>input_sequence_72523
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-------------------------------------------------------------------ATGCCGGGGAGAG
AAGACGGAGCCTCCGCCGACGAGGAGAGCTCGCAGTGCAGCAGCGGCTGCCAGTCCGGCTGGACCCTGTACCTGGAGCAC
TCCGGGTCAGGCCAGCAGCAACGTCGCACGCTGCCATACGTGCACCCCGGCGACGTCCTGAAACAGATGCTGCCGCAGGC
GGAATACTCCGACGACGACGAGGAGGACTCCATGGTCTCCGACGCGTCATCCGGCCTGCCGCCGCACCTGCGCGGCGAAG
AGGAGGAGCTGCTGCAAGTGCGAGGTCAGACCAACATGCCTTCACAGCAGCGTCGATCGGCCTTCGACGGCGACCAATGC
CACTCCGGCTGGGGTGGCAGTCGTCGCAGCGCGAGCCGCTCTGGCTCCCGTTCCTTCGTCTCCACGAGGTCTGGTAGTTC
GGGCGAGATGAGGAGCAGGAAGAAGAGGAGGGCCGTCGTCCAACGGCAGGATGAGTCGGCGACGCGTCGCCATCGTGTCT
TCCACGACGAC---GATCTCCACGACACCGCGAGCTCGTCCGGCGTCATTACTCCCGCGGCAGTGGTGGAAGCTATG---
--AAGGATGGTATGGACCTGCAGCCAAGCTGCGCCTGTGCCTTGTCGGTTCGAAGCACCGGCATGCAGGGTCTCGCGATG
CTGCACCATAACTGA-----------------------------------------------------------------
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>chr2D_1_TraesCS2D01G275900
ACGGCATCTTGGCTGCATGGTTTGCTGAGGCGGGGCGCTGATTTCTGTTTTGGCGACGACGACGATGGCATCGAGAAGAG
CTATGGTCGCGTCGTTGACTTCGGTAATCGGTTCTTCCCGGCGTGTCTGAGGTGCTCTTTCGTGGGTTGTTTGGTTGCTT
TGAAGCCGGAGCTGCGGTGGAGCGTGTTCAGGTGGTGACAATGATAGTCAGTCGGTGGTCGTTTGC-GAGGGCACGGTCG
GCGCAAGTCCTACATATTTCCCATGTGAAGCTCGTTTTT-AAAGTCGGAGTTGTCGGTTGCTCGCGCGTGTGGCCACCTG
TTGGCATGTGCCGTCATGGCTTCTATGTAGCCATTTACAGGTTGGCTTCGATGATGGA-CTCTACGGTGAAGTCGGAGTC
GCTTGTTTAGGGCAACCGGTGACGACGATGACGCTTGTGACTCCTCGGCAGATGTCTTTCTTCTTTGCAGCTCTGTGTTC
CATGT------------TGCCCGGTGATGCCCATGTCGTATGGGTTGGATTGTATTGGTTT-AGCCCGATTTTCCGTCAA
TTAATGGAGTAATTTTAGCTCTTTTCTTGACTAATGAAAATAGCAAAGCCTTT--TACCTTATTTTTAAAAAATACCGGT
TATGTGGGTCGGCTTAGAAGCCAGAACCAAGCGAAGCCCCAAGTTTGGATCCAA-GCCTAGATGTCCCCCAGTCGTCGTG
GTGTCCGCGCACGTGCACGGCTCGTTAGGGCGCACCCCTCCCACG----CCCATCCACATGTGCCCTTGTCCGTGGACAG
GAACCAAGAA-GGGAATGGCTTGCCCAGCTCAGCTGCGCCTGATATAAAACAAGTGTTTCCACTCGCCTCGAGATCCCCA
CTCCACTCTCCTCATATACACTCTACTGGCCAGCTACTGAGTACTGCAACAAGCGAGTGAACACACAGCATCGTCGCACG
CCACTGCTTAGCTTAGCCAGAGAAAAGGAGAAGCCGATCTGATTCTGCTCTCATCACACACA---CCATGCCGGGGAGAG
AAGACGGAGCCTCCGCCGACGAGGAGAGCTCGCAGTGCAGCAGCGGCTGCCAGTCCGGCTGGACCCTGTACCTGGAGCAC
TCCGGGTCAGGCCAGCAGCAACGTCGCACGCTGCCATACGTGCACCCCGGCGACGTCCTGAAACAGATGCTGCCGCAGGC
GGAATACTCCGACGACGACGAGGAGGACTCCATGGTCTCCGACGCGTCATCCGGCCTGCCGCCGCACCTGCGCGGCGAAG
AGGAGGAGCTGCTGCAAGTGCGAGGTCAGACCAACATGCCTTCACAGCAGCGTCGATCGGCCTTCGACGGCGACCAATGC
CACTCCGGCTGGGGTGGCAGTCGTCGCAGCGCGAGCCGCTCTGGCTCCCGTTCCTTCGTCTCCACGAGGTCTGGTAGTTC
GGGCGAGATGAGGAGCAGGAAGAAGAGGAGGGCCGTCGTCCAACGGCAGGATGAGTCGGCGACGCGTCGCCATCGTGTCT
TCCACGACGAC---GATCTCCACGACACCGCGAGCTCGTCCGGCGTCATTACTCCCGCGGCAGTGGTGGAAGCTATG---
--AAGGATGGTATGGACCTGCAGCCAAGCTGCGCCTGTGCCTTGTCGGTTCGAAGCACCGGCATGCAGGGTCTCGCGATG
CTGCACCATAACTGATGAACTAT--CTAGCTAGGGAACGAGAAAGGCCTTGTTTTGTCGGC---------AACCAGATCG
C----TCATAGTCTCACAGGTCACTGTTTG-------TTCCAAGTTATATGTACGTAAGCAAATCGTCCGTAGTCGAGAC
AAGAACCAACAGTTTTGATCGATCTTCTTGTACTCCTGATTTTCATTACCAGGTTTTGCTTGTTTACCTTTGCGTGTCTT
CTTGTGCTTCCAATATGACTTGATGCCACCACAGTTAGGCCTTCTTAGCTATAGCTA-------CACGTGCTTCCAACGA
AACGCATATGCACATGCATTCTGAAGAAAATTCCTAAGACTAGTGTAATGGT--TATGAAAAGCTTTTCTCGTTCTTTTT
ATTTCCCGGCTGGTGGGTCAGCATCGTCGACAATGTGAAACATTTCTAGAGCCAGCCAGAAAACGCCAATATCTTCTTTT
TTATTTCAAGAAAACGCCAATATCTTATCTTGAACCCATCCCGCCTCTACTACTACCTTATAGTCTCCAGTCGCCTAAAA
GCAACTCTATCAGACCCCGCATAACGCACGAACCCGCATAATTCCAGCGAGTATACGGGCTCGGCCCAATTTTCTGGCCA
CAACAGAGCCCGTATACTCGTCCGACCCGTAAATTTTTTACCGGAGCCCGCAAACGTTACCCCCGATGTAGTATAACTAC
GGGTTTACGGGGCAGATGCGGGTCGAAACCCTATCCCCCCAGTAGCTGCGTTTCCCCCTGATTCCCCACCGCGCCGCTCA
ATTTCTCGCCGCCGGCAAGCCTGCAAAGCCATGGACAGCTCTAGGGATGAGGCGGAGCGCCGCCGCTGCGCCAGATCTGA
CGCCGTGCGCAAGCGGGGGGCACGTCGGTGGCTCAAACGCGGTAGCCGTCCGCCGCCGGCGTTCGACCGCCGCGAGCTGG
ACGAGTTCGATCGCGAGCTCGCCCGCCGCCGCCACTCCTCCTCCGGCTCCTAGTCCGCGGGGAGCTCATCCGCGGGCGCA
TCAAGC
>chr2A_1
ACGGCATCTTGGCTGCGTGGTTTGCTGAGGCGGGGCGCTGATATCTGTTTTAGCGACGACGACAATGGCACCGAAAAGAG
CTATGATCGCGTCGTTGACTTCGGTAATATGTTCTTTCCGGCGTGTTTGAGGTGCTCTTTCGTGTGTTGTTTGGTTGCTT
TGAAGCCGGAGCTGCGATGGAGCGTGTTCAGGTGGTGACAATGATAGTCAGTCGGTGGTCGTTTGC-GAGGGCACGGTCG
GCGCAAGTCCTACATATTTCCCATGTGAAGCTCGCTTTT-AAAGTTGGAGTTGTCGGTCGCTCGCGCGTGTGGCCACTTG
TTGGCATGTGCCGTCATGGCTTCTGTGTAGCCATTTGCAGGTTGGCTTCGATGATGGA-CTCTACGGTGAAGTCAGAGTC
GCTTGTTCAGGGCAACCGGTGACGACGATGATGCTTGTGACTCCTCCGCAGATGTCTTTCTTCTTTACAGCTCTATGTTT
CATGT------------TGGCCGGTGATGCCCATGCCGTATGGGTTGGATTGTATTGGTTT-AGCCCGATTTTCCGTTAA
TTAACGGAGCAATTT-------------AACCAATGAAAATGGC-AAGCCTCTTATACCTTATGTAAAAAAAATACGGGT
TGTGTGGGTCGGCTTGGAAGCCAGAACCAAGCGAAGCCCCAAGTTTGGATCCAAAGCCGAGATGTCCCCCAGTCGTCGTG
GTGTCCGCGCACGTGCACGGCTCGTTACCGTGCACTCCTCCCACG----CCCATCCACATGTGCCCTTGTCCGTGGACAG
GAACCAAGAA-GGGAATGGGTTGCCCAGCTCAGCTGCGCCTGATATAAAACAAGTGTTTCCGCTCGCCTCGAGATCCCCA
CTCCACTCTCCTCATATACACTCTACTGGCCAGTTACCGAGTGCTGCAACAAGCGAGTGAACACACAGCATCGTCGCACG
CCACTGCTTAGCTTAGCCAGAGAAAAGGAGAAGCCGATCTGATTCTGCTCTCATCACACACA---CCATGCCGGGGAGAG
AAGATGGAGCCTCCGCCGACGAGGAGAGCTCGCAGTGCAGCAGCGGCTGCCAGTCCGGCTGGACCCTGTACCTGGAGCAT
TCCGGGTCAGGCCAACAGCAACGTCGCACGCTGCCATACGTGCAGCCCGGCGACGTCCTGAGGCAGATGCTGCCGCAGGT
GGAATACTCCGACGAGGAGGAGGAGGATTCTATGGTCTCCGACGCGTCCTCCGGCCTGCCGCCGCACCTGCGCGGCGAAG
AGGAGGAGCTGTTGCAAGTGCGAGGTCAGACCAACATGCCTTCACAGCAGCGTCGGTCGGCCTTCGGCGGCGACCAATGC
CACTCCGGCTGGGATGGCAGTCGTCGCACCGCGAGCCTCTCTGGCTCCCGTTCCTTCGTCTCCACGAGGTCTCGTAGTTC
GGGCGAGATGAGGAGCAGGAAGAAGAGGAGGGCCGTCGTCCAACGGCAGGATGAGCCGGCGACGCGTCGCCATGGTGTCT
TCGACGACGACGATGATCTCCACGACACCGCGAGTTCGTCCGGCGTCGTCGCTCCCGCAGCAGTGGTGGAAGCTACTGTA
TCAAGGATGGCATGGACCTGCAGCCAAGCTGCGCCTGTGCCTTCTCGGTTCGAAGCACCGGCATGCAGG-TCTCGCGATG
CTGCACCATAACTGATGAAGTATAGCTAGCCAGGGAACGAGAAAGGCCTTGTTTTGTCGGCCGCATGTATAATCAGATCG
CTCGATCATAGCCTCACAGTTCACCTAGCTTGTTTGTTT-CAAGTTATATGTACG-AAGCAAATCGTCCGTAGTGGAGAC
AAGAACCAACAGTTTTGATCGATCTTCGTGTACTCCTAATTTTCATTACCAGGTTTTGCTTGTTTA-CTTTGCGTGTCTT
CTTGTGCTTCCAATAC------------------TTAGGCCTTCTTAGCTATAGCCTATAGCCGCACGTGCTTCCAACGA
AACGCATATGCACATGCATTTTGGAGAAAAATCCTAAGACTAATGTAATGGTGTTATGAAAAGCTTTAGGTCTACTTTTT
ATTTCCCGGCTGGTGGGTCAGCATCGTCGACAATGTAGAACATGTCTGGAGCCAGCCAGAAAACGCCAATATCTT-----
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>chr3B_2
-CGGCATCTTCGC-GCGTGGTTTGCTGAGACGGGGCGCTGGTTTCTATTTTGACAATGAT---GATGGCGTCGAAAGGAG
CTCGGGGCGCGGCGTGGACTTTGGTAGTCGGATCTTTCCTGCATGTCCGAGGTGCTCTTTTGTGTGTTGTTTTGTTGCTT
TGAAGTCGGAGTTACGGTGGTGCGGGTCCAGGTGGTGACGATGACATGCACTCAGTAGTTGTTTGCCAAGGGCATGATCG
GCGCAAGTCTTGCATATTTCCCTTGCGATGCTCGCCGTCAAAAGTCAGAGCTGTCATTTGTTGGCGACTGTGGCCATCTT
TTGGCATGTGTCGTCGTGGCTTCCGCG--ACTGTTTGTGGGTGGGCTTCGTTGATGGAGCTCTATGGTGAAGTCGGAGTC
GCTCGTTCGAGGCAAGCGGTGATGACGATGACGCTTGCAACACCTCAGTGTATGTGTTTCTTCTTTGCAGCTCTGTGTTC
CATGTCGGTGGCCAGGTTGGCCGGTGGTGCCCATGTCATGTGGGTTGGGTTGTATCAGTTCTAACCCGGTTT-CCGTCAA
TTAACCGGGTAATTTTCT---TCTTCTTAATCATTGAAAATGGT-AAGTCTTT--TGCCT--------------------
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>chr1B_3
--GGCATCTTCGCCGCATGGTTTGCTGAGCAGGGGTGTTGGTTTCTATTTTGGCAACGAT---GATGGCGTCAAGAGGAG
CTCGGGTGGCGGC-TGGACTTCGGTAGTCGGTTCTTCCCGGCGTGTCTGAGGTGCCCTTCTGTTGGTTGGTTGGTTGCTT
TGT-GTCGGAGCTGCGGTGGAGCGAGTCCAGGTGGTGACGATTACAGGCACTCGGTGGTCATTTGCGGAGGGCACGGTTG
GCGCAAGTCCTGCATATTTTTCTTTCGATGCTCGTCGTC-AAAGTCGGAGATGTCGGTTGCTTGCACATGTGGCCATCCA
TTGGCATGTGCCGTCGTGTCTTCGGTG--GCTGTTTGCGGGTTGGCTTTAATGACGGAGCTCTATGGTGAAGTCGGAATC
GCCTGTTTGAGGTAAACGGTGATGACGATGACATTTGTGACTCCTGAGCGGATGTCTTTCTTCTTTGTAGCTACGAGTTC
CATGTCGGTGGCCAGGTTGGCCGG-GGTACCCATGCCACATGGGTTGAGTTGTATCGGTTTTGGCCCGGTTTTCCGTCAA
TTAA----------------------------------------------------------------------------
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>chr6B_18
-----------------TGGTTTGCTGAGGCGGGGCGCTGATTTCTGTTTGGG-AACGAT---GATGGTGTCGAGAGGAG
CTCGGGTTGCGGCGTGGACTTTGGTAGTCGATTCTTCCTGGCGTGTCCGAGGTGCTCTTTTGTGGGTTGCTTGGTTGCTT
TGAAGTCGAAGCTGCGGTGGAGCGGGTCCAGGTGGTAACGATGACAGGCACTAGGTGGTTGTTTGCGGAGGGCACGGTCG
GTGCAAGTCCTGCAGATTTCCCTTGCGATGCTCGTCGTC-AAAGTCGGAGTTGTCGGTTACTTGCGCGTGTGGCCATCCG
TTTGCATGTGCCGTCGTGGTTTCTGCG--GCTGTTTGTGAGTTCGCTTCGATGATGGAGCTCTTTGGTGAAGCTGGAGTC
GCCCGTTTGAGGCAACCAGTGATGACGATAACGCTTGTGACTCCTCAGCGGATGTCTTTCTTCTTTGCCGTTTTTGGTTC
CATGCCGGTTGCCAGGTTGACCGGTGGTGCCCATGTCATATGGGTTGGCTTGTATCGGTTTTAGCCTGATTTTCCTCCAA
TTAA----------------------------------------------------------------------------
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>chr2B_236
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----------------------------------------------------------------------------GTCA
GCGCAAGTCCTACATATTTTCCTTGTGAAGCTTGTTTTT-ACAGTCCGAGCCGTCGGTTGCTCGCGCGTGTGGCCACCTG
TTGGCATGTGCCGTCATGACTTCTGTGTAGCTGTTTGCGGGTTGACTTCGATGATGGAGCTCTACGGTGAAGTCGGAGTC
GCTTGTTCGAGGCAACTGGTGATGACGATGATGCTTGCAATTCCTCGGCGGATGTCTTTCTTCTTTGCAGCCATGCGTTC
CATGTGGGTGGCCAGGTTGGCTGGTGATACCCTTGTCGGATGGGTTGGATTGTATTGGTTT-AGCCCGATTTTTCGTCAA
TTAACAGGGCAATCTTAACTCTTTTCTTGATCAATGAAAATGGC-AAGCCTTT--TACCTTATTTAGAAAAAATACCGGT
TATGTGGGTCGGCTTGGAAGCCAGAACCAAGCGAAGCCCCGTGTTTGGATCC-AAGCCGAGATGTCCCCAAGTCGTCGTG
GTGTCCTCGCACGTGCACGGCTCGTTAGCGTGCACTCCTCCCACGTACGCCCATCCACATGTGCCCTTGTCCGTGGACAG
GAACCAAGAAGGGGAATGGGTTGCC-----CAGCTGCGCCTGATATAAAACAAATGTTTCCACTCGCCTCGAGATCCCCA
CTCCACTCTCCTCATATACACTCTACTGGCCAGCTACTGAGTACTGCAACAAGCGAGCGAACACACAGCATCGTCGCACG
CCATTGCTTAGTAGCCAGG--GAAAAAGAGAAGCCGATCTGATTCTGCTCTCATCACACACACCGCCATGCCGGGGAGAG
AAGACGAAGCCTTCGCTGACGAGGAGAGCTCGCAGTGCAGCAGCGGCTGCCAGTCCGGCTGGACCCTGTACCTGGAGCAT
TCCGGGTCAGGCCAGCAGCAACGTCGCACGCTGCCATACGTGCAGCCCGGCGACGTCCTGAGGCAGATGCTGCCGCAGGT
GGAATACTCCGACGACGAGGAGGAGGATTCTATGGTCTCCGACGCGTCCTCCGGCCTGCCGCCGCACCTGCGCGGCGAAG
AGGAAGAGCTGCTGCAAGTGCAAGGTCAGACCAGCATGCTTTCACAGCAGCGTCGGTCGGCCTTCGGCGGCGACCAATGC
CACTCCGGCTGGGGTGGCAGTCGTCACAGCGCGAGCCTCTCTGGCTCCCGTTCCTTCATCTCCACGAGGTCTCGTAGTTC
GGGCGATATGAGGAGCAGGAAGAAGAGGAGGGCCGTCGTCCAACGGCAGGATGAGCCGGCGACGCGTCGCCATGGTGTCT
TCGACGACGACGACGATCTCCACGACACCGCGAGTTCGTCCGACGTCATTGCTCCCGCGGCAGTGGTGGAAGCTATG---
--AAGGATGGTATGGACCTGCAGCCAAGCTGCGCCT------TCTCGGTTCGAAGCACCGGCATGCAGGGTCTCGCGATG
CTGCACCATAACTCATGAAGTA--GCTAGCTAGGGAACGAGAACGGCCTTCTTTTGTCGGCCGCATGTATAACCAGATCG
C----CCATAGCCTCACACGTCACCTAGCTTGTTTGTTTCCAAGTTATATGTACGTATGCAAATCGTCCGTACTCGAGAC
AAGAACCAACAGTTTTGATCGATCTTCTTGTACTCCTAATTTTCATTACCAGGTTTTGCTTGTTTA-TTTTGCGTGTCTT
CTTGTGCTTCCAATAC------------------TTAGGCCTTCTTAGCTATAGCTA-------CACGTGCTTCCAACGA
AACGCATATGCACATGCATTCTGGAGAAAATTCCGAAGACTAATGCAATGGT--CATGAAAAGCTTTAGGTCTACTTTTT
ATTTCCCAGC----------------------------------------------------------------------
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>SNPs
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------------------------S-----------S-------------------------------------------
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-------------------S------------------------------------------------------------
----S------------S-------------S---------S--S--------------------SS-------------
---------------S------------------------------------------S---------------------
----------------------------S-S----S--------------------------------------------
-------------------S------------------------------------------------------------
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-------------------------------------------------------------------------------S
--------------------------------------------S----------------SS----------------S
------------------S--------S--S-----------------S-------------------------------
-------------------------------------------------------S----------S-------------
-------------------------------------S----------------------------------S-------
-------------------------------------------------------S-----------------S------
--S-------------------------------S---------------S-----------------------------
-------------------------------------------S------------------------------------
-------------------S------------------------------------------------------------
-----------S------------SSSSSS--------------------------------------------------
-------------------------------------S----------------------------S-------------
---------------SSSSSSSSSSSSSSSSSSS----------------------------------------------
-----------------------S------------------S------------------------SSSSS-S------
------------------------------------SS-----S---S---------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_656
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----------------------------------------------------------------------------CGGT
TATGTGGGTCGGCTTA----------------------------------------------------------------
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>reverse_2266
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-------------------------GCACGAACCCGCATAATTCC-----------------------------------
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