>input_sequence_64121
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------------------------------------------ATGCCGCTCCACCTGCTGCTCCTCCTCCTGCTGCTCCT
GCCGTCCGCCGCCGTGGCCGGCAAGGCCCACCAGTCCTCCTCCTTCGCCCTCGATTTCTTCCCTGGCGACGGCGCCATCG
CGCAGCTCGCTCTCACCGGCGCCAACGCCACCTCCGCCGGCGACATCTCCATGCGCTCCCCGCGGGCCCGGGTACAGTAC
CACAAACCCATCCACTTGGCCCCCGCCGCCGCCGGCTTCTCAACCTACTTCTCCTTCTCTCTCCACCCTAGCCCCAAATC
TCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCC------------CTCGCCCGCCGTTAACGCCCTCGCCG
------TCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGCCGGTGAAACGGCCGCCCAGACC
GCCCCCCGCGGTATCCCCAAAAAGCTGCATTCCTGGATAGACTACAACGCCACATCCGCCACGCTCCAGGTCCGTCTCTC
CGCCTCGCGCCTCCCCAAGCCGCCGCGCGCGCTGCTCTCCCACCCGCTCCATCTCCACTCCGCCCTCCTCCTCC------
TCCGCAGCAAGCCCATGCTCGCCGGATTCGCCTCCTCCCACGCCAACTGCAGCCTCTTCAGCTGGGCCTTCAGGGCCAAC
CACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCACCACGCCGCCGCCAGACCGCCT
CCCCCGCGCTCCCCCGGGCAACCGCCACCCCTGGGTTTCGCTGCTGTTAGCTGCCGCGTGCGGCGCCGTCTTCACATTCG
TCCTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGCCCGGTCGCGCCGGTGGAGTACCCCATGCACCCGTCCTCCGAC
GACATCATCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCACCGCAGCTGCTCACAAGTAG--
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>chr2D_1_TraesCS2D01G267500
GTGTGGCGCACTTTTCTTTCTTTTGAGGAGCTAAGGGGTGATTAAACGAGGTGGTGACCACCGAAAAAAGGAGTAGTGCA
CCCACGCACGCGAACAGTATTTG--------GGAAGGCCGGATGCGTGTATTTTACTCCCGGTGGAGGTGGAGTCGTAAC
TAGCGCTGGAATTGCTGCCACTGACTGACTCTTG----------------------------------------------
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--------------------------------------------------------------------------TTGTGT
TTCTTGCGTCTGTGATTGGACAAATTTGATTTATAGACGAAATCAAATCACAGAATGAACTATCCGTATTTCACGCGGCT
GACCTTTTTGTGTGACGCCCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCACAGATATGCGCTACACTGCCAGC
GTCGCATCCGTGTGATCAGAAAATTACTAAGTCAGTGTGCAGCGCCTAAAAGCTAGGCGCCACACTATACAGTGTAGCGC
CTAGCTCCCAGGCGTTGCACTAGTGCAGCGCCTAGCTCTCAGGTGCTGCACTAGTGCAGGTGCAGCGCCTGAGAGCTAGG
CGCCACGGGGCAGCCGTGTGAAATAGTTTCACGGACAGTTCATTCTGTGATTTGATTTCGTCTATAGGGCTTGAGAGCCC
TCTCCTCC-CCTGCAGCTTAATTAATGACACGCTGCTGCTTCTGCACT---AGTGGAACACGCGCCCCACACCCCTCCCC
ATTAATGAATGAATGAATGGGTGAGCCTCCCGAGTGAT---------------GAGAGAGAGAGAGCTGAGGGGAAAGCA
ACGGGACGACAGGGAAAAAGCTAGCGAGCGAGCGAGCGAGCGAGCAAACAAAAGCGACCAGCTAGCTCCGGCAGCA--CC
CACTACGCCCCCTTTCGCCAATCTACTCCACTT----------CACTCCACTGTAAATCTATCTATCTGGGCCTGGGGGA
AGCAAGGAATTTGAAGTCGACATGAG---CTAGGGTGAGAGTGAGAAGCCAAGCAAGCAGGCGACGCAAGATCGACGGCT
CTCACCATCACCACTCTCCCCGTGCTAGGACTAGGAGGGAGGATGCCGCTCCACCTGCTGCTCCTCCTCCTGCTGCTCCT
GCCGTCCGCCGCCGTGGCCGGCAAGGCCCACCAGTCCTCCTCCTTCGCCCTCGATTTCTTCCCTGGCGACGGCGCCATCG
CGCAGCTCGCTCTCACCGGCGCCAACGCCACCTCCGCCGGCGACATCTCCATGCGCTCCCCGCGGGCCCGGGTACAGTAC
CACAAACCCATCCACTTGGCCCCCGCCGCCGCCGGCTTCTCAACCTACTTCTCCTTCTCTCTCCACCCTAGCCCCAAATC
TCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCC------------CTCGCCCGCCGTTAACGCCCTCGCCG
------TCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGCCGGTGAAACGGCCGCCCAGACC
GCCCCCCGCGGTATCCCCAAAAAGCTGCATTCCTGGATAGACTACAACGCCACATCCGCCACGCTCCAGGTCCGTCTCTC
CGCCTCGCGCCTCCCCAAGCCGCCGCGCGCGCTGCTCTCCCACCCGCTCCATCTCCACTCCGCCCTCCTCCTCC------
TCCGCAGCAAGCCCATGCTCGCCGGATTCGCCTCCTCCCACGCCAACTGCAGCCTCTTCAGCTGGGCCTTCAGGGCCAAC
CACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCACCACGCCGCCGCCAGACCGCCT
CCCCCGCGCTCCCCCGGGCAACCGCCACCCCTGGGTTTCGCTGCTGTTAGCTGCCGCGTGCGGCGCCGTCTTCACATTCG
TCCTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGCCCGGTCGCGCCGGTGGAGTACCCCATGCACCCGTCCTCCGAC
GACATCATCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCACCGCAGCTGCTCACAAGTAGCC
GCTATCCTCTCCTCTAGATTCTACTGCAAGTGTGCTCCTGTAACTGTAAGTAGGAAATTGTTGCTAGTAAGCGCGGTGGA
AAATGCAGATTTTGCCGGCAAAGCGAACAAAGCAAATTCTGCACTTCCCACCGGGATTAGGATTCGATTGCTCTTTCTAA
ATTGTAACTTGTCAATTGTCATGTCATCCACCACTGCTACCACTTCTTCTTTGTATGCTTATTAGT-CATGT----CCTA
GTACTATTCAAGAGCTCATCTTATCATCTCTAATGGACAGAGTAACATGATGTTTGTTTTTTCGGCGAATGCACATAATA
TAGCTGATGACAAATTGAGGCATGATATATGAGTATCTGTATCGCGGTTTGTTCCAAAA-TATAGGTAAAATTTCACAAC
TCCGCCCGATTTCTGCTCAATCCCCAGATACTGAATGCATCCACCGAGTTCTTTAGTGACTGCTCCTCC---TCAATTTA
TGCGCTTGTGCTTTGCAGAGTTGCTAGCTTTGGTGATTGCTCCCCCTCAATAATGCACCTGTGCTTTTCAAACGCACTTC
ACCACTGCTGTTTAATTTACTCCTGCATTAGTAGATTCGGAGTTTCTTCTTCGGCAGCTTCAACTTGCGGGAGACTCTTG
TTGCAGTTTGGTGGCATGGTTCTGTGCCAAGTTGC-TTAACAAGATGCTGCTAGGTGCAGTTCAGTTGGCCAAAGCCACT
TTGCATTAATATTGGAGATGTGCACGAGAGTGCTGAAATCATTATGGGAGATCTAGGTGCATGCTATATGCCCATTGCTA
CTTTCAGTTAGGAACCACTAGCTGTATTATGGCATCCAGGATTCCAGGGTTTGCTTTACTTTTAGGTTACTTGTATCCTG
GAACCTGATGCTGTTTTTGGCTGACCAGTTGCATATTGAAAGATGTAAAGACGACAAGTTATTATGAAATATACGATCAT
TTTTAGTAATACATTCATTAGTTAGCAACAGCTTTTCAAACGCACTTC
>chr2B_1
GTGTGGTGCACTTTTCTTTCTTTTGAGGAGCT-AGGGGTGATTAAACGAGGTGGTGACCACCGAAAAAAG----AGTGCA
CGCACGCATGCGTACAGTATTTATTTTTTTTCGAAGGCCGGATGCGTGTATTTTACTCCCGGTGGAGGTCGAGTCGTAAC
TAGCGCTGAAATTGCTGCCACTGAGAGGGTGTTTGGATACTCTCTAGTCATGTGACTAGTAGTAGTCAGACTAGAAGTTT
TTAGTCAGACCCTGTTTGGAAGGTGACTACTACTAGTCAACATTAAATGTCTCAGTATTAAATGTCCCTTGTGCAACACC
AATTAGAGGAGAGAGAGAGGGGGACTTTAGTCAGTAAAAGTCAGGGGTGTTTGGAGGTTTACTGACTAAAGGTGACTACT
ACTAGTATCTAGTCAGTAAAAGTTGGGGGTGGGGTGACTAGGGACTAAACTAGTTTTAGTCACCCACTAGTCAGGGTGTT
TGGAGGTTTACTGACTAAAGGTGACTACTACGTCTCTAGTCTCTAGTGATCCAAACACCCTCTGAGTGACTTGTTTGTGT
TTCTTGTGTTTGTGCTTTGCCCTTTCCTCT--------------------------------------------------
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------------------------------------------------------------------------------CC
TCTCCTCCTCCTGCAGCTTAATTAATGACAAGCTGCTGCTTCTGCACT---AGTGGAACACGCGCCCCACACCCCTCCGC
ATTAATGAATG----AATGGGTGAGCGTCCCGAGTGAGTGACAAGTGATGAGAGAGAGAGAGAGAGAG--------AGCA
ACGGGACGACAGGGAAAAAGC------------GAGCGAGCGAGCAAACAAAAGCGACCAGCTAGCTCCGGCAGCACCCC
CACTACGCCCCCTCTGGCCAATCTACTCCACTTCACTCCACTCCACTCCACTGTAAATCTATCTGTGTGA------GGGA
AGCAAGGAATTTGAAGTCGACATGAGGAGCT------AGGGTGAGAAGCGAAGCAAGCAGGCGACGCAAGATCGACAGCC
CTCA------CCACTCTCACGGTG------CTAGGAGGGACGATGCCGCTCCACCTGCTGCTCCTCCTC---CTGCTCCT
GCCGTCCGCCGCCGTGGCCGGCAAGGCCCGTCAGTCCTCCTCCTTCGCCCTCGATTTCTTCCCTGGCGACGGCGCCATCG
CGCAGCTCGCTCTCACCGGCGCCAATGCCACCTCCGCCGGCGACATCTCCATGCGCTCCCCGCGCGCCCGGGTACAGTAC
CACAAACCCATTCACTTCGCCCCCGCCGCCGCCGGCTTCTCCACCTACTTCTCCTTCTCTCTCCACCCTATCCCCAAATC
TCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCCCGCGCCCTCGCCCTCACCCGCCGTTAACGCCCTCGCCC
TCGCCATCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGCCGGTGAAACGGCCGCCCAGACC
GCCCCCCGCGGCATCCCCAAAAAGCTGCATTCATGGATAGACTACAACGCCACATCCGCCACGCTTCAGGTCCGTCTCTC
TGCCTCGCGCCTCCCCAAGCCGCCGCACGCGCTGCTCTCCCACCCGCTCCATCTCCACTCCGCCCTCCTCCTCCATCTCC
TCCGCAGCAAGCCCATGCTCGCCGGATTCGCTTCCTCCCACGCCAACTGCAGCCTCTTCAGCTGGGCCTTCAGGGCCAAC
CACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCACCACGCCGCCGCCAGACCGCCT
CCTCCGCGCTCCCCCGGGCAACCGCTACCCCTGGGCTTCGCTGCTGTTGGCGGCAGCGTGCGGCGCCGTCTTCACATTCG
TCGTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGGCCGGTCGCGCCGGTGGAGTACCCCATGCACCCGTCCTCCTCC
GACATCGTCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCACCGCAGCTGCTCACAAGTAGCC
GCTG-----TCCTCTAGATTCTACTGCAAGTGTGCTCCTGTAACTGTAAGTAGGAAATTGTTGCTAGTAAGTGCGGTGGA
AAATGCAGATTTTGCGGGCAAAGCGAACAACGCAAATTCTGCACTTCCCACCGGGATTAGGATTCGATTGCTCTTTCTAA
ATTGTAACTTGTCAGTTGTCATGCCATCCACCACTGCTACCACTTCTTCTTTGTATGCTTATTAGT-CATGCGTGCCCTA
GTACTATTCAAGAGCCCATCCTATCATCTCTAATGGACAGAGTAACATGGTGTTTGTTTTTTCGGCGAATGCACATAATA
TAGCTGATGACAAATTGAGGCATGATATATTAGT-------TCGCAGTTTGTTCAAAAAATATAGCTAAAATTTCACAAC
TCCACCCGATTTCTGCTCAATCCCCAGATACTGAATGCATCCACCGAGTTCTTTAGTGACTG---CTCC---TCAATTTA
TGCGCTTGTGCTTTGCAGAGTTGCTTGCTTTGGTGATTGCTCCCCCTCAATAATGCACTTGTGCTTTCCAAACGCACTTC
ACCACTGCTGTTTAATTTACTCCTGCATTAGTAGATTCGGAGTTTCTTCTTCGGCAGCTTCAACTTGCGGGAGACTCTTG
TTGCAGTTTGGTGGCATGGGTCTGTGCCAAGTTGCTTTAACAATATGCTGCTAGGTGCAATTCAGTTGGCCAAAGCCACT
TTGCATTAATATTGGAGATGTGCACGAGAGTGCTGAAATCATTATGGGAGATCTAGGTGCATGCTATATGCCCATTGCTA
CTTTCAGTTAGGAGCCACTAGCTGTATTATGGCATCCAGGATTCCAGGGTTTGCTTTACTTTTAGGTTAGTTGTATCCTG
GAACCTCATG-TGTTTTTGGCTGACCAGTTGCATCTTGAAAAATGTAAAGACGACAAGTTATTATGAAATATATGATCAT
TTTTTGCAAT--------------------------------------
>chr2A_4
---TGGCACATTTTTCTCTCTTTTGAGGAGCT-AGAGGTGATTAAACGACGTGGTGACCACCGAAAAAAG----AGTGCA
CGCACGCATGCGTACAGTATTTCTTTTCGGAGGAAGGCCGGATGCGTGTATTTTACTCCCGGTGGAGGTGGAGTCGTAAC
TAGCGCTGGAATTGCTGCCACTGACTGACTCTTG----------------------------------------------
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--------------------------------------------------------------------------TTGTGT
TTCTTGTGTTTGTGCTTTGCCCTCTCCTC---------------------------------------------------
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--------TCCTGCAGCTTAATTAATGACACGCTGCTGCTTCTGCACTGCTAGTGGAACACGCGCCCCACACCGCTCCCC
ATTAATGAATGAATGAATGGGTGAGCCTCCCGAGTGAGTGACAAGTGATGAGAGAGAGAGAGAGAGCTGAGGGGAAAGCA
ACGGGAGGACAGGGGAAAAGC------------TAGCGAGCGAGCGAACAAAAGCGACCAGCTAGCTCCGGCAGCACCC-
-ACTACGCCCCCTTTCGCCAATCTACTCCACTT----------CACTCCACTGTAAATCTATCTATCTGGGCCT-GGGGA
AGCAAGGAATTTGAAGTCGACATGAG---CT------AGGGTGAGAAGCCAAGCAAGCAGGCGACGCAAGATCGACGGCT
CTCA------CCACTCTCCCCGTGCCAGGACTAGGAGGGACGATGCCGCTCCACCTGCTGCTCCTCCTC---CTGCTCCT
GCCGTCCGCCGCCGTGGCCGGCAAGGCCCGCCAGTCCTCCTCCTTCGCCCTCGATTTCTTCCCTGGCGACGGCGCCATCG
CGCAGCTCGCTCTCACCGGCGCCAACGCCACCTCCGCCGGCGACATCTCCATGCGCTCCCCGCGCGCCCGGGTACAGTAC
CACAAACCCATCCACTTGGCCCCCGTCGCCACCGGCTTCTCAACCTACTTCTCCTTCTCTCTCCACCCTAGCCCCAAATC
TCACGCCGCCTCCATCGCCTTCTTCCTAACGCCCGCCGCGCC------------CTCGCCCGCCGTTAACGCCCTCGCCG
------TCGTCTTCGCCGCCGCGGACTCCAGCCACATCCGAGTCCAAATCGACCTCGCCGGTGAAACGGCCGCCCAGACC
GCCCCCCGCGGCATCCCCAAAAAGCTGCATTCATGGATAGACTACAACGCCACATCCGCCACGCTCCAGGTCCGTCTCTC
TGCCTCGCGCCTCCCCAAGCCGCCGCGCGCGCTGCTCTCCCACCCGCTCCATCTCCACTCCGCCCTCCTCCTCCGCA---
---GCACCAAGCCCATGCTCGCCGGATTCGCATCCTCCCACGCCAACTGCAGCCTCTTCAGCTGGGCCTTCAGGGCCAAC
CACGGGCCTCCCTACCTCATGCACTCCCAGCCACTCAATCCCACCGGCTTATCGCTCACCACGCCGCTGCCACACCGCCT
CCCCCGCGCTCCCCCGGGCAACCGCTACCCCTGGGTTTCGCTGCTGTTGGCGGCCGCGTGCGGCGCCGTCTTCACATTCG
TCGTGCTCTTCGTCTGGTACTCCATGGGGAAGCGCCGCCCGGTCGCGCCGGTGGAGTACCCCATGCACCCGTCCTCCTCC
GACATCGTCTACGAGAAGATTGTGCTGGTCGGAGTCAAGGACCTCCCTGCCGATGTCACCGCAGCTGCTCACAAGTAGCC
GCTATCCTCTCCTCTAGATTCTACTGCAAGTGTGCTCCTGTAACTGTAAGTAGGAAATTGTTGCTAGCAAGCGCGGTGGA
AAATGCAGATTTTGCCGGCAAAGCGAACAACGCAAATTCTGCACTTCCCACCGGGATTAGGATTCGATTGCTCTTTCTAA
ATTGTAACTTGTCAATTGTCATGTTATCCACCACTGCTACCAATTCTTCTTTGTATGCTTATTAGTCCATGT----CCTA
GTACTATTCAAGAGCTC-TCTTATCATCTCTAATGGACAGAGTAACATGATGTTTGTTTTTTCGGCGAATGCAAATAATA
TAGCTGATGACAAATTGAGGCATGATATATTAGTA------TCGCGGTTTGTTCCAAAA-TATAGGTAAAATTTCACAAC
TCCACCCGATTTCTGCTCAATCCCCAGATACTGAATGCATCCACCGGGTTCTTTAGTGACTG---CTCCTCCTCAATTTA
TGCGCTTGTGCTTTGCAGAGTTGCTTGCTTTGGTGATTGCTCCCCCTCAATAATGCACCTGTGCTTTTCAAACGCACTTC
ACCGCTGCTGTTTAATTTACTCCTGCATTAGTAGATTCGCAGTTTCTTCTTCGGCAGCTTCAACTTGCGGGAGACTCTTG
TTGCAGTTTGGTGTCATGGGTCTGTGCCAAGTTGC-TTAACAAGATGCTGCTAGGTGCAATTCAGTTAGCCAAAGCCACT
TTGCATTAATATTGTAGATGTGCACGAGAGTGCTGAAATCATTATGGGAGATCTAGGAGCATGCTATATGCCCATTGCTA
CTTTCAGTTAGGAACCACTAGCTGTATTATGGCATCCAGGATTCCAGGGTTTGCTTTACTTTTAGGTTAGTTGTATCCTG
GAACCTGATGCTATTTTTGGCTGACCAGTTGCATCTTGAAAAATGTAAAGACGGCAAGTTATTAT--AATATACGATCAT
TTTTAGTAATACGTTCATTAGTT-------------------------
>SNPs
--------------------------------S-------------------------------------SSSS------
-S------S---S---------S---------------------------------------------------------
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------S--S----S--S-S-SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
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-------------------------------------S------------------------------------------
---------------------SSSSSSSSSSSS-----------------------------------------------
--------------------------------------------------------------------------S-----
-------------------------------SSSSSS--S----------------------------------------
----SSSSSS---------------S--------------S----------------------------SSS--------
-----------------------------S--------------------------------------------------
----------------------------------------------------------------S---------------
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-----------S--------------------S-----------------------------------------------
S-------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
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-------------------------S----------------------S--S----------------------------
--S--------------------------------------------------------------------------SS-
------S-------------------------------------------------------------------------
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------------------------------S-------------------------------------------------
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------------------------------S----SSSSSS---------------------------------------
---S----------------------------------------------------------SSS---------------
-------------------------S------------------------------------------------------
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-------------------S---------------------------------------S--------------------
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---------------------------------------------------------------------S----------
----------------------------------S------S--------------------------------------
------------S----------SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_660
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GACCTTTTTGTGTGACGCCC------------------------------------------------------------
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>reverse_2243
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--CTGCTCTTCGTCTGGTACTCC---------------------------------------------------------
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>forward_710
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--------------------------------------------------CGCCTCACAGATATGCGCTA----------
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>reverse_2756
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-----------------------------------TCTGTATCGCGGTTTGTTCCA------------------------
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