Multiple sequence alignment - TraesCS2D01G275900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G275900 chr2D 100.000 2660 0 0 1 2660 345520552 345517893 0.000000e+00 4913.0
1 TraesCS2D01G275900 chr2D 84.071 339 48 5 2 340 525973793 525973461 3.300000e-84 322.0
2 TraesCS2D01G275900 chr2D 90.909 99 8 1 385 482 618290543 618290641 5.970000e-27 132.0
3 TraesCS2D01G275900 chr2A 92.000 2125 104 29 1 2089 458669084 458671178 0.000000e+00 2922.0
4 TraesCS2D01G275900 chr2A 84.412 340 48 4 2 340 775599337 775599002 1.970000e-86 329.0
5 TraesCS2D01G275900 chr2B 90.055 1830 107 28 236 2024 411002317 411000522 0.000000e+00 2302.0
6 TraesCS2D01G275900 chr2B 86.598 97 12 1 385 480 754935870 754935966 3.620000e-19 106.0
7 TraesCS2D01G275900 chr7D 90.947 486 40 4 2177 2660 99421288 99420805 0.000000e+00 651.0
8 TraesCS2D01G275900 chr6D 88.485 495 54 3 2168 2660 438100097 438099604 1.760000e-166 595.0
9 TraesCS2D01G275900 chr4B 88.641 493 51 5 2170 2660 570239512 570239023 1.760000e-166 595.0
10 TraesCS2D01G275900 chr4B 84.929 491 69 5 2167 2655 623658563 623658076 2.380000e-135 492.0
11 TraesCS2D01G275900 chr4B 76.087 184 24 9 437 607 7779673 7779849 7.890000e-11 78.7
12 TraesCS2D01G275900 chr4B 90.741 54 5 0 1036 1089 529676785 529676838 3.670000e-09 73.1
13 TraesCS2D01G275900 chr1B 87.018 493 60 4 2170 2660 604625413 604625903 1.080000e-153 553.0
14 TraesCS2D01G275900 chr1B 85.336 491 56 11 2174 2660 642487289 642486811 6.610000e-136 494.0
15 TraesCS2D01G275900 chr1B 80.179 560 90 13 3 548 668703323 668702771 1.480000e-107 399.0
16 TraesCS2D01G275900 chr1B 77.174 184 22 9 437 607 666904750 666904574 3.650000e-14 89.8
17 TraesCS2D01G275900 chr5A 86.875 480 50 6 2170 2647 690020843 690020375 2.350000e-145 525.0
18 TraesCS2D01G275900 chr4A 86.179 492 61 7 2174 2660 626544050 626544539 2.350000e-145 525.0
19 TraesCS2D01G275900 chr4A 88.889 54 6 0 1036 1089 32653603 32653656 1.710000e-07 67.6
20 TraesCS2D01G275900 chr3D 84.848 495 69 5 2168 2660 92738617 92738127 6.610000e-136 494.0
21 TraesCS2D01G275900 chr3D 85.174 344 38 10 2 340 9439781 9440116 9.120000e-90 340.0
22 TraesCS2D01G275900 chr3D 84.503 342 47 5 2 342 502965932 502965596 1.530000e-87 333.0
23 TraesCS2D01G275900 chr6B 82.051 546 77 10 18 548 92748806 92748267 1.880000e-121 446.0
24 TraesCS2D01G275900 chr6B 77.174 184 22 9 437 607 238141849 238142025 3.650000e-14 89.8
25 TraesCS2D01G275900 chr3B 77.958 617 109 15 2 602 798105495 798106100 7.000000e-96 361.0
26 TraesCS2D01G275900 chr5B 85.088 342 45 5 2 342 400422891 400422555 7.050000e-91 344.0
27 TraesCS2D01G275900 chr5B 82.196 337 54 3 5 340 91083128 91082797 4.330000e-73 285.0
28 TraesCS2D01G275900 chr5B 77.404 208 30 9 358 548 455301758 455301551 1.010000e-19 108.0
29 TraesCS2D01G275900 chr4D 87.097 62 8 0 1028 1089 431232077 431232138 1.320000e-08 71.3
30 TraesCS2D01G275900 chrUn 88.462 52 3 2 358 409 30554766 30554814 2.860000e-05 60.2
31 TraesCS2D01G275900 chrUn 88.462 52 3 2 358 409 30579133 30579181 2.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G275900 chr2D 345517893 345520552 2659 True 4913 4913 100.000 1 2660 1 chr2D.!!$R1 2659
1 TraesCS2D01G275900 chr2A 458669084 458671178 2094 False 2922 2922 92.000 1 2089 1 chr2A.!!$F1 2088
2 TraesCS2D01G275900 chr2B 411000522 411002317 1795 True 2302 2302 90.055 236 2024 1 chr2B.!!$R1 1788
3 TraesCS2D01G275900 chr1B 668702771 668703323 552 True 399 399 80.179 3 548 1 chr1B.!!$R3 545
4 TraesCS2D01G275900 chr6B 92748267 92748806 539 True 446 446 82.051 18 548 1 chr6B.!!$R1 530
5 TraesCS2D01G275900 chr3B 798105495 798106100 605 False 361 361 77.958 2 602 1 chr3B.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 656 0.176219 CGGTTATGTGGGTCGGCTTA 59.824 55.0 0.0 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2266 0.028902 GGAATTATGCGGGTTCGTGC 59.971 55.0 0.0 0.0 38.89 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
484 500 1.068748 CAGCTCTGTGTTCCATGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
548 565 3.951680 AGCCCGATTTTCCGTCAATTAAT 59.048 39.130 0.00 0.00 0.00 1.40
575 592 9.004717 GGAGTAATTTTAGCTCTTTTCTTGACT 57.995 33.333 0.00 0.00 0.00 3.41
637 656 0.176219 CGGTTATGTGGGTCGGCTTA 59.824 55.000 0.00 0.00 0.00 3.09
729 749 3.179265 CGTGCACGGCTCGTTAGG 61.179 66.667 31.15 0.00 38.32 2.69
731 751 4.752879 TGCACGGCTCGTTAGGGC 62.753 66.667 0.00 0.17 45.02 5.19
795 820 1.186200 GGAACCAAGAAGGGAATGGC 58.814 55.000 0.00 0.00 43.89 4.40
1092 1120 1.597461 GACCCTGTACCTGGAGCAC 59.403 63.158 0.00 0.00 0.00 4.40
1137 1165 3.118454 ACGCTGCCATACGTGCAC 61.118 61.111 6.82 6.82 41.76 4.57
1191 1219 3.523295 GGAATACTCCGACGACGAC 57.477 57.895 9.28 0.00 42.66 4.34
1200 1228 2.783935 GACGACGACGAGGAGGAC 59.216 66.667 15.32 0.00 42.66 3.85
1221 1249 3.060000 ATGGTCTCCGACGCGTCA 61.060 61.111 35.71 18.75 32.65 4.35
1308 1336 2.049156 CCTTCACAGCAGCGTCGA 60.049 61.111 0.00 0.00 0.00 4.20
1468 1496 1.296715 GTCCAACGGCAGGATGAGT 59.703 57.895 0.00 0.00 39.69 3.41
1495 1523 2.158959 CGTCGCCATCGTGTCTTCC 61.159 63.158 0.00 0.00 36.96 3.46
1540 1571 2.103538 GCTCGTCCGGCGTCATTA 59.896 61.111 16.00 0.00 42.13 1.90
1664 1700 2.749076 TGCTGCACCATAACTGATGAAC 59.251 45.455 0.00 0.00 37.82 3.18
1721 1772 1.202580 GGCAACCAGATCGCTCATAGT 60.203 52.381 0.00 0.00 0.00 2.12
1734 1785 2.757868 GCTCATAGTCTCACAGGTCACT 59.242 50.000 0.00 0.00 0.00 3.41
1820 1878 5.506686 TGATCGATCTTCTTGTACTCCTG 57.493 43.478 25.02 0.00 0.00 3.86
1849 1907 6.508777 TCATTACCAGGTTTTGCTTGTTTAC 58.491 36.000 0.00 0.00 0.00 2.01
1878 1936 4.393062 CGTGTCTTCTTGTGCTTCCAATAT 59.607 41.667 0.00 0.00 0.00 1.28
1879 1937 5.634896 GTGTCTTCTTGTGCTTCCAATATG 58.365 41.667 0.00 0.00 0.00 1.78
1880 1938 5.412594 GTGTCTTCTTGTGCTTCCAATATGA 59.587 40.000 0.00 0.00 0.00 2.15
1881 1939 5.412594 TGTCTTCTTGTGCTTCCAATATGAC 59.587 40.000 0.00 0.00 31.71 3.06
1882 1940 5.645497 GTCTTCTTGTGCTTCCAATATGACT 59.355 40.000 0.00 0.00 30.04 3.41
1883 1941 6.150140 GTCTTCTTGTGCTTCCAATATGACTT 59.850 38.462 0.00 0.00 30.04 3.01
1884 1942 5.885230 TCTTGTGCTTCCAATATGACTTG 57.115 39.130 0.00 0.00 0.00 3.16
1885 1943 5.559770 TCTTGTGCTTCCAATATGACTTGA 58.440 37.500 0.00 0.00 0.00 3.02
1886 1944 6.182627 TCTTGTGCTTCCAATATGACTTGAT 58.817 36.000 0.00 0.00 0.00 2.57
1887 1945 5.823209 TGTGCTTCCAATATGACTTGATG 57.177 39.130 0.00 0.00 0.00 3.07
1888 1946 4.096833 TGTGCTTCCAATATGACTTGATGC 59.903 41.667 0.00 0.00 0.00 3.91
1889 1947 3.633525 TGCTTCCAATATGACTTGATGCC 59.366 43.478 0.00 0.00 0.00 4.40
1890 1948 3.633525 GCTTCCAATATGACTTGATGCCA 59.366 43.478 0.00 0.00 0.00 4.92
1891 1949 4.498682 GCTTCCAATATGACTTGATGCCAC 60.499 45.833 0.00 0.00 0.00 5.01
1892 1950 3.554934 TCCAATATGACTTGATGCCACC 58.445 45.455 0.00 0.00 0.00 4.61
1893 1951 3.053768 TCCAATATGACTTGATGCCACCA 60.054 43.478 0.00 0.00 0.00 4.17
1894 1952 3.067180 CCAATATGACTTGATGCCACCAC 59.933 47.826 0.00 0.00 0.00 4.16
1895 1953 3.650281 ATATGACTTGATGCCACCACA 57.350 42.857 0.00 0.00 0.00 4.17
1896 1954 1.830279 ATGACTTGATGCCACCACAG 58.170 50.000 0.00 0.00 0.00 3.66
2003 2070 8.860088 AGTGTAATGGTTATGAAAAGCTTTTCT 58.140 29.630 38.15 28.77 45.14 2.52
2004 2071 9.129209 GTGTAATGGTTATGAAAAGCTTTTCTC 57.871 33.333 38.15 27.54 45.14 2.87
2005 2072 8.020819 TGTAATGGTTATGAAAAGCTTTTCTCG 58.979 33.333 38.15 0.00 45.14 4.04
2007 2074 6.385649 TGGTTATGAAAAGCTTTTCTCGTT 57.614 33.333 38.15 26.36 45.14 3.85
2050 2117 1.059692 GTCAGCATCGTCGACAATGTG 59.940 52.381 17.34 13.60 0.00 3.21
2051 2118 1.067915 TCAGCATCGTCGACAATGTGA 60.068 47.619 17.34 15.39 0.00 3.58
2089 2156 3.378427 AGCCAGAAAACGCCAATATCTTC 59.622 43.478 0.00 0.00 0.00 2.87
2090 2157 3.378427 GCCAGAAAACGCCAATATCTTCT 59.622 43.478 0.00 0.00 0.00 2.85
2091 2158 4.142381 GCCAGAAAACGCCAATATCTTCTT 60.142 41.667 0.00 0.00 0.00 2.52
2092 2159 5.622233 GCCAGAAAACGCCAATATCTTCTTT 60.622 40.000 0.00 0.00 0.00 2.52
2093 2160 6.389906 CCAGAAAACGCCAATATCTTCTTTT 58.610 36.000 0.00 0.00 0.00 2.27
2094 2161 6.868339 CCAGAAAACGCCAATATCTTCTTTTT 59.132 34.615 0.00 0.00 0.00 1.94
2118 2185 9.921637 TTTTATTTCAAGAAAACGCCAATATCT 57.078 25.926 0.00 0.00 33.56 1.98
2119 2186 9.921637 TTTATTTCAAGAAAACGCCAATATCTT 57.078 25.926 0.00 0.00 33.56 2.40
2122 2189 9.736023 ATTTCAAGAAAACGCCAATATCTTATC 57.264 29.630 0.00 0.00 33.56 1.75
2123 2190 8.506168 TTCAAGAAAACGCCAATATCTTATCT 57.494 30.769 0.00 0.00 0.00 1.98
2124 2191 8.506168 TCAAGAAAACGCCAATATCTTATCTT 57.494 30.769 0.00 0.00 0.00 2.40
2125 2192 8.397906 TCAAGAAAACGCCAATATCTTATCTTG 58.602 33.333 0.00 0.00 40.65 3.02
2126 2193 8.397906 CAAGAAAACGCCAATATCTTATCTTGA 58.602 33.333 0.00 0.00 41.38 3.02
2127 2194 8.506168 AGAAAACGCCAATATCTTATCTTGAA 57.494 30.769 0.00 0.00 0.00 2.69
2128 2195 8.398665 AGAAAACGCCAATATCTTATCTTGAAC 58.601 33.333 0.00 0.00 0.00 3.18
2129 2196 6.619801 AACGCCAATATCTTATCTTGAACC 57.380 37.500 0.00 0.00 0.00 3.62
2130 2197 5.063880 ACGCCAATATCTTATCTTGAACCC 58.936 41.667 0.00 0.00 0.00 4.11
2131 2198 5.063204 CGCCAATATCTTATCTTGAACCCA 58.937 41.667 0.00 0.00 0.00 4.51
2132 2199 5.707298 CGCCAATATCTTATCTTGAACCCAT 59.293 40.000 0.00 0.00 0.00 4.00
2133 2200 6.128172 CGCCAATATCTTATCTTGAACCCATC 60.128 42.308 0.00 0.00 0.00 3.51
2134 2201 6.151817 GCCAATATCTTATCTTGAACCCATCC 59.848 42.308 0.00 0.00 0.00 3.51
2135 2202 6.660949 CCAATATCTTATCTTGAACCCATCCC 59.339 42.308 0.00 0.00 0.00 3.85
2136 2203 3.838244 TCTTATCTTGAACCCATCCCG 57.162 47.619 0.00 0.00 0.00 5.14
2137 2204 2.158813 TCTTATCTTGAACCCATCCCGC 60.159 50.000 0.00 0.00 0.00 6.13
2138 2205 0.472471 TATCTTGAACCCATCCCGCC 59.528 55.000 0.00 0.00 0.00 6.13
2139 2206 1.281925 ATCTTGAACCCATCCCGCCT 61.282 55.000 0.00 0.00 0.00 5.52
2140 2207 1.452108 CTTGAACCCATCCCGCCTC 60.452 63.158 0.00 0.00 0.00 4.70
2141 2208 1.915078 CTTGAACCCATCCCGCCTCT 61.915 60.000 0.00 0.00 0.00 3.69
2142 2209 0.619255 TTGAACCCATCCCGCCTCTA 60.619 55.000 0.00 0.00 0.00 2.43
2143 2210 1.335132 TGAACCCATCCCGCCTCTAC 61.335 60.000 0.00 0.00 0.00 2.59
2144 2211 1.003051 AACCCATCCCGCCTCTACT 59.997 57.895 0.00 0.00 0.00 2.57
2145 2212 0.263765 AACCCATCCCGCCTCTACTA 59.736 55.000 0.00 0.00 0.00 1.82
2146 2213 0.469518 ACCCATCCCGCCTCTACTAC 60.470 60.000 0.00 0.00 0.00 2.73
2147 2214 0.178958 CCCATCCCGCCTCTACTACT 60.179 60.000 0.00 0.00 0.00 2.57
2148 2215 1.075050 CCCATCCCGCCTCTACTACTA 59.925 57.143 0.00 0.00 0.00 1.82
2149 2216 2.161030 CCATCCCGCCTCTACTACTAC 58.839 57.143 0.00 0.00 0.00 2.73
2150 2217 2.161030 CATCCCGCCTCTACTACTACC 58.839 57.143 0.00 0.00 0.00 3.18
2151 2218 1.516110 TCCCGCCTCTACTACTACCT 58.484 55.000 0.00 0.00 0.00 3.08
2152 2219 1.849039 TCCCGCCTCTACTACTACCTT 59.151 52.381 0.00 0.00 0.00 3.50
2153 2220 3.048600 TCCCGCCTCTACTACTACCTTA 58.951 50.000 0.00 0.00 0.00 2.69
2154 2221 3.654806 TCCCGCCTCTACTACTACCTTAT 59.345 47.826 0.00 0.00 0.00 1.73
2155 2222 4.846367 TCCCGCCTCTACTACTACCTTATA 59.154 45.833 0.00 0.00 0.00 0.98
2156 2223 5.046014 TCCCGCCTCTACTACTACCTTATAG 60.046 48.000 0.00 0.00 0.00 1.31
2157 2224 5.280419 CCCGCCTCTACTACTACCTTATAGT 60.280 48.000 0.00 0.00 35.76 2.12
2158 2225 5.874261 CCGCCTCTACTACTACCTTATAGTC 59.126 48.000 0.00 0.00 33.65 2.59
2159 2226 6.295802 CCGCCTCTACTACTACCTTATAGTCT 60.296 46.154 0.00 0.00 33.65 3.24
2160 2227 6.813152 CGCCTCTACTACTACCTTATAGTCTC 59.187 46.154 0.00 0.00 33.65 3.36
2161 2228 7.105588 GCCTCTACTACTACCTTATAGTCTCC 58.894 46.154 0.00 0.00 33.65 3.71
2162 2229 7.256619 GCCTCTACTACTACCTTATAGTCTCCA 60.257 44.444 0.00 0.00 33.65 3.86
2163 2230 8.316214 CCTCTACTACTACCTTATAGTCTCCAG 58.684 44.444 0.00 0.00 33.65 3.86
2164 2231 8.795899 TCTACTACTACCTTATAGTCTCCAGT 57.204 38.462 0.00 0.00 33.65 4.00
2165 2232 8.869109 TCTACTACTACCTTATAGTCTCCAGTC 58.131 40.741 0.00 0.00 33.65 3.51
2166 2233 6.523840 ACTACTACCTTATAGTCTCCAGTCG 58.476 44.000 0.00 0.00 0.00 4.18
2167 2234 4.136051 ACTACCTTATAGTCTCCAGTCGC 58.864 47.826 0.00 0.00 0.00 5.19
2168 2235 2.308690 ACCTTATAGTCTCCAGTCGCC 58.691 52.381 0.00 0.00 0.00 5.54
2169 2236 2.091775 ACCTTATAGTCTCCAGTCGCCT 60.092 50.000 0.00 0.00 0.00 5.52
2170 2237 3.137913 ACCTTATAGTCTCCAGTCGCCTA 59.862 47.826 0.00 0.00 0.00 3.93
2171 2238 4.142790 CCTTATAGTCTCCAGTCGCCTAA 58.857 47.826 0.00 0.00 0.00 2.69
2172 2239 4.583489 CCTTATAGTCTCCAGTCGCCTAAA 59.417 45.833 0.00 0.00 0.00 1.85
2173 2240 5.068723 CCTTATAGTCTCCAGTCGCCTAAAA 59.931 44.000 0.00 0.00 0.00 1.52
2174 2241 4.657436 ATAGTCTCCAGTCGCCTAAAAG 57.343 45.455 0.00 0.00 0.00 2.27
2175 2242 1.066787 AGTCTCCAGTCGCCTAAAAGC 60.067 52.381 0.00 0.00 0.00 3.51
2176 2243 0.973632 TCTCCAGTCGCCTAAAAGCA 59.026 50.000 0.00 0.00 0.00 3.91
2177 2244 1.346395 TCTCCAGTCGCCTAAAAGCAA 59.654 47.619 0.00 0.00 0.00 3.91
2178 2245 1.464997 CTCCAGTCGCCTAAAAGCAAC 59.535 52.381 0.00 0.00 0.00 4.17
2179 2246 1.071699 TCCAGTCGCCTAAAAGCAACT 59.928 47.619 0.00 0.00 0.00 3.16
2180 2247 1.464997 CCAGTCGCCTAAAAGCAACTC 59.535 52.381 0.00 0.00 0.00 3.01
2181 2248 2.417719 CAGTCGCCTAAAAGCAACTCT 58.582 47.619 0.00 0.00 0.00 3.24
2182 2249 3.585862 CAGTCGCCTAAAAGCAACTCTA 58.414 45.455 0.00 0.00 0.00 2.43
2183 2250 4.184629 CAGTCGCCTAAAAGCAACTCTAT 58.815 43.478 0.00 0.00 0.00 1.98
2184 2251 4.268884 CAGTCGCCTAAAAGCAACTCTATC 59.731 45.833 0.00 0.00 0.00 2.08
2185 2252 4.081642 AGTCGCCTAAAAGCAACTCTATCA 60.082 41.667 0.00 0.00 0.00 2.15
2186 2253 4.268884 GTCGCCTAAAAGCAACTCTATCAG 59.731 45.833 0.00 0.00 0.00 2.90
2187 2254 4.159693 TCGCCTAAAAGCAACTCTATCAGA 59.840 41.667 0.00 0.00 0.00 3.27
2188 2255 4.268884 CGCCTAAAAGCAACTCTATCAGAC 59.731 45.833 0.00 0.00 0.00 3.51
2189 2256 4.572795 GCCTAAAAGCAACTCTATCAGACC 59.427 45.833 0.00 0.00 0.00 3.85
2190 2257 5.119694 CCTAAAAGCAACTCTATCAGACCC 58.880 45.833 0.00 0.00 0.00 4.46
2191 2258 3.636153 AAAGCAACTCTATCAGACCCC 57.364 47.619 0.00 0.00 0.00 4.95
2192 2259 1.115467 AGCAACTCTATCAGACCCCG 58.885 55.000 0.00 0.00 0.00 5.73
2193 2260 0.530870 GCAACTCTATCAGACCCCGC 60.531 60.000 0.00 0.00 0.00 6.13
2194 2261 0.824109 CAACTCTATCAGACCCCGCA 59.176 55.000 0.00 0.00 0.00 5.69
2195 2262 1.414181 CAACTCTATCAGACCCCGCAT 59.586 52.381 0.00 0.00 0.00 4.73
2196 2263 2.628178 CAACTCTATCAGACCCCGCATA 59.372 50.000 0.00 0.00 0.00 3.14
2197 2264 2.958818 ACTCTATCAGACCCCGCATAA 58.041 47.619 0.00 0.00 0.00 1.90
2198 2265 2.628657 ACTCTATCAGACCCCGCATAAC 59.371 50.000 0.00 0.00 0.00 1.89
2199 2266 1.611977 TCTATCAGACCCCGCATAACG 59.388 52.381 0.00 0.00 43.15 3.18
2200 2267 0.032952 TATCAGACCCCGCATAACGC 59.967 55.000 0.00 0.00 41.76 4.84
2201 2268 1.966901 ATCAGACCCCGCATAACGCA 61.967 55.000 0.00 0.00 42.60 5.24
2202 2269 2.125269 AGACCCCGCATAACGCAC 60.125 61.111 0.00 0.00 42.60 5.34
2203 2270 3.560278 GACCCCGCATAACGCACG 61.560 66.667 0.00 0.00 42.60 5.34
2204 2271 3.993376 GACCCCGCATAACGCACGA 62.993 63.158 0.00 0.00 42.60 4.35
2205 2272 2.816083 CCCCGCATAACGCACGAA 60.816 61.111 0.00 0.00 42.60 3.85
2206 2273 2.398036 CCCGCATAACGCACGAAC 59.602 61.111 0.00 0.00 42.60 3.95
2207 2274 2.398036 CCGCATAACGCACGAACC 59.602 61.111 0.00 0.00 42.60 3.62
2208 2275 2.398036 CGCATAACGCACGAACCC 59.602 61.111 0.00 0.00 42.60 4.11
2209 2276 2.398036 GCATAACGCACGAACCCG 59.602 61.111 0.00 0.00 41.79 5.28
2210 2277 2.398036 CATAACGCACGAACCCGC 59.602 61.111 0.00 0.00 39.95 6.13
2211 2278 2.048033 ATAACGCACGAACCCGCA 60.048 55.556 0.00 0.00 39.95 5.69
2212 2279 1.448893 ATAACGCACGAACCCGCAT 60.449 52.632 0.00 0.00 39.95 4.73
2213 2280 0.179105 ATAACGCACGAACCCGCATA 60.179 50.000 0.00 0.00 39.95 3.14
2214 2281 0.389556 TAACGCACGAACCCGCATAA 60.390 50.000 0.00 0.00 39.95 1.90
2215 2282 1.022451 AACGCACGAACCCGCATAAT 61.022 50.000 0.00 0.00 39.95 1.28
2216 2283 1.022451 ACGCACGAACCCGCATAATT 61.022 50.000 0.00 0.00 39.95 1.40
2217 2284 0.315869 CGCACGAACCCGCATAATTC 60.316 55.000 0.00 0.00 39.95 2.17
2218 2285 0.028902 GCACGAACCCGCATAATTCC 59.971 55.000 0.00 0.00 39.95 3.01
2219 2286 1.374560 CACGAACCCGCATAATTCCA 58.625 50.000 0.00 0.00 39.95 3.53
2220 2287 1.330521 CACGAACCCGCATAATTCCAG 59.669 52.381 0.00 0.00 39.95 3.86
2221 2288 0.307760 CGAACCCGCATAATTCCAGC 59.692 55.000 0.00 0.00 0.00 4.85
2230 2297 4.824848 GCATAATTCCAGCGAGTATACG 57.175 45.455 0.00 0.00 0.00 3.06
2231 2298 3.612860 GCATAATTCCAGCGAGTATACGG 59.387 47.826 0.00 0.00 0.00 4.02
2232 2299 2.814280 AATTCCAGCGAGTATACGGG 57.186 50.000 0.00 0.00 0.00 5.28
2233 2300 0.317479 ATTCCAGCGAGTATACGGGC 59.683 55.000 11.75 11.75 0.00 6.13
2234 2301 0.754217 TTCCAGCGAGTATACGGGCT 60.754 55.000 15.28 15.28 35.84 5.19
2235 2302 1.170919 TCCAGCGAGTATACGGGCTC 61.171 60.000 17.37 1.06 32.46 4.70
2248 2315 4.018409 GGCTCGGCCCAATTTTCT 57.982 55.556 0.00 0.00 44.06 2.52
2249 2316 1.512694 GGCTCGGCCCAATTTTCTG 59.487 57.895 0.00 0.00 44.06 3.02
2250 2317 1.512694 GCTCGGCCCAATTTTCTGG 59.487 57.895 0.00 0.00 36.10 3.86
2251 2318 1.512694 CTCGGCCCAATTTTCTGGC 59.487 57.895 0.00 0.00 44.59 4.85
2255 2322 2.056985 GCCCAATTTTCTGGCCACA 58.943 52.632 0.00 0.00 39.30 4.17
2256 2323 0.396060 GCCCAATTTTCTGGCCACAA 59.604 50.000 0.00 0.00 39.30 3.33
2257 2324 1.877680 GCCCAATTTTCTGGCCACAAC 60.878 52.381 0.00 0.00 39.30 3.32
2258 2325 1.415659 CCCAATTTTCTGGCCACAACA 59.584 47.619 0.00 0.00 34.88 3.33
2259 2326 2.548493 CCCAATTTTCTGGCCACAACAG 60.548 50.000 0.00 0.00 34.88 3.16
2260 2327 2.364970 CCAATTTTCTGGCCACAACAGA 59.635 45.455 0.00 0.00 42.81 3.41
2261 2328 3.553508 CCAATTTTCTGGCCACAACAGAG 60.554 47.826 0.00 0.00 44.91 3.35
2262 2329 1.032014 TTTTCTGGCCACAACAGAGC 58.968 50.000 0.00 0.00 44.91 4.09
2263 2330 0.823356 TTTCTGGCCACAACAGAGCC 60.823 55.000 0.00 0.00 44.91 4.70
2264 2331 2.674380 CTGGCCACAACAGAGCCC 60.674 66.667 0.00 0.00 46.55 5.19
2265 2332 4.641645 TGGCCACAACAGAGCCCG 62.642 66.667 0.00 0.00 46.55 6.13
2266 2333 4.643387 GGCCACAACAGAGCCCGT 62.643 66.667 0.00 0.00 41.00 5.28
2267 2334 2.345991 GCCACAACAGAGCCCGTA 59.654 61.111 0.00 0.00 0.00 4.02
2268 2335 1.078426 GCCACAACAGAGCCCGTAT 60.078 57.895 0.00 0.00 0.00 3.06
2269 2336 0.177141 GCCACAACAGAGCCCGTATA 59.823 55.000 0.00 0.00 0.00 1.47
2270 2337 1.935933 CCACAACAGAGCCCGTATAC 58.064 55.000 0.00 0.00 0.00 1.47
2271 2338 1.480954 CCACAACAGAGCCCGTATACT 59.519 52.381 0.56 0.00 0.00 2.12
2272 2339 2.481449 CCACAACAGAGCCCGTATACTC 60.481 54.545 0.56 0.00 0.00 2.59
2273 2340 1.404391 ACAACAGAGCCCGTATACTCG 59.596 52.381 0.56 0.00 37.99 4.18
2274 2341 1.404391 CAACAGAGCCCGTATACTCGT 59.596 52.381 0.56 0.00 37.99 4.18
2275 2342 1.307097 ACAGAGCCCGTATACTCGTC 58.693 55.000 0.56 0.00 37.99 4.20
2276 2343 0.592148 CAGAGCCCGTATACTCGTCC 59.408 60.000 0.56 0.00 37.99 4.79
2277 2344 0.883814 AGAGCCCGTATACTCGTCCG 60.884 60.000 0.56 0.00 37.99 4.79
2278 2345 0.882042 GAGCCCGTATACTCGTCCGA 60.882 60.000 0.56 0.00 0.00 4.55
2279 2346 1.162800 AGCCCGTATACTCGTCCGAC 61.163 60.000 0.56 0.00 0.00 4.79
2280 2347 1.944778 CCCGTATACTCGTCCGACC 59.055 63.158 0.56 0.00 0.00 4.79
2281 2348 1.510480 CCCGTATACTCGTCCGACCC 61.510 65.000 0.56 0.00 0.00 4.46
2282 2349 1.566563 CGTATACTCGTCCGACCCG 59.433 63.158 0.56 0.00 0.00 5.28
2283 2350 1.154205 CGTATACTCGTCCGACCCGT 61.154 60.000 0.56 0.00 0.00 5.28
2284 2351 1.865865 GTATACTCGTCCGACCCGTA 58.134 55.000 0.00 0.00 0.00 4.02
2285 2352 2.210116 GTATACTCGTCCGACCCGTAA 58.790 52.381 0.00 0.00 0.00 3.18
2286 2353 1.750193 ATACTCGTCCGACCCGTAAA 58.250 50.000 0.00 0.00 0.00 2.01
2287 2354 1.750193 TACTCGTCCGACCCGTAAAT 58.250 50.000 0.00 0.00 0.00 1.40
2288 2355 0.890683 ACTCGTCCGACCCGTAAATT 59.109 50.000 0.00 0.00 0.00 1.82
2289 2356 1.273327 ACTCGTCCGACCCGTAAATTT 59.727 47.619 0.00 0.00 0.00 1.82
2290 2357 2.289010 ACTCGTCCGACCCGTAAATTTT 60.289 45.455 0.00 0.00 0.00 1.82
2291 2358 2.738314 CTCGTCCGACCCGTAAATTTTT 59.262 45.455 0.00 0.00 0.00 1.94
2305 2372 2.430805 TTTTTACCGGAGCCCGCA 59.569 55.556 9.46 0.00 46.86 5.69
2306 2373 1.228184 TTTTTACCGGAGCCCGCAA 60.228 52.632 9.46 2.38 46.86 4.85
2307 2374 0.822532 TTTTTACCGGAGCCCGCAAA 60.823 50.000 9.46 7.53 46.86 3.68
2308 2375 1.517210 TTTTACCGGAGCCCGCAAAC 61.517 55.000 9.46 0.00 46.86 2.93
2309 2376 4.745751 TACCGGAGCCCGCAAACG 62.746 66.667 9.46 0.00 46.86 3.60
2312 2379 2.739287 CGGAGCCCGCAAACGTTA 60.739 61.111 0.00 0.00 41.17 3.18
2313 2380 2.865308 GGAGCCCGCAAACGTTAC 59.135 61.111 0.00 0.00 37.70 2.50
2314 2381 2.683859 GGAGCCCGCAAACGTTACC 61.684 63.158 0.00 0.00 37.70 2.85
2315 2382 2.670592 AGCCCGCAAACGTTACCC 60.671 61.111 0.00 0.00 37.70 3.69
2316 2383 3.740397 GCCCGCAAACGTTACCCC 61.740 66.667 0.00 0.00 37.70 4.95
2317 2384 3.057548 CCCGCAAACGTTACCCCC 61.058 66.667 0.00 0.00 37.70 5.40
2318 2385 3.424859 CCGCAAACGTTACCCCCG 61.425 66.667 0.00 0.13 37.70 5.73
2319 2386 2.357275 CGCAAACGTTACCCCCGA 60.357 61.111 0.00 0.00 33.53 5.14
2320 2387 1.742510 CGCAAACGTTACCCCCGAT 60.743 57.895 0.00 0.00 33.53 4.18
2321 2388 1.798087 GCAAACGTTACCCCCGATG 59.202 57.895 0.00 0.00 0.00 3.84
2322 2389 0.956902 GCAAACGTTACCCCCGATGT 60.957 55.000 0.00 0.00 0.00 3.06
2323 2390 1.675415 GCAAACGTTACCCCCGATGTA 60.675 52.381 0.00 0.00 0.00 2.29
2324 2391 2.273557 CAAACGTTACCCCCGATGTAG 58.726 52.381 0.00 0.00 0.00 2.74
2325 2392 1.560505 AACGTTACCCCCGATGTAGT 58.439 50.000 0.00 0.00 0.00 2.73
2326 2393 2.435372 ACGTTACCCCCGATGTAGTA 57.565 50.000 0.00 0.00 0.00 1.82
2327 2394 2.949447 ACGTTACCCCCGATGTAGTAT 58.051 47.619 0.00 0.00 0.00 2.12
2328 2395 4.098914 ACGTTACCCCCGATGTAGTATA 57.901 45.455 0.00 0.00 0.00 1.47
2329 2396 4.469657 ACGTTACCCCCGATGTAGTATAA 58.530 43.478 0.00 0.00 0.00 0.98
2330 2397 4.278419 ACGTTACCCCCGATGTAGTATAAC 59.722 45.833 0.00 0.00 0.00 1.89
2331 2398 4.520492 CGTTACCCCCGATGTAGTATAACT 59.480 45.833 0.00 0.00 0.00 2.24
2332 2399 5.705441 CGTTACCCCCGATGTAGTATAACTA 59.295 44.000 0.00 0.00 0.00 2.24
2344 2411 4.918810 AGTATAACTACGGGTTTACGGG 57.081 45.455 1.67 0.00 39.17 5.28
2345 2412 3.636764 AGTATAACTACGGGTTTACGGGG 59.363 47.826 1.67 0.00 39.17 5.73
2346 2413 0.534873 TAACTACGGGTTTACGGGGC 59.465 55.000 1.67 0.00 39.17 5.80
2347 2414 1.479368 AACTACGGGTTTACGGGGCA 61.479 55.000 0.00 0.00 38.39 5.36
2348 2415 1.153509 CTACGGGTTTACGGGGCAG 60.154 63.158 0.00 0.00 38.39 4.85
2349 2416 1.606885 CTACGGGTTTACGGGGCAGA 61.607 60.000 0.00 0.00 38.39 4.26
2350 2417 0.977108 TACGGGTTTACGGGGCAGAT 60.977 55.000 0.00 0.00 38.39 2.90
2351 2418 1.817941 CGGGTTTACGGGGCAGATG 60.818 63.158 0.00 0.00 0.00 2.90
2352 2419 2.119029 GGGTTTACGGGGCAGATGC 61.119 63.158 0.00 0.00 41.14 3.91
2353 2420 2.469516 GGTTTACGGGGCAGATGCG 61.470 63.158 0.00 0.00 43.26 4.73
2354 2421 2.124901 TTTACGGGGCAGATGCGG 60.125 61.111 0.00 0.00 43.26 5.69
2355 2422 3.690685 TTTACGGGGCAGATGCGGG 62.691 63.158 0.00 0.00 43.26 6.13
2360 2427 4.467084 GGGCAGATGCGGGTCGAA 62.467 66.667 0.00 0.00 43.26 3.71
2361 2428 2.435938 GGCAGATGCGGGTCGAAA 60.436 61.111 0.00 0.00 43.26 3.46
2362 2429 2.750888 GGCAGATGCGGGTCGAAAC 61.751 63.158 0.00 0.00 43.26 2.78
2363 2430 2.750888 GCAGATGCGGGTCGAAACC 61.751 63.158 0.00 0.00 45.65 3.27
2372 2439 1.834996 GGTCGAAACCCTATCCCCC 59.165 63.158 0.00 0.00 39.93 5.40
2386 2453 2.351276 CCCCCAGTAGCTGCGTTT 59.649 61.111 0.00 0.00 0.00 3.60
2387 2454 1.745489 CCCCCAGTAGCTGCGTTTC 60.745 63.158 0.00 0.00 0.00 2.78
2388 2455 1.745489 CCCCAGTAGCTGCGTTTCC 60.745 63.158 0.00 0.00 0.00 3.13
2389 2456 1.745489 CCCAGTAGCTGCGTTTCCC 60.745 63.158 0.00 0.00 0.00 3.97
2390 2457 1.745489 CCAGTAGCTGCGTTTCCCC 60.745 63.158 0.00 0.00 0.00 4.81
2391 2458 1.745489 CAGTAGCTGCGTTTCCCCC 60.745 63.158 0.00 0.00 0.00 5.40
2392 2459 1.918800 AGTAGCTGCGTTTCCCCCT 60.919 57.895 0.00 0.00 0.00 4.79
2393 2460 1.745489 GTAGCTGCGTTTCCCCCTG 60.745 63.158 0.00 0.00 0.00 4.45
2394 2461 1.916273 TAGCTGCGTTTCCCCCTGA 60.916 57.895 0.00 0.00 0.00 3.86
2395 2462 1.271840 TAGCTGCGTTTCCCCCTGAT 61.272 55.000 0.00 0.00 0.00 2.90
2396 2463 1.678970 GCTGCGTTTCCCCCTGATT 60.679 57.895 0.00 0.00 0.00 2.57
2397 2464 1.657751 GCTGCGTTTCCCCCTGATTC 61.658 60.000 0.00 0.00 0.00 2.52
2398 2465 1.001393 TGCGTTTCCCCCTGATTCC 60.001 57.895 0.00 0.00 0.00 3.01
2399 2466 1.753078 GCGTTTCCCCCTGATTCCC 60.753 63.158 0.00 0.00 0.00 3.97
2400 2467 1.076995 CGTTTCCCCCTGATTCCCC 60.077 63.158 0.00 0.00 0.00 4.81
2401 2468 1.858739 CGTTTCCCCCTGATTCCCCA 61.859 60.000 0.00 0.00 0.00 4.96
2402 2469 0.324368 GTTTCCCCCTGATTCCCCAC 60.324 60.000 0.00 0.00 0.00 4.61
2403 2470 1.514864 TTTCCCCCTGATTCCCCACC 61.515 60.000 0.00 0.00 0.00 4.61
2404 2471 3.809013 CCCCCTGATTCCCCACCG 61.809 72.222 0.00 0.00 0.00 4.94
2405 2472 4.506255 CCCCTGATTCCCCACCGC 62.506 72.222 0.00 0.00 0.00 5.68
2406 2473 4.856801 CCCTGATTCCCCACCGCG 62.857 72.222 0.00 0.00 0.00 6.46
2417 2484 4.101790 CACCGCGCCGCTCAATTT 62.102 61.111 7.78 0.00 0.00 1.82
2418 2485 3.799755 ACCGCGCCGCTCAATTTC 61.800 61.111 7.78 0.00 0.00 2.17
2419 2486 3.499737 CCGCGCCGCTCAATTTCT 61.500 61.111 7.78 0.00 0.00 2.52
2420 2487 2.021931 CGCGCCGCTCAATTTCTC 59.978 61.111 7.78 0.00 0.00 2.87
2421 2488 2.021931 GCGCCGCTCAATTTCTCG 59.978 61.111 0.00 0.00 0.00 4.04
2422 2489 2.021931 CGCCGCTCAATTTCTCGC 59.978 61.111 0.00 0.00 0.00 5.03
2423 2490 2.405191 GCCGCTCAATTTCTCGCC 59.595 61.111 0.00 0.00 0.00 5.54
2424 2491 2.703409 CCGCTCAATTTCTCGCCG 59.297 61.111 0.00 0.00 0.00 6.46
2425 2492 2.021931 CGCTCAATTTCTCGCCGC 59.978 61.111 0.00 0.00 0.00 6.53
2426 2493 2.405191 GCTCAATTTCTCGCCGCC 59.595 61.111 0.00 0.00 0.00 6.13
2427 2494 2.703409 CTCAATTTCTCGCCGCCG 59.297 61.111 0.00 0.00 0.00 6.46
2428 2495 2.813179 CTCAATTTCTCGCCGCCGG 61.813 63.158 0.00 0.00 34.56 6.13
2429 2496 4.536687 CAATTTCTCGCCGCCGGC 62.537 66.667 20.42 20.42 46.75 6.13
2446 2513 4.590487 CAAGCCTGCAAAGCCATG 57.410 55.556 4.82 1.85 0.00 3.66
2447 2514 1.079405 CAAGCCTGCAAAGCCATGG 60.079 57.895 7.63 7.63 0.00 3.66
2448 2515 1.228956 AAGCCTGCAAAGCCATGGA 60.229 52.632 18.40 0.00 0.00 3.41
2449 2516 1.538687 AAGCCTGCAAAGCCATGGAC 61.539 55.000 18.40 7.03 0.00 4.02
2450 2517 2.277591 GCCTGCAAAGCCATGGACA 61.278 57.895 18.40 3.79 0.00 4.02
2451 2518 1.888018 CCTGCAAAGCCATGGACAG 59.112 57.895 18.40 13.28 0.00 3.51
2452 2519 1.214589 CTGCAAAGCCATGGACAGC 59.785 57.895 18.40 13.65 0.00 4.40
2453 2520 1.228644 TGCAAAGCCATGGACAGCT 60.229 52.632 18.40 1.32 42.40 4.24
2454 2521 1.246056 TGCAAAGCCATGGACAGCTC 61.246 55.000 18.40 0.00 38.74 4.09
2455 2522 0.964358 GCAAAGCCATGGACAGCTCT 60.964 55.000 18.40 0.00 38.74 4.09
2456 2523 1.679944 GCAAAGCCATGGACAGCTCTA 60.680 52.381 18.40 0.00 38.74 2.43
2457 2524 2.286872 CAAAGCCATGGACAGCTCTAG 58.713 52.381 18.40 0.00 38.74 2.43
2458 2525 0.835941 AAGCCATGGACAGCTCTAGG 59.164 55.000 18.40 0.00 38.74 3.02
2459 2526 1.053264 AGCCATGGACAGCTCTAGGG 61.053 60.000 18.40 0.00 32.71 3.53
2460 2527 1.050988 GCCATGGACAGCTCTAGGGA 61.051 60.000 18.40 0.00 30.56 4.20
2461 2528 1.727062 CCATGGACAGCTCTAGGGAT 58.273 55.000 5.56 0.00 30.56 3.85
2462 2529 1.347050 CCATGGACAGCTCTAGGGATG 59.653 57.143 5.56 6.25 30.56 3.51
2463 2530 2.323599 CATGGACAGCTCTAGGGATGA 58.676 52.381 16.34 0.00 0.00 2.92
2464 2531 2.079170 TGGACAGCTCTAGGGATGAG 57.921 55.000 16.34 0.00 34.87 2.90
2465 2532 1.337118 GGACAGCTCTAGGGATGAGG 58.663 60.000 16.34 0.00 32.57 3.86
2466 2533 0.678950 GACAGCTCTAGGGATGAGGC 59.321 60.000 16.34 0.00 32.57 4.70
2467 2534 1.112315 ACAGCTCTAGGGATGAGGCG 61.112 60.000 16.34 0.00 32.57 5.52
2468 2535 1.532794 AGCTCTAGGGATGAGGCGG 60.533 63.158 0.00 0.00 32.57 6.13
2469 2536 1.531840 GCTCTAGGGATGAGGCGGA 60.532 63.158 0.00 0.00 32.57 5.54
2470 2537 1.531739 GCTCTAGGGATGAGGCGGAG 61.532 65.000 0.00 0.00 32.57 4.63
2493 2560 4.519437 CCGCTGCGCCAGATCTGA 62.519 66.667 24.62 2.81 32.44 3.27
2494 2561 3.260483 CGCTGCGCCAGATCTGAC 61.260 66.667 24.62 12.06 32.44 3.51
2495 2562 3.260483 GCTGCGCCAGATCTGACG 61.260 66.667 24.97 24.97 39.46 4.35
2499 2566 4.498520 CGCCAGATCTGACGCCGT 62.499 66.667 24.62 0.00 28.40 5.68
2500 2567 2.887568 GCCAGATCTGACGCCGTG 60.888 66.667 24.62 6.41 0.00 4.94
2501 2568 2.887568 CCAGATCTGACGCCGTGC 60.888 66.667 24.62 0.00 0.00 5.34
2530 2597 2.970324 GCACGTCGGTGGCTCAAA 60.970 61.111 0.00 0.00 44.54 2.69
2531 2598 2.935955 CACGTCGGTGGCTCAAAC 59.064 61.111 0.00 0.00 40.58 2.93
2532 2599 2.660552 ACGTCGGTGGCTCAAACG 60.661 61.111 10.18 10.18 39.16 3.60
2533 2600 4.072088 CGTCGGTGGCTCAAACGC 62.072 66.667 1.13 0.00 0.00 4.84
2534 2601 4.072088 GTCGGTGGCTCAAACGCG 62.072 66.667 3.53 3.53 0.00 6.01
2537 2604 2.357760 GGTGGCTCAAACGCGGTA 60.358 61.111 12.47 0.00 0.00 4.02
2538 2605 2.388232 GGTGGCTCAAACGCGGTAG 61.388 63.158 12.47 0.00 0.00 3.18
2539 2606 2.740826 TGGCTCAAACGCGGTAGC 60.741 61.111 12.47 11.35 40.74 3.58
2580 2647 4.421479 CCGCGAGCTGGACGAGTT 62.421 66.667 8.23 0.00 0.00 3.01
2581 2648 2.876645 CGCGAGCTGGACGAGTTC 60.877 66.667 0.00 0.00 0.00 3.01
2585 2652 3.243855 GAGCTGGACGAGTTCGATC 57.756 57.895 8.72 2.53 43.02 3.69
2587 2654 2.224885 GCTGGACGAGTTCGATCGC 61.225 63.158 11.09 0.00 46.60 4.58
2588 2655 1.934956 CTGGACGAGTTCGATCGCG 60.935 63.158 16.46 16.46 46.60 5.87
2589 2656 2.305826 CTGGACGAGTTCGATCGCGA 62.306 60.000 23.33 13.09 46.60 5.87
2622 2689 3.151022 CCACTCCTCCTCCGGCTC 61.151 72.222 0.00 0.00 0.00 4.70
2623 2690 3.151022 CACTCCTCCTCCGGCTCC 61.151 72.222 0.00 0.00 0.00 4.70
2624 2691 3.351885 ACTCCTCCTCCGGCTCCT 61.352 66.667 0.00 0.00 0.00 3.69
2625 2692 2.007568 ACTCCTCCTCCGGCTCCTA 61.008 63.158 0.00 0.00 0.00 2.94
2626 2693 1.228429 CTCCTCCTCCGGCTCCTAG 60.228 68.421 0.00 0.00 0.00 3.02
2627 2694 2.002018 CTCCTCCTCCGGCTCCTAGT 62.002 65.000 0.00 0.00 0.00 2.57
2628 2695 1.529713 CCTCCTCCGGCTCCTAGTC 60.530 68.421 0.00 0.00 0.00 2.59
2629 2696 1.529713 CTCCTCCGGCTCCTAGTCC 60.530 68.421 0.00 0.00 0.00 3.85
2630 2697 2.907917 CCTCCGGCTCCTAGTCCG 60.908 72.222 0.00 7.98 44.89 4.79
2631 2698 3.597728 CTCCGGCTCCTAGTCCGC 61.598 72.222 0.00 0.00 44.01 5.54
2637 2704 2.907917 CTCCTAGTCCGCGGGGAG 60.908 72.222 26.91 26.91 44.97 4.30
2640 2707 3.597728 CTAGTCCGCGGGGAGCTC 61.598 72.222 27.83 10.60 44.97 4.09
2641 2708 4.435970 TAGTCCGCGGGGAGCTCA 62.436 66.667 27.83 0.00 44.97 4.26
2642 2709 3.733507 TAGTCCGCGGGGAGCTCAT 62.734 63.158 27.83 8.27 44.97 2.90
2643 2710 4.593864 GTCCGCGGGGAGCTCATC 62.594 72.222 27.83 5.02 44.97 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
354 357 1.679944 CCATCATCGAAGCCAACCTGT 60.680 52.381 0.00 0.00 0.00 4.00
484 500 2.516930 GACATGGGCATCACCGGG 60.517 66.667 6.32 0.00 40.62 5.73
548 565 8.784043 GTCAAGAAAAGAGCTAAAATTACTCCA 58.216 33.333 0.00 0.00 0.00 3.86
575 592 8.811994 AGGTAAAAGGCTTTGCTATTTTCATTA 58.188 29.630 14.19 0.00 32.83 1.90
585 602 9.839817 TTTAAAAATAAGGTAAAAGGCTTTGCT 57.160 25.926 14.19 0.87 0.00 3.91
637 656 0.108585 TTCGCTTGGTTCTGGCTTCT 59.891 50.000 0.00 0.00 0.00 2.85
679 699 0.750546 CGACGACTGGGGGACATCTA 60.751 60.000 0.00 0.00 0.00 1.98
1370 1398 2.860972 GAAGGAACGGGAGCCAGAGC 62.861 65.000 0.00 0.00 40.32 4.09
1405 1433 0.030908 CTCATCTCGCCCGAACTACC 59.969 60.000 0.00 0.00 0.00 3.18
1495 1523 1.580385 CGTGGAGATCGTCGTCGTG 60.580 63.158 1.33 0.00 38.33 4.35
1664 1700 5.182380 CCTTTCTCGTTCCCTAGCTAGATAG 59.818 48.000 22.70 8.10 0.00 2.08
1738 1789 7.321908 TGCTTACGTACATATAACTTGGAACA 58.678 34.615 0.00 0.00 0.00 3.18
1739 1790 7.760131 TGCTTACGTACATATAACTTGGAAC 57.240 36.000 0.00 0.00 0.00 3.62
1820 1878 6.705825 ACAAGCAAAACCTGGTAATGAAAATC 59.294 34.615 14.05 0.00 33.58 2.17
1849 1907 1.597937 GCACAAGAAGACACGCAAAGG 60.598 52.381 0.00 0.00 0.00 3.11
1878 1936 0.473755 ACTGTGGTGGCATCAAGTCA 59.526 50.000 0.00 0.00 0.00 3.41
1879 1937 1.609208 AACTGTGGTGGCATCAAGTC 58.391 50.000 0.00 0.00 0.00 3.01
1880 1938 2.553028 CCTAACTGTGGTGGCATCAAGT 60.553 50.000 0.00 5.89 0.00 3.16
1881 1939 2.086869 CCTAACTGTGGTGGCATCAAG 58.913 52.381 0.00 5.21 0.00 3.02
1882 1940 1.886222 GCCTAACTGTGGTGGCATCAA 60.886 52.381 0.00 0.00 44.34 2.57
1883 1941 0.322456 GCCTAACTGTGGTGGCATCA 60.322 55.000 0.00 0.00 44.34 3.07
1884 1942 1.032114 GGCCTAACTGTGGTGGCATC 61.032 60.000 16.78 0.00 46.53 3.91
1885 1943 1.000896 GGCCTAACTGTGGTGGCAT 60.001 57.895 16.78 0.00 46.53 4.40
1886 1944 1.715019 AAGGCCTAACTGTGGTGGCA 61.715 55.000 5.16 0.00 46.53 4.92
1887 1945 0.960861 GAAGGCCTAACTGTGGTGGC 60.961 60.000 5.16 9.53 44.22 5.01
1888 1946 0.693049 AGAAGGCCTAACTGTGGTGG 59.307 55.000 5.16 0.00 0.00 4.61
1889 1947 2.568623 AAGAAGGCCTAACTGTGGTG 57.431 50.000 5.16 0.00 0.00 4.17
1890 1948 2.027100 GCTAAGAAGGCCTAACTGTGGT 60.027 50.000 5.16 0.00 0.00 4.16
1891 1949 2.237392 AGCTAAGAAGGCCTAACTGTGG 59.763 50.000 5.16 4.44 0.00 4.17
1892 1950 3.618690 AGCTAAGAAGGCCTAACTGTG 57.381 47.619 5.16 6.83 0.00 3.66
1893 1951 5.011227 GCTATAGCTAAGAAGGCCTAACTGT 59.989 44.000 17.75 0.00 38.21 3.55
1894 1952 5.474825 GCTATAGCTAAGAAGGCCTAACTG 58.525 45.833 17.75 0.00 38.21 3.16
1895 1953 5.731957 GCTATAGCTAAGAAGGCCTAACT 57.268 43.478 17.75 6.06 38.21 2.24
1978 2043 9.129209 GAGAAAAGCTTTTCATAACCATTACAC 57.871 33.333 39.40 18.16 46.81 2.90
2001 2068 3.437741 GCCGGGAAATAAAAAGAACGAGA 59.562 43.478 2.18 0.00 0.00 4.04
2002 2069 3.439129 AGCCGGGAAATAAAAAGAACGAG 59.561 43.478 2.18 0.00 0.00 4.18
2003 2070 3.189702 CAGCCGGGAAATAAAAAGAACGA 59.810 43.478 2.18 0.00 0.00 3.85
2004 2071 3.498082 CAGCCGGGAAATAAAAAGAACG 58.502 45.455 2.18 0.00 0.00 3.95
2005 2072 3.257375 ACCAGCCGGGAAATAAAAAGAAC 59.743 43.478 2.18 0.00 41.15 3.01
2007 2074 2.823154 CACCAGCCGGGAAATAAAAAGA 59.177 45.455 2.18 0.00 41.15 2.52
2050 2117 3.347216 TGGCTGGCTCTAGAAATGTTTC 58.653 45.455 2.00 0.00 37.45 2.78
2051 2118 3.009473 TCTGGCTGGCTCTAGAAATGTTT 59.991 43.478 2.00 0.00 0.00 2.83
2057 2124 2.612972 CGTTTTCTGGCTGGCTCTAGAA 60.613 50.000 2.00 0.47 0.00 2.10
2061 2128 1.968540 GCGTTTTCTGGCTGGCTCT 60.969 57.895 2.00 0.00 0.00 4.09
2092 2159 9.921637 AGATATTGGCGTTTTCTTGAAATAAAA 57.078 25.926 0.00 0.00 0.00 1.52
2093 2160 9.921637 AAGATATTGGCGTTTTCTTGAAATAAA 57.078 25.926 0.00 0.00 0.00 1.40
2096 2163 9.736023 GATAAGATATTGGCGTTTTCTTGAAAT 57.264 29.630 0.00 0.00 0.00 2.17
2097 2164 8.956426 AGATAAGATATTGGCGTTTTCTTGAAA 58.044 29.630 0.00 0.00 0.00 2.69
2098 2165 8.506168 AGATAAGATATTGGCGTTTTCTTGAA 57.494 30.769 0.00 0.00 0.00 2.69
2099 2166 8.397906 CAAGATAAGATATTGGCGTTTTCTTGA 58.602 33.333 7.81 0.00 38.92 3.02
2100 2167 8.397906 TCAAGATAAGATATTGGCGTTTTCTTG 58.602 33.333 0.00 0.00 38.30 3.02
2101 2168 8.506168 TCAAGATAAGATATTGGCGTTTTCTT 57.494 30.769 0.00 0.00 32.59 2.52
2102 2169 8.398665 GTTCAAGATAAGATATTGGCGTTTTCT 58.601 33.333 0.00 0.00 32.59 2.52
2103 2170 7.644157 GGTTCAAGATAAGATATTGGCGTTTTC 59.356 37.037 0.00 0.00 32.59 2.29
2104 2171 7.416326 GGGTTCAAGATAAGATATTGGCGTTTT 60.416 37.037 0.00 0.00 32.59 2.43
2105 2172 6.039382 GGGTTCAAGATAAGATATTGGCGTTT 59.961 38.462 0.00 0.00 32.59 3.60
2106 2173 5.531287 GGGTTCAAGATAAGATATTGGCGTT 59.469 40.000 0.00 0.00 32.59 4.84
2107 2174 5.063880 GGGTTCAAGATAAGATATTGGCGT 58.936 41.667 0.00 0.00 32.59 5.68
2108 2175 5.063204 TGGGTTCAAGATAAGATATTGGCG 58.937 41.667 0.00 0.00 32.59 5.69
2109 2176 6.151817 GGATGGGTTCAAGATAAGATATTGGC 59.848 42.308 0.00 0.00 32.59 4.52
2110 2177 6.660949 GGGATGGGTTCAAGATAAGATATTGG 59.339 42.308 0.00 0.00 32.59 3.16
2111 2178 6.372659 CGGGATGGGTTCAAGATAAGATATTG 59.627 42.308 0.00 0.00 32.98 1.90
2112 2179 6.476378 CGGGATGGGTTCAAGATAAGATATT 58.524 40.000 0.00 0.00 0.00 1.28
2113 2180 5.571658 GCGGGATGGGTTCAAGATAAGATAT 60.572 44.000 0.00 0.00 0.00 1.63
2114 2181 4.262894 GCGGGATGGGTTCAAGATAAGATA 60.263 45.833 0.00 0.00 0.00 1.98
2115 2182 3.496870 GCGGGATGGGTTCAAGATAAGAT 60.497 47.826 0.00 0.00 0.00 2.40
2116 2183 2.158813 GCGGGATGGGTTCAAGATAAGA 60.159 50.000 0.00 0.00 0.00 2.10
2117 2184 2.222027 GCGGGATGGGTTCAAGATAAG 58.778 52.381 0.00 0.00 0.00 1.73
2118 2185 1.133915 GGCGGGATGGGTTCAAGATAA 60.134 52.381 0.00 0.00 0.00 1.75
2119 2186 0.472471 GGCGGGATGGGTTCAAGATA 59.528 55.000 0.00 0.00 0.00 1.98
2120 2187 1.227383 GGCGGGATGGGTTCAAGAT 59.773 57.895 0.00 0.00 0.00 2.40
2121 2188 1.910580 GAGGCGGGATGGGTTCAAGA 61.911 60.000 0.00 0.00 0.00 3.02
2122 2189 1.452108 GAGGCGGGATGGGTTCAAG 60.452 63.158 0.00 0.00 0.00 3.02
2123 2190 0.619255 TAGAGGCGGGATGGGTTCAA 60.619 55.000 0.00 0.00 0.00 2.69
2124 2191 1.002403 TAGAGGCGGGATGGGTTCA 59.998 57.895 0.00 0.00 0.00 3.18
2125 2192 1.049289 AGTAGAGGCGGGATGGGTTC 61.049 60.000 0.00 0.00 0.00 3.62
2126 2193 0.263765 TAGTAGAGGCGGGATGGGTT 59.736 55.000 0.00 0.00 0.00 4.11
2127 2194 0.469518 GTAGTAGAGGCGGGATGGGT 60.470 60.000 0.00 0.00 0.00 4.51
2128 2195 0.178958 AGTAGTAGAGGCGGGATGGG 60.179 60.000 0.00 0.00 0.00 4.00
2129 2196 2.161030 GTAGTAGTAGAGGCGGGATGG 58.839 57.143 0.00 0.00 0.00 3.51
2130 2197 2.161030 GGTAGTAGTAGAGGCGGGATG 58.839 57.143 0.00 0.00 0.00 3.51
2131 2198 2.064215 AGGTAGTAGTAGAGGCGGGAT 58.936 52.381 0.00 0.00 0.00 3.85
2132 2199 1.516110 AGGTAGTAGTAGAGGCGGGA 58.484 55.000 0.00 0.00 0.00 5.14
2133 2200 2.361643 AAGGTAGTAGTAGAGGCGGG 57.638 55.000 0.00 0.00 0.00 6.13
2134 2201 5.803552 ACTATAAGGTAGTAGTAGAGGCGG 58.196 45.833 0.00 0.00 29.75 6.13
2135 2202 6.700352 AGACTATAAGGTAGTAGTAGAGGCG 58.300 44.000 0.00 0.00 31.61 5.52
2136 2203 7.105588 GGAGACTATAAGGTAGTAGTAGAGGC 58.894 46.154 0.00 0.00 31.61 4.70
2137 2204 8.204903 TGGAGACTATAAGGTAGTAGTAGAGG 57.795 42.308 0.00 0.00 31.61 3.69
2138 2205 8.873144 ACTGGAGACTATAAGGTAGTAGTAGAG 58.127 40.741 0.00 0.00 31.61 2.43
2139 2206 8.795899 ACTGGAGACTATAAGGTAGTAGTAGA 57.204 38.462 0.00 0.00 31.61 2.59
2140 2207 7.814107 CGACTGGAGACTATAAGGTAGTAGTAG 59.186 44.444 0.00 0.00 31.61 2.57
2141 2208 7.665690 CGACTGGAGACTATAAGGTAGTAGTA 58.334 42.308 0.00 0.00 31.61 1.82
2142 2209 6.523840 CGACTGGAGACTATAAGGTAGTAGT 58.476 44.000 0.00 0.00 34.02 2.73
2143 2210 5.409214 GCGACTGGAGACTATAAGGTAGTAG 59.591 48.000 0.00 0.00 0.00 2.57
2144 2211 5.303971 GCGACTGGAGACTATAAGGTAGTA 58.696 45.833 0.00 0.00 0.00 1.82
2145 2212 4.136051 GCGACTGGAGACTATAAGGTAGT 58.864 47.826 0.00 0.00 0.00 2.73
2146 2213 3.502979 GGCGACTGGAGACTATAAGGTAG 59.497 52.174 0.00 0.00 0.00 3.18
2147 2214 3.137913 AGGCGACTGGAGACTATAAGGTA 59.862 47.826 0.00 0.00 41.13 3.08
2148 2215 2.091775 AGGCGACTGGAGACTATAAGGT 60.092 50.000 0.00 0.00 41.13 3.50
2149 2216 2.588620 AGGCGACTGGAGACTATAAGG 58.411 52.381 0.00 0.00 41.13 2.69
2150 2217 5.769484 TTTAGGCGACTGGAGACTATAAG 57.231 43.478 0.00 0.00 43.88 1.73
2151 2218 5.451520 GCTTTTAGGCGACTGGAGACTATAA 60.452 44.000 0.00 0.00 43.88 0.98
2152 2219 4.037684 GCTTTTAGGCGACTGGAGACTATA 59.962 45.833 0.00 0.00 43.88 1.31
2153 2220 3.181474 GCTTTTAGGCGACTGGAGACTAT 60.181 47.826 0.00 0.00 43.88 2.12
2154 2221 2.165845 GCTTTTAGGCGACTGGAGACTA 59.834 50.000 0.00 0.00 43.88 2.59
2155 2222 1.066787 GCTTTTAGGCGACTGGAGACT 60.067 52.381 0.00 0.00 43.88 3.24
2156 2223 1.337823 TGCTTTTAGGCGACTGGAGAC 60.338 52.381 0.00 0.00 43.88 3.36
2157 2224 0.973632 TGCTTTTAGGCGACTGGAGA 59.026 50.000 0.00 0.00 43.88 3.71
2158 2225 1.464997 GTTGCTTTTAGGCGACTGGAG 59.535 52.381 0.00 0.00 43.88 3.86
2159 2226 1.519408 GTTGCTTTTAGGCGACTGGA 58.481 50.000 0.00 0.00 43.88 3.86
2163 2230 4.181578 TGATAGAGTTGCTTTTAGGCGAC 58.818 43.478 0.00 0.00 44.50 5.19
2164 2231 4.159693 TCTGATAGAGTTGCTTTTAGGCGA 59.840 41.667 0.00 0.00 34.52 5.54
2165 2232 4.268884 GTCTGATAGAGTTGCTTTTAGGCG 59.731 45.833 0.00 0.00 34.52 5.52
2166 2233 4.572795 GGTCTGATAGAGTTGCTTTTAGGC 59.427 45.833 0.00 0.00 0.00 3.93
2167 2234 5.119694 GGGTCTGATAGAGTTGCTTTTAGG 58.880 45.833 0.00 0.00 0.00 2.69
2168 2235 5.119694 GGGGTCTGATAGAGTTGCTTTTAG 58.880 45.833 0.00 0.00 0.00 1.85
2169 2236 4.382685 CGGGGTCTGATAGAGTTGCTTTTA 60.383 45.833 0.00 0.00 0.00 1.52
2170 2237 3.619979 CGGGGTCTGATAGAGTTGCTTTT 60.620 47.826 0.00 0.00 0.00 2.27
2171 2238 2.093447 CGGGGTCTGATAGAGTTGCTTT 60.093 50.000 0.00 0.00 0.00 3.51
2172 2239 1.482593 CGGGGTCTGATAGAGTTGCTT 59.517 52.381 0.00 0.00 0.00 3.91
2173 2240 1.115467 CGGGGTCTGATAGAGTTGCT 58.885 55.000 0.00 0.00 0.00 3.91
2174 2241 0.530870 GCGGGGTCTGATAGAGTTGC 60.531 60.000 0.00 0.00 0.00 4.17
2175 2242 0.824109 TGCGGGGTCTGATAGAGTTG 59.176 55.000 0.00 0.00 0.00 3.16
2176 2243 1.794714 ATGCGGGGTCTGATAGAGTT 58.205 50.000 0.00 0.00 0.00 3.01
2177 2244 2.628657 GTTATGCGGGGTCTGATAGAGT 59.371 50.000 0.00 0.00 0.00 3.24
2178 2245 2.351835 CGTTATGCGGGGTCTGATAGAG 60.352 54.545 0.00 0.00 36.85 2.43
2179 2246 1.611977 CGTTATGCGGGGTCTGATAGA 59.388 52.381 0.00 0.00 36.85 1.98
2180 2247 1.935300 GCGTTATGCGGGGTCTGATAG 60.935 57.143 0.00 0.00 41.69 2.08
2181 2248 0.032952 GCGTTATGCGGGGTCTGATA 59.967 55.000 0.00 0.00 41.69 2.15
2182 2249 1.227556 GCGTTATGCGGGGTCTGAT 60.228 57.895 0.00 0.00 41.69 2.90
2183 2250 2.185867 GCGTTATGCGGGGTCTGA 59.814 61.111 0.00 0.00 41.69 3.27
2192 2259 2.398036 CGGGTTCGTGCGTTATGC 59.602 61.111 0.00 0.00 46.70 3.14
2193 2260 1.701545 ATGCGGGTTCGTGCGTTATG 61.702 55.000 0.00 0.00 38.89 1.90
2194 2261 0.179105 TATGCGGGTTCGTGCGTTAT 60.179 50.000 0.00 0.00 38.89 1.89
2195 2262 0.389556 TTATGCGGGTTCGTGCGTTA 60.390 50.000 0.00 0.00 38.89 3.18
2196 2263 1.022451 ATTATGCGGGTTCGTGCGTT 61.022 50.000 0.00 0.00 38.89 4.84
2197 2264 1.022451 AATTATGCGGGTTCGTGCGT 61.022 50.000 0.00 0.00 38.89 5.24
2198 2265 0.315869 GAATTATGCGGGTTCGTGCG 60.316 55.000 0.00 0.00 38.89 5.34
2199 2266 0.028902 GGAATTATGCGGGTTCGTGC 59.971 55.000 0.00 0.00 38.89 5.34
2200 2267 1.330521 CTGGAATTATGCGGGTTCGTG 59.669 52.381 0.00 0.00 38.89 4.35
2201 2268 1.663695 CTGGAATTATGCGGGTTCGT 58.336 50.000 0.00 0.00 38.89 3.85
2202 2269 0.307760 GCTGGAATTATGCGGGTTCG 59.692 55.000 0.00 0.00 39.81 3.95
2203 2270 0.307760 CGCTGGAATTATGCGGGTTC 59.692 55.000 10.19 0.00 45.07 3.62
2204 2271 2.404083 CGCTGGAATTATGCGGGTT 58.596 52.632 10.19 0.00 45.07 4.11
2205 2272 4.141144 CGCTGGAATTATGCGGGT 57.859 55.556 10.19 0.00 45.07 5.28
2209 2276 3.612860 CCGTATACTCGCTGGAATTATGC 59.387 47.826 0.56 0.00 0.00 3.14
2210 2277 4.174009 CCCGTATACTCGCTGGAATTATG 58.826 47.826 0.56 0.00 0.00 1.90
2211 2278 3.368116 GCCCGTATACTCGCTGGAATTAT 60.368 47.826 0.56 0.00 0.00 1.28
2212 2279 2.029649 GCCCGTATACTCGCTGGAATTA 60.030 50.000 0.56 0.00 0.00 1.40
2213 2280 1.270147 GCCCGTATACTCGCTGGAATT 60.270 52.381 0.56 0.00 0.00 2.17
2214 2281 0.317479 GCCCGTATACTCGCTGGAAT 59.683 55.000 0.56 0.00 0.00 3.01
2215 2282 0.754217 AGCCCGTATACTCGCTGGAA 60.754 55.000 11.52 0.00 0.00 3.53
2216 2283 1.152819 AGCCCGTATACTCGCTGGA 60.153 57.895 11.52 0.00 0.00 3.86
2217 2284 1.286260 GAGCCCGTATACTCGCTGG 59.714 63.158 15.83 3.05 0.00 4.85
2218 2285 4.946411 GAGCCCGTATACTCGCTG 57.054 61.111 15.83 0.00 0.00 5.18
2222 2289 2.649614 GGCCGAGCCCGTATACTC 59.350 66.667 0.56 0.00 44.06 2.59
2232 2299 1.512694 CCAGAAAATTGGGCCGAGC 59.487 57.895 0.00 0.00 34.46 5.03
2233 2300 1.512694 GCCAGAAAATTGGGCCGAG 59.487 57.895 0.00 0.00 41.90 4.63
2234 2301 3.693411 GCCAGAAAATTGGGCCGA 58.307 55.556 0.00 0.00 41.90 5.54
2238 2305 1.415659 TGTTGTGGCCAGAAAATTGGG 59.584 47.619 18.24 0.00 38.72 4.12
2239 2306 2.364970 TCTGTTGTGGCCAGAAAATTGG 59.635 45.455 18.24 0.14 41.35 3.16
2240 2307 3.645884 CTCTGTTGTGGCCAGAAAATTG 58.354 45.455 18.24 7.86 38.42 2.32
2241 2308 2.036346 GCTCTGTTGTGGCCAGAAAATT 59.964 45.455 18.24 0.00 38.42 1.82
2242 2309 1.615392 GCTCTGTTGTGGCCAGAAAAT 59.385 47.619 18.24 0.00 38.42 1.82
2243 2310 1.032014 GCTCTGTTGTGGCCAGAAAA 58.968 50.000 18.24 11.60 38.42 2.29
2244 2311 0.823356 GGCTCTGTTGTGGCCAGAAA 60.823 55.000 18.24 6.81 44.69 2.52
2245 2312 1.228245 GGCTCTGTTGTGGCCAGAA 60.228 57.895 12.06 12.06 44.69 3.02
2246 2313 2.431683 GGCTCTGTTGTGGCCAGA 59.568 61.111 5.11 0.00 44.69 3.86
2249 2316 2.536997 ATACGGGCTCTGTTGTGGCC 62.537 60.000 0.00 0.00 45.35 5.36
2250 2317 0.177141 TATACGGGCTCTGTTGTGGC 59.823 55.000 0.00 0.00 0.00 5.01
2251 2318 1.480954 AGTATACGGGCTCTGTTGTGG 59.519 52.381 0.00 0.00 0.00 4.17
2252 2319 2.794981 CGAGTATACGGGCTCTGTTGTG 60.795 54.545 0.00 0.00 0.00 3.33
2253 2320 1.404391 CGAGTATACGGGCTCTGTTGT 59.596 52.381 0.00 0.00 0.00 3.32
2254 2321 1.404391 ACGAGTATACGGGCTCTGTTG 59.596 52.381 0.00 0.00 37.61 3.33
2255 2322 1.674962 GACGAGTATACGGGCTCTGTT 59.325 52.381 0.00 0.00 37.61 3.16
2256 2323 1.307097 GACGAGTATACGGGCTCTGT 58.693 55.000 0.00 0.00 37.61 3.41
2257 2324 0.592148 GGACGAGTATACGGGCTCTG 59.408 60.000 0.00 0.00 37.61 3.35
2258 2325 0.883814 CGGACGAGTATACGGGCTCT 60.884 60.000 0.00 0.00 37.61 4.09
2259 2326 0.882042 TCGGACGAGTATACGGGCTC 60.882 60.000 0.00 0.00 37.61 4.70
2260 2327 1.146930 TCGGACGAGTATACGGGCT 59.853 57.895 0.00 0.00 37.61 5.19
2261 2328 1.281049 GTCGGACGAGTATACGGGC 59.719 63.158 0.00 0.00 37.61 6.13
2262 2329 1.510480 GGGTCGGACGAGTATACGGG 61.510 65.000 1.43 0.00 37.61 5.28
2263 2330 1.835483 CGGGTCGGACGAGTATACGG 61.835 65.000 1.43 0.00 37.61 4.02
2264 2331 1.154205 ACGGGTCGGACGAGTATACG 61.154 60.000 1.43 0.00 39.31 3.06
2265 2332 1.865865 TACGGGTCGGACGAGTATAC 58.134 55.000 1.43 0.00 34.93 1.47
2266 2333 2.613026 TTACGGGTCGGACGAGTATA 57.387 50.000 12.75 4.75 34.93 1.47
2267 2334 1.750193 TTTACGGGTCGGACGAGTAT 58.250 50.000 12.75 0.00 34.93 2.12
2268 2335 1.750193 ATTTACGGGTCGGACGAGTA 58.250 50.000 1.43 6.19 34.93 2.59
2269 2336 0.890683 AATTTACGGGTCGGACGAGT 59.109 50.000 10.96 10.96 34.93 4.18
2270 2337 2.000429 AAATTTACGGGTCGGACGAG 58.000 50.000 1.43 1.10 34.93 4.18
2271 2338 2.453983 AAAATTTACGGGTCGGACGA 57.546 45.000 1.43 0.00 34.93 4.20
2296 2363 2.683859 GGTAACGTTTGCGGGCTCC 61.684 63.158 5.91 0.00 43.45 4.70
2297 2364 2.683859 GGGTAACGTTTGCGGGCTC 61.684 63.158 5.91 0.00 43.45 4.70
2298 2365 2.670592 GGGTAACGTTTGCGGGCT 60.671 61.111 5.91 0.00 43.45 5.19
2299 2366 3.740397 GGGGTAACGTTTGCGGGC 61.740 66.667 5.91 0.00 43.45 6.13
2300 2367 3.057548 GGGGGTAACGTTTGCGGG 61.058 66.667 5.91 0.00 43.45 6.13
2301 2368 3.424859 CGGGGGTAACGTTTGCGG 61.425 66.667 5.91 0.00 43.45 5.69
2302 2369 1.742510 ATCGGGGGTAACGTTTGCG 60.743 57.895 5.91 0.00 44.93 4.85
2303 2370 0.956902 ACATCGGGGGTAACGTTTGC 60.957 55.000 5.91 0.00 37.60 3.68
2304 2371 2.273557 CTACATCGGGGGTAACGTTTG 58.726 52.381 5.91 0.00 37.60 2.93
2305 2372 1.901833 ACTACATCGGGGGTAACGTTT 59.098 47.619 5.91 0.00 37.60 3.60
2306 2373 1.560505 ACTACATCGGGGGTAACGTT 58.439 50.000 5.88 5.88 37.60 3.99
2307 2374 2.435372 TACTACATCGGGGGTAACGT 57.565 50.000 0.00 0.00 37.60 3.99
2308 2375 4.520492 AGTTATACTACATCGGGGGTAACG 59.480 45.833 0.00 0.00 37.60 3.18
2321 2388 5.278315 CCCCGTAAACCCGTAGTTATACTAC 60.278 48.000 6.87 6.87 45.71 2.73
2322 2389 4.825085 CCCCGTAAACCCGTAGTTATACTA 59.175 45.833 0.00 0.00 37.88 1.82
2323 2390 3.636764 CCCCGTAAACCCGTAGTTATACT 59.363 47.826 0.00 0.00 37.88 2.12
2324 2391 3.798889 GCCCCGTAAACCCGTAGTTATAC 60.799 52.174 0.00 0.00 37.88 1.47
2325 2392 2.364002 GCCCCGTAAACCCGTAGTTATA 59.636 50.000 0.00 0.00 37.88 0.98
2326 2393 1.138859 GCCCCGTAAACCCGTAGTTAT 59.861 52.381 0.00 0.00 37.88 1.89
2327 2394 0.534873 GCCCCGTAAACCCGTAGTTA 59.465 55.000 0.00 0.00 37.88 2.24
2328 2395 1.296392 GCCCCGTAAACCCGTAGTT 59.704 57.895 0.00 0.00 41.81 2.24
2329 2396 1.891722 CTGCCCCGTAAACCCGTAGT 61.892 60.000 0.00 0.00 0.00 2.73
2330 2397 1.153509 CTGCCCCGTAAACCCGTAG 60.154 63.158 0.00 0.00 0.00 3.51
2331 2398 0.977108 ATCTGCCCCGTAAACCCGTA 60.977 55.000 0.00 0.00 0.00 4.02
2332 2399 2.295602 ATCTGCCCCGTAAACCCGT 61.296 57.895 0.00 0.00 0.00 5.28
2333 2400 1.817941 CATCTGCCCCGTAAACCCG 60.818 63.158 0.00 0.00 0.00 5.28
2334 2401 2.119029 GCATCTGCCCCGTAAACCC 61.119 63.158 0.00 0.00 34.31 4.11
2335 2402 2.469516 CGCATCTGCCCCGTAAACC 61.470 63.158 0.00 0.00 37.91 3.27
2336 2403 2.469516 CCGCATCTGCCCCGTAAAC 61.470 63.158 0.00 0.00 37.91 2.01
2337 2404 2.124901 CCGCATCTGCCCCGTAAA 60.125 61.111 0.00 0.00 37.91 2.01
2338 2405 4.169696 CCCGCATCTGCCCCGTAA 62.170 66.667 0.00 0.00 37.91 3.18
2343 2410 3.969250 TTTCGACCCGCATCTGCCC 62.969 63.158 0.00 0.00 37.91 5.36
2344 2411 2.435938 TTTCGACCCGCATCTGCC 60.436 61.111 0.00 0.00 37.91 4.85
2345 2412 2.750888 GGTTTCGACCCGCATCTGC 61.751 63.158 0.00 0.00 37.78 4.26
2346 2413 2.106683 GGGTTTCGACCCGCATCTG 61.107 63.158 0.00 0.00 40.59 2.90
2347 2414 2.267961 GGGTTTCGACCCGCATCT 59.732 61.111 0.00 0.00 40.59 2.90
2354 2421 1.834996 GGGGGATAGGGTTTCGACC 59.165 63.158 0.00 0.00 0.00 4.79
2369 2436 1.745489 GAAACGCAGCTACTGGGGG 60.745 63.158 15.00 0.00 46.52 5.40
2370 2437 1.745489 GGAAACGCAGCTACTGGGG 60.745 63.158 15.00 0.00 46.52 4.96
2372 2439 1.745489 GGGGAAACGCAGCTACTGG 60.745 63.158 0.00 0.00 43.99 4.00
2373 2440 1.745489 GGGGGAAACGCAGCTACTG 60.745 63.158 0.00 0.00 46.93 2.74
2374 2441 1.918800 AGGGGGAAACGCAGCTACT 60.919 57.895 0.00 0.00 46.93 2.57
2375 2442 1.745489 CAGGGGGAAACGCAGCTAC 60.745 63.158 0.00 0.00 46.93 3.58
2376 2443 1.271840 ATCAGGGGGAAACGCAGCTA 61.272 55.000 0.00 0.00 46.93 3.32
2377 2444 2.142292 AATCAGGGGGAAACGCAGCT 62.142 55.000 0.00 0.00 46.93 4.24
2378 2445 1.657751 GAATCAGGGGGAAACGCAGC 61.658 60.000 0.00 0.00 46.93 5.25
2379 2446 1.032114 GGAATCAGGGGGAAACGCAG 61.032 60.000 0.00 0.00 46.93 5.18
2380 2447 1.001393 GGAATCAGGGGGAAACGCA 60.001 57.895 0.00 0.00 46.93 5.24
2381 2448 1.753078 GGGAATCAGGGGGAAACGC 60.753 63.158 0.00 0.00 43.79 4.84
2382 2449 1.076995 GGGGAATCAGGGGGAAACG 60.077 63.158 0.00 0.00 0.00 3.60
2383 2450 0.324368 GTGGGGAATCAGGGGGAAAC 60.324 60.000 0.00 0.00 0.00 2.78
2384 2451 1.514864 GGTGGGGAATCAGGGGGAAA 61.515 60.000 0.00 0.00 0.00 3.13
2385 2452 1.933812 GGTGGGGAATCAGGGGGAA 60.934 63.158 0.00 0.00 0.00 3.97
2386 2453 2.286885 GGTGGGGAATCAGGGGGA 60.287 66.667 0.00 0.00 0.00 4.81
2387 2454 3.809013 CGGTGGGGAATCAGGGGG 61.809 72.222 0.00 0.00 0.00 5.40
2388 2455 4.506255 GCGGTGGGGAATCAGGGG 62.506 72.222 0.00 0.00 0.00 4.79
2389 2456 4.856801 CGCGGTGGGGAATCAGGG 62.857 72.222 0.00 0.00 0.00 4.45
2400 2467 4.101790 AAATTGAGCGGCGCGGTG 62.102 61.111 27.59 2.50 37.83 4.94
2401 2468 3.799755 GAAATTGAGCGGCGCGGT 61.800 61.111 27.59 10.39 41.33 5.68
2402 2469 3.440356 GAGAAATTGAGCGGCGCGG 62.440 63.158 27.59 11.08 0.00 6.46
2403 2470 2.021931 GAGAAATTGAGCGGCGCG 59.978 61.111 27.59 0.00 0.00 6.86
2404 2471 2.021931 CGAGAAATTGAGCGGCGC 59.978 61.111 26.86 26.86 0.00 6.53
2405 2472 2.021931 GCGAGAAATTGAGCGGCG 59.978 61.111 0.51 0.51 0.00 6.46
2406 2473 2.405191 GGCGAGAAATTGAGCGGC 59.595 61.111 0.00 0.00 41.85 6.53
2407 2474 2.703409 CGGCGAGAAATTGAGCGG 59.297 61.111 0.00 0.00 0.00 5.52
2408 2475 2.021931 GCGGCGAGAAATTGAGCG 59.978 61.111 12.98 0.00 0.00 5.03
2409 2476 2.405191 GGCGGCGAGAAATTGAGC 59.595 61.111 12.98 0.00 0.00 4.26
2410 2477 2.703409 CGGCGGCGAGAAATTGAG 59.297 61.111 29.19 0.00 0.00 3.02
2411 2478 2.817834 CCGGCGGCGAGAAATTGA 60.818 61.111 34.49 0.00 0.00 2.57
2412 2479 4.536687 GCCGGCGGCGAGAAATTG 62.537 66.667 37.09 15.17 39.62 2.32
2429 2496 1.079405 CCATGGCTTTGCAGGCTTG 60.079 57.895 0.00 10.08 46.13 4.01
2430 2497 1.228956 TCCATGGCTTTGCAGGCTT 60.229 52.632 6.96 0.00 46.13 4.35
2431 2498 1.980772 GTCCATGGCTTTGCAGGCT 60.981 57.895 6.96 0.00 46.13 4.58
2432 2499 2.221906 CTGTCCATGGCTTTGCAGGC 62.222 60.000 6.96 5.35 46.16 4.85
2433 2500 1.888018 CTGTCCATGGCTTTGCAGG 59.112 57.895 6.96 0.00 0.00 4.85
2434 2501 1.214589 GCTGTCCATGGCTTTGCAG 59.785 57.895 6.96 10.69 0.00 4.41
2435 2502 1.228644 AGCTGTCCATGGCTTTGCA 60.229 52.632 6.96 0.00 34.96 4.08
2436 2503 0.964358 AGAGCTGTCCATGGCTTTGC 60.964 55.000 6.96 8.71 39.05 3.68
2437 2504 2.286872 CTAGAGCTGTCCATGGCTTTG 58.713 52.381 6.96 0.00 39.05 2.77
2438 2505 1.211457 CCTAGAGCTGTCCATGGCTTT 59.789 52.381 6.96 0.00 39.05 3.51
2439 2506 0.835941 CCTAGAGCTGTCCATGGCTT 59.164 55.000 6.96 0.00 39.05 4.35
2440 2507 1.053264 CCCTAGAGCTGTCCATGGCT 61.053 60.000 6.96 0.00 41.88 4.75
2441 2508 1.050988 TCCCTAGAGCTGTCCATGGC 61.051 60.000 6.96 2.72 0.00 4.40
2442 2509 1.347050 CATCCCTAGAGCTGTCCATGG 59.653 57.143 4.97 4.97 0.00 3.66
2443 2510 2.299582 CTCATCCCTAGAGCTGTCCATG 59.700 54.545 0.00 0.00 0.00 3.66
2444 2511 2.607499 CTCATCCCTAGAGCTGTCCAT 58.393 52.381 0.00 0.00 0.00 3.41
2445 2512 1.412217 CCTCATCCCTAGAGCTGTCCA 60.412 57.143 0.00 0.00 0.00 4.02
2446 2513 1.337118 CCTCATCCCTAGAGCTGTCC 58.663 60.000 0.00 0.00 0.00 4.02
2447 2514 0.678950 GCCTCATCCCTAGAGCTGTC 59.321 60.000 0.00 0.00 0.00 3.51
2448 2515 1.112315 CGCCTCATCCCTAGAGCTGT 61.112 60.000 0.00 0.00 0.00 4.40
2449 2516 1.664873 CGCCTCATCCCTAGAGCTG 59.335 63.158 0.00 0.00 0.00 4.24
2450 2517 1.532794 CCGCCTCATCCCTAGAGCT 60.533 63.158 0.00 0.00 0.00 4.09
2451 2518 1.531739 CTCCGCCTCATCCCTAGAGC 61.532 65.000 0.00 0.00 0.00 4.09
2452 2519 1.531739 GCTCCGCCTCATCCCTAGAG 61.532 65.000 0.00 0.00 0.00 2.43
2453 2520 1.531840 GCTCCGCCTCATCCCTAGA 60.532 63.158 0.00 0.00 0.00 2.43
2454 2521 2.925262 CGCTCCGCCTCATCCCTAG 61.925 68.421 0.00 0.00 0.00 3.02
2455 2522 2.912542 CGCTCCGCCTCATCCCTA 60.913 66.667 0.00 0.00 0.00 3.53
2483 2550 2.887568 CACGGCGTCAGATCTGGC 60.888 66.667 22.42 20.11 0.00 4.85
2484 2551 2.887568 GCACGGCGTCAGATCTGG 60.888 66.667 22.42 8.67 0.00 3.86
2512 2579 4.980805 TTGAGCCACCGACGTGCC 62.981 66.667 0.00 0.00 38.79 5.01
2513 2580 2.970324 TTTGAGCCACCGACGTGC 60.970 61.111 0.00 0.00 38.79 5.34
2514 2581 2.935955 GTTTGAGCCACCGACGTG 59.064 61.111 0.00 0.00 39.91 4.49
2515 2582 2.660552 CGTTTGAGCCACCGACGT 60.661 61.111 0.00 0.00 0.00 4.34
2516 2583 4.072088 GCGTTTGAGCCACCGACG 62.072 66.667 0.00 0.00 36.85 5.12
2517 2584 4.072088 CGCGTTTGAGCCACCGAC 62.072 66.667 0.00 0.00 0.00 4.79
2520 2587 2.357760 TACCGCGTTTGAGCCACC 60.358 61.111 4.92 0.00 0.00 4.61
2521 2588 3.023591 GCTACCGCGTTTGAGCCAC 62.024 63.158 4.92 0.00 0.00 5.01
2522 2589 2.740826 GCTACCGCGTTTGAGCCA 60.741 61.111 4.92 0.00 0.00 4.75
2524 2591 3.849953 CGGCTACCGCGTTTGAGC 61.850 66.667 4.92 7.80 41.17 4.26
2563 2630 4.421479 AACTCGTCCAGCTCGCGG 62.421 66.667 6.13 0.00 0.00 6.46
2564 2631 2.876645 GAACTCGTCCAGCTCGCG 60.877 66.667 0.00 0.00 0.00 5.87
2565 2632 2.600122 ATCGAACTCGTCCAGCTCGC 62.600 60.000 0.00 0.00 40.80 5.03
2566 2633 0.590230 GATCGAACTCGTCCAGCTCG 60.590 60.000 0.00 0.00 40.80 5.03
2567 2634 0.590230 CGATCGAACTCGTCCAGCTC 60.590 60.000 10.26 0.00 40.80 4.09
2568 2635 1.429825 CGATCGAACTCGTCCAGCT 59.570 57.895 10.26 0.00 40.80 4.24
2569 2636 2.224885 GCGATCGAACTCGTCCAGC 61.225 63.158 21.57 0.00 40.73 4.85
2570 2637 1.934956 CGCGATCGAACTCGTCCAG 60.935 63.158 21.57 0.00 40.73 3.86
2571 2638 2.099638 CGCGATCGAACTCGTCCA 59.900 61.111 21.57 0.00 40.73 4.02
2572 2639 1.651730 CTCGCGATCGAACTCGTCC 60.652 63.158 21.57 0.00 44.98 4.79
2573 2640 2.280274 GCTCGCGATCGAACTCGTC 61.280 63.158 21.57 5.82 44.98 4.20
2574 2641 2.277373 GCTCGCGATCGAACTCGT 60.277 61.111 21.57 0.00 44.98 4.18
2575 2642 2.001361 GAGCTCGCGATCGAACTCG 61.001 63.158 21.57 13.02 44.59 4.18
2576 2643 3.896606 GAGCTCGCGATCGAACTC 58.103 61.111 21.57 14.47 46.37 3.01
2620 2687 2.907917 CTCCCCGCGGACTAGGAG 60.908 72.222 30.73 28.38 40.00 3.69
2623 2690 3.597728 GAGCTCCCCGCGGACTAG 61.598 72.222 30.73 20.97 45.59 2.57
2624 2691 3.733507 ATGAGCTCCCCGCGGACTA 62.734 63.158 30.73 10.54 45.59 2.59
2626 2693 4.593864 GATGAGCTCCCCGCGGAC 62.594 72.222 30.73 13.26 45.59 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.