Multiple sequence alignment - TraesCS2D01G267500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G267500 chr2D 100.000 2972 0 0 1 2972 326787991 326785020 0.000000e+00 5489
1 TraesCS2D01G267500 chr2D 92.328 378 17 2 207 578 293156099 293156470 7.300000e-146 527
2 TraesCS2D01G267500 chr2D 92.105 380 18 2 207 580 124470065 124470438 2.620000e-145 525
3 TraesCS2D01G267500 chr2D 92.513 374 15 3 213 580 595905616 595905250 9.440000e-145 523
4 TraesCS2D01G267500 chr2D 91.842 380 19 2 207 580 638443939 638443566 1.220000e-143 520
5 TraesCS2D01G267500 chr2A 95.627 2378 48 13 589 2947 431080075 431077735 0.000000e+00 3764
6 TraesCS2D01G267500 chr2A 88.785 214 11 4 4 209 431080285 431080077 1.770000e-62 250
7 TraesCS2D01G267500 chr2B 92.765 2391 73 40 591 2934 396405834 396403497 0.000000e+00 3365
8 TraesCS2D01G267500 chr2B 88.587 184 8 3 1 176 396406419 396406241 8.350000e-51 211
9 TraesCS2D01G267500 chr5D 92.632 380 16 2 207 580 384477571 384477198 1.210000e-148 536
10 TraesCS2D01G267500 chr5D 92.368 380 17 2 207 580 255469890 255469517 5.640000e-147 531
11 TraesCS2D01G267500 chr1D 92.819 376 15 2 211 580 94047948 94047579 4.360000e-148 534
12 TraesCS2D01G267500 chr6D 92.368 380 17 2 207 580 30010303 30009930 5.640000e-147 531
13 TraesCS2D01G267500 chr4D 91.842 380 19 3 207 580 440803711 440803338 1.220000e-143 520


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G267500 chr2D 326785020 326787991 2971 True 5489 5489 100.000 1 2972 1 chr2D.!!$R1 2971
1 TraesCS2D01G267500 chr2A 431077735 431080285 2550 True 2007 3764 92.206 4 2947 2 chr2A.!!$R1 2943
2 TraesCS2D01G267500 chr2B 396403497 396406419 2922 True 1788 3365 90.676 1 2934 2 chr2B.!!$R1 2933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 660 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.0 0.00 0.0 0.00 6.13 F
341 710 0.039165 CGCCTCACAGATATGCGCTA 60.039 55.0 9.73 0.0 38.69 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 2243 1.133407 GGAGTACCAGACGAAGAGCAG 59.867 57.143 0.00 0.0 35.97 4.24 R
2324 2756 1.001068 TGGAACAAACCGCGATACAGA 59.999 47.619 8.23 0.0 31.92 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.238759 GCACTTTTCTTTCTTTTGAGGAGCTA 60.239 38.462 0.00 0.00 0.00 3.32
102 103 0.162933 ACGCACGCGAACAGTATTTG 59.837 50.000 19.66 0.00 42.83 2.32
198 567 4.142600 ACTGACTCTTGTTGTGTTTCTTGC 60.143 41.667 0.00 0.00 0.00 4.01
201 570 3.181510 ACTCTTGTTGTGTTTCTTGCGTC 60.182 43.478 0.00 0.00 0.00 5.19
206 575 2.017138 TGTGTTTCTTGCGTCTGTGA 57.983 45.000 0.00 0.00 0.00 3.58
209 578 3.242706 TGTGTTTCTTGCGTCTGTGATTG 60.243 43.478 0.00 0.00 0.00 2.67
211 580 2.542020 TTCTTGCGTCTGTGATTGGA 57.458 45.000 0.00 0.00 0.00 3.53
213 582 1.069978 TCTTGCGTCTGTGATTGGACA 59.930 47.619 0.00 0.00 33.19 4.02
214 583 1.872952 CTTGCGTCTGTGATTGGACAA 59.127 47.619 0.00 0.00 33.19 3.18
215 584 1.960417 TGCGTCTGTGATTGGACAAA 58.040 45.000 0.00 0.00 33.19 2.83
217 586 2.884012 TGCGTCTGTGATTGGACAAATT 59.116 40.909 0.00 0.00 33.19 1.82
218 587 3.317711 TGCGTCTGTGATTGGACAAATTT 59.682 39.130 0.00 0.00 33.19 1.82
219 588 3.670055 GCGTCTGTGATTGGACAAATTTG 59.330 43.478 16.67 16.67 33.19 2.32
220 589 4.556501 GCGTCTGTGATTGGACAAATTTGA 60.557 41.667 24.64 2.30 33.19 2.69
222 591 6.151691 CGTCTGTGATTGGACAAATTTGATT 58.848 36.000 24.64 2.84 33.19 2.57
223 592 6.642131 CGTCTGTGATTGGACAAATTTGATTT 59.358 34.615 24.64 2.04 33.19 2.17
224 593 7.807433 CGTCTGTGATTGGACAAATTTGATTTA 59.193 33.333 24.64 7.59 33.19 1.40
225 594 9.643693 GTCTGTGATTGGACAAATTTGATTTAT 57.356 29.630 24.64 11.69 33.19 1.40
249 618 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
250 619 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
251 620 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
252 621 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
253 622 8.322906 ACGAAATCAAATCACAGAATGAACTA 57.677 30.769 0.00 0.00 41.93 2.24
254 623 8.950210 ACGAAATCAAATCACAGAATGAACTAT 58.050 29.630 0.00 0.00 41.93 2.12
255 624 9.430838 CGAAATCAAATCACAGAATGAACTATC 57.569 33.333 0.00 0.00 41.93 2.08
256 625 9.727627 GAAATCAAATCACAGAATGAACTATCC 57.272 33.333 0.00 0.00 41.93 2.59
257 626 6.908870 TCAAATCACAGAATGAACTATCCG 57.091 37.500 0.00 0.00 41.93 4.18
258 627 6.406370 TCAAATCACAGAATGAACTATCCGT 58.594 36.000 0.00 0.00 41.93 4.69
259 628 7.552459 TCAAATCACAGAATGAACTATCCGTA 58.448 34.615 0.00 0.00 41.93 4.02
260 629 8.204160 TCAAATCACAGAATGAACTATCCGTAT 58.796 33.333 0.00 0.00 41.93 3.06
261 630 8.830580 CAAATCACAGAATGAACTATCCGTATT 58.169 33.333 0.00 0.00 41.93 1.89
262 631 8.964476 AATCACAGAATGAACTATCCGTATTT 57.036 30.769 0.00 0.00 41.93 1.40
263 632 8.594881 ATCACAGAATGAACTATCCGTATTTC 57.405 34.615 0.00 0.00 41.93 2.17
264 633 7.552459 TCACAGAATGAACTATCCGTATTTCA 58.448 34.615 0.00 0.00 39.69 2.69
265 634 7.491372 TCACAGAATGAACTATCCGTATTTCAC 59.509 37.037 0.00 0.00 39.69 3.18
266 635 6.475727 ACAGAATGAACTATCCGTATTTCACG 59.524 38.462 0.00 0.00 45.51 4.35
267 636 6.562270 CAGAATGAACTATCCGTATTTCACGC 60.562 42.308 0.00 0.00 44.83 5.34
268 637 9.583332 CAGAATGAACTATCCGTATTTCACGCG 62.583 44.444 3.53 3.53 44.83 6.01
273 642 3.775314 CGTATTTCACGCGGCTGA 58.225 55.556 12.47 2.44 45.03 4.26
274 643 1.343821 CGTATTTCACGCGGCTGAC 59.656 57.895 12.47 0.00 45.03 3.51
275 644 1.713830 GTATTTCACGCGGCTGACC 59.286 57.895 12.47 0.00 0.00 4.02
276 645 0.739813 GTATTTCACGCGGCTGACCT 60.740 55.000 12.47 0.00 0.00 3.85
277 646 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
278 647 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
279 648 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
280 649 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
281 650 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
282 651 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
283 652 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
284 653 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
285 654 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
286 655 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
287 656 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
288 657 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
289 658 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
290 659 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
291 660 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
292 661 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
293 662 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
294 663 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
295 664 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
296 665 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
297 666 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
298 667 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
299 668 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
300 669 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
301 670 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
309 678 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
310 679 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
311 680 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
312 681 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
313 682 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
314 683 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
315 684 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
316 685 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
317 686 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
318 687 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
319 688 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
320 689 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
321 690 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
322 691 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
323 692 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
324 693 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
325 694 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
326 695 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
327 696 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
328 697 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
329 698 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
330 699 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
332 701 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
333 702 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
334 703 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
335 704 1.066215 TGTGCAACGCCTCACAGATAT 60.066 47.619 0.00 0.00 42.39 1.63
336 705 1.328680 GTGCAACGCCTCACAGATATG 59.671 52.381 0.00 0.00 33.63 1.78
337 706 0.305922 GCAACGCCTCACAGATATGC 59.694 55.000 0.00 0.00 0.00 3.14
339 708 3.238260 CGCCTCACAGATATGCGC 58.762 61.111 0.00 0.00 38.69 6.09
340 709 1.300465 CGCCTCACAGATATGCGCT 60.300 57.895 9.73 0.00 38.69 5.92
341 710 0.039165 CGCCTCACAGATATGCGCTA 60.039 55.000 9.73 0.00 38.69 4.26
342 711 1.423395 GCCTCACAGATATGCGCTAC 58.577 55.000 9.73 0.00 0.00 3.58
343 712 1.269778 GCCTCACAGATATGCGCTACA 60.270 52.381 9.73 0.00 0.00 2.74
344 713 2.398498 CCTCACAGATATGCGCTACAC 58.602 52.381 9.73 0.00 0.00 2.90
345 714 2.035193 CCTCACAGATATGCGCTACACT 59.965 50.000 9.73 0.00 0.00 3.55
346 715 3.048501 CTCACAGATATGCGCTACACTG 58.951 50.000 9.73 15.22 0.00 3.66
347 716 1.524355 CACAGATATGCGCTACACTGC 59.476 52.381 9.73 0.00 0.00 4.40
348 717 1.143305 CAGATATGCGCTACACTGCC 58.857 55.000 9.73 0.00 0.00 4.85
349 718 0.752658 AGATATGCGCTACACTGCCA 59.247 50.000 9.73 0.00 0.00 4.92
350 719 1.143305 GATATGCGCTACACTGCCAG 58.857 55.000 9.73 0.00 0.00 4.85
351 720 0.882042 ATATGCGCTACACTGCCAGC 60.882 55.000 9.73 0.00 0.00 4.85
355 724 3.181967 GCTACACTGCCAGCGTCG 61.182 66.667 0.00 0.00 0.00 5.12
356 725 3.181967 CTACACTGCCAGCGTCGC 61.182 66.667 9.80 9.80 0.00 5.19
357 726 3.914605 CTACACTGCCAGCGTCGCA 62.915 63.158 21.09 0.00 34.41 5.10
358 727 3.295304 TACACTGCCAGCGTCGCAT 62.295 57.895 21.09 1.30 35.25 4.73
359 728 3.857854 CACTGCCAGCGTCGCATC 61.858 66.667 21.09 8.16 35.25 3.91
365 734 3.842126 CAGCGTCGCATCCGTGTG 61.842 66.667 21.09 2.74 37.19 3.82
366 735 4.050934 AGCGTCGCATCCGTGTGA 62.051 61.111 21.09 0.00 42.28 3.58
367 736 2.885644 GCGTCGCATCCGTGTGAT 60.886 61.111 13.44 0.00 45.74 3.06
368 737 2.860628 GCGTCGCATCCGTGTGATC 61.861 63.158 13.44 0.00 45.74 2.92
369 738 1.516169 CGTCGCATCCGTGTGATCA 60.516 57.895 0.00 0.00 45.74 2.92
370 739 1.474648 CGTCGCATCCGTGTGATCAG 61.475 60.000 0.00 0.00 45.74 2.90
371 740 0.179137 GTCGCATCCGTGTGATCAGA 60.179 55.000 0.00 0.00 45.74 3.27
372 741 0.530288 TCGCATCCGTGTGATCAGAA 59.470 50.000 0.00 0.00 39.80 3.02
373 742 1.067213 TCGCATCCGTGTGATCAGAAA 60.067 47.619 0.00 0.00 39.80 2.52
374 743 1.731709 CGCATCCGTGTGATCAGAAAA 59.268 47.619 0.00 0.00 38.10 2.29
375 744 2.352651 CGCATCCGTGTGATCAGAAAAT 59.647 45.455 0.00 0.00 38.10 1.82
376 745 3.181507 CGCATCCGTGTGATCAGAAAATT 60.182 43.478 0.00 0.00 38.10 1.82
377 746 4.033932 CGCATCCGTGTGATCAGAAAATTA 59.966 41.667 0.00 0.00 38.10 1.40
378 747 5.266242 GCATCCGTGTGATCAGAAAATTAC 58.734 41.667 0.00 0.00 0.00 1.89
379 748 5.065218 GCATCCGTGTGATCAGAAAATTACT 59.935 40.000 0.00 0.00 0.00 2.24
380 749 6.257849 GCATCCGTGTGATCAGAAAATTACTA 59.742 38.462 0.00 0.00 0.00 1.82
381 750 7.201609 GCATCCGTGTGATCAGAAAATTACTAA 60.202 37.037 0.00 0.00 0.00 2.24
382 751 7.827819 TCCGTGTGATCAGAAAATTACTAAG 57.172 36.000 0.00 0.00 0.00 2.18
383 752 7.383687 TCCGTGTGATCAGAAAATTACTAAGT 58.616 34.615 0.00 0.00 0.00 2.24
384 753 7.544566 TCCGTGTGATCAGAAAATTACTAAGTC 59.455 37.037 0.00 0.00 0.00 3.01
385 754 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
386 755 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
387 756 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
388 757 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
389 758 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
390 759 9.208022 TGATCAGAAAATTACTAAGTCAGTGTG 57.792 33.333 0.00 0.00 38.24 3.82
391 760 7.421530 TCAGAAAATTACTAAGTCAGTGTGC 57.578 36.000 0.00 0.00 38.24 4.57
392 761 6.989759 TCAGAAAATTACTAAGTCAGTGTGCA 59.010 34.615 0.00 0.00 38.24 4.57
393 762 7.171508 TCAGAAAATTACTAAGTCAGTGTGCAG 59.828 37.037 0.00 0.00 38.24 4.41
394 763 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
395 764 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
396 765 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
397 766 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
398 767 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
399 768 2.048222 GTCAGTGTGCAGCGCCTA 60.048 61.111 2.29 0.00 0.00 3.93
400 769 1.667830 GTCAGTGTGCAGCGCCTAA 60.668 57.895 2.29 0.00 0.00 2.69
401 770 1.070615 TCAGTGTGCAGCGCCTAAA 59.929 52.632 2.29 0.00 0.00 1.85
402 771 0.533978 TCAGTGTGCAGCGCCTAAAA 60.534 50.000 2.29 0.00 0.00 1.52
403 772 0.110056 CAGTGTGCAGCGCCTAAAAG 60.110 55.000 2.29 0.00 0.00 2.27
404 773 1.442688 GTGTGCAGCGCCTAAAAGC 60.443 57.895 2.29 0.00 0.00 3.51
405 774 1.600636 TGTGCAGCGCCTAAAAGCT 60.601 52.632 2.29 0.00 45.74 3.74
406 775 0.321210 TGTGCAGCGCCTAAAAGCTA 60.321 50.000 2.29 0.00 42.52 3.32
407 776 0.375106 GTGCAGCGCCTAAAAGCTAG 59.625 55.000 2.29 0.00 42.52 3.42
408 777 0.744414 TGCAGCGCCTAAAAGCTAGG 60.744 55.000 2.29 0.00 42.52 3.02
413 782 4.954933 CCTAAAAGCTAGGCGCCA 57.045 55.556 31.54 14.00 40.39 5.69
414 783 2.394604 CCTAAAAGCTAGGCGCCAC 58.605 57.895 31.54 17.93 40.39 5.01
415 784 0.392461 CCTAAAAGCTAGGCGCCACA 60.392 55.000 31.54 15.42 40.39 4.17
416 785 0.727398 CTAAAAGCTAGGCGCCACAC 59.273 55.000 31.54 17.11 40.39 3.82
417 786 0.323629 TAAAAGCTAGGCGCCACACT 59.676 50.000 31.54 19.31 40.39 3.55
418 787 0.323629 AAAAGCTAGGCGCCACACTA 59.676 50.000 31.54 11.42 40.39 2.74
419 788 0.541863 AAAGCTAGGCGCCACACTAT 59.458 50.000 31.54 9.39 40.39 2.12
420 789 1.410004 AAGCTAGGCGCCACACTATA 58.590 50.000 31.54 10.17 40.39 1.31
421 790 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
422 791 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
423 792 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
424 793 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
435 804 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
436 805 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
437 806 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
438 807 5.572865 ACTATACAGTGTAGCGCCTAGCTC 61.573 50.000 2.29 0.00 43.12 4.09
448 817 2.187946 CCTAGCTCCCAGGCGTTG 59.812 66.667 0.00 0.00 37.29 4.10
449 818 2.512515 CTAGCTCCCAGGCGTTGC 60.513 66.667 0.00 0.00 37.29 4.17
450 819 3.315142 CTAGCTCCCAGGCGTTGCA 62.315 63.158 0.00 0.00 37.29 4.08
451 820 3.605749 TAGCTCCCAGGCGTTGCAC 62.606 63.158 0.00 0.00 37.29 4.57
453 822 2.662596 CTCCCAGGCGTTGCACTA 59.337 61.111 0.00 0.00 0.00 2.74
454 823 1.448540 CTCCCAGGCGTTGCACTAG 60.449 63.158 0.00 0.00 0.00 2.57
455 824 2.172483 CTCCCAGGCGTTGCACTAGT 62.172 60.000 0.00 0.00 0.00 2.57
456 825 2.034879 CCCAGGCGTTGCACTAGTG 61.035 63.158 18.93 18.93 0.00 2.74
466 835 4.409342 CACTAGTGCAGCGCCTAG 57.591 61.111 10.54 14.52 36.35 3.02
476 845 2.105930 GCGCCTAGCTCTCAGGTG 59.894 66.667 9.81 9.81 44.90 4.00
477 846 2.105930 CGCCTAGCTCTCAGGTGC 59.894 66.667 1.68 0.00 36.90 5.01
478 847 2.422231 CGCCTAGCTCTCAGGTGCT 61.422 63.158 1.68 0.00 43.49 4.40
479 848 1.143620 GCCTAGCTCTCAGGTGCTG 59.856 63.158 2.99 0.00 41.56 4.41
480 849 1.143620 CCTAGCTCTCAGGTGCTGC 59.856 63.158 0.00 0.00 41.56 5.25
481 850 1.611474 CCTAGCTCTCAGGTGCTGCA 61.611 60.000 0.00 0.00 41.56 4.41
482 851 0.459934 CTAGCTCTCAGGTGCTGCAC 60.460 60.000 24.02 24.02 41.56 4.57
483 852 0.902048 TAGCTCTCAGGTGCTGCACT 60.902 55.000 29.54 14.65 41.56 4.40
484 853 0.902048 AGCTCTCAGGTGCTGCACTA 60.902 55.000 29.54 15.76 40.25 2.74
485 854 0.459934 GCTCTCAGGTGCTGCACTAG 60.460 60.000 29.54 22.92 34.40 2.57
486 855 0.894141 CTCTCAGGTGCTGCACTAGT 59.106 55.000 29.54 13.81 34.40 2.57
487 856 0.605083 TCTCAGGTGCTGCACTAGTG 59.395 55.000 29.54 23.05 34.40 2.74
506 875 4.079850 AGGTGCAGCGCCTGAGAG 62.080 66.667 27.39 0.00 43.37 3.20
516 885 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
517 886 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
518 887 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
519 888 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
535 904 2.676471 GGGGCAGCCGTGTGAAAT 60.676 61.111 5.00 0.00 0.00 2.17
536 905 1.377987 GGGGCAGCCGTGTGAAATA 60.378 57.895 5.00 0.00 0.00 1.40
537 906 1.376609 GGGGCAGCCGTGTGAAATAG 61.377 60.000 5.00 0.00 0.00 1.73
538 907 0.676782 GGGCAGCCGTGTGAAATAGT 60.677 55.000 5.00 0.00 0.00 2.12
539 908 1.165270 GGCAGCCGTGTGAAATAGTT 58.835 50.000 0.00 0.00 0.00 2.24
540 909 1.539827 GGCAGCCGTGTGAAATAGTTT 59.460 47.619 0.00 0.00 0.00 2.66
541 910 2.414161 GGCAGCCGTGTGAAATAGTTTC 60.414 50.000 0.00 0.00 40.08 2.78
542 911 2.225491 GCAGCCGTGTGAAATAGTTTCA 59.775 45.455 1.24 1.24 46.68 2.69
552 921 5.917541 TGAAATAGTTTCACGGACAGTTC 57.082 39.130 1.24 0.00 44.21 3.01
553 922 5.361427 TGAAATAGTTTCACGGACAGTTCA 58.639 37.500 1.24 0.00 44.21 3.18
554 923 5.995282 TGAAATAGTTTCACGGACAGTTCAT 59.005 36.000 1.24 0.00 44.21 2.57
555 924 6.485313 TGAAATAGTTTCACGGACAGTTCATT 59.515 34.615 1.24 0.00 44.21 2.57
556 925 6.481954 AATAGTTTCACGGACAGTTCATTC 57.518 37.500 0.00 0.00 0.00 2.67
557 926 4.073293 AGTTTCACGGACAGTTCATTCT 57.927 40.909 0.00 0.00 0.00 2.40
558 927 3.809832 AGTTTCACGGACAGTTCATTCTG 59.190 43.478 0.00 0.00 40.80 3.02
560 929 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
562 931 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
563 932 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
564 933 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
565 934 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
566 935 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
567 936 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
568 937 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
569 938 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
570 939 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
571 940 7.080099 ACAGTTCATTCTGTGATTTGATTTCG 58.920 34.615 0.00 0.00 45.40 3.46
572 941 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
573 942 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
574 943 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
575 944 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
576 945 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
577 946 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
579 948 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
580 949 7.210174 TCTGTGATTTGATTTCGTCTATAGGG 58.790 38.462 0.00 0.00 0.00 3.53
581 950 5.758296 TGTGATTTGATTTCGTCTATAGGGC 59.242 40.000 0.00 0.00 0.00 5.19
582 951 5.992217 GTGATTTGATTTCGTCTATAGGGCT 59.008 40.000 0.00 0.00 0.00 5.19
583 952 6.483640 GTGATTTGATTTCGTCTATAGGGCTT 59.516 38.462 0.00 0.00 0.00 4.35
584 953 6.483307 TGATTTGATTTCGTCTATAGGGCTTG 59.517 38.462 0.00 0.00 0.00 4.01
585 954 5.607939 TTGATTTCGTCTATAGGGCTTGA 57.392 39.130 0.00 0.00 0.00 3.02
586 955 5.201713 TGATTTCGTCTATAGGGCTTGAG 57.798 43.478 0.00 0.00 0.00 3.02
587 956 4.893524 TGATTTCGTCTATAGGGCTTGAGA 59.106 41.667 0.00 0.00 0.00 3.27
588 957 4.920640 TTTCGTCTATAGGGCTTGAGAG 57.079 45.455 0.00 0.00 0.00 3.20
705 1078 2.060980 GGTGAGCCTCCCGAGTGAT 61.061 63.158 0.00 0.00 0.00 3.06
754 1142 0.250770 GGGACGACAGGGAAAAAGCT 60.251 55.000 0.00 0.00 0.00 3.74
755 1143 1.002773 GGGACGACAGGGAAAAAGCTA 59.997 52.381 0.00 0.00 0.00 3.32
756 1144 2.347731 GGACGACAGGGAAAAAGCTAG 58.652 52.381 0.00 0.00 0.00 3.42
757 1145 1.732809 GACGACAGGGAAAAAGCTAGC 59.267 52.381 6.62 6.62 0.00 3.42
758 1146 0.721718 CGACAGGGAAAAAGCTAGCG 59.278 55.000 9.55 0.00 0.00 4.26
759 1147 1.671850 CGACAGGGAAAAAGCTAGCGA 60.672 52.381 9.55 0.00 0.00 4.93
760 1148 2.003301 GACAGGGAAAAAGCTAGCGAG 58.997 52.381 9.55 0.00 0.00 5.03
875 1275 6.212388 ACTGTAAATCTATCTATCTGGGCCTG 59.788 42.308 4.53 4.06 0.00 4.85
909 1312 4.870426 GGAATTTGAAGTCGACATGAGCTA 59.130 41.667 19.50 0.00 0.00 3.32
910 1313 5.006165 GGAATTTGAAGTCGACATGAGCTAG 59.994 44.000 19.50 0.00 0.00 3.42
911 1314 3.510388 TTGAAGTCGACATGAGCTAGG 57.490 47.619 19.50 0.00 0.00 3.02
912 1315 1.751351 TGAAGTCGACATGAGCTAGGG 59.249 52.381 19.50 0.00 0.00 3.53
913 1316 1.751924 GAAGTCGACATGAGCTAGGGT 59.248 52.381 19.50 0.00 0.00 4.34
914 1317 1.107114 AGTCGACATGAGCTAGGGTG 58.893 55.000 19.50 0.00 0.00 4.61
917 1320 1.064685 TCGACATGAGCTAGGGTGAGA 60.065 52.381 0.00 0.00 0.00 3.27
962 1365 1.142778 GCAAGATCGACGGCTCTCAC 61.143 60.000 0.00 0.00 0.00 3.51
963 1366 0.526524 CAAGATCGACGGCTCTCACC 60.527 60.000 0.00 0.00 0.00 4.02
964 1367 0.965866 AAGATCGACGGCTCTCACCA 60.966 55.000 0.00 0.00 0.00 4.17
965 1368 0.753479 AGATCGACGGCTCTCACCAT 60.753 55.000 0.00 0.00 0.00 3.55
966 1369 0.318275 GATCGACGGCTCTCACCATC 60.318 60.000 0.00 0.00 0.00 3.51
967 1370 1.037579 ATCGACGGCTCTCACCATCA 61.038 55.000 0.00 0.00 0.00 3.07
983 1386 3.314331 CACCACTCTCCCCGTGCT 61.314 66.667 0.00 0.00 0.00 4.40
998 1401 1.816183 CGTGCTAGGACTAGGAGGGAG 60.816 61.905 12.91 0.00 36.28 4.30
1027 1430 2.686835 ACCTGCTGCTCCTCCTCC 60.687 66.667 0.00 0.00 0.00 4.30
1028 1431 2.365370 CCTGCTGCTCCTCCTCCT 60.365 66.667 0.00 0.00 0.00 3.69
1029 1432 2.733669 CCTGCTGCTCCTCCTCCTG 61.734 68.421 0.00 0.00 0.00 3.86
1452 1873 0.975887 TCCCCAAAAAGCTGCATTCC 59.024 50.000 1.02 0.00 0.00 3.01
1500 1921 2.419739 GCTCCAGGTCCGTCTCTCC 61.420 68.421 0.00 0.00 0.00 3.71
1782 2209 0.605319 CCTGGGTTTCGCTGCTGTTA 60.605 55.000 0.00 0.00 0.00 2.41
1785 2212 0.955919 GGGTTTCGCTGCTGTTAGCT 60.956 55.000 0.00 0.00 42.97 3.32
1816 2243 1.683790 CGCCGTCTTCACATTCGTCC 61.684 60.000 0.00 0.00 0.00 4.79
1891 2318 4.838152 CCATGCACCCGTCCTCCG 62.838 72.222 0.00 0.00 0.00 4.63
1892 2319 3.770040 CATGCACCCGTCCTCCGA 61.770 66.667 0.00 0.00 39.56 4.55
2084 2511 2.026879 GCCGGCAAAGCGAACAAA 59.973 55.556 24.80 0.00 0.00 2.83
2319 2751 8.736244 TGATGACAAATTGAGGCATGATATATG 58.264 33.333 0.00 0.00 0.00 1.78
2324 2756 9.970553 ACAAATTGAGGCATGATATATGAGTAT 57.029 29.630 0.00 0.00 0.00 2.12
2327 2759 9.833917 AATTGAGGCATGATATATGAGTATCTG 57.166 33.333 0.00 0.00 34.92 2.90
2328 2760 7.968014 TGAGGCATGATATATGAGTATCTGT 57.032 36.000 0.00 0.00 34.92 3.41
2329 2761 9.479549 TTGAGGCATGATATATGAGTATCTGTA 57.520 33.333 0.00 0.00 34.92 2.74
2430 2863 2.731976 CACCGAGTTCTTTAGTGACTGC 59.268 50.000 0.00 0.00 0.00 4.40
2431 2864 2.628657 ACCGAGTTCTTTAGTGACTGCT 59.371 45.455 0.00 0.00 0.00 4.24
2432 2865 3.246619 CCGAGTTCTTTAGTGACTGCTC 58.753 50.000 0.00 0.00 0.00 4.26
2470 2906 5.392658 GCTTGTGCTTTGCAGAGTTGCTA 62.393 47.826 6.08 0.00 42.63 3.49
2624 3060 1.047596 TTGCAGTTTGGTGGCATGGT 61.048 50.000 0.00 0.00 37.39 3.55
2833 3270 7.143340 CAGGGTTTGCTTTACTTTTAGGTTAC 58.857 38.462 0.00 0.00 0.00 2.50
2885 3322 4.418392 GCTGACCAGTTGCATATTGAAAG 58.582 43.478 0.00 0.00 0.00 2.62
2955 3392 9.651718 GTAATACATTCATTAGTTAGCAACAGC 57.348 33.333 0.00 0.00 0.00 4.40
2956 3393 8.511604 AATACATTCATTAGTTAGCAACAGCT 57.488 30.769 0.00 0.00 42.33 4.24
2957 3394 6.824305 ACATTCATTAGTTAGCAACAGCTT 57.176 33.333 0.00 0.00 39.77 3.74
2958 3395 7.219484 ACATTCATTAGTTAGCAACAGCTTT 57.781 32.000 0.00 0.00 39.77 3.51
2959 3396 7.661040 ACATTCATTAGTTAGCAACAGCTTTT 58.339 30.769 0.00 0.00 39.77 2.27
2960 3397 7.809806 ACATTCATTAGTTAGCAACAGCTTTTC 59.190 33.333 0.00 0.00 39.77 2.29
2961 3398 6.875948 TCATTAGTTAGCAACAGCTTTTCA 57.124 33.333 0.00 0.00 39.77 2.69
2962 3399 7.270757 TCATTAGTTAGCAACAGCTTTTCAA 57.729 32.000 0.00 0.00 39.77 2.69
2963 3400 7.711846 TCATTAGTTAGCAACAGCTTTTCAAA 58.288 30.769 0.00 0.00 39.77 2.69
2964 3401 7.647715 TCATTAGTTAGCAACAGCTTTTCAAAC 59.352 33.333 0.00 0.00 39.77 2.93
2965 3402 4.351192 AGTTAGCAACAGCTTTTCAAACG 58.649 39.130 0.00 0.00 39.77 3.60
2966 3403 1.559831 AGCAACAGCTTTTCAAACGC 58.440 45.000 0.00 0.00 34.18 4.84
2967 3404 1.135141 AGCAACAGCTTTTCAAACGCA 60.135 42.857 0.93 0.00 34.18 5.24
2968 3405 1.006079 GCAACAGCTTTTCAAACGCAC 60.006 47.619 0.93 0.00 0.00 5.34
2969 3406 2.529151 CAACAGCTTTTCAAACGCACT 58.471 42.857 0.93 0.00 0.00 4.40
2970 3407 2.923020 CAACAGCTTTTCAAACGCACTT 59.077 40.909 0.93 0.00 0.00 3.16
2971 3408 2.797491 ACAGCTTTTCAAACGCACTTC 58.203 42.857 0.93 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.290705 CCACCTCGTTTAATCACCCCTT 60.291 50.000 0.00 0.00 0.00 3.95
70 71 2.342279 TGCGTGGGTGCACTACTC 59.658 61.111 17.98 11.69 40.62 2.59
81 82 1.623081 AATACTGTTCGCGTGCGTGG 61.623 55.000 14.47 5.70 40.74 4.94
88 89 1.396996 CCTTCCCAAATACTGTTCGCG 59.603 52.381 0.00 0.00 0.00 5.87
92 93 1.615919 CCGGCCTTCCCAAATACTGTT 60.616 52.381 0.00 0.00 0.00 3.16
198 567 5.107109 TCAAATTTGTCCAATCACAGACG 57.893 39.130 17.47 0.00 35.71 4.18
223 592 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
224 593 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
225 594 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
226 595 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
227 596 7.301054 AGTTCATTCTGTGATTTGATTTCGTC 58.699 34.615 0.00 0.00 36.54 4.20
228 597 7.206981 AGTTCATTCTGTGATTTGATTTCGT 57.793 32.000 0.00 0.00 36.54 3.85
229 598 9.430838 GATAGTTCATTCTGTGATTTGATTTCG 57.569 33.333 0.00 0.00 36.54 3.46
230 599 9.727627 GGATAGTTCATTCTGTGATTTGATTTC 57.272 33.333 0.00 0.00 36.54 2.17
231 600 8.400947 CGGATAGTTCATTCTGTGATTTGATTT 58.599 33.333 0.00 0.00 36.54 2.17
232 601 7.554118 ACGGATAGTTCATTCTGTGATTTGATT 59.446 33.333 0.00 0.00 36.54 2.57
233 602 7.050377 ACGGATAGTTCATTCTGTGATTTGAT 58.950 34.615 0.00 0.00 36.54 2.57
234 603 6.406370 ACGGATAGTTCATTCTGTGATTTGA 58.594 36.000 0.00 0.00 36.54 2.69
235 604 6.668541 ACGGATAGTTCATTCTGTGATTTG 57.331 37.500 0.00 0.00 36.54 2.32
236 605 8.964476 AATACGGATAGTTCATTCTGTGATTT 57.036 30.769 0.00 0.00 36.54 2.17
237 606 8.964476 AAATACGGATAGTTCATTCTGTGATT 57.036 30.769 0.00 0.00 36.54 2.57
238 607 8.204160 TGAAATACGGATAGTTCATTCTGTGAT 58.796 33.333 0.00 0.00 39.74 3.06
239 608 7.491372 GTGAAATACGGATAGTTCATTCTGTGA 59.509 37.037 0.00 0.00 44.65 3.58
240 609 7.515215 CGTGAAATACGGATAGTTCATTCTGTG 60.515 40.741 0.00 0.00 44.65 3.66
241 610 6.475727 CGTGAAATACGGATAGTTCATTCTGT 59.524 38.462 0.00 0.00 44.65 3.41
242 611 6.867388 CGTGAAATACGGATAGTTCATTCTG 58.133 40.000 0.00 0.00 44.65 3.02
257 626 0.739813 AGGTCAGCCGCGTGAAATAC 60.740 55.000 4.92 0.00 40.50 1.89
258 627 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
259 628 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
260 629 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
261 630 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
262 631 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
263 632 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
264 633 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
265 634 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
266 635 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
267 636 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
268 637 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
269 638 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
270 639 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
271 640 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
272 641 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
273 642 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
274 643 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
275 644 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
276 645 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
277 646 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
278 647 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
279 648 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
280 649 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
281 650 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
282 651 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
283 652 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
284 653 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
292 661 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
293 662 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
294 663 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
295 664 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
296 665 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
297 666 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
298 667 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
299 668 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
300 669 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
301 670 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
302 671 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
303 672 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
304 673 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
306 675 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
307 676 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
308 677 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
309 678 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
310 679 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
311 680 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
312 681 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
313 682 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
315 684 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
316 685 1.328680 CATATCTGTGAGGCGTTGCAC 59.671 52.381 0.00 0.00 35.63 4.57
317 686 1.655484 CATATCTGTGAGGCGTTGCA 58.345 50.000 0.00 0.00 0.00 4.08
318 687 0.305922 GCATATCTGTGAGGCGTTGC 59.694 55.000 0.00 0.00 0.00 4.17
319 688 0.578683 CGCATATCTGTGAGGCGTTG 59.421 55.000 0.00 0.00 42.51 4.10
320 689 2.977700 CGCATATCTGTGAGGCGTT 58.022 52.632 0.00 0.00 42.51 4.84
321 690 4.738198 CGCATATCTGTGAGGCGT 57.262 55.556 0.00 0.00 42.51 5.68
323 692 1.269778 TGTAGCGCATATCTGTGAGGC 60.270 52.381 11.47 0.00 34.71 4.70
324 693 2.035193 AGTGTAGCGCATATCTGTGAGG 59.965 50.000 11.47 0.00 34.71 3.86
325 694 3.048501 CAGTGTAGCGCATATCTGTGAG 58.951 50.000 11.47 0.00 34.71 3.51
326 695 2.799562 GCAGTGTAGCGCATATCTGTGA 60.800 50.000 11.47 0.00 34.71 3.58
327 696 1.524355 GCAGTGTAGCGCATATCTGTG 59.476 52.381 11.47 0.00 35.92 3.66
328 697 1.539065 GGCAGTGTAGCGCATATCTGT 60.539 52.381 11.47 0.00 34.64 3.41
329 698 1.143305 GGCAGTGTAGCGCATATCTG 58.857 55.000 11.47 13.72 34.64 2.90
330 699 0.752658 TGGCAGTGTAGCGCATATCT 59.247 50.000 11.47 0.00 34.64 1.98
331 700 1.143305 CTGGCAGTGTAGCGCATATC 58.857 55.000 11.47 0.00 34.64 1.63
332 701 0.882042 GCTGGCAGTGTAGCGCATAT 60.882 55.000 17.16 0.00 34.64 1.78
333 702 1.521457 GCTGGCAGTGTAGCGCATA 60.521 57.895 17.16 0.00 34.64 3.14
334 703 2.821366 GCTGGCAGTGTAGCGCAT 60.821 61.111 17.16 0.00 34.64 4.73
338 707 3.181967 CGACGCTGGCAGTGTAGC 61.182 66.667 31.65 19.73 39.36 3.58
339 708 3.181967 GCGACGCTGGCAGTGTAG 61.182 66.667 31.65 30.41 39.36 2.74
340 709 3.295304 ATGCGACGCTGGCAGTGTA 62.295 57.895 31.65 18.21 44.71 2.90
341 710 4.687215 ATGCGACGCTGGCAGTGT 62.687 61.111 32.01 32.01 44.71 3.55
342 711 3.857854 GATGCGACGCTGGCAGTG 61.858 66.667 25.57 25.57 44.71 3.66
348 717 3.842126 CACACGGATGCGACGCTG 61.842 66.667 22.08 12.79 34.00 5.18
349 718 3.356639 ATCACACGGATGCGACGCT 62.357 57.895 22.08 6.44 34.06 5.07
350 719 2.860628 GATCACACGGATGCGACGC 61.861 63.158 15.49 14.19 36.00 5.19
351 720 1.474648 CTGATCACACGGATGCGACG 61.475 60.000 15.49 6.43 36.00 5.12
352 721 0.179137 TCTGATCACACGGATGCGAC 60.179 55.000 15.49 0.00 36.00 5.19
353 722 0.530288 TTCTGATCACACGGATGCGA 59.470 50.000 15.49 0.00 36.00 5.10
354 723 1.358877 TTTCTGATCACACGGATGCG 58.641 50.000 4.58 4.58 36.00 4.73
355 724 4.361451 AATTTTCTGATCACACGGATGC 57.639 40.909 0.00 0.00 36.00 3.91
356 725 6.668541 AGTAATTTTCTGATCACACGGATG 57.331 37.500 0.00 0.00 36.00 3.51
357 726 8.041323 ACTTAGTAATTTTCTGATCACACGGAT 58.959 33.333 0.00 0.00 39.53 4.18
358 727 7.383687 ACTTAGTAATTTTCTGATCACACGGA 58.616 34.615 0.00 0.00 0.00 4.69
359 728 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
360 729 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
361 730 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
362 731 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
363 732 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
364 733 9.208022 CACACTGACTTAGTAATTTTCTGATCA 57.792 33.333 0.00 0.00 37.60 2.92
365 734 8.171840 GCACACTGACTTAGTAATTTTCTGATC 58.828 37.037 0.00 0.00 37.60 2.92
366 735 7.661437 TGCACACTGACTTAGTAATTTTCTGAT 59.339 33.333 0.00 0.00 37.60 2.90
367 736 6.989759 TGCACACTGACTTAGTAATTTTCTGA 59.010 34.615 0.00 0.00 37.60 3.27
368 737 7.189693 TGCACACTGACTTAGTAATTTTCTG 57.810 36.000 0.00 0.00 37.60 3.02
369 738 6.073003 GCTGCACACTGACTTAGTAATTTTCT 60.073 38.462 0.00 0.00 37.60 2.52
370 739 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
371 740 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
372 741 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
373 742 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
374 743 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
375 744 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
376 745 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
377 746 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
378 747 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
379 748 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
380 749 2.099652 TAGGCGCTGCACACTGACTT 62.100 55.000 7.64 0.00 0.00 3.01
381 750 2.099652 TTAGGCGCTGCACACTGACT 62.100 55.000 7.64 0.00 0.00 3.41
382 751 1.227999 TTTAGGCGCTGCACACTGAC 61.228 55.000 7.64 0.00 0.00 3.51
383 752 0.533978 TTTTAGGCGCTGCACACTGA 60.534 50.000 7.64 0.00 0.00 3.41
384 753 0.110056 CTTTTAGGCGCTGCACACTG 60.110 55.000 7.64 0.00 0.00 3.66
385 754 1.856265 GCTTTTAGGCGCTGCACACT 61.856 55.000 7.64 0.00 0.00 3.55
386 755 1.442688 GCTTTTAGGCGCTGCACAC 60.443 57.895 7.64 0.00 0.00 3.82
387 756 0.321210 TAGCTTTTAGGCGCTGCACA 60.321 50.000 7.64 0.00 37.05 4.57
388 757 0.375106 CTAGCTTTTAGGCGCTGCAC 59.625 55.000 7.64 0.00 37.05 4.57
389 758 0.744414 CCTAGCTTTTAGGCGCTGCA 60.744 55.000 7.64 0.00 37.05 4.41
390 759 2.017752 CCTAGCTTTTAGGCGCTGC 58.982 57.895 7.64 2.66 37.05 5.25
403 772 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
404 773 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
405 774 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
406 775 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
414 783 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
415 784 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
416 785 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
431 800 2.187946 CAACGCCTGGGAGCTAGG 59.812 66.667 0.00 0.00 38.39 3.02
432 801 2.512515 GCAACGCCTGGGAGCTAG 60.513 66.667 0.00 0.00 0.00 3.42
433 802 3.318384 TGCAACGCCTGGGAGCTA 61.318 61.111 0.00 0.00 0.00 3.32
435 804 3.605749 TAGTGCAACGCCTGGGAGC 62.606 63.158 0.00 0.00 45.86 4.70
436 805 1.448540 CTAGTGCAACGCCTGGGAG 60.449 63.158 0.00 0.00 45.86 4.30
437 806 2.214216 ACTAGTGCAACGCCTGGGA 61.214 57.895 0.00 0.00 45.86 4.37
438 807 2.034879 CACTAGTGCAACGCCTGGG 61.035 63.158 10.54 0.00 45.86 4.45
439 808 3.566261 CACTAGTGCAACGCCTGG 58.434 61.111 10.54 0.00 45.86 4.45
449 818 1.880340 GCTAGGCGCTGCACTAGTG 60.880 63.158 18.93 18.93 39.07 2.74
450 819 2.496817 GCTAGGCGCTGCACTAGT 59.503 61.111 21.78 0.00 39.07 2.57
459 828 2.105930 CACCTGAGAGCTAGGCGC 59.894 66.667 0.00 0.00 38.96 6.53
460 829 2.105930 GCACCTGAGAGCTAGGCG 59.894 66.667 0.60 0.00 38.96 5.52
461 830 1.143620 CAGCACCTGAGAGCTAGGC 59.856 63.158 0.60 0.00 37.90 3.93
462 831 1.143620 GCAGCACCTGAGAGCTAGG 59.856 63.158 0.00 0.00 37.90 3.02
463 832 0.459934 GTGCAGCACCTGAGAGCTAG 60.460 60.000 15.27 0.00 37.90 3.42
464 833 0.902048 AGTGCAGCACCTGAGAGCTA 60.902 55.000 22.41 0.00 37.90 3.32
465 834 0.902048 TAGTGCAGCACCTGAGAGCT 60.902 55.000 22.41 3.33 40.96 4.09
466 835 0.459934 CTAGTGCAGCACCTGAGAGC 60.460 60.000 22.41 0.00 34.49 4.09
467 836 0.894141 ACTAGTGCAGCACCTGAGAG 59.106 55.000 22.41 13.43 34.49 3.20
468 837 0.605083 CACTAGTGCAGCACCTGAGA 59.395 55.000 22.41 1.93 34.49 3.27
469 838 3.134401 CACTAGTGCAGCACCTGAG 57.866 57.895 22.41 18.14 34.49 3.35
489 858 4.079850 CTCTCAGGCGCTGCACCT 62.080 66.667 7.64 2.74 38.35 4.00
491 860 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
492 861 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
493 862 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
494 863 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
518 887 1.376609 CTATTTCACACGGCTGCCCC 61.377 60.000 14.12 0.00 0.00 5.80
519 888 0.676782 ACTATTTCACACGGCTGCCC 60.677 55.000 14.12 0.00 0.00 5.36
520 889 1.165270 AACTATTTCACACGGCTGCC 58.835 50.000 9.11 9.11 0.00 4.85
521 890 2.225491 TGAAACTATTTCACACGGCTGC 59.775 45.455 0.00 0.00 44.21 5.25
530 899 5.361427 TGAACTGTCCGTGAAACTATTTCA 58.639 37.500 0.00 0.00 46.68 2.69
531 900 5.917541 TGAACTGTCCGTGAAACTATTTC 57.082 39.130 0.00 0.00 40.08 2.17
532 901 6.710744 AGAATGAACTGTCCGTGAAACTATTT 59.289 34.615 0.00 0.00 31.75 1.40
533 902 6.147821 CAGAATGAACTGTCCGTGAAACTATT 59.852 38.462 0.00 0.00 39.69 1.73
534 903 5.639506 CAGAATGAACTGTCCGTGAAACTAT 59.360 40.000 0.00 0.00 39.69 2.12
535 904 4.988540 CAGAATGAACTGTCCGTGAAACTA 59.011 41.667 0.00 0.00 39.69 2.24
536 905 3.809832 CAGAATGAACTGTCCGTGAAACT 59.190 43.478 0.00 0.00 39.69 2.66
537 906 3.560068 ACAGAATGAACTGTCCGTGAAAC 59.440 43.478 0.00 0.00 46.36 2.78
538 907 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
539 908 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
547 916 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
548 917 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
549 918 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
550 919 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
551 920 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
553 922 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
554 923 7.710907 CCCTATAGACGAAATCAAATCACAGAA 59.289 37.037 0.00 0.00 0.00 3.02
555 924 7.210174 CCCTATAGACGAAATCAAATCACAGA 58.790 38.462 0.00 0.00 0.00 3.41
556 925 6.073548 GCCCTATAGACGAAATCAAATCACAG 60.074 42.308 0.00 0.00 0.00 3.66
557 926 5.758296 GCCCTATAGACGAAATCAAATCACA 59.242 40.000 0.00 0.00 0.00 3.58
558 927 5.992217 AGCCCTATAGACGAAATCAAATCAC 59.008 40.000 0.00 0.00 0.00 3.06
559 928 6.174720 AGCCCTATAGACGAAATCAAATCA 57.825 37.500 0.00 0.00 0.00 2.57
560 929 6.706270 TCAAGCCCTATAGACGAAATCAAATC 59.294 38.462 0.00 0.00 0.00 2.17
561 930 6.591935 TCAAGCCCTATAGACGAAATCAAAT 58.408 36.000 0.00 0.00 0.00 2.32
562 931 5.984725 TCAAGCCCTATAGACGAAATCAAA 58.015 37.500 0.00 0.00 0.00 2.69
563 932 5.362717 TCTCAAGCCCTATAGACGAAATCAA 59.637 40.000 0.00 0.00 0.00 2.57
564 933 4.893524 TCTCAAGCCCTATAGACGAAATCA 59.106 41.667 0.00 0.00 0.00 2.57
565 934 5.455056 TCTCAAGCCCTATAGACGAAATC 57.545 43.478 0.00 0.00 0.00 2.17
566 935 4.262249 GCTCTCAAGCCCTATAGACGAAAT 60.262 45.833 0.00 0.00 43.10 2.17
567 936 3.068307 GCTCTCAAGCCCTATAGACGAAA 59.932 47.826 0.00 0.00 43.10 3.46
568 937 2.623889 GCTCTCAAGCCCTATAGACGAA 59.376 50.000 0.00 0.00 43.10 3.85
569 938 2.231529 GCTCTCAAGCCCTATAGACGA 58.768 52.381 0.00 0.00 43.10 4.20
570 939 2.715737 GCTCTCAAGCCCTATAGACG 57.284 55.000 0.00 0.00 43.10 4.18
585 954 2.623431 AGGGGAGGAGAGGGCTCT 60.623 66.667 0.00 0.00 43.78 4.09
586 955 2.445654 CAGGGGAGGAGAGGGCTC 60.446 72.222 0.00 0.00 40.54 4.70
587 956 4.814041 GCAGGGGAGGAGAGGGCT 62.814 72.222 0.00 0.00 0.00 5.19
589 958 2.767496 CTGCAGGGGAGGAGAGGG 60.767 72.222 5.57 0.00 0.00 4.30
705 1078 1.212688 CCCTCAGCTCTCTCTCTCTCA 59.787 57.143 0.00 0.00 0.00 3.27
763 1151 4.724602 TTTGCTCGCTCGCTCGCT 62.725 61.111 0.00 0.00 0.00 4.93
764 1152 4.491328 GTTTGCTCGCTCGCTCGC 62.491 66.667 0.00 0.00 0.00 5.03
765 1153 2.158058 TTTGTTTGCTCGCTCGCTCG 62.158 55.000 0.00 0.00 0.00 5.03
875 1275 1.937191 TCAAATTCCTTGCTTCCCCC 58.063 50.000 0.00 0.00 34.76 5.40
909 1312 0.178921 TGGCTTCTCACTCTCACCCT 60.179 55.000 0.00 0.00 0.00 4.34
910 1313 0.687354 TTGGCTTCTCACTCTCACCC 59.313 55.000 0.00 0.00 0.00 4.61
911 1314 1.943507 GCTTGGCTTCTCACTCTCACC 60.944 57.143 0.00 0.00 0.00 4.02
912 1315 1.270518 TGCTTGGCTTCTCACTCTCAC 60.271 52.381 0.00 0.00 0.00 3.51
913 1316 1.051008 TGCTTGGCTTCTCACTCTCA 58.949 50.000 0.00 0.00 0.00 3.27
914 1317 2.075338 CTTGCTTGGCTTCTCACTCTC 58.925 52.381 0.00 0.00 0.00 3.20
917 1320 0.179009 TGCTTGCTTGGCTTCTCACT 60.179 50.000 0.00 0.00 0.00 3.41
962 1365 1.990060 ACGGGGAGAGTGGTGATGG 60.990 63.158 0.00 0.00 0.00 3.51
963 1366 1.219124 CACGGGGAGAGTGGTGATG 59.781 63.158 0.00 0.00 36.06 3.07
964 1367 2.660064 GCACGGGGAGAGTGGTGAT 61.660 63.158 0.00 0.00 39.80 3.06
965 1368 3.311110 GCACGGGGAGAGTGGTGA 61.311 66.667 0.00 0.00 39.80 4.02
966 1369 3.314331 AGCACGGGGAGAGTGGTG 61.314 66.667 0.06 0.00 46.81 4.17
983 1386 1.429687 GCATCCTCCCTCCTAGTCCTA 59.570 57.143 0.00 0.00 0.00 2.94
1067 1470 1.985116 GCGAAGGAGGAGGACTGGT 60.985 63.158 0.00 0.00 0.00 4.00
1431 1852 2.765699 GGAATGCAGCTTTTTGGGGATA 59.234 45.455 0.00 0.00 0.00 2.59
1452 1873 2.165641 TGTGGCGTTGTAGTCTATCCAG 59.834 50.000 0.00 0.00 0.00 3.86
1605 2032 2.046892 CAGTTGGCGTGGGAGGAG 60.047 66.667 0.00 0.00 0.00 3.69
1816 2243 1.133407 GGAGTACCAGACGAAGAGCAG 59.867 57.143 0.00 0.00 35.97 4.24
1891 2318 4.797693 TCTTCTCGTAGATGATGTCGTC 57.202 45.455 0.00 0.00 33.89 4.20
1892 2319 5.066634 ACAATCTTCTCGTAGATGATGTCGT 59.933 40.000 11.33 8.24 38.59 4.34
1900 2327 3.449018 ACCAGCACAATCTTCTCGTAGAT 59.551 43.478 0.00 0.00 36.44 1.98
2319 2751 3.703420 ACAAACCGCGATACAGATACTC 58.297 45.455 8.23 0.00 0.00 2.59
2324 2756 1.001068 TGGAACAAACCGCGATACAGA 59.999 47.619 8.23 0.00 31.92 3.41
2325 2757 1.434555 TGGAACAAACCGCGATACAG 58.565 50.000 8.23 0.00 31.92 2.74
2326 2758 3.608760 TGGAACAAACCGCGATACA 57.391 47.368 8.23 0.00 31.92 2.29
2371 2804 0.665298 GGATTGAGCAGAAATCGGGC 59.335 55.000 0.00 0.00 35.31 6.13
2430 2863 2.843701 AGCGCATAAATTGAGGAGGAG 58.156 47.619 11.47 0.00 0.00 3.69
2431 2864 2.945008 CAAGCGCATAAATTGAGGAGGA 59.055 45.455 11.47 0.00 0.00 3.71
2432 2865 2.684881 ACAAGCGCATAAATTGAGGAGG 59.315 45.455 11.47 0.00 0.00 4.30
2470 2906 0.613012 GGGGAGCAATCACCAAAGCT 60.613 55.000 0.00 0.00 40.60 3.74
2624 3060 3.020274 TGTTAAGCAACTTGGCACAGAA 58.980 40.909 0.00 0.00 33.81 3.02
2833 3270 3.118112 AGCATCAGGTTCCAGGATACAAG 60.118 47.826 0.00 0.00 41.41 3.16
2878 3315 7.730364 ACTTGTCGTCTTTACATCTTTCAAT 57.270 32.000 0.00 0.00 0.00 2.57
2948 3385 1.006079 GTGCGTTTGAAAAGCTGTTGC 60.006 47.619 16.15 0.00 40.05 4.17
2949 3386 2.529151 AGTGCGTTTGAAAAGCTGTTG 58.471 42.857 16.15 0.00 0.00 3.33
2950 3387 2.939460 AGTGCGTTTGAAAAGCTGTT 57.061 40.000 16.15 0.00 0.00 3.16
2951 3388 2.797491 GAAGTGCGTTTGAAAAGCTGT 58.203 42.857 16.15 1.60 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.