66
2901 3110 0.252330 TTATGAGTCGGGTCCCCACA 60.252 55.000 8.54 0.00 35.37 4.17
2902 3111 0.464452 CTTATGAGTCGGGTCCCCAC 59.536 60.000 1.00 0.00 35.37 4.61
2903 3112 0.042131 ACTTATGAGTCGGGTCCCCA 59.958 55.000 1.00 0.00 35.37 4.96
2904 3113 0.751452 GACTTATGAGTCGGGTCCCC 59.249 60.000 1.00 0.00 42.60 4.81
2913 3122 3.542648 TCGGTGATCTCGACTTATGAGT 58.457 45.455 7.46 0.00 39.32 3.41
2914 3123 4.553756 TTCGGTGATCTCGACTTATGAG 57.446 45.455 10.38 0.00 36.30 2.90
2915 3124 4.793028 GCATTCGGTGATCTCGACTTATGA 60.793 45.833 17.77 4.78 36.30 2.15
2916 3125 3.426859 GCATTCGGTGATCTCGACTTATG 59.573 47.826 10.38 11.96 36.30 1.90
2917 3126 3.068165 TGCATTCGGTGATCTCGACTTAT 59.932 43.478 10.38 1.55 36.30 1.73
2918 3127 2.425668 TGCATTCGGTGATCTCGACTTA 59.574 45.455 10.38 0.00 36.30 2.24
2919 3128 1.204704 TGCATTCGGTGATCTCGACTT 59.795 47.619 10.38 1.19 36.30 3.01
2920 3129 0.817654 TGCATTCGGTGATCTCGACT 59.182 50.000 10.38 4.24 36.30 4.18
2921 3130 0.924090 GTGCATTCGGTGATCTCGAC 59.076 55.000 10.38 2.52 36.30 4.20
2922 3131 0.525455 CGTGCATTCGGTGATCTCGA 60.525 55.000 7.46 7.46 34.62 4.04
2923 3132 0.802222 ACGTGCATTCGGTGATCTCG 60.802 55.000 1.59 0.00 34.94 4.04
2924 3133 0.647410 CACGTGCATTCGGTGATCTC 59.353 55.000 0.82 0.00 34.94 2.75
2925 3134 0.037326 ACACGTGCATTCGGTGATCT 60.037 50.000 17.22 0.00 34.94 2.75
2926 3135 1.323534 GTACACGTGCATTCGGTGATC 59.676 52.381 17.22 0.00 34.94 2.92
2927 3136 1.337354 TGTACACGTGCATTCGGTGAT 60.337 47.619 17.22 0.00 34.94 3.06
2928 3137 0.032267 TGTACACGTGCATTCGGTGA 59.968 50.000 17.22 0.00 34.94 4.02
2929 3138 0.438445 CTGTACACGTGCATTCGGTG 59.562 55.000 17.22 5.33 34.94 4.94
2930 3139 0.032952 ACTGTACACGTGCATTCGGT 59.967 50.000 17.22 11.47 34.94 4.69
2931 3140 0.438445 CACTGTACACGTGCATTCGG 59.562 55.000 17.22 10.84 34.94 4.30
2932 3141 1.414378 TCACTGTACACGTGCATTCG 58.586 50.000 17.22 3.13 32.54 3.34
2933 3142 2.348666 GGATCACTGTACACGTGCATTC 59.651 50.000 17.22 4.22 32.54 2.67
2934 3143 2.346803 GGATCACTGTACACGTGCATT 58.653 47.619 17.22 0.00 32.54 3.56
2935 3144 1.405526 GGGATCACTGTACACGTGCAT 60.406 52.381 17.22 0.00 32.54 3.96
2936 3145 0.037697 GGGATCACTGTACACGTGCA 60.038 55.000 17.22 5.50 32.54 4.57
2937 3146 0.037697 TGGGATCACTGTACACGTGC 60.038 55.000 17.22 0.00 32.54 5.34
2938 3147 1.544246 TCTGGGATCACTGTACACGTG 59.456 52.381 15.48 15.48 0.00 4.49
2939 3148 1.819288 CTCTGGGATCACTGTACACGT 59.181 52.381 0.00 0.00 0.00 4.49
2940 3149 2.092323 TCTCTGGGATCACTGTACACG 58.908 52.381 0.00 0.00 0.00 4.49
2951 3160 3.047115 AGTGAGCATTGATCTCTGGGAT 58.953 45.455 5.75 0.00 37.37 3.85
2952 3161 2.169978 CAGTGAGCATTGATCTCTGGGA 59.830 50.000 20.68 0.00 36.39 4.37
2953 3162 2.169978 TCAGTGAGCATTGATCTCTGGG 59.830 50.000 25.26 8.81 39.18 4.45
2954 3163 3.538634 TCAGTGAGCATTGATCTCTGG 57.461 47.619 25.26 12.68 39.18 3.86
2955 3164 4.093115 GTGTTCAGTGAGCATTGATCTCTG 59.907 45.833 21.84 21.84 39.77 3.35
2956 3165 4.252073 GTGTTCAGTGAGCATTGATCTCT 58.748 43.478 13.12 2.01 0.00 3.10
2957 3166 3.999001 TGTGTTCAGTGAGCATTGATCTC 59.001 43.478 13.12 0.00 0.00 2.75
2958 3167 3.750130 GTGTGTTCAGTGAGCATTGATCT 59.250 43.478 13.12 0.00 0.00 2.75
2959 3168 3.499537 TGTGTGTTCAGTGAGCATTGATC 59.500 43.478 13.12 0.51 0.00 2.92
2960 3169 3.479489 TGTGTGTTCAGTGAGCATTGAT 58.521 40.909 13.12 0.00 0.00 2.57
2961 3170 2.874086 CTGTGTGTTCAGTGAGCATTGA 59.126 45.455 13.12 0.00 0.00 2.57
2962 3171 2.874086 TCTGTGTGTTCAGTGAGCATTG 59.126 45.455 13.12 4.46 36.85 2.82
2963 3172 3.198409 TCTGTGTGTTCAGTGAGCATT 57.802 42.857 13.12 0.00 36.85 3.56
2964 3173 2.916702 TCTGTGTGTTCAGTGAGCAT 57.083 45.000 13.12 0.00 36.85 3.79
2965 3174 2.554142 CTTCTGTGTGTTCAGTGAGCA 58.446 47.619 5.45 5.45 36.85 4.26
2966 3175 1.262683 GCTTCTGTGTGTTCAGTGAGC 59.737 52.381 0.00 0.00 37.92 4.26
2967 3176 2.543012 CAGCTTCTGTGTGTTCAGTGAG 59.457 50.000 0.00 0.00 36.85 3.51
2968 3177 2.168313 TCAGCTTCTGTGTGTTCAGTGA 59.832 45.455 0.00 0.00 36.85 3.41
2969 3178 2.554142 TCAGCTTCTGTGTGTTCAGTG 58.446 47.619 0.00 0.00 36.85 3.66
2970 3179 2.988010 TCAGCTTCTGTGTGTTCAGT 57.012 45.000 0.00 0.00 36.85 3.41
2971 3180 5.237127 TGTTATTCAGCTTCTGTGTGTTCAG 59.763 40.000 0.00 0.00 36.85 3.02
2972 3181 5.122519 TGTTATTCAGCTTCTGTGTGTTCA 58.877 37.500 0.00 0.00 32.61 3.18
2973 3182 5.673337 TGTTATTCAGCTTCTGTGTGTTC 57.327 39.130 0.00 0.00 32.61 3.18
2974 3183 5.822519 TCTTGTTATTCAGCTTCTGTGTGTT 59.177 36.000 0.00 0.00 32.61 3.32
2975 3184 5.368145 TCTTGTTATTCAGCTTCTGTGTGT 58.632 37.500 0.00 0.00 32.61 3.72
2976 3185 5.468072 ACTCTTGTTATTCAGCTTCTGTGTG 59.532 40.000 0.00 0.00 32.61 3.82
2977 3186 5.615289 ACTCTTGTTATTCAGCTTCTGTGT 58.385 37.500 0.00 0.00 32.61 3.72
2978 3187 5.931146 AGACTCTTGTTATTCAGCTTCTGTG 59.069 40.000 0.00 0.00 32.61 3.66
2979 3188 6.107901 AGACTCTTGTTATTCAGCTTCTGT 57.892 37.500 0.00 0.00 32.61 3.41
2980 3189 7.600375 TGTAAGACTCTTGTTATTCAGCTTCTG 59.400 37.037 1.17 0.00 0.00 3.02
2981 3190 7.671302 TGTAAGACTCTTGTTATTCAGCTTCT 58.329 34.615 1.17 0.00 0.00 2.85
2982 3191 7.891183 TGTAAGACTCTTGTTATTCAGCTTC 57.109 36.000 1.17 0.00 0.00 3.86
2983 3192 7.550906 GGATGTAAGACTCTTGTTATTCAGCTT 59.449 37.037 1.17 0.00 0.00 3.74
2984 3193 7.044798 GGATGTAAGACTCTTGTTATTCAGCT 58.955 38.462 1.17 0.00 0.00 4.24
2985 3194 6.818644 TGGATGTAAGACTCTTGTTATTCAGC 59.181 38.462 1.17 0.00 0.00 4.26
2986 3195 8.954950 ATGGATGTAAGACTCTTGTTATTCAG 57.045 34.615 1.17 0.00 0.00 3.02
2987 3196 9.817809 GTATGGATGTAAGACTCTTGTTATTCA 57.182 33.333 1.17 0.00 0.00 2.57
2988 3197 9.817809 TGTATGGATGTAAGACTCTTGTTATTC 57.182 33.333 1.17 0.00 0.00 1.75
2992 3201 8.204836 GGTATGTATGGATGTAAGACTCTTGTT 58.795 37.037 1.17 0.00 0.00 2.83
2993 3202 7.470147 CGGTATGTATGGATGTAAGACTCTTGT 60.470 40.741 1.17 0.00 0.00 3.16
2994 3203 6.863645 CGGTATGTATGGATGTAAGACTCTTG 59.136 42.308 1.17 0.00 0.00 3.02
2995 3204 6.550108 ACGGTATGTATGGATGTAAGACTCTT 59.450 38.462 0.00 0.00 0.00 2.85
2996 3205 6.069331 ACGGTATGTATGGATGTAAGACTCT 58.931 40.000 0.00 0.00 0.00 3.24
2997 3206 6.207025 AGACGGTATGTATGGATGTAAGACTC 59.793 42.308 0.00 0.00 0.00 3.36
2998 3207 6.069331 AGACGGTATGTATGGATGTAAGACT 58.931 40.000 0.00 0.00 0.00 3.24
2999 3208 6.328641 AGACGGTATGTATGGATGTAAGAC 57.671 41.667 0.00 0.00 0.00 3.01
3000 3209 6.971726 AAGACGGTATGTATGGATGTAAGA 57.028 37.500 0.00 0.00 0.00 2.10
3001 3210 7.654568 TGTAAGACGGTATGTATGGATGTAAG 58.345 38.462 0.00 0.00 0.00 2.34
3002 3211 7.585579 TGTAAGACGGTATGTATGGATGTAA 57.414 36.000 0.00 0.00 0.00 2.41
3003 3212 7.585579 TTGTAAGACGGTATGTATGGATGTA 57.414 36.000 0.00 0.00 0.00 2.29
3004 3213 6.474140 TTGTAAGACGGTATGTATGGATGT 57.526 37.500 0.00 0.00 0.00 3.06
3005 3214 7.780008 TTTTGTAAGACGGTATGTATGGATG 57.220 36.000 0.00 0.00 0.00 3.51
3006 3215 8.974060 ATTTTTGTAAGACGGTATGTATGGAT 57.026 30.769 0.00 0.00 0.00 3.41
3007 3216 8.795842 AATTTTTGTAAGACGGTATGTATGGA 57.204 30.769 0.00 0.00 0.00 3.41
3008 3217 9.925268 GTAATTTTTGTAAGACGGTATGTATGG 57.075 33.333 0.00 0.00 0.00 2.74
3009 3218 9.627657 CGTAATTTTTGTAAGACGGTATGTATG 57.372 33.333 0.00 0.00 0.00 2.39
3010 3219 9.585099 TCGTAATTTTTGTAAGACGGTATGTAT 57.415 29.630 0.00 0.00 0.00 2.29
3011 3220 8.859156 GTCGTAATTTTTGTAAGACGGTATGTA 58.141 33.333 0.00 0.00 0.00 2.29
3012 3221 7.148590 GGTCGTAATTTTTGTAAGACGGTATGT 60.149 37.037 0.00 0.00 32.67 2.29
3013 3222 7.148606 TGGTCGTAATTTTTGTAAGACGGTATG 60.149 37.037 0.00 0.00 32.67 2.39
3014 3223 6.873076 TGGTCGTAATTTTTGTAAGACGGTAT 59.127 34.615 0.00 0.00 32.67 2.73
3015 3224 6.219473 TGGTCGTAATTTTTGTAAGACGGTA 58.781 36.000 0.00 0.00 32.67 4.02
3016 3225 5.055812 TGGTCGTAATTTTTGTAAGACGGT 58.944 37.500 0.00 0.00 32.67 4.83
3017 3226 5.594724 TGGTCGTAATTTTTGTAAGACGG 57.405 39.130 0.00 0.00 32.67 4.79
3021 3230 9.659830 GCCTATAATGGTCGTAATTTTTGTAAG 57.340 33.333 0.00 0.00 0.00 2.34
3022 3231 9.175312 TGCCTATAATGGTCGTAATTTTTGTAA 57.825 29.630 0.00 0.00 0.00 2.41
3023 3232 8.734218 TGCCTATAATGGTCGTAATTTTTGTA 57.266 30.769 0.00 0.00 0.00 2.41
3024 3233 7.633193 TGCCTATAATGGTCGTAATTTTTGT 57.367 32.000 0.00 0.00 0.00 2.83
3025 3234 8.188139 ACTTGCCTATAATGGTCGTAATTTTTG 58.812 33.333 0.00 0.00 0.00 2.44
3026 3235 8.288689 ACTTGCCTATAATGGTCGTAATTTTT 57.711 30.769 0.00 0.00 0.00 1.94
3027 3236 7.773690 AGACTTGCCTATAATGGTCGTAATTTT 59.226 33.333 0.00 0.00 0.00 1.82
3028 3237 7.280356 AGACTTGCCTATAATGGTCGTAATTT 58.720 34.615 0.00 0.00 0.00 1.82
3029 3238 6.827727 AGACTTGCCTATAATGGTCGTAATT 58.172 36.000 0.00 0.00 0.00 1.40
3030 3239 6.420913 AGACTTGCCTATAATGGTCGTAAT 57.579 37.500 0.00 0.00 0.00 1.89
3031 3240 5.864418 AGACTTGCCTATAATGGTCGTAA 57.136 39.130 0.00 0.00 0.00 3.18
3032 3241 5.864418 AAGACTTGCCTATAATGGTCGTA 57.136 39.130 0.00 0.00 0.00 3.43
3033 3242 4.755266 AAGACTTGCCTATAATGGTCGT 57.245 40.909 0.00 0.00 0.00 4.34
3034 3243 5.597806 TGTAAGACTTGCCTATAATGGTCG 58.402 41.667 0.00 0.00 0.00 4.79
3035 3244 8.585881 TCTATGTAAGACTTGCCTATAATGGTC 58.414 37.037 0.00 0.00 0.00 4.02
3036 3245 8.492415 TCTATGTAAGACTTGCCTATAATGGT 57.508 34.615 0.00 0.00 0.00 3.55
3041 3250 9.179909 GCTCTATCTATGTAAGACTTGCCTATA 57.820 37.037 0.00 0.00 36.93 1.31
3042 3251 7.123547 GGCTCTATCTATGTAAGACTTGCCTAT 59.876 40.741 0.00 0.00 36.93 2.57
3043 3252 6.434652 GGCTCTATCTATGTAAGACTTGCCTA 59.565 42.308 0.00 0.00 36.93 3.93
3044 3253 5.245075 GGCTCTATCTATGTAAGACTTGCCT 59.755 44.000 0.00 0.00 36.93 4.75
3045 3254 5.245075 AGGCTCTATCTATGTAAGACTTGCC 59.755 44.000 0.00 0.00 38.70 4.52
3046 3255 6.015856 TGAGGCTCTATCTATGTAAGACTTGC 60.016 42.308 16.72 0.00 36.93 4.01
3047 3256 7.517614 TGAGGCTCTATCTATGTAAGACTTG 57.482 40.000 16.72 0.00 36.93 3.16
3048 3257 7.232534 CCTTGAGGCTCTATCTATGTAAGACTT 59.767 40.741 16.72 0.00 36.93 3.01
3049 3258 6.719370 CCTTGAGGCTCTATCTATGTAAGACT 59.281 42.308 16.72 0.00 36.93 3.24
3050 3259 6.071616 CCCTTGAGGCTCTATCTATGTAAGAC 60.072 46.154 16.72 0.00 36.93 3.01
3051 3260 6.013379 CCCTTGAGGCTCTATCTATGTAAGA 58.987 44.000 16.72 0.00 39.02 2.10
3052 3261 6.279513 CCCTTGAGGCTCTATCTATGTAAG 57.720 45.833 16.72 7.21 0.00 2.34
3067 3276 0.250295 TTGACGTTCAGCCCTTGAGG 60.250 55.000 0.00 0.00 37.07 3.86
3068 3277 1.593196 TTTGACGTTCAGCCCTTGAG 58.407 50.000 0.00 0.00 37.07 3.02
3069 3278 2.270352 ATTTGACGTTCAGCCCTTGA 57.730 45.000 0.00 0.00 0.00 3.02
3070 3279 4.023193 AGTTTATTTGACGTTCAGCCCTTG 60.023 41.667 0.00 0.00 0.00 3.61
3071 3280 4.142038 AGTTTATTTGACGTTCAGCCCTT 58.858 39.130 0.00 0.00 0.00 3.95
3072 3281 3.751518 AGTTTATTTGACGTTCAGCCCT 58.248 40.909 0.00 0.00 0.00 5.19
3073 3282 3.500680 TGAGTTTATTTGACGTTCAGCCC 59.499 43.478 0.00 0.00 0.00 5.19
3074 3283 4.742438 TGAGTTTATTTGACGTTCAGCC 57.258 40.909 0.00 0.00 0.00 4.85
3075 3284 4.613031 GCTTGAGTTTATTTGACGTTCAGC 59.387 41.667 0.00 0.00 0.00 4.26
3076 3285 5.747565 TGCTTGAGTTTATTTGACGTTCAG 58.252 37.500 0.00 0.00 0.00 3.02
3077 3286 5.743026 TGCTTGAGTTTATTTGACGTTCA 57.257 34.783 0.00 0.00 0.00 3.18
3078 3287 4.613031 GCTGCTTGAGTTTATTTGACGTTC 59.387 41.667 0.00 0.00 0.00 3.95
3079 3288 4.537015 GCTGCTTGAGTTTATTTGACGTT 58.463 39.130 0.00 0.00 0.00 3.99
3080 3289 3.363970 CGCTGCTTGAGTTTATTTGACGT 60.364 43.478 0.00 0.00 0.00 4.34
3081 3290 3.155998 CGCTGCTTGAGTTTATTTGACG 58.844 45.455 0.00 0.00 0.00 4.35
3082 3291 3.188460 TCCGCTGCTTGAGTTTATTTGAC 59.812 43.478 0.00 0.00 0.00 3.18
3083 3292 3.407698 TCCGCTGCTTGAGTTTATTTGA 58.592 40.909 0.00 0.00 0.00 2.69
3084 3293 3.829886 TCCGCTGCTTGAGTTTATTTG 57.170 42.857 0.00 0.00 0.00 2.32
3085 3294 4.846779 TTTCCGCTGCTTGAGTTTATTT 57.153 36.364 0.00 0.00 0.00 1.40
3086 3295 4.702131 AGATTTCCGCTGCTTGAGTTTATT 59.298 37.500 0.00 0.00 0.00 1.40
3087 3296 4.265073 AGATTTCCGCTGCTTGAGTTTAT 58.735 39.130 0.00 0.00 0.00 1.40
3088 3297 3.674997 AGATTTCCGCTGCTTGAGTTTA 58.325 40.909 0.00 0.00 0.00 2.01
3089 3298 2.508526 AGATTTCCGCTGCTTGAGTTT 58.491 42.857 0.00 0.00 0.00 2.66
3090 3299 2.191128 AGATTTCCGCTGCTTGAGTT 57.809 45.000 0.00 0.00 0.00 3.01
3091 3300 2.079925 GAAGATTTCCGCTGCTTGAGT 58.920 47.619 0.00 0.00 0.00 3.41
3092 3301 1.061711 CGAAGATTTCCGCTGCTTGAG 59.938 52.381 0.00 0.00 0.00 3.02
3093 3302 1.078709 CGAAGATTTCCGCTGCTTGA 58.921 50.000 0.00 0.00 0.00 3.02
3094 3303 0.798776 ACGAAGATTTCCGCTGCTTG 59.201 50.000 0.00 0.00 0.00 4.01
3095 3304 1.197721 CAACGAAGATTTCCGCTGCTT 59.802 47.619 0.00 0.00 0.00 3.91
3096 3305 0.798776 CAACGAAGATTTCCGCTGCT 59.201 50.000 0.00 0.00 0.00 4.24
3097 3306 0.796312 TCAACGAAGATTTCCGCTGC 59.204 50.000 0.00 0.00 0.00 5.25
3098 3307 4.330074 ACTTATCAACGAAGATTTCCGCTG 59.670 41.667 0.00 0.00 0.00 5.18
3099 3308 4.504858 ACTTATCAACGAAGATTTCCGCT 58.495 39.130 0.00 0.00 0.00 5.52
3100 3309 4.859629 ACTTATCAACGAAGATTTCCGC 57.140 40.909 0.00 0.00 0.00 5.54
3101 3310 6.198591 GTCCTACTTATCAACGAAGATTTCCG 59.801 42.308 0.00 0.00 0.00 4.30
3102 3311 6.479331 GGTCCTACTTATCAACGAAGATTTCC 59.521 42.308 0.00 0.00 0.00 3.13
3103 3312 6.479331 GGGTCCTACTTATCAACGAAGATTTC 59.521 42.308 0.00 0.00 0.00 2.17
3104 3313 6.070424 TGGGTCCTACTTATCAACGAAGATTT 60.070 38.462 0.00 0.00 0.00 2.17
3105 3314 5.424252 TGGGTCCTACTTATCAACGAAGATT 59.576 40.000 0.00 0.00 0.00 2.40
3106 3315 4.960469 TGGGTCCTACTTATCAACGAAGAT 59.040 41.667 0.00 0.00 0.00 2.40
3107 3316 4.346730 TGGGTCCTACTTATCAACGAAGA 58.653 43.478 0.00 0.00 0.00 2.87
3108 3317 4.730949 TGGGTCCTACTTATCAACGAAG 57.269 45.455 0.00 0.00 0.00 3.79
3109 3318 4.682320 GCATGGGTCCTACTTATCAACGAA 60.682 45.833 0.00 0.00 0.00 3.85
3110 3319 3.181469 GCATGGGTCCTACTTATCAACGA 60.181 47.826 0.00 0.00 0.00 3.85
3111 3320 3.131396 GCATGGGTCCTACTTATCAACG 58.869 50.000 0.00 0.00 0.00 4.10
3112 3321 3.118038 TGGCATGGGTCCTACTTATCAAC 60.118 47.826 0.00 0.00 0.00 3.18
3113 3322 3.119319 TGGCATGGGTCCTACTTATCAA 58.881 45.455 0.00 0.00 0.00 2.57
3114 3323 2.770447 TGGCATGGGTCCTACTTATCA 58.230 47.619 0.00 0.00 0.00 2.15
3115 3324 3.584848 AGATGGCATGGGTCCTACTTATC 59.415 47.826 3.81 0.00 0.00 1.75
3116 3325 3.328931 CAGATGGCATGGGTCCTACTTAT 59.671 47.826 3.81 0.00 0.00 1.73
3117 3326 2.705658 CAGATGGCATGGGTCCTACTTA 59.294 50.000 3.81 0.00 0.00 2.24
3118 3327 1.492176 CAGATGGCATGGGTCCTACTT 59.508 52.381 3.81 0.00 0.00 2.24
3119 3328 1.135094 CAGATGGCATGGGTCCTACT 58.865 55.000 3.81 0.00 0.00 2.57
3120 3329 0.536006 GCAGATGGCATGGGTCCTAC 60.536 60.000 3.81 0.00 43.97 3.18
3121 3330 1.839191 GCAGATGGCATGGGTCCTA 59.161 57.895 3.81 0.00 43.97 2.94
3122 3331 2.599597 GCAGATGGCATGGGTCCT 59.400 61.111 3.81 0.00 43.97 3.85
3131 3340 1.211949 TGTAGGGTTAAGGCAGATGGC 59.788 52.381 0.00 0.00 43.74 4.40
3132 3341 2.158755 CCTGTAGGGTTAAGGCAGATGG 60.159 54.545 0.00 0.00 0.00 3.51
3133 3342 3.199880 CCTGTAGGGTTAAGGCAGATG 57.800 52.381 0.00 0.00 0.00 2.90
3145 3354 3.973973 TCCCAATCAGAATACCTGTAGGG 59.026 47.826 2.53 0.00 43.72 3.53
3146 3355 5.630415 TTCCCAATCAGAATACCTGTAGG 57.370 43.478 0.00 0.00 43.38 3.18
3147 3356 5.529060 GCTTTCCCAATCAGAATACCTGTAG 59.471 44.000 0.00 0.00 43.38 2.74
3148 3357 5.437060 GCTTTCCCAATCAGAATACCTGTA 58.563 41.667 0.00 0.00 43.38 2.74
3149 3358 4.273318 GCTTTCCCAATCAGAATACCTGT 58.727 43.478 0.00 0.00 43.38 4.00
3150 3359 3.313526 CGCTTTCCCAATCAGAATACCTG 59.686 47.826 0.00 0.00 44.27 4.00
3151 3360 3.054361 ACGCTTTCCCAATCAGAATACCT 60.054 43.478 0.00 0.00 0.00 3.08
3152 3361 3.279434 ACGCTTTCCCAATCAGAATACC 58.721 45.455 0.00 0.00 0.00 2.73
3153 3362 3.312697 GGACGCTTTCCCAATCAGAATAC 59.687 47.826 0.00 0.00 38.70 1.89
3154 3363 3.541632 GGACGCTTTCCCAATCAGAATA 58.458 45.455 0.00 0.00 38.70 1.75
3155 3364 2.369394 GGACGCTTTCCCAATCAGAAT 58.631 47.619 0.00 0.00 38.70 2.40
3156 3365 1.821216 GGACGCTTTCCCAATCAGAA 58.179 50.000 0.00 0.00 38.70 3.02
3157 3366 3.551259 GGACGCTTTCCCAATCAGA 57.449 52.632 0.00 0.00 38.70 3.27
3165 3374 1.519408 TGCAAACTAGGACGCTTTCC 58.481 50.000 0.00 0.00 46.33 3.13
3166 3375 2.484264 ACATGCAAACTAGGACGCTTTC 59.516 45.455 0.00 0.00 0.00 2.62
3167 3376 2.504367 ACATGCAAACTAGGACGCTTT 58.496 42.857 0.00 0.00 0.00 3.51
3168 3377 2.185004 ACATGCAAACTAGGACGCTT 57.815 45.000 0.00 0.00 0.00 4.68
3169 3378 2.076863 GAACATGCAAACTAGGACGCT 58.923 47.619 0.00 0.00 0.00 5.07
3170 3379 1.201921 CGAACATGCAAACTAGGACGC 60.202 52.381 0.00 0.00 0.00 5.19
3171 3380 2.066262 ACGAACATGCAAACTAGGACG 58.934 47.619 0.00 0.00 0.00 4.79
3172 3381 3.326747 AGACGAACATGCAAACTAGGAC 58.673 45.455 0.00 0.00 0.00 3.85
3173 3382 3.585862 GAGACGAACATGCAAACTAGGA 58.414 45.455 0.00 0.00 0.00 2.94
3174 3383 2.673368 GGAGACGAACATGCAAACTAGG 59.327 50.000 0.00 0.00 0.00 3.02
3175 3384 3.325870 TGGAGACGAACATGCAAACTAG 58.674 45.455 0.00 0.00 0.00 2.57
3176 3385 3.394674 TGGAGACGAACATGCAAACTA 57.605 42.857 0.00 0.00 0.00 2.24
3177 3386 2.254546 TGGAGACGAACATGCAAACT 57.745 45.000 0.00 0.00 0.00 2.66
3178 3387 3.003275 TCTTTGGAGACGAACATGCAAAC 59.997 43.478 0.00 0.00 33.84 2.93
3179 3388 3.210227 TCTTTGGAGACGAACATGCAAA 58.790 40.909 0.00 0.00 35.74 3.68
3180 3389 2.844946 TCTTTGGAGACGAACATGCAA 58.155 42.857 0.00 0.00 0.00 4.08
3181 3390 2.542020 TCTTTGGAGACGAACATGCA 57.458 45.000 0.00 0.00 0.00 3.96
3182 3391 2.808543 AGTTCTTTGGAGACGAACATGC 59.191 45.455 0.00 0.00 39.48 4.06
3183 3392 4.310769 AGAGTTCTTTGGAGACGAACATG 58.689 43.478 0.00 0.00 39.48 3.21
3184 3393 4.608948 AGAGTTCTTTGGAGACGAACAT 57.391 40.909 0.00 0.00 39.48 2.71
3185 3394 4.099573 AGAAGAGTTCTTTGGAGACGAACA 59.900 41.667 0.00 0.00 39.48 3.18
3186 3395 4.623002 AGAAGAGTTCTTTGGAGACGAAC 58.377 43.478 0.00 0.00 36.36 3.95
3187 3396 4.939052 AGAAGAGTTCTTTGGAGACGAA 57.061 40.909 0.00 0.00 36.36 3.85
3196 3405 6.630638 AACAGGAGTTCGAAGAAGAGTTCTTT 60.631 38.462 0.00 0.00 45.90 2.52
3197 3406 5.163395 AACAGGAGTTCGAAGAAGAGTTCTT 60.163 40.000 0.00 1.51 45.90 2.52
3198 3407 3.892588 ACAGGAGTTCGAAGAAGAGTTCT 59.107 43.478 0.00 0.00 45.90 3.01
3199 3408 4.245845 ACAGGAGTTCGAAGAAGAGTTC 57.754 45.455 0.00 0.00 45.90 3.01
3200 3409 4.623002 GAACAGGAGTTCGAAGAAGAGTT 58.377 43.478 0.00 1.29 44.11 3.01
3201 3410 4.245845 GAACAGGAGTTCGAAGAAGAGT 57.754 45.455 0.00 0.00 44.11 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.