>input_sequence_57072
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-----------------------------ATGGCTGCGCCGGCCACCTTCGTCGTGGTGGTCGC---CTTGGTGGCGGCT
GCTCTCTGCGGCGGCGTCTGCCGGGCGCAGGACATGGACAACGAGTGGGCACGGTACCGCGGGTTCTTCGGCGGCGGCGG
CACGCTGCTGCCACAATCGGACGTGGACCTGCTGGAGTTCCCGCTGAACCTCGAGTACCTGGAGGCGGAGTTCTTCTGCT
GGTCGGCGCTGGGCTACGGCCTCGATGGCATCGACGTCAACCTCACCGGCGGCGGCCCGCCTCCTATCGGTGGCCAGACC
GCCGCCCTCACCCCCTTCGTCCGAGACGTCGCCACACAGTTCTGCTACCAAGAAGTTGGCCACCTCAGGTACGTACGCAA
TTAACCTCACAATTCGGCCACTAGCTCGGACTCTCTCCCGACCAAGAAATATTAGTAGCAGAGAAG-----TAGCATGTC
GTTTATGGACAGT----GCGTGTGTATGTGCAGGGCGATCAAGCAGAACGTGAGGGGATTCCCGCGGCCGCAGCTGGACA
TCAGCGCGACCAACATCGGCAAGATCGTGGAGCAGGCGATGAACACGACGCTGGACCCGCCCTTCAACCCCTACGAGAAC
AGCCTCAACTTCCTCATCGCCTCCTACATCATCCCGTACGTCGGTCTTACCGGCTACGTTGGCGCCAACCCCAAGCTCCT
CACTCCTCAGGCCAGAAGGGTACGTACCTAGGCTACACCACACGCGTGATCACCCTACCACCAGCCGTATCGATCAGACA
CACAAAATGCGTGCATGCGTACTGATCGATATTCCCATTAATTACATGTACGTGATA-----ATTAACTTGTCGTACTTC
TATGATTGATTGCACGCAGCTGGTGGCGGGACTGCTGGGCGTGGAATCGGCACAGGACGCGGTGATCCGGGCCCTGTTGT
ACGAGCGCGGACTGTCGCGGGTGGTGAGCTATGGTGTTGGTGTGGCGGAGGTGACCGCGCACATCTCCGACCTGCGGAAC
GAGCTGGGGAGGAGGGGAGTGAAGGACGAGGGGCTAGTGGTGGTGCCGGGTGAGGGGCCCGAGGGGCAGACCGTGGGGAA
CATCATCGCCGGCGACCGCTACTCGCTCGCTTACGATCGCACGCCCGAGGAGATCCTCGGCATCGTGTACGGCACCGGAA
GCCCCGCCCAGGCCGGCGGGTTCTTTCCCCAGGGCGCTGACGGCCGCATAGCCAGGGGGCTCCTCATGTAG---------
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>chr2D_1_TraesCS2D01G288700
GTTTGTCAGCTCGGCCACCAGACTTGGAACATCTAACAGTTGAATCATTGACAC-TTTTGTGCAATGTGACCCAAATGTA
ATCTCGTCACCCTTGTGACATTTTGGTGACACCGTCCAAAACATTGT----------TTTTGAAGTTTGATCTTTAAGGA
CATTTGAGAAAGAATTGACTCAATATGGCTTTGGATCACAAAAATGAAA-GGCTAAGTCCGTTAAGAC----TGACATTA
ATTATCAATCCAATTAGGAGATTGGAG-TGCGCTTTCAGTGGTGAATTCTTCAATTCAACTGACAT--------------
-----------------------------------------------------------GACCTATTAATCATTTACTTT
TCCTATTCTTATGGTTTGAGAAACTAGTAAACCGAATAAGCCCTAAGGGACGAGCACATGTTTCAAAAGTTATACACGTT
GCCTTCTTTTTTTGCGGGGG-------------------------AAAAGTTATACACGTTGCTAACTTAAAAAAGAGGT
A---CATCATGCTAATATTTTCCTTGCAAGCACTGTCCTATAATGCCTTGCAAGCATATGTGAGTGACACC---TGTTTC
TTCG------------TTCTTTCTGAGCGCACATCGCATGTCCCATTTCGTGTATGGGGGAACTTGTCTAATTTGCGCCA
CCATTGTGTGTACCTCAGGAGCCCAGGGTAAGGCCCAAAACTACAA------------AACTCGCAAGACAACTGCACAG
AAAACGTCACACAATGGAGTAATGGTCGACCCACTAAAATTTCCTCCAAGACAAAGCAAACAGCGACCGGCCGCTTAAAC
AACACCACACGTAGTTCCGC---CGGAGGCCAGACCCTTGGCGCGCCACCCCCACTCCTCTT-CCGTTCCCGTCCACGTC
ACGCTCCACGTTGCACCCCTTCCGCATGTGCCGCACCGCCTATATTACATTCGCCGATCGCGAGGACGAGAACACGCACA
AGTTAAGTCCCCCAAACCTGCAGATCAGTGATCCTACCATCCTTGGCGTGCGCAGACTAGTCCCAACTCCCAACTCGTGA
TCATACTACGAGCTGCAAGTAGTATTGCCATGGCTGCGCCGGCCACCTTCGTCGTGGTGGTCGC---CTTGGTGGCGGCT
GCTCTCTGCGGCGGCGTCTGCCGGGCGCAGGACATGGACAACGAGTGGGCACGGTACCGCGGGTTCTTCGGCGGCGGCGG
CACGCTGCTGCCACAATCGGACGTGGACCTGCTGGAGTTCCCGCTGAACCTCGAGTACCTGGAGGCGGAGTTCTTCTGCT
GGTCGGCGCTGGGCTACGGCCTCGATGGCATCGACGTCAACCTCACCGGCGGCGGCCCGCCTCCTATCGGTGGCCAGACC
GCCGCCCTCACCCCCTTCGTCCGAGACGTCGCCACACAGTTCTGCTACCAAGAAGTTGGCCACCTCAGGTACGTACGCAA
TTAACCTCACAATTCGGCCACTAGCTCGGACTCTCTCCCGACCAAGAAATATTAGTAGCAGAGAAG-----TAGCATGTC
GTTTATGGACAGT----GCGTGTGTATGTGCAGGGCGATCAAGCAGAACGTGAGGGGATTCCCGCGGCCGCAGCTGGACA
TCAGCGCGACCAACATCGGCAAGATCGTGGAGCAGGCGATGAACACGACGCTGGACCCGCCCTTCAACCCCTACGAGAAC
AGCCTCAACTTCCTCATCGCCTCCTACATCATCCCGTACGTCGGTCTTACCGGCTACGTTGGCGCCAACCCCAAGCTCCT
CACTCCTCAGGCCAGAAGGGTACGTACCTAGGCTACACCACACGCGTGATCACCCTACCACCAGCCGTATCGATCAGACA
CACAAAATGCGTGCATGCGTACTGATCGATATTCCCATTAATTACATGTACGTGATA-----ATTAACTTGTCGTACTTC
TATGATTGATTGCACGCAGCTGGTGGCGGGACTGCTGGGCGTGGAATCGGCACAGGACGCGGTGATCCGGGCCCTGTTGT
ACGAGCGCGGACTGTCGCGGGTGGTGAGCTATGGTGTTGGTGTGGCGGAGGTGACCGCGCACATCTCCGACCTGCGGAAC
GAGCTGGGGAGGAGGGGAGTGAAGGACGAGGGGCTAGTGGTGGTGCCGGGTGAGGGGCCCGAGGGGCAGACCGTGGGGAA
CATCATCGCCGGCGACCGCTACTCGCTCGCTTACGATCGCACGCCCGAGGAGATCCTCGGCATCGTGTACGGCACCGGAA
GCCCCGCCCAGGCCGGCGGGTTCTTTCCCCAGGGCGCTGACGGCCGCATAGCCAGGGGGCTCCTCATGTAGACGATCAAT
CGACGGACATATATACAACTGGAGTGTTGTTCTCGATCGCAAGTTGTAGACTATATGCATCATACA--------------
--TGTGTGTCTTGTCCTTATGGATGCTAATAATCAATAAAAGGACCTATGCAATAGGCAAAATGTTTTCCCATCAGCGTC
GGTATCTGGCAAGTTCGAGAACCAACCATGGAACCCTAAGCTTCATGTGACAGCGGACGAATTTGGTCTTACCACTGAGA
ATCATTGACTTTGCGGCCTACCTTATGAAGATATTCAGCTGAGGTTTTATAGAGTTGGACGGCTTCGCTCGCTCTCCCCC
A--------------------------CCGTCGTCCTCTCCTCCAGCCTTCCTCCCCTCCGGCTCCCCCCTGCCGCGGCA
TTGTTCGCCGGGCCCTGCCCGTGCGGCGATGGCGGCGACATGCCCTTCTTTCCCCGCTCAAGCGTGGGGGCGCGGGCCCC
CTGCTGGCGGCGGTGGTACTCAGCTGGTGATGGTGCGGCTTGGTGGGGGGTGTTAGAAGGAAGAGAGAGGATTGGTGGAA
TTGTTGATGTATTGCTTGAGCCTCATGGGCATATATATAGGAGTACAAGGTCGTCTTGAAGTACAAGGCAAGGTGGAATA
AATCCTACGCTATCCTATGTTTCCATAATAACAATGATACTCAACAGCAGGGTTCCGCGGGTCGCGGGCTGTGGGGACCC
GACTCATAAGTCGAGATCACCGAATGCACGTGTACAGTGATCCCAGAGATCAATGCTCACTGAACACACAGAAGCTGAAT
AACAAGAGTCTTACATCCATACATACCGTCTTACAAAAATTACGACCATTATAGGCAAGTCTTACATAGATAGAGCCTCA
AGGGCTGAACGTCAAATAAACTCAAGCAGCGGAAATCTTCGTTGATAAGTAGGACCCATGCCATCTGCCTTAACCCTACA
GGTATTCTGATTGGGAAAGCGTCCTAGTTTGCATGTTCGTCTCCAAAGAACTCTTCTTCGAACTCCTGTTCCT
>chr2A_1
GTTTGTCAGCTCGGCCATCAGACTTGGAACATCTAACACTTGAATCATCAACACTTTTTGTACAATATGACCGAAATGTA
ATCTCGCCACCCTTGTGACATTTTGGTGACACCGTCCAAAACACTGTTTCGGTGAGATTTTGAAGTTTGATCTTTAAGGA
CATTTGAGAAAGAATTGACTCAATATGGTTTTGGATCACAAAAATGAAAAGGCTAAGTCCCTTAAGATACGTTGACATTA
ATTATCAATCCAATTAGGAGATTGGGG-TGCACTTTCCATGGTGAATTCTTCGATTCAACTGACAT--------------
-----------------------------------------------------------GACCTATTAATCATTTACTTT
TCCTATTTTTATGGTTTGAAAAACTAGTAAACCAAATAAGCCCTAAGGGACGAATGCATGTTTAAAAAGTTATACACTTT
GCT---TTTTTTCGGGGGAAAAGTTATACACTTTTTTTGCGCAAAAAAAGTTATACACGTTGCTAACTTAAAAAGGAGGT
ATTACATCATGCTAATAGTTTCCTTTCAAGCACTGTCCTATAATGCCTTGCAAGCATATGTGA-------C---TGTTTC
TTCGCCCTTCCTACCTTTCTTTCTGAGCGCACATCGCATGCCCCATTTCGTGTAT--GGGAACTTGTCTAATTTGCGCCA
CCATTGTGTGTGCTTCAGGAGCCCATGGTAAGGTCCAAAACTAGAA------------AACT------------GCACAG
AAAACGTCACACAATGGAGTAATGGTCGACCCACTCAAATTTCCTCCAAGACAAAGGAAACAGCGACCTGCCGTTTAAAC
AACGCCACAC---GTAGCTCCCGCGGAAGCCACACCCTTGGCGCGCCACCCCCACTCCTCTTCCCGTTCCCGTCCACGTC
ACGCTCCACGTTGCACCCCTTCCGCATGTGCCGCACCGCCTATATTACATTCGCCGATCGCGAGGACGAGAACACGCACA
AGTCAAGTCCCCCAAACCTGCAGATCAGTGATCCTACCATCATCCTTGGCGTTCA---------AACTCCCAACTCGTGA
TCATACTACGAGCTGCAAGTAGTATTGCCATGGCTGCGCCGGCCACCTTCGTCGTGGTGGTCGC---CTTGGTGGCGGCT
GCTCTCTGCGGCGGCGTCTGCCGGGCGCAGGACATGGACAACGAGTGGGCACGGTACCGCGGGTTCTTCGGCGGCGGCGG
CACGCTGCTGCCACAATCGGACGTGGACCTGCTGGAGTTCCCGCTGAACCTCGAGTACCTGGAGGCGGAGTTCTTCTGCT
GGTCGGCGCTGGGCTACGGCCTCGATGGCATCGACGTCAACCTCACCGGCGGCGGCCCGCATCCCATCGGTGGCCAGACC
GCCGCCCTCACCCCCTTCGTCCGAGACGTCGCCACACAGTTCTGCTACCAAGAAGTTGGCCACCTCAGGTACGTACGCAA
TTAACCTCACAATTCGGCCACTT----GGACTCTCTCCCGACCAAGAAATATTAGTAGCAGAGTAGCATACTAGCATGTC
GTTTATGAACAGTACGTGCGTGTGTTTGTGCAGGGCGATCAAGCAGAACGTGAGGGGATTCCCGCGGCCGCAGCTGGACA
TCAGCGCGACCAACATCGGCAAGATCGTGGAGCAGGCGATGAACACGACGCTGGACCCGCCCTTCAACCCCTACGAGAAC
AGCCTCAACTTCCTCATCGCCTCCTACATCATCCCGTACGTCGGCCTGACCGGCTACGTCGGCGCCAACCCCAAGCTCCT
CACTCCCCAGGCCAGAAGGGTACGTACCTAGGCTACACCACACGCGTGATCACCCTACCACCAGCCGTATCGATCAGACA
CACAAAATGCGTGCATGCGTACTGATCGATATTCCCATTAATTACATGTACGTGATACTCTAATTAACTTGTCGTACTTC
TGTGATTGATTGCACGCAGCTGGTGGCGGGACTGCTGGGCGTGGAATCCGCACAGGACGCGGTGATCCGGGCCCTGCTGT
ACGAGCGCGGACTGTCGCGGGTGGCGAGCTATGGTGTTGGTGTGGCGGAGGTGACCGCGCACATCTCCGAGCTGCGGAAC
GAGCTTGGGAGGAGGGGGGTGAAGGACGAGGGGCTAGTGGTGGCGCCGGGTGAGGGGCCCGAGGGGCAGACCGTGGGGAA
CATCATCGCCGGCGACCGCTACTCGCTCGCTTACGATCGCACGCCCGAGGAGATCCTCGGCATCGTGTACGGCACCGGAA
GCCCCGCCCAGGCCGGCGGCTTCTTTCCCCAGGGCGCTGACGGCCGCATAGCCAGGGGGCTCCTCATGTAGACGATCAAT
CGACGGACATATATACAACTGGAGTGTTGTTCTCGATCGCAAGTTGTAGACTATATGCATCATACATGTGTGTGTGTGTG
TGTGTGTGTCTTGTCCTTATGGATGCTAATAATCAATAAAAGGACCTATGCAATAGGCAAAATGTTTTCCCATCAGCGTC
GGCATCTGGCAAGTTCGAGAACCAACCATGGAACCCTAAGCTTCATGTGACAGCGGACGAATTTGGTCTTACCACTGAGA
ACCATTGACTTTGAGGCCTACATTATGAAGATATTCAGCTGAGGTTTTATAGAGTTGGACGGCTTCGCTCGCTCGGCCCC
TGCCGCCGCCGCGCCCTCCTGCCGCTGCCGCCGTCCTCTCCTCCAGCCTTCCTCCCCCGCCGCTCCCTCCTGCCGCCGTT
GTCGGCATGGTCCGC----------GCGATGGCGGCGACGGGCCCTTCTTTCCACGCTCGT--GTGGGGGCACGGG----
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>chr2B_166
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----------------GACTCAATATGGTTTCGGATCACAAAAATGAAAAGGCTAAGTCCCTTAAGATACGTTGACATTA
ATTATCAATCCAATTAGGAGATTGGGGGTGCACTTTCAGTGGTGAATTCTTCAATTCAACTGACATGACCTATATGGCCG
TATGCATCTTTCTGGTGCAGAGGCCGGGGAATCTCCCCTTTTCCAAAAAAAACTGACATGACCTATTAATCATTTACTTT
TCCTATTCTTATGGTTTGAGAAAATAGTAAACCGAATAAGCCCTAAGGGAAGAACCCATGTTTCAAAAGTTATACACGTT
ACT---TTTTTTTGTGGGGG-------------------------AAAAGTTATACACGTTGCTAACTTAAAAAAGAGGT
A---CATCATGCTAATATTTTCCTTGCAAGCACTGTCCTATAGTGACTTGCAAGCATATGTGA-------CACCTGTTTC
TTCACCCTTCCTGCCTTTCTTTCAGAGCGCACATCGCATGTCCCATTTCGTGTAT--GG-AACTTGTCTAATTTGCGCCA
CCATTATGTGTAGTTCAGGAGCCCGGG-----------------------------------------------------
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>chr2B_602
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--------------TCAGGAGCCCAGGGTAAGGTCCAAAGCTAGAAAACTCGCAAGACAACT------------GCACAG
AAAACGTCACACAATGGAGTTATGGTCGACCCACTCAAATTTCCTCCAAGACAAAGGAAACAGCGACCGGCCGTTTAAGC
AACGCCACACGTAGTAGCTCCCGCGGACGCCACACCCTTGGCGCGCCACCCCCGCTCCTCTTCCCGTTCCCGTCCACGTC
ATGCTCCACGTTGCACCCCTTCCGCATGTGCCGCACCGCCTATATTACATTCGCTGATCGCGAGGACGAGAACACGCAGA
AGTCAAGTCCCCCAAACCTGCAGATCAGTGATCCTACCATCCTTGGCGTGCGCAGACTAGTCCCAACTCCCAACTCGTGA
TCATACTACGAGCTGCAAGTAGTATTGCCATGGCTGCGCCGGCCACCTTCGTCGTGGTGGTCGCCTGCTTGGTGGCGTCT
GCTCTCTGCGGCGGCGTCTGCCGGGCGCAGGACATGGACAACGAGTGGGCACGGTACCGCGGGTTCTTCGGCGGCGGCGG
CACGCTGCTGCCACAATCGGACGTGGACCTGCTGGAGTTCCCGCTGAACCTCGAGTACCTGGAGGCGGAGTTCTTCTGCT
GGTCGGCGCTGGGCTACGGCCTCGATGGCATCGACGTCAACCTCACCGGCGGCGGTCCGCCTCCCATCGGTGGCCAGACC
GCCGCCCTCACCCCCTTCGTCCGAGACGTCGCCACACAGTTCTGCTACCAAGAAGTTGGCCACCTCAGGTACGTACGCAA
TTAACCTCACAATTCGGCCACT----CGGACTCTCTCCCGACCAAGAAATATTAGTAGCAGAGAAG-----TAGCATGTC
GTTTATGAACAGTGCGTGCGTGTGTATGTGCAGGGCGATCAAGCAGAACGTGAGGGGATTCCCGCGGCCGCAGCTGGACA
TCAGCGCGACCAACATCGGCAAGATCGTGGAGCAGGCGATGAACACGACGCTGGACCCGCCCTTCAACCCCTACGAGAAC
AGCCTCAACTTCCTCATCGCCTCCTACATCATCCCGTACGTCGGTCTTACCGGCTACGTTGGCGCCAACCCCAAGCTCCT
CACTCCTCAGGCCAGAAGGGTACGTACCTAGGCTACACCACACGCGTGATCACCCTACCACCAGCCGTATCGATCAGACA
CACAAAATGCGTGCATGCGTACTGATCGATATTCCCATTAATTACATGTACGTGA-----TAATTAACTTGTCGTACTTC
TGTGATTGATTGCACGCAGCTGGTGGCGGGACTGCTGGGCGTGGAATCGGCACAGGACGCGGTGATCCGGGCCCTGTTGT
ACGAGCGCGGACTGTCGCGGGTGGCGAGCTATGGTGTTGGTGTGGCGGAGGTGACCGCGCACATCTCCGACCTGCGGAAC
GAGCTTGGGAGGAGGGGAGTGAAGGGCGAGGGGCTAGTGGTGGCGCCGGGTGAGGGGCCCGAGGGGCAGACCGTGGGGAA
CATCATCGCCGGCGACCGCTACTCGCTCGCGTACGATCGCACGCCCGAGGAGATCCTCGGCATCGTGTACGGCACCGGAA
GCCCCGCCCAGGCCGGCGGGTTCTTTCCCCAGGGCGCTGACGGCCGCATAGCCAGGGGACTCCTCATGTAGATGATCAAT
CGACGGACATATATACAACTGGAGTGTTGTTCTCGATCGCAAGTTGTAGACTATATGCATCATACATGTGTGTG------
----------TTGTCCTTATGGATGCTAATAATCAATAAAAGGACCTATGCAATAGGCAAAATGTTTTCCCATCAGCGTC
GGCATCTGGCAAGTTCGAGAACCAACCATGGAACCCCAAGCTTCA-----------------------------------
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>SNPs
-----------------S--------------------S---------SS-----------S----S-----S-------
------S------------------------------------S------------------------------------
----------------------------S-------------------------------S------S------------
-------------------------S-----S------------------------------------------------
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-----------------------------------------------------S-S------------------------
--SSSS--------S-----------------------------------------------------------------
---------------------------------------------------------------SSSSSSS----------
-------------------------------------------------------SS-----------------------
-------------S-------------------S---------S------------------SSSSSSSSSSSS------
-----------------------------------S--------------------S----------------S------
---S-----------SS-S--------S----S-----------------------------------------------
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---S----------------------------------------------------------------------------
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----------------------------------------------------------------S---------------
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----------------------SSSS------------------------------------------------------
-------S------------------------------------------------------------------------
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-S------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-----S-------------------------------------S------------------------------------
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--S-----------------------------------------------------------------------------
-S-----------S-------S----------------------------------------------------SS----
S-----------------------------S--------------------------SS-S------S--------S-SS
S-SSS-SSS-SS-S-SSSSSSSSSS--------------SS------------S-----SSSS--------S----SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_899
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AACACCACACGTAGTTCCG-------------------------------------------------------------
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>reverse_2897
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----------------TACTCAGCTGGTGATGGTGC--------------------------------------------
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