Multiple sequence alignment - TraesCS2D01G265200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G265200 chr2D 100.000 2297 0 0 1 2297 324038190 324035894 0.000000e+00 4242.0
1 TraesCS2D01G265200 chr2B 92.801 1653 70 13 371 2010 392611870 392610254 0.000000e+00 2348.0
2 TraesCS2D01G265200 chr2B 90.000 280 17 6 42 314 392612161 392611886 3.630000e-93 351.0
3 TraesCS2D01G265200 chr1B 81.119 143 19 4 1080 1221 389980478 389980343 8.680000e-20 108.0
4 TraesCS2D01G265200 chr1D 80.420 143 20 4 1080 1221 288546184 288546049 4.040000e-18 102.0
5 TraesCS2D01G265200 chrUn 88.158 76 7 2 1147 1221 90726670 90726744 3.140000e-14 89.8
6 TraesCS2D01G265200 chrUn 88.158 76 7 2 1147 1221 90939215 90939289 3.140000e-14 89.8
7 TraesCS2D01G265200 chrUn 88.158 76 7 2 1147 1221 401026540 401026614 3.140000e-14 89.8
8 TraesCS2D01G265200 chr7A 88.158 76 7 2 1147 1221 36629941 36630015 3.140000e-14 89.8
9 TraesCS2D01G265200 chr7A 93.443 61 1 2 1159 1219 241367184 241367127 1.130000e-13 87.9
10 TraesCS2D01G265200 chr7B 93.443 61 1 2 1159 1219 200022428 200022371 1.130000e-13 87.9
11 TraesCS2D01G265200 chr7B 97.826 46 1 0 2108 2153 336480854 336480899 1.890000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G265200 chr2D 324035894 324038190 2296 True 4242.0 4242 100.0000 1 2297 1 chr2D.!!$R1 2296
1 TraesCS2D01G265200 chr2B 392610254 392612161 1907 True 1349.5 2348 91.4005 42 2010 2 chr2B.!!$R1 1968


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 927 0.250338 GGGAAGCTGGTTTGTCTCGT 60.25 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2176 0.095245 CTTGATAAGTGCCGCGTGTG 59.905 55.0 4.92 0.0 0.0 3.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.975282 GGAATTACTAGTTCCTTCGAAGGT 58.025 41.667 36.74 23.87 46.54 3.50
26 27 5.811100 GGAATTACTAGTTCCTTCGAAGGTG 59.189 44.000 36.74 24.90 46.54 4.00
27 28 5.997384 ATTACTAGTTCCTTCGAAGGTGT 57.003 39.130 36.74 27.98 46.54 4.16
28 29 3.938289 ACTAGTTCCTTCGAAGGTGTC 57.062 47.619 36.74 27.23 46.54 3.67
29 30 3.228453 ACTAGTTCCTTCGAAGGTGTCA 58.772 45.455 36.74 19.92 46.54 3.58
30 31 3.833070 ACTAGTTCCTTCGAAGGTGTCAT 59.167 43.478 36.74 23.26 46.54 3.06
31 32 3.320673 AGTTCCTTCGAAGGTGTCATC 57.679 47.619 36.74 20.00 46.54 2.92
32 33 2.028020 AGTTCCTTCGAAGGTGTCATCC 60.028 50.000 36.74 19.93 46.54 3.51
33 34 1.938585 TCCTTCGAAGGTGTCATCCT 58.061 50.000 36.74 0.00 46.54 3.24
35 36 2.028112 TCCTTCGAAGGTGTCATCCTTG 60.028 50.000 36.74 12.70 46.38 3.61
36 37 2.028112 CCTTCGAAGGTGTCATCCTTGA 60.028 50.000 32.16 6.76 46.38 3.02
37 38 3.369892 CCTTCGAAGGTGTCATCCTTGAT 60.370 47.826 32.16 0.00 46.38 2.57
38 39 4.141937 CCTTCGAAGGTGTCATCCTTGATA 60.142 45.833 32.16 0.00 46.38 2.15
39 40 5.414789 TTCGAAGGTGTCATCCTTGATAA 57.585 39.130 10.35 2.03 46.38 1.75
40 41 4.755411 TCGAAGGTGTCATCCTTGATAAC 58.245 43.478 10.35 0.00 46.38 1.89
106 111 5.565592 TGCCAATACATGATGAACTGAAC 57.434 39.130 0.00 0.00 0.00 3.18
151 158 5.391312 AACAAGAAATAAAGCGGCATCTT 57.609 34.783 1.45 0.00 0.00 2.40
216 223 7.724305 ACACCGATAAAAGAAATATATGCGT 57.276 32.000 0.00 0.00 0.00 5.24
270 277 6.522165 AGCACGATTATATGTATGTACGAACG 59.478 38.462 0.00 0.00 0.00 3.95
293 304 3.388345 TGCAATCAAGCAAGCAATCAA 57.612 38.095 0.00 0.00 42.46 2.57
298 309 5.061808 GCAATCAAGCAAGCAATCAAAGTAG 59.938 40.000 0.00 0.00 0.00 2.57
314 325 2.618053 AGTAGCGAGTTAACCATGCAC 58.382 47.619 14.39 10.75 0.00 4.57
315 326 2.233922 AGTAGCGAGTTAACCATGCACT 59.766 45.455 14.39 12.25 0.00 4.40
316 327 2.185004 AGCGAGTTAACCATGCACTT 57.815 45.000 14.39 0.00 0.00 3.16
317 328 2.504367 AGCGAGTTAACCATGCACTTT 58.496 42.857 14.39 0.00 0.00 2.66
318 329 2.226437 AGCGAGTTAACCATGCACTTTG 59.774 45.455 14.39 0.00 0.00 2.77
319 330 2.584791 CGAGTTAACCATGCACTTTGC 58.415 47.619 0.88 0.00 45.29 3.68
329 340 3.117589 GCACTTTGCAGCATCCAAG 57.882 52.632 0.00 0.00 44.26 3.61
330 341 0.389426 GCACTTTGCAGCATCCAAGG 60.389 55.000 9.61 1.40 44.26 3.61
331 342 0.963962 CACTTTGCAGCATCCAAGGT 59.036 50.000 9.61 0.00 33.48 3.50
332 343 1.342174 CACTTTGCAGCATCCAAGGTT 59.658 47.619 9.61 0.00 31.24 3.50
333 344 2.041701 ACTTTGCAGCATCCAAGGTTT 58.958 42.857 9.61 0.00 29.58 3.27
334 345 2.435437 ACTTTGCAGCATCCAAGGTTTT 59.565 40.909 9.61 0.00 29.58 2.43
335 346 3.118298 ACTTTGCAGCATCCAAGGTTTTT 60.118 39.130 9.61 0.00 29.58 1.94
357 368 5.840243 TTTTAGATTGCTCACCATCCATG 57.160 39.130 0.00 0.00 0.00 3.66
358 369 1.688772 AGATTGCTCACCATCCATGC 58.311 50.000 0.00 0.00 0.00 4.06
359 370 1.214673 AGATTGCTCACCATCCATGCT 59.785 47.619 0.00 0.00 0.00 3.79
360 371 1.337071 GATTGCTCACCATCCATGCTG 59.663 52.381 0.00 0.00 0.00 4.41
361 372 0.328926 TTGCTCACCATCCATGCTGA 59.671 50.000 0.00 0.00 0.00 4.26
362 373 0.328926 TGCTCACCATCCATGCTGAA 59.671 50.000 0.00 0.00 0.00 3.02
363 374 1.064240 TGCTCACCATCCATGCTGAAT 60.064 47.619 0.00 0.00 0.00 2.57
364 375 1.337071 GCTCACCATCCATGCTGAATG 59.663 52.381 0.00 0.00 35.89 2.67
480 491 1.191489 TCTTGACCATGGACTCGGCA 61.191 55.000 21.47 3.49 0.00 5.69
555 566 2.516888 CCTGGTGGTCGGGTGTTCT 61.517 63.158 0.00 0.00 37.13 3.01
831 842 1.299468 GCCGGAGAGCACGACTATG 60.299 63.158 5.05 0.00 0.00 2.23
909 920 2.526110 GGTGGGGGAAGCTGGTTT 59.474 61.111 0.00 0.00 0.00 3.27
916 927 0.250338 GGGAAGCTGGTTTGTCTCGT 60.250 55.000 0.00 0.00 0.00 4.18
1038 1049 0.317160 CGCAGGACACAGTGTTAGGA 59.683 55.000 7.86 0.00 0.00 2.94
1041 1052 2.289694 GCAGGACACAGTGTTAGGACAT 60.290 50.000 7.86 0.00 38.23 3.06
1126 1137 3.382832 CGTCCTTCTCTGCCGGGT 61.383 66.667 2.18 0.00 0.00 5.28
1129 1140 0.108281 GTCCTTCTCTGCCGGGTTAC 60.108 60.000 2.18 0.00 0.00 2.50
1161 1172 1.248101 TGGAGTCGATCAGCACGGAA 61.248 55.000 0.00 0.00 0.00 4.30
1349 1360 1.719600 GTAGACAACAGCAGGAGCAG 58.280 55.000 0.00 0.00 45.49 4.24
1407 1418 1.693640 CCTTGAGGAGGCCATGGTT 59.306 57.895 14.67 1.53 39.09 3.67
1416 1427 3.443045 GCCATGGTTGCCGGAGTG 61.443 66.667 14.67 0.00 0.00 3.51
1438 1452 0.038166 TTGGCAAGTTGCTAGAGGGG 59.962 55.000 26.16 0.00 44.28 4.79
1448 1462 2.708132 TAGAGGGGGAGGGGGAGG 60.708 72.222 0.00 0.00 0.00 4.30
1453 1467 3.015753 GGGGAGGGGGAGGTTGTC 61.016 72.222 0.00 0.00 0.00 3.18
1465 1483 1.334869 GAGGTTGTCACTTTGCCTGTG 59.665 52.381 0.00 0.00 36.82 3.66
1500 1518 3.064931 GCAGCCGGTTTATATAGTGTCC 58.935 50.000 1.90 0.00 0.00 4.02
1503 1521 3.054878 GCCGGTTTATATAGTGTCCACG 58.945 50.000 1.90 0.00 36.20 4.94
1534 1552 5.622346 AGGATTGGGATTAGTGAAGAGTC 57.378 43.478 0.00 0.00 0.00 3.36
1536 1554 4.164221 GGATTGGGATTAGTGAAGAGTCCA 59.836 45.833 0.00 0.00 0.00 4.02
1546 1564 3.006967 AGTGAAGAGTCCACAATTAGCGT 59.993 43.478 2.89 0.00 37.01 5.07
1547 1565 4.219944 AGTGAAGAGTCCACAATTAGCGTA 59.780 41.667 2.89 0.00 37.01 4.42
1548 1566 5.105310 AGTGAAGAGTCCACAATTAGCGTAT 60.105 40.000 2.89 0.00 37.01 3.06
1549 1567 5.581085 GTGAAGAGTCCACAATTAGCGTATT 59.419 40.000 0.00 0.00 34.81 1.89
1550 1568 5.810587 TGAAGAGTCCACAATTAGCGTATTC 59.189 40.000 0.00 0.00 0.00 1.75
1551 1569 5.599999 AGAGTCCACAATTAGCGTATTCT 57.400 39.130 0.00 0.00 0.00 2.40
1552 1570 5.978814 AGAGTCCACAATTAGCGTATTCTT 58.021 37.500 0.00 0.00 0.00 2.52
1553 1571 7.108841 AGAGTCCACAATTAGCGTATTCTTA 57.891 36.000 0.00 0.00 0.00 2.10
1554 1572 7.203910 AGAGTCCACAATTAGCGTATTCTTAG 58.796 38.462 0.00 0.00 0.00 2.18
1555 1573 6.875076 AGTCCACAATTAGCGTATTCTTAGT 58.125 36.000 0.00 0.00 0.00 2.24
1556 1574 6.757010 AGTCCACAATTAGCGTATTCTTAGTG 59.243 38.462 0.00 0.00 0.00 2.74
1557 1575 6.018994 GTCCACAATTAGCGTATTCTTAGTGG 60.019 42.308 0.00 0.00 43.01 4.00
1558 1576 5.815740 CCACAATTAGCGTATTCTTAGTGGT 59.184 40.000 0.00 0.00 38.32 4.16
1559 1577 6.315393 CCACAATTAGCGTATTCTTAGTGGTT 59.685 38.462 0.00 0.00 38.32 3.67
1560 1578 7.180079 CACAATTAGCGTATTCTTAGTGGTTG 58.820 38.462 0.00 0.00 0.00 3.77
1561 1579 7.064134 CACAATTAGCGTATTCTTAGTGGTTGA 59.936 37.037 0.00 0.00 0.00 3.18
1562 1580 7.064253 ACAATTAGCGTATTCTTAGTGGTTGAC 59.936 37.037 0.00 0.00 0.00 3.18
1563 1581 3.508762 AGCGTATTCTTAGTGGTTGACG 58.491 45.455 0.00 0.00 0.00 4.35
1564 1582 3.057033 AGCGTATTCTTAGTGGTTGACGT 60.057 43.478 0.00 0.00 0.00 4.34
1619 1637 2.162681 GCTTTGTATGGCTGGTTCAGT 58.837 47.619 0.00 0.00 33.43 3.41
1622 1640 2.949177 TGTATGGCTGGTTCAGTTGT 57.051 45.000 0.00 0.00 33.43 3.32
1628 1646 2.203280 TGGTTCAGTTGTGCCCGG 60.203 61.111 0.00 0.00 0.00 5.73
1679 1697 5.650543 ACTGTTTCATCAACCTTTTGTGTC 58.349 37.500 0.00 0.00 33.97 3.67
1770 1789 3.248602 GCCGATCAGTGATTGGTATGAAC 59.751 47.826 31.64 15.97 43.62 3.18
1843 1867 5.975344 CGAATCATTTGAGGGATCATTTGTG 59.025 40.000 0.00 0.00 0.00 3.33
1900 1924 6.152831 AGTGCAAGTAATTTTAATCTGGTCCC 59.847 38.462 0.00 0.00 0.00 4.46
1903 1927 6.603599 GCAAGTAATTTTAATCTGGTCCCTCT 59.396 38.462 0.00 0.00 0.00 3.69
1922 1946 9.886132 GTCCCTCTTATCTTAACTTTTCACATA 57.114 33.333 0.00 0.00 0.00 2.29
1960 1984 8.858003 AATACTCATATAATAGATCAACGCCG 57.142 34.615 0.00 0.00 0.00 6.46
1972 1996 3.828060 TCAACGCCGTTAATTTTACCC 57.172 42.857 0.45 0.00 0.00 3.69
1982 2006 7.488471 CGCCGTTAATTTTACCCAAATGATAAA 59.512 33.333 0.00 0.00 35.09 1.40
1996 2020 5.437289 AATGATAAATGCCATACGTGTGG 57.563 39.130 25.60 25.60 42.35 4.17
1997 2021 3.879998 TGATAAATGCCATACGTGTGGT 58.120 40.909 29.08 14.23 41.47 4.16
2018 2042 3.036075 ACGAAGTAACACTGCCCTAAC 57.964 47.619 0.00 0.00 41.94 2.34
2019 2043 2.366266 ACGAAGTAACACTGCCCTAACA 59.634 45.455 0.00 0.00 41.94 2.41
2020 2044 3.007614 ACGAAGTAACACTGCCCTAACAT 59.992 43.478 0.00 0.00 41.94 2.71
2021 2045 4.000988 CGAAGTAACACTGCCCTAACATT 58.999 43.478 0.00 0.00 0.00 2.71
2022 2046 4.454504 CGAAGTAACACTGCCCTAACATTT 59.545 41.667 0.00 0.00 0.00 2.32
2023 2047 5.048991 CGAAGTAACACTGCCCTAACATTTT 60.049 40.000 0.00 0.00 0.00 1.82
2024 2048 6.514376 CGAAGTAACACTGCCCTAACATTTTT 60.514 38.462 0.00 0.00 0.00 1.94
2073 2097 7.848223 AAAATCCCAAAAGAACTGAAACTTG 57.152 32.000 0.00 0.00 0.00 3.16
2074 2098 4.385358 TCCCAAAAGAACTGAAACTTGC 57.615 40.909 0.00 0.00 0.00 4.01
2075 2099 3.132111 TCCCAAAAGAACTGAAACTTGCC 59.868 43.478 0.00 0.00 0.00 4.52
2076 2100 3.118811 CCCAAAAGAACTGAAACTTGCCA 60.119 43.478 0.00 0.00 0.00 4.92
2077 2101 4.443315 CCCAAAAGAACTGAAACTTGCCAT 60.443 41.667 0.00 0.00 0.00 4.40
2078 2102 4.746611 CCAAAAGAACTGAAACTTGCCATC 59.253 41.667 0.00 0.00 0.00 3.51
2079 2103 4.590850 AAAGAACTGAAACTTGCCATCC 57.409 40.909 0.00 0.00 0.00 3.51
2080 2104 3.228188 AGAACTGAAACTTGCCATCCA 57.772 42.857 0.00 0.00 0.00 3.41
2081 2105 3.565307 AGAACTGAAACTTGCCATCCAA 58.435 40.909 0.00 0.00 0.00 3.53
2082 2106 3.960102 AGAACTGAAACTTGCCATCCAAA 59.040 39.130 0.00 0.00 31.94 3.28
2083 2107 3.733443 ACTGAAACTTGCCATCCAAAC 57.267 42.857 0.00 0.00 31.94 2.93
2084 2108 3.030291 ACTGAAACTTGCCATCCAAACA 58.970 40.909 0.00 0.00 31.94 2.83
2085 2109 3.068590 ACTGAAACTTGCCATCCAAACAG 59.931 43.478 0.00 0.00 31.94 3.16
2086 2110 3.030291 TGAAACTTGCCATCCAAACAGT 58.970 40.909 0.00 0.00 31.94 3.55
2087 2111 4.211125 TGAAACTTGCCATCCAAACAGTA 58.789 39.130 0.00 0.00 31.94 2.74
2088 2112 4.646945 TGAAACTTGCCATCCAAACAGTAA 59.353 37.500 0.00 0.00 31.94 2.24
2089 2113 4.853924 AACTTGCCATCCAAACAGTAAG 57.146 40.909 0.00 0.00 31.94 2.34
2090 2114 3.832527 ACTTGCCATCCAAACAGTAAGT 58.167 40.909 0.00 0.00 31.94 2.24
2091 2115 4.215109 ACTTGCCATCCAAACAGTAAGTT 58.785 39.130 0.00 0.00 43.89 2.66
2092 2116 4.037923 ACTTGCCATCCAAACAGTAAGTTG 59.962 41.667 0.00 0.00 41.19 3.16
2093 2117 3.561143 TGCCATCCAAACAGTAAGTTGT 58.439 40.909 0.00 0.00 41.19 3.32
2094 2118 3.568007 TGCCATCCAAACAGTAAGTTGTC 59.432 43.478 0.00 0.00 41.19 3.18
2095 2119 3.568007 GCCATCCAAACAGTAAGTTGTCA 59.432 43.478 0.00 0.00 41.19 3.58
2096 2120 4.218417 GCCATCCAAACAGTAAGTTGTCAT 59.782 41.667 0.00 0.00 41.19 3.06
2097 2121 5.414454 GCCATCCAAACAGTAAGTTGTCATA 59.586 40.000 0.00 0.00 41.19 2.15
2098 2122 6.622896 GCCATCCAAACAGTAAGTTGTCATAC 60.623 42.308 0.00 0.00 41.19 2.39
2099 2123 6.655003 CCATCCAAACAGTAAGTTGTCATACT 59.345 38.462 0.00 0.00 41.19 2.12
2100 2124 7.174946 CCATCCAAACAGTAAGTTGTCATACTT 59.825 37.037 0.00 0.00 41.19 2.24
2101 2125 7.724305 TCCAAACAGTAAGTTGTCATACTTC 57.276 36.000 0.00 0.00 41.19 3.01
2102 2126 7.276658 TCCAAACAGTAAGTTGTCATACTTCA 58.723 34.615 0.00 0.00 41.19 3.02
2103 2127 7.771361 TCCAAACAGTAAGTTGTCATACTTCAA 59.229 33.333 0.00 0.00 41.19 2.69
2104 2128 7.855904 CCAAACAGTAAGTTGTCATACTTCAAC 59.144 37.037 0.00 0.00 41.19 3.18
2105 2129 8.394877 CAAACAGTAAGTTGTCATACTTCAACA 58.605 33.333 9.97 0.00 44.08 3.33
2106 2130 7.478520 ACAGTAAGTTGTCATACTTCAACAC 57.521 36.000 9.97 1.95 44.08 3.32
2107 2131 7.272978 ACAGTAAGTTGTCATACTTCAACACT 58.727 34.615 9.97 3.86 44.08 3.55
2108 2132 8.418662 ACAGTAAGTTGTCATACTTCAACACTA 58.581 33.333 9.97 0.27 44.08 2.74
2109 2133 9.256477 CAGTAAGTTGTCATACTTCAACACTAA 57.744 33.333 9.97 0.00 44.08 2.24
2110 2134 9.826574 AGTAAGTTGTCATACTTCAACACTAAA 57.173 29.630 9.97 0.00 44.08 1.85
2112 2136 8.732746 AAGTTGTCATACTTCAACACTAAAGT 57.267 30.769 9.97 0.00 44.08 2.66
2113 2137 8.732746 AGTTGTCATACTTCAACACTAAAGTT 57.267 30.769 9.97 0.00 44.08 2.66
2115 2139 6.954944 TGTCATACTTCAACACTAAAGTTGC 58.045 36.000 2.14 0.00 46.44 4.17
2116 2140 6.017440 TGTCATACTTCAACACTAAAGTTGCC 60.017 38.462 2.14 0.00 46.44 4.52
2117 2141 6.017440 GTCATACTTCAACACTAAAGTTGCCA 60.017 38.462 2.14 0.00 46.44 4.92
2118 2142 6.714810 TCATACTTCAACACTAAAGTTGCCAT 59.285 34.615 2.14 0.00 46.44 4.40
2119 2143 5.438761 ACTTCAACACTAAAGTTGCCATC 57.561 39.130 2.14 0.00 46.44 3.51
2120 2144 4.887071 ACTTCAACACTAAAGTTGCCATCA 59.113 37.500 2.14 0.00 46.44 3.07
2121 2145 5.359576 ACTTCAACACTAAAGTTGCCATCAA 59.640 36.000 2.14 0.00 46.44 2.57
2122 2146 5.843673 TCAACACTAAAGTTGCCATCAAA 57.156 34.783 2.14 0.00 46.44 2.69
2123 2147 6.214191 TCAACACTAAAGTTGCCATCAAAA 57.786 33.333 2.14 0.00 46.44 2.44
2124 2148 6.634805 TCAACACTAAAGTTGCCATCAAAAA 58.365 32.000 2.14 0.00 46.44 1.94
2144 2168 3.070576 GCCAGGGCGGAATTGCTT 61.071 61.111 0.00 0.00 36.56 3.91
2145 2169 3.068729 GCCAGGGCGGAATTGCTTC 62.069 63.158 0.00 0.00 36.56 3.86
2146 2170 2.764314 CCAGGGCGGAATTGCTTCG 61.764 63.158 0.00 0.00 36.56 3.79
2147 2171 2.040544 CAGGGCGGAATTGCTTCGT 61.041 57.895 0.00 0.00 34.52 3.85
2148 2172 2.040544 AGGGCGGAATTGCTTCGTG 61.041 57.895 0.00 0.00 34.52 4.35
2149 2173 2.202479 GGCGGAATTGCTTCGTGC 60.202 61.111 0.00 0.00 43.25 5.34
2150 2174 2.202479 GCGGAATTGCTTCGTGCC 60.202 61.111 0.00 0.00 42.00 5.01
2151 2175 2.976840 GCGGAATTGCTTCGTGCCA 61.977 57.895 0.00 0.00 42.00 4.92
2152 2176 1.154225 CGGAATTGCTTCGTGCCAC 60.154 57.895 0.00 0.00 42.00 5.01
2153 2177 1.851021 CGGAATTGCTTCGTGCCACA 61.851 55.000 0.00 0.00 42.00 4.17
2154 2178 0.387239 GGAATTGCTTCGTGCCACAC 60.387 55.000 0.00 0.00 42.00 3.82
2155 2179 0.310543 GAATTGCTTCGTGCCACACA 59.689 50.000 0.00 0.00 42.00 3.72
2156 2180 0.030638 AATTGCTTCGTGCCACACAC 59.969 50.000 0.00 0.00 46.45 3.82
2166 2190 2.663520 CCACACACGCGGCACTTA 60.664 61.111 12.47 0.00 0.00 2.24
2167 2191 2.032634 CCACACACGCGGCACTTAT 61.033 57.895 12.47 0.00 0.00 1.73
2168 2192 1.419922 CACACACGCGGCACTTATC 59.580 57.895 12.47 0.00 0.00 1.75
2169 2193 1.005512 ACACACGCGGCACTTATCA 60.006 52.632 12.47 0.00 0.00 2.15
2170 2194 0.601576 ACACACGCGGCACTTATCAA 60.602 50.000 12.47 0.00 0.00 2.57
2171 2195 0.095245 CACACGCGGCACTTATCAAG 59.905 55.000 12.47 0.00 0.00 3.02
2172 2196 1.019278 ACACGCGGCACTTATCAAGG 61.019 55.000 12.47 0.00 0.00 3.61
2173 2197 1.019278 CACGCGGCACTTATCAAGGT 61.019 55.000 12.47 0.00 0.00 3.50
2174 2198 0.739813 ACGCGGCACTTATCAAGGTC 60.740 55.000 12.47 0.00 0.00 3.85
2175 2199 1.429148 CGCGGCACTTATCAAGGTCC 61.429 60.000 0.00 0.00 0.00 4.46
2176 2200 0.107654 GCGGCACTTATCAAGGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
2177 2201 1.138266 GCGGCACTTATCAAGGTCCTA 59.862 52.381 0.00 0.00 0.00 2.94
2178 2202 2.419574 GCGGCACTTATCAAGGTCCTAA 60.420 50.000 0.00 0.00 0.00 2.69
2179 2203 3.744530 GCGGCACTTATCAAGGTCCTAAT 60.745 47.826 0.00 0.00 0.00 1.73
2180 2204 4.451900 CGGCACTTATCAAGGTCCTAATT 58.548 43.478 0.00 0.00 0.00 1.40
2181 2205 4.881850 CGGCACTTATCAAGGTCCTAATTT 59.118 41.667 0.00 0.00 0.00 1.82
2182 2206 5.357032 CGGCACTTATCAAGGTCCTAATTTT 59.643 40.000 0.00 0.00 0.00 1.82
2183 2207 6.540914 CGGCACTTATCAAGGTCCTAATTTTA 59.459 38.462 0.00 0.00 0.00 1.52
2184 2208 7.228706 CGGCACTTATCAAGGTCCTAATTTTAT 59.771 37.037 0.00 0.00 0.00 1.40
2185 2209 8.914011 GGCACTTATCAAGGTCCTAATTTTATT 58.086 33.333 0.00 0.00 0.00 1.40
2194 2218 9.338622 CAAGGTCCTAATTTTATTAGGTAGTGG 57.661 37.037 19.68 8.88 41.69 4.00
2195 2219 8.042286 AGGTCCTAATTTTATTAGGTAGTGGG 57.958 38.462 19.68 0.68 41.69 4.61
2196 2220 7.630534 AGGTCCTAATTTTATTAGGTAGTGGGT 59.369 37.037 19.68 3.10 41.69 4.51
2197 2221 8.277197 GGTCCTAATTTTATTAGGTAGTGGGTT 58.723 37.037 19.68 0.00 41.69 4.11
2198 2222 9.117183 GTCCTAATTTTATTAGGTAGTGGGTTG 57.883 37.037 19.68 0.00 41.69 3.77
2199 2223 9.060137 TCCTAATTTTATTAGGTAGTGGGTTGA 57.940 33.333 19.68 0.71 41.69 3.18
2200 2224 9.338622 CCTAATTTTATTAGGTAGTGGGTTGAG 57.661 37.037 14.58 0.00 37.38 3.02
2201 2225 9.901172 CTAATTTTATTAGGTAGTGGGTTGAGT 57.099 33.333 0.00 0.00 0.00 3.41
2204 2228 9.676861 ATTTTATTAGGTAGTGGGTTGAGTAAC 57.323 33.333 0.00 0.00 36.04 2.50
2205 2229 8.439964 TTTATTAGGTAGTGGGTTGAGTAACT 57.560 34.615 0.00 0.00 36.99 2.24
2206 2230 5.990120 TTAGGTAGTGGGTTGAGTAACTC 57.010 43.478 0.00 0.00 37.80 3.01
2207 2231 4.129317 AGGTAGTGGGTTGAGTAACTCT 57.871 45.455 0.00 0.00 38.15 3.24
2208 2232 4.490706 AGGTAGTGGGTTGAGTAACTCTT 58.509 43.478 0.00 0.00 38.15 2.85
2209 2233 5.648247 AGGTAGTGGGTTGAGTAACTCTTA 58.352 41.667 0.00 0.00 38.15 2.10
2210 2234 5.479724 AGGTAGTGGGTTGAGTAACTCTTAC 59.520 44.000 0.00 0.00 38.15 2.34
2211 2235 4.886496 AGTGGGTTGAGTAACTCTTACC 57.114 45.455 0.00 0.00 38.15 2.85
2212 2236 4.490706 AGTGGGTTGAGTAACTCTTACCT 58.509 43.478 1.22 0.00 38.15 3.08
2213 2237 4.527427 AGTGGGTTGAGTAACTCTTACCTC 59.473 45.833 1.22 0.00 38.15 3.85
2214 2238 3.836562 TGGGTTGAGTAACTCTTACCTCC 59.163 47.826 1.22 0.00 38.15 4.30
2215 2239 3.836562 GGGTTGAGTAACTCTTACCTCCA 59.163 47.826 1.22 0.00 36.69 3.86
2216 2240 4.285260 GGGTTGAGTAACTCTTACCTCCAA 59.715 45.833 1.22 3.23 36.69 3.53
2217 2241 5.236282 GGTTGAGTAACTCTTACCTCCAAC 58.764 45.833 0.00 9.61 38.83 3.77
2218 2242 5.236282 GTTGAGTAACTCTTACCTCCAACC 58.764 45.833 0.00 0.00 36.52 3.77
2219 2243 4.485875 TGAGTAACTCTTACCTCCAACCA 58.514 43.478 0.00 0.00 36.81 3.67
2220 2244 4.903049 TGAGTAACTCTTACCTCCAACCAA 59.097 41.667 0.00 0.00 36.81 3.67
2221 2245 5.546499 TGAGTAACTCTTACCTCCAACCAAT 59.454 40.000 0.00 0.00 36.81 3.16
2222 2246 6.043938 TGAGTAACTCTTACCTCCAACCAATT 59.956 38.462 0.00 0.00 36.81 2.32
2223 2247 6.849151 AGTAACTCTTACCTCCAACCAATTT 58.151 36.000 0.00 0.00 36.81 1.82
2224 2248 6.715264 AGTAACTCTTACCTCCAACCAATTTG 59.285 38.462 0.00 0.00 36.81 2.32
2225 2249 5.061721 ACTCTTACCTCCAACCAATTTGT 57.938 39.130 0.00 0.00 32.71 2.83
2226 2250 6.195600 ACTCTTACCTCCAACCAATTTGTA 57.804 37.500 0.00 0.00 32.71 2.41
2227 2251 6.607019 ACTCTTACCTCCAACCAATTTGTAA 58.393 36.000 0.00 0.00 32.71 2.41
2228 2252 7.238710 ACTCTTACCTCCAACCAATTTGTAAT 58.761 34.615 0.00 0.00 32.71 1.89
2229 2253 7.393515 ACTCTTACCTCCAACCAATTTGTAATC 59.606 37.037 0.00 0.00 32.71 1.75
2230 2254 6.661805 TCTTACCTCCAACCAATTTGTAATCC 59.338 38.462 0.00 0.00 32.71 3.01
2231 2255 4.746466 ACCTCCAACCAATTTGTAATCCA 58.254 39.130 0.00 0.00 32.71 3.41
2232 2256 4.526650 ACCTCCAACCAATTTGTAATCCAC 59.473 41.667 0.00 0.00 32.71 4.02
2233 2257 4.081697 CCTCCAACCAATTTGTAATCCACC 60.082 45.833 0.00 0.00 32.71 4.61
2234 2258 3.835395 TCCAACCAATTTGTAATCCACCC 59.165 43.478 0.00 0.00 32.71 4.61
2235 2259 3.367910 CCAACCAATTTGTAATCCACCCG 60.368 47.826 0.00 0.00 32.71 5.28
2236 2260 1.822371 ACCAATTTGTAATCCACCCGC 59.178 47.619 0.00 0.00 0.00 6.13
2237 2261 2.099405 CCAATTTGTAATCCACCCGCT 58.901 47.619 0.00 0.00 0.00 5.52
2238 2262 3.283751 CCAATTTGTAATCCACCCGCTA 58.716 45.455 0.00 0.00 0.00 4.26
2239 2263 3.315191 CCAATTTGTAATCCACCCGCTAG 59.685 47.826 0.00 0.00 0.00 3.42
2240 2264 3.926058 ATTTGTAATCCACCCGCTAGT 57.074 42.857 0.00 0.00 0.00 2.57
2241 2265 3.706600 TTTGTAATCCACCCGCTAGTT 57.293 42.857 0.00 0.00 0.00 2.24
2242 2266 4.822685 TTTGTAATCCACCCGCTAGTTA 57.177 40.909 0.00 0.00 0.00 2.24
2243 2267 4.822685 TTGTAATCCACCCGCTAGTTAA 57.177 40.909 0.00 0.00 0.00 2.01
2244 2268 4.822685 TGTAATCCACCCGCTAGTTAAA 57.177 40.909 0.00 0.00 0.00 1.52
2245 2269 5.362105 TGTAATCCACCCGCTAGTTAAAT 57.638 39.130 0.00 0.00 0.00 1.40
2246 2270 5.362263 TGTAATCCACCCGCTAGTTAAATC 58.638 41.667 0.00 0.00 0.00 2.17
2247 2271 2.589798 TCCACCCGCTAGTTAAATCG 57.410 50.000 0.00 0.00 0.00 3.34
2248 2272 2.101783 TCCACCCGCTAGTTAAATCGA 58.898 47.619 0.00 0.00 0.00 3.59
2249 2273 2.696707 TCCACCCGCTAGTTAAATCGAT 59.303 45.455 0.00 0.00 0.00 3.59
2250 2274 3.890756 TCCACCCGCTAGTTAAATCGATA 59.109 43.478 0.00 0.00 0.00 2.92
2251 2275 3.985925 CCACCCGCTAGTTAAATCGATAC 59.014 47.826 0.00 0.00 0.00 2.24
2252 2276 4.261909 CCACCCGCTAGTTAAATCGATACT 60.262 45.833 0.00 0.85 0.00 2.12
2253 2277 5.048504 CCACCCGCTAGTTAAATCGATACTA 60.049 44.000 0.00 2.17 0.00 1.82
2254 2278 5.855395 CACCCGCTAGTTAAATCGATACTAC 59.145 44.000 0.00 0.00 0.00 2.73
2255 2279 5.084722 CCCGCTAGTTAAATCGATACTACG 58.915 45.833 0.00 9.38 0.00 3.51
2256 2280 5.106948 CCCGCTAGTTAAATCGATACTACGA 60.107 44.000 19.21 0.00 46.04 3.43
2266 2290 4.210832 TCGATACTACGATTGCAGAGTG 57.789 45.455 0.00 0.00 37.37 3.51
2267 2291 2.721603 CGATACTACGATTGCAGAGTGC 59.278 50.000 0.00 0.00 38.59 4.40
2268 2292 3.792124 CGATACTACGATTGCAGAGTGCA 60.792 47.826 0.00 0.00 43.06 4.57
2279 2303 3.736530 GCAGAGTGCAACACAAGATAG 57.263 47.619 0.00 0.00 44.26 2.08
2280 2304 3.070018 GCAGAGTGCAACACAAGATAGT 58.930 45.455 0.00 0.00 44.26 2.12
2281 2305 4.245660 GCAGAGTGCAACACAAGATAGTA 58.754 43.478 0.00 0.00 44.26 1.82
2282 2306 4.328440 GCAGAGTGCAACACAAGATAGTAG 59.672 45.833 0.00 0.00 44.26 2.57
2283 2307 4.328440 CAGAGTGCAACACAAGATAGTAGC 59.672 45.833 0.00 0.00 41.43 3.58
2284 2308 4.221703 AGAGTGCAACACAAGATAGTAGCT 59.778 41.667 0.00 0.00 41.43 3.32
2285 2309 5.419155 AGAGTGCAACACAAGATAGTAGCTA 59.581 40.000 0.00 0.00 41.43 3.32
2286 2310 5.655488 AGTGCAACACAAGATAGTAGCTAG 58.345 41.667 0.00 0.00 41.43 3.42
2287 2311 4.268884 GTGCAACACAAGATAGTAGCTAGC 59.731 45.833 6.62 6.62 36.32 3.42
2288 2312 4.160439 TGCAACACAAGATAGTAGCTAGCT 59.840 41.667 23.12 23.12 33.88 3.32
2289 2313 5.359860 TGCAACACAAGATAGTAGCTAGCTA 59.640 40.000 20.67 20.67 31.02 3.32
2290 2314 6.127451 TGCAACACAAGATAGTAGCTAGCTAA 60.127 38.462 25.74 12.24 31.02 3.09
2291 2315 6.757010 GCAACACAAGATAGTAGCTAGCTAAA 59.243 38.462 25.74 16.98 31.02 1.85
2292 2316 7.254151 GCAACACAAGATAGTAGCTAGCTAAAC 60.254 40.741 25.74 17.18 31.02 2.01
2293 2317 7.648039 ACACAAGATAGTAGCTAGCTAAACT 57.352 36.000 25.74 23.06 31.02 2.66
2294 2318 8.068892 ACACAAGATAGTAGCTAGCTAAACTT 57.931 34.615 25.74 21.56 31.02 2.66
2295 2319 8.532819 ACACAAGATAGTAGCTAGCTAAACTTT 58.467 33.333 25.74 16.76 31.02 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.963455 ATCAAGGATGACACCTTCGAAGGAAC 62.963 46.154 43.20 31.28 46.94 3.62
13 14 7.036137 ATCAAGGATGACACCTTCGAAGGAA 62.036 44.000 43.20 27.06 46.94 3.36
14 15 5.604892 ATCAAGGATGACACCTTCGAAGGA 61.605 45.833 43.20 25.64 46.94 3.36
15 16 3.369892 ATCAAGGATGACACCTTCGAAGG 60.370 47.826 37.01 37.01 46.94 3.46
16 17 3.319137 TCAAGGATGACACCTTCGAAG 57.681 47.619 18.51 18.51 46.94 3.79
17 18 3.981071 ATCAAGGATGACACCTTCGAA 57.019 42.857 0.00 0.00 46.94 3.71
18 19 4.466370 AGTTATCAAGGATGACACCTTCGA 59.534 41.667 6.40 8.08 46.94 3.71
19 20 4.759782 AGTTATCAAGGATGACACCTTCG 58.240 43.478 6.40 4.28 46.94 3.79
20 21 5.749109 CGTAGTTATCAAGGATGACACCTTC 59.251 44.000 6.40 0.00 46.94 3.46
22 23 4.954202 TCGTAGTTATCAAGGATGACACCT 59.046 41.667 4.32 0.00 42.69 4.00
23 24 5.067413 TCTCGTAGTTATCAAGGATGACACC 59.933 44.000 4.32 0.00 38.69 4.16
24 25 6.132791 TCTCGTAGTTATCAAGGATGACAC 57.867 41.667 4.32 0.88 38.69 3.67
25 26 6.769134 TTCTCGTAGTTATCAAGGATGACA 57.231 37.500 4.32 0.00 38.69 3.58
26 27 8.543774 CATTTTCTCGTAGTTATCAAGGATGAC 58.456 37.037 0.00 0.00 38.69 3.06
27 28 8.258007 ACATTTTCTCGTAGTTATCAAGGATGA 58.742 33.333 0.00 0.00 40.57 2.92
28 29 8.425577 ACATTTTCTCGTAGTTATCAAGGATG 57.574 34.615 0.00 0.00 0.00 3.51
29 30 9.449719 AAACATTTTCTCGTAGTTATCAAGGAT 57.550 29.630 0.00 0.00 0.00 3.24
30 31 8.842358 AAACATTTTCTCGTAGTTATCAAGGA 57.158 30.769 0.00 0.00 0.00 3.36
59 60 6.485393 TCATGTAACGATAACGATGTAACGA 58.515 36.000 0.00 0.00 42.66 3.85
60 61 6.721442 TCATGTAACGATAACGATGTAACG 57.279 37.500 0.00 0.00 42.66 3.18
61 62 7.001922 GCATCATGTAACGATAACGATGTAAC 58.998 38.462 0.00 0.00 42.66 2.50
64 65 4.447724 GGCATCATGTAACGATAACGATGT 59.552 41.667 0.00 0.00 42.66 3.06
73 78 5.363939 TCATGTATTGGCATCATGTAACGA 58.636 37.500 19.44 5.49 39.61 3.85
106 111 7.939588 TGTTTTTATTTCCATTTTAAGGGGGTG 59.060 33.333 0.00 0.00 0.00 4.61
139 145 5.300034 TGATATTGATTGAAGATGCCGCTTT 59.700 36.000 0.00 0.00 0.00 3.51
174 181 3.449737 GGTGTATTCACTGGTGGCTAGTA 59.550 47.826 2.29 0.00 43.41 1.82
175 182 2.236395 GGTGTATTCACTGGTGGCTAGT 59.764 50.000 2.29 0.00 43.41 2.57
176 183 2.738643 CGGTGTATTCACTGGTGGCTAG 60.739 54.545 3.46 0.00 44.56 3.42
227 234 4.668177 CGTGCTTAATTAACTTGACCCGTG 60.668 45.833 0.00 0.00 0.00 4.94
230 237 5.813080 ATCGTGCTTAATTAACTTGACCC 57.187 39.130 0.00 0.00 0.00 4.46
246 253 6.520790 TCGTTCGTACATACATATAATCGTGC 59.479 38.462 0.00 0.00 0.00 5.34
257 264 4.865365 TGATTGCATTCGTTCGTACATACA 59.135 37.500 4.27 0.00 0.00 2.29
258 265 5.383984 TGATTGCATTCGTTCGTACATAC 57.616 39.130 4.27 0.00 0.00 2.39
259 266 5.501736 GCTTGATTGCATTCGTTCGTACATA 60.502 40.000 4.27 0.00 0.00 2.29
260 267 4.727734 GCTTGATTGCATTCGTTCGTACAT 60.728 41.667 4.27 0.00 0.00 2.29
265 272 2.245795 TGCTTGATTGCATTCGTTCG 57.754 45.000 4.27 0.00 38.12 3.95
270 277 3.930229 TGATTGCTTGCTTGATTGCATTC 59.070 39.130 1.55 1.55 42.96 2.67
293 304 3.000727 GTGCATGGTTAACTCGCTACTT 58.999 45.455 5.42 0.00 0.00 2.24
298 309 2.584791 CAAAGTGCATGGTTAACTCGC 58.415 47.619 5.42 6.53 0.00 5.03
314 325 2.825861 AAACCTTGGATGCTGCAAAG 57.174 45.000 6.36 5.98 0.00 2.77
315 326 3.557228 AAAAACCTTGGATGCTGCAAA 57.443 38.095 6.36 0.00 0.00 3.68
334 345 5.394443 GCATGGATGGTGAGCAATCTAAAAA 60.394 40.000 0.00 0.00 0.00 1.94
335 346 4.098349 GCATGGATGGTGAGCAATCTAAAA 59.902 41.667 0.00 0.00 0.00 1.52
336 347 3.633525 GCATGGATGGTGAGCAATCTAAA 59.366 43.478 0.00 0.00 0.00 1.85
337 348 3.117776 AGCATGGATGGTGAGCAATCTAA 60.118 43.478 0.00 0.00 37.10 2.10
338 349 2.440627 AGCATGGATGGTGAGCAATCTA 59.559 45.455 0.00 0.00 37.10 1.98
339 350 1.214673 AGCATGGATGGTGAGCAATCT 59.785 47.619 0.00 0.00 37.10 2.40
340 351 1.688772 AGCATGGATGGTGAGCAATC 58.311 50.000 0.00 0.00 37.10 2.67
341 352 3.918134 AGCATGGATGGTGAGCAAT 57.082 47.368 0.00 0.00 37.10 3.56
354 365 1.378882 CGGGTGGACCATTCAGCATG 61.379 60.000 0.00 0.00 40.22 4.06
355 366 1.077501 CGGGTGGACCATTCAGCAT 60.078 57.895 0.00 0.00 40.22 3.79
356 367 1.561769 ATCGGGTGGACCATTCAGCA 61.562 55.000 0.00 0.00 40.22 4.41
357 368 1.097547 CATCGGGTGGACCATTCAGC 61.098 60.000 0.00 0.00 40.22 4.26
358 369 3.085208 CATCGGGTGGACCATTCAG 57.915 57.895 0.00 0.00 40.22 3.02
368 379 6.253670 TAATCATCGATTCAACCATCGGGTG 61.254 44.000 0.00 0.00 45.16 4.61
369 380 4.202315 TAATCATCGATTCAACCATCGGGT 60.202 41.667 0.00 0.00 45.16 5.28
415 426 0.103937 GAACAGGGCGAGATCAGGAG 59.896 60.000 0.00 0.00 0.00 3.69
452 463 0.452987 CATGGTCAAGATGGGCAACG 59.547 55.000 0.00 0.00 37.60 4.10
480 491 0.666577 CCGAGTTCTTCCGCGACTTT 60.667 55.000 8.23 0.00 0.00 2.66
526 537 2.717044 CCACCAGGGCATACGTCGA 61.717 63.158 0.00 0.00 0.00 4.20
555 566 4.478371 TCCGACTCCGCGCTCCTA 62.478 66.667 5.56 0.00 0.00 2.94
744 755 3.284449 AACTTCACCGGCGCCAAC 61.284 61.111 28.98 0.00 0.00 3.77
755 766 0.034337 GGACCGGCTGTACAACTTCA 59.966 55.000 0.00 0.00 0.00 3.02
828 839 1.813859 CCTCGACGCCAAGGACATA 59.186 57.895 0.00 0.00 34.35 2.29
855 866 0.250513 GCCTCTCCAAGATGTTCGGT 59.749 55.000 0.00 0.00 0.00 4.69
856 867 0.807667 CGCCTCTCCAAGATGTTCGG 60.808 60.000 0.00 0.00 0.00 4.30
1029 1040 1.066858 CAGTCCGCATGTCCTAACACT 60.067 52.381 0.00 0.00 38.48 3.55
1038 1049 3.005539 AGGCTCCAGTCCGCATGT 61.006 61.111 0.00 0.00 0.00 3.21
1041 1052 3.695606 GACAGGCTCCAGTCCGCA 61.696 66.667 0.48 0.00 0.00 5.69
1126 1137 4.728102 CACCGACGCCGCCAGTAA 62.728 66.667 0.00 0.00 0.00 2.24
1135 1146 2.278013 GATCGACTCCACCGACGC 60.278 66.667 0.00 0.00 38.97 5.19
1259 1270 1.934220 GCACGTGGAGGAGATCGTCA 61.934 60.000 18.88 0.00 34.30 4.35
1372 1383 1.153862 GGTCTCTCAGCAGTCGCAG 60.154 63.158 0.00 0.00 42.27 5.18
1410 1421 1.898574 AACTTGCCAAGCCACTCCG 60.899 57.895 3.88 0.00 0.00 4.63
1416 1427 0.807496 CTCTAGCAACTTGCCAAGCC 59.193 55.000 10.25 0.00 46.52 4.35
1422 1433 0.107459 CTCCCCCTCTAGCAACTTGC 60.107 60.000 5.55 5.55 45.46 4.01
1423 1434 0.543749 CCTCCCCCTCTAGCAACTTG 59.456 60.000 0.00 0.00 0.00 3.16
1438 1452 1.134438 AAGTGACAACCTCCCCCTCC 61.134 60.000 0.00 0.00 0.00 4.30
1448 1462 1.798813 GCACACAGGCAAAGTGACAAC 60.799 52.381 10.94 0.00 40.16 3.32
1476 1494 3.118186 ACACTATATAAACCGGCTGCCAA 60.118 43.478 20.29 0.00 0.00 4.52
1481 1499 3.243636 CGTGGACACTATATAAACCGGCT 60.244 47.826 0.00 0.00 0.00 5.52
1500 1518 6.693315 AATCCCAATCCTAATTTGTACGTG 57.307 37.500 0.00 0.00 0.00 4.49
1503 1521 8.974060 TCACTAATCCCAATCCTAATTTGTAC 57.026 34.615 0.00 0.00 0.00 2.90
1534 1552 5.815740 ACCACTAAGAATACGCTAATTGTGG 59.184 40.000 0.00 0.00 44.54 4.17
1536 1554 7.064253 GTCAACCACTAAGAATACGCTAATTGT 59.936 37.037 0.00 0.00 0.00 2.71
1546 1564 4.242475 CTGCACGTCAACCACTAAGAATA 58.758 43.478 0.00 0.00 0.00 1.75
1547 1565 3.067106 CTGCACGTCAACCACTAAGAAT 58.933 45.455 0.00 0.00 0.00 2.40
1548 1566 2.159014 ACTGCACGTCAACCACTAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
1549 1567 1.411246 ACTGCACGTCAACCACTAAGA 59.589 47.619 0.00 0.00 0.00 2.10
1550 1568 1.526887 CACTGCACGTCAACCACTAAG 59.473 52.381 0.00 0.00 0.00 2.18
1551 1569 1.134640 ACACTGCACGTCAACCACTAA 60.135 47.619 0.00 0.00 0.00 2.24
1552 1570 0.462375 ACACTGCACGTCAACCACTA 59.538 50.000 0.00 0.00 0.00 2.74
1553 1571 0.462375 TACACTGCACGTCAACCACT 59.538 50.000 0.00 0.00 0.00 4.00
1554 1572 1.292061 TTACACTGCACGTCAACCAC 58.708 50.000 0.00 0.00 0.00 4.16
1555 1573 1.870402 CATTACACTGCACGTCAACCA 59.130 47.619 0.00 0.00 0.00 3.67
1556 1574 1.196808 CCATTACACTGCACGTCAACC 59.803 52.381 0.00 0.00 0.00 3.77
1557 1575 1.871039 ACCATTACACTGCACGTCAAC 59.129 47.619 0.00 0.00 0.00 3.18
1558 1576 2.248280 ACCATTACACTGCACGTCAA 57.752 45.000 0.00 0.00 0.00 3.18
1559 1577 2.297880 ACTACCATTACACTGCACGTCA 59.702 45.455 0.00 0.00 0.00 4.35
1560 1578 2.955614 ACTACCATTACACTGCACGTC 58.044 47.619 0.00 0.00 0.00 4.34
1561 1579 4.021719 ACTTACTACCATTACACTGCACGT 60.022 41.667 0.00 0.00 0.00 4.49
1562 1580 4.491676 ACTTACTACCATTACACTGCACG 58.508 43.478 0.00 0.00 0.00 5.34
1563 1581 5.514204 CGTACTTACTACCATTACACTGCAC 59.486 44.000 0.00 0.00 0.00 4.57
1564 1582 5.183713 ACGTACTTACTACCATTACACTGCA 59.816 40.000 0.00 0.00 0.00 4.41
1615 1633 2.933287 ATCCCCGGGCACAACTGA 60.933 61.111 17.73 5.18 0.00 3.41
1619 1637 0.626382 TTAATCATCCCCGGGCACAA 59.374 50.000 17.73 0.00 0.00 3.33
1622 1640 1.150536 GCTTAATCATCCCCGGGCA 59.849 57.895 17.73 0.00 0.00 5.36
1628 1646 4.270325 GTCAACGTACTGCTTAATCATCCC 59.730 45.833 0.00 0.00 0.00 3.85
1664 1682 4.202010 CGACCAAAGACACAAAAGGTTGAT 60.202 41.667 0.00 0.00 38.20 2.57
1679 1697 1.063469 GTGAACACACACCGACCAAAG 59.937 52.381 0.00 0.00 35.07 2.77
1748 1766 3.111853 TCATACCAATCACTGATCGGC 57.888 47.619 0.00 0.00 0.00 5.54
1818 1837 4.843220 AATGATCCCTCAAATGATTCGC 57.157 40.909 0.00 0.00 34.37 4.70
1819 1838 5.975344 CACAAATGATCCCTCAAATGATTCG 59.025 40.000 0.00 0.00 34.37 3.34
1878 1902 6.603599 AGAGGGACCAGATTAAAATTACTTGC 59.396 38.462 0.00 0.00 0.00 4.01
1879 1903 8.581253 AAGAGGGACCAGATTAAAATTACTTG 57.419 34.615 0.00 0.00 0.00 3.16
1892 1916 7.236847 TGAAAAGTTAAGATAAGAGGGACCAGA 59.763 37.037 0.00 0.00 0.00 3.86
1893 1917 7.334671 GTGAAAAGTTAAGATAAGAGGGACCAG 59.665 40.741 0.00 0.00 0.00 4.00
1946 1970 7.412063 GGTAAAATTAACGGCGTTGATCTATT 58.588 34.615 33.37 24.63 0.00 1.73
1947 1971 6.017687 GGGTAAAATTAACGGCGTTGATCTAT 60.018 38.462 33.37 20.80 0.00 1.98
1948 1972 5.294060 GGGTAAAATTAACGGCGTTGATCTA 59.706 40.000 33.37 21.12 0.00 1.98
1949 1973 4.095334 GGGTAAAATTAACGGCGTTGATCT 59.905 41.667 33.37 22.04 0.00 2.75
1950 1974 4.142643 TGGGTAAAATTAACGGCGTTGATC 60.143 41.667 33.37 18.21 0.00 2.92
1951 1975 3.757493 TGGGTAAAATTAACGGCGTTGAT 59.243 39.130 33.37 27.71 0.00 2.57
1952 1976 3.144506 TGGGTAAAATTAACGGCGTTGA 58.855 40.909 33.37 26.70 0.00 3.18
1953 1977 3.555917 TGGGTAAAATTAACGGCGTTG 57.444 42.857 33.37 0.00 0.00 4.10
1954 1978 4.581077 TTTGGGTAAAATTAACGGCGTT 57.419 36.364 29.36 29.36 0.00 4.84
1972 1996 5.686841 CCACACGTATGGCATTTATCATTTG 59.313 40.000 4.78 0.00 31.52 2.32
1982 2006 3.355816 CGTACCACACGTATGGCAT 57.644 52.632 14.10 4.88 45.82 4.40
1996 2020 2.738013 AGGGCAGTGTTACTTCGTAC 57.262 50.000 0.00 0.00 0.00 3.67
1997 2021 3.573538 TGTTAGGGCAGTGTTACTTCGTA 59.426 43.478 0.00 0.00 0.00 3.43
2048 2072 7.148255 GCAAGTTTCAGTTCTTTTGGGATTTTT 60.148 33.333 0.00 0.00 0.00 1.94
2049 2073 6.316140 GCAAGTTTCAGTTCTTTTGGGATTTT 59.684 34.615 0.00 0.00 0.00 1.82
2050 2074 5.817296 GCAAGTTTCAGTTCTTTTGGGATTT 59.183 36.000 0.00 0.00 0.00 2.17
2051 2075 5.359756 GCAAGTTTCAGTTCTTTTGGGATT 58.640 37.500 0.00 0.00 0.00 3.01
2052 2076 4.202253 GGCAAGTTTCAGTTCTTTTGGGAT 60.202 41.667 0.00 0.00 0.00 3.85
2053 2077 3.132111 GGCAAGTTTCAGTTCTTTTGGGA 59.868 43.478 0.00 0.00 0.00 4.37
2054 2078 3.118811 TGGCAAGTTTCAGTTCTTTTGGG 60.119 43.478 0.00 0.00 0.00 4.12
2055 2079 4.122143 TGGCAAGTTTCAGTTCTTTTGG 57.878 40.909 0.00 0.00 0.00 3.28
2056 2080 4.746611 GGATGGCAAGTTTCAGTTCTTTTG 59.253 41.667 0.00 0.00 0.00 2.44
2057 2081 4.405358 TGGATGGCAAGTTTCAGTTCTTTT 59.595 37.500 0.00 0.00 0.00 2.27
2058 2082 3.960102 TGGATGGCAAGTTTCAGTTCTTT 59.040 39.130 0.00 0.00 0.00 2.52
2059 2083 3.565307 TGGATGGCAAGTTTCAGTTCTT 58.435 40.909 0.00 0.00 0.00 2.52
2060 2084 3.228188 TGGATGGCAAGTTTCAGTTCT 57.772 42.857 0.00 0.00 0.00 3.01
2061 2085 4.051237 GTTTGGATGGCAAGTTTCAGTTC 58.949 43.478 0.00 0.00 0.00 3.01
2062 2086 3.450457 TGTTTGGATGGCAAGTTTCAGTT 59.550 39.130 0.00 0.00 0.00 3.16
2063 2087 3.030291 TGTTTGGATGGCAAGTTTCAGT 58.970 40.909 0.00 0.00 0.00 3.41
2064 2088 3.068590 ACTGTTTGGATGGCAAGTTTCAG 59.931 43.478 0.00 0.00 0.00 3.02
2065 2089 3.030291 ACTGTTTGGATGGCAAGTTTCA 58.970 40.909 0.00 0.00 0.00 2.69
2066 2090 3.733443 ACTGTTTGGATGGCAAGTTTC 57.267 42.857 0.00 0.00 0.00 2.78
2067 2091 4.649218 ACTTACTGTTTGGATGGCAAGTTT 59.351 37.500 0.00 0.00 0.00 2.66
2068 2092 4.215109 ACTTACTGTTTGGATGGCAAGTT 58.785 39.130 0.00 0.00 0.00 2.66
2069 2093 3.832527 ACTTACTGTTTGGATGGCAAGT 58.167 40.909 0.00 0.00 0.00 3.16
2070 2094 4.037923 ACAACTTACTGTTTGGATGGCAAG 59.962 41.667 0.00 0.00 36.63 4.01
2071 2095 3.957497 ACAACTTACTGTTTGGATGGCAA 59.043 39.130 0.00 0.00 36.63 4.52
2072 2096 3.561143 ACAACTTACTGTTTGGATGGCA 58.439 40.909 0.00 0.00 36.63 4.92
2073 2097 3.568007 TGACAACTTACTGTTTGGATGGC 59.432 43.478 0.00 0.00 36.63 4.40
2074 2098 5.964958 ATGACAACTTACTGTTTGGATGG 57.035 39.130 0.00 0.00 36.63 3.51
2075 2099 7.672983 AGTATGACAACTTACTGTTTGGATG 57.327 36.000 0.00 0.00 36.63 3.51
2076 2100 7.936847 TGAAGTATGACAACTTACTGTTTGGAT 59.063 33.333 0.00 0.00 39.78 3.41
2077 2101 7.276658 TGAAGTATGACAACTTACTGTTTGGA 58.723 34.615 0.00 0.00 39.78 3.53
2078 2102 7.490962 TGAAGTATGACAACTTACTGTTTGG 57.509 36.000 0.00 0.00 39.78 3.28
2079 2103 8.394877 TGTTGAAGTATGACAACTTACTGTTTG 58.605 33.333 0.00 0.00 44.25 2.93
2080 2104 8.395633 GTGTTGAAGTATGACAACTTACTGTTT 58.604 33.333 0.00 0.00 44.25 2.83
2081 2105 7.769044 AGTGTTGAAGTATGACAACTTACTGTT 59.231 33.333 0.00 0.00 44.25 3.16
2082 2106 7.272978 AGTGTTGAAGTATGACAACTTACTGT 58.727 34.615 0.00 0.00 44.25 3.55
2083 2107 7.715265 AGTGTTGAAGTATGACAACTTACTG 57.285 36.000 0.00 0.00 44.25 2.74
2084 2108 9.826574 TTTAGTGTTGAAGTATGACAACTTACT 57.173 29.630 0.00 0.00 44.25 2.24
2086 2110 9.826574 ACTTTAGTGTTGAAGTATGACAACTTA 57.173 29.630 0.00 0.00 44.25 2.24
2087 2111 8.732746 ACTTTAGTGTTGAAGTATGACAACTT 57.267 30.769 0.00 3.60 44.25 2.66
2088 2112 8.732746 AACTTTAGTGTTGAAGTATGACAACT 57.267 30.769 0.00 0.00 44.25 3.16
2127 2151 3.068729 GAAGCAATTCCGCCCTGGC 62.069 63.158 0.00 0.00 37.80 4.85
2128 2152 2.764314 CGAAGCAATTCCGCCCTGG 61.764 63.158 0.00 0.00 40.09 4.45
2129 2153 2.040544 ACGAAGCAATTCCGCCCTG 61.041 57.895 0.00 0.00 0.00 4.45
2130 2154 2.040544 CACGAAGCAATTCCGCCCT 61.041 57.895 0.00 0.00 0.00 5.19
2131 2155 2.485122 CACGAAGCAATTCCGCCC 59.515 61.111 0.00 0.00 0.00 6.13
2132 2156 2.202479 GCACGAAGCAATTCCGCC 60.202 61.111 0.00 0.00 44.79 6.13
2150 2174 1.288419 TGATAAGTGCCGCGTGTGTG 61.288 55.000 4.92 0.00 0.00 3.82
2151 2175 0.601576 TTGATAAGTGCCGCGTGTGT 60.602 50.000 4.92 0.00 0.00 3.72
2152 2176 0.095245 CTTGATAAGTGCCGCGTGTG 59.905 55.000 4.92 0.00 0.00 3.82
2153 2177 1.019278 CCTTGATAAGTGCCGCGTGT 61.019 55.000 4.92 0.00 0.00 4.49
2154 2178 1.019278 ACCTTGATAAGTGCCGCGTG 61.019 55.000 4.92 0.00 0.00 5.34
2155 2179 0.739813 GACCTTGATAAGTGCCGCGT 60.740 55.000 4.92 0.00 0.00 6.01
2156 2180 1.429148 GGACCTTGATAAGTGCCGCG 61.429 60.000 0.00 0.00 0.00 6.46
2157 2181 0.107654 AGGACCTTGATAAGTGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
2158 2182 3.536956 TTAGGACCTTGATAAGTGCCG 57.463 47.619 0.00 0.00 0.00 5.69
2159 2183 6.775594 AAAATTAGGACCTTGATAAGTGCC 57.224 37.500 0.00 0.00 0.00 5.01
2168 2192 9.338622 CCACTACCTAATAAAATTAGGACCTTG 57.661 37.037 25.42 17.04 43.24 3.61
2169 2193 8.500238 CCCACTACCTAATAAAATTAGGACCTT 58.500 37.037 25.42 10.72 43.24 3.50
2170 2194 7.630534 ACCCACTACCTAATAAAATTAGGACCT 59.369 37.037 25.42 11.00 43.24 3.85
2171 2195 7.809238 ACCCACTACCTAATAAAATTAGGACC 58.191 38.462 25.42 0.00 43.24 4.46
2172 2196 9.117183 CAACCCACTACCTAATAAAATTAGGAC 57.883 37.037 25.42 0.00 43.24 3.85
2173 2197 9.060137 TCAACCCACTACCTAATAAAATTAGGA 57.940 33.333 25.42 12.42 43.24 2.94
2174 2198 9.338622 CTCAACCCACTACCTAATAAAATTAGG 57.661 37.037 19.57 19.57 45.41 2.69
2175 2199 9.901172 ACTCAACCCACTACCTAATAAAATTAG 57.099 33.333 0.56 0.56 0.00 1.73
2178 2202 9.676861 GTTACTCAACCCACTACCTAATAAAAT 57.323 33.333 0.00 0.00 0.00 1.82
2179 2203 8.883302 AGTTACTCAACCCACTACCTAATAAAA 58.117 33.333 0.00 0.00 35.05 1.52
2180 2204 8.439964 AGTTACTCAACCCACTACCTAATAAA 57.560 34.615 0.00 0.00 35.05 1.40
2181 2205 7.897565 AGAGTTACTCAACCCACTACCTAATAA 59.102 37.037 15.23 0.00 35.05 1.40
2182 2206 7.416731 AGAGTTACTCAACCCACTACCTAATA 58.583 38.462 15.23 0.00 35.05 0.98
2183 2207 6.262207 AGAGTTACTCAACCCACTACCTAAT 58.738 40.000 15.23 0.00 35.05 1.73
2184 2208 5.648247 AGAGTTACTCAACCCACTACCTAA 58.352 41.667 15.23 0.00 35.05 2.69
2185 2209 5.266709 AGAGTTACTCAACCCACTACCTA 57.733 43.478 15.23 0.00 35.05 3.08
2186 2210 4.129317 AGAGTTACTCAACCCACTACCT 57.871 45.455 15.23 0.00 35.05 3.08
2187 2211 4.886496 AAGAGTTACTCAACCCACTACC 57.114 45.455 15.23 0.00 35.05 3.18
2188 2212 5.479724 AGGTAAGAGTTACTCAACCCACTAC 59.520 44.000 24.07 10.66 38.64 2.73
2189 2213 5.648247 AGGTAAGAGTTACTCAACCCACTA 58.352 41.667 24.07 1.66 38.64 2.74
2190 2214 4.490706 AGGTAAGAGTTACTCAACCCACT 58.509 43.478 24.07 10.57 38.64 4.00
2191 2215 4.322574 GGAGGTAAGAGTTACTCAACCCAC 60.323 50.000 24.07 19.54 38.64 4.61
2192 2216 3.836562 GGAGGTAAGAGTTACTCAACCCA 59.163 47.826 24.07 1.62 38.64 4.51
2193 2217 3.836562 TGGAGGTAAGAGTTACTCAACCC 59.163 47.826 24.07 17.85 38.64 4.11
2194 2218 5.236282 GTTGGAGGTAAGAGTTACTCAACC 58.764 45.833 21.76 21.76 38.35 3.77
2195 2219 5.221581 TGGTTGGAGGTAAGAGTTACTCAAC 60.222 44.000 15.23 11.53 38.74 3.18
2196 2220 4.903049 TGGTTGGAGGTAAGAGTTACTCAA 59.097 41.667 15.23 0.00 36.39 3.02
2197 2221 4.485875 TGGTTGGAGGTAAGAGTTACTCA 58.514 43.478 15.23 0.00 36.39 3.41
2198 2222 5.479124 TTGGTTGGAGGTAAGAGTTACTC 57.521 43.478 3.85 3.85 36.39 2.59
2199 2223 6.449830 AATTGGTTGGAGGTAAGAGTTACT 57.550 37.500 0.00 0.00 36.39 2.24
2200 2224 6.489022 ACAAATTGGTTGGAGGTAAGAGTTAC 59.511 38.462 0.00 0.00 41.97 2.50
2201 2225 6.607019 ACAAATTGGTTGGAGGTAAGAGTTA 58.393 36.000 0.00 0.00 41.97 2.24
2202 2226 5.454966 ACAAATTGGTTGGAGGTAAGAGTT 58.545 37.500 0.00 0.00 41.97 3.01
2203 2227 5.061721 ACAAATTGGTTGGAGGTAAGAGT 57.938 39.130 0.00 0.00 41.97 3.24
2204 2228 7.148069 GGATTACAAATTGGTTGGAGGTAAGAG 60.148 40.741 0.00 0.00 41.97 2.85
2205 2229 6.661805 GGATTACAAATTGGTTGGAGGTAAGA 59.338 38.462 0.00 0.00 41.97 2.10
2206 2230 6.435904 TGGATTACAAATTGGTTGGAGGTAAG 59.564 38.462 0.00 0.00 41.97 2.34
2207 2231 6.209788 GTGGATTACAAATTGGTTGGAGGTAA 59.790 38.462 0.00 0.00 41.97 2.85
2208 2232 5.712917 GTGGATTACAAATTGGTTGGAGGTA 59.287 40.000 0.00 0.00 41.97 3.08
2209 2233 4.526650 GTGGATTACAAATTGGTTGGAGGT 59.473 41.667 0.00 0.00 41.97 3.85
2210 2234 4.081697 GGTGGATTACAAATTGGTTGGAGG 60.082 45.833 0.00 0.00 41.97 4.30
2211 2235 4.081697 GGGTGGATTACAAATTGGTTGGAG 60.082 45.833 0.00 0.00 41.97 3.86
2212 2236 3.835395 GGGTGGATTACAAATTGGTTGGA 59.165 43.478 0.00 0.00 41.97 3.53
2213 2237 3.367910 CGGGTGGATTACAAATTGGTTGG 60.368 47.826 0.00 0.00 41.97 3.77
2214 2238 3.843999 CGGGTGGATTACAAATTGGTTG 58.156 45.455 0.00 0.00 43.43 3.77
2215 2239 2.232696 GCGGGTGGATTACAAATTGGTT 59.767 45.455 0.00 0.00 0.00 3.67
2216 2240 1.822371 GCGGGTGGATTACAAATTGGT 59.178 47.619 0.00 0.00 0.00 3.67
2217 2241 2.099405 AGCGGGTGGATTACAAATTGG 58.901 47.619 0.00 0.00 0.00 3.16
2218 2242 3.945285 ACTAGCGGGTGGATTACAAATTG 59.055 43.478 0.00 0.00 0.00 2.32
2219 2243 4.230745 ACTAGCGGGTGGATTACAAATT 57.769 40.909 0.00 0.00 0.00 1.82
2220 2244 3.926058 ACTAGCGGGTGGATTACAAAT 57.074 42.857 0.00 0.00 0.00 2.32
2221 2245 3.706600 AACTAGCGGGTGGATTACAAA 57.293 42.857 0.00 0.00 0.00 2.83
2222 2246 4.822685 TTAACTAGCGGGTGGATTACAA 57.177 40.909 0.00 0.00 0.00 2.41
2223 2247 4.822685 TTTAACTAGCGGGTGGATTACA 57.177 40.909 0.00 0.00 0.00 2.41
2224 2248 4.446719 CGATTTAACTAGCGGGTGGATTAC 59.553 45.833 0.00 0.00 0.00 1.89
2225 2249 4.341806 TCGATTTAACTAGCGGGTGGATTA 59.658 41.667 0.00 0.00 0.00 1.75
2226 2250 3.133362 TCGATTTAACTAGCGGGTGGATT 59.867 43.478 0.00 0.00 0.00 3.01
2227 2251 2.696707 TCGATTTAACTAGCGGGTGGAT 59.303 45.455 0.00 0.00 0.00 3.41
2228 2252 2.101783 TCGATTTAACTAGCGGGTGGA 58.898 47.619 0.00 0.00 0.00 4.02
2229 2253 2.589798 TCGATTTAACTAGCGGGTGG 57.410 50.000 0.00 0.00 0.00 4.61
2230 2254 4.868067 AGTATCGATTTAACTAGCGGGTG 58.132 43.478 1.71 0.00 0.00 4.61
2231 2255 5.334414 CGTAGTATCGATTTAACTAGCGGGT 60.334 44.000 1.71 0.00 0.00 5.28
2232 2256 5.084722 CGTAGTATCGATTTAACTAGCGGG 58.915 45.833 1.71 0.00 0.00 6.13
2233 2257 5.920312 TCGTAGTATCGATTTAACTAGCGG 58.080 41.667 1.71 0.00 34.85 5.52
2244 2268 4.849074 GCACTCTGCAATCGTAGTATCGAT 60.849 45.833 2.16 2.16 44.26 3.59
2245 2269 3.548214 GCACTCTGCAATCGTAGTATCGA 60.548 47.826 0.00 0.00 44.26 3.59
2246 2270 2.721603 GCACTCTGCAATCGTAGTATCG 59.278 50.000 0.00 0.00 44.26 2.92
2259 2283 3.070018 ACTATCTTGTGTTGCACTCTGC 58.930 45.455 0.00 0.00 45.29 4.26
2260 2284 4.328440 GCTACTATCTTGTGTTGCACTCTG 59.672 45.833 0.00 0.00 35.61 3.35
2261 2285 4.221703 AGCTACTATCTTGTGTTGCACTCT 59.778 41.667 0.00 0.00 37.38 3.24
2262 2286 4.499183 AGCTACTATCTTGTGTTGCACTC 58.501 43.478 0.00 0.00 37.38 3.51
2263 2287 4.543590 AGCTACTATCTTGTGTTGCACT 57.456 40.909 0.00 0.00 37.38 4.40
2264 2288 4.268884 GCTAGCTACTATCTTGTGTTGCAC 59.731 45.833 7.70 0.00 37.38 4.57
2265 2289 4.160439 AGCTAGCTACTATCTTGTGTTGCA 59.840 41.667 17.69 0.00 37.38 4.08
2266 2290 4.688021 AGCTAGCTACTATCTTGTGTTGC 58.312 43.478 17.69 0.00 35.73 4.17
2267 2291 7.976734 AGTTTAGCTAGCTACTATCTTGTGTTG 59.023 37.037 24.09 0.00 0.00 3.33
2268 2292 8.068892 AGTTTAGCTAGCTACTATCTTGTGTT 57.931 34.615 24.09 0.00 0.00 3.32
2269 2293 7.648039 AGTTTAGCTAGCTACTATCTTGTGT 57.352 36.000 24.09 0.00 0.00 3.72
2270 2294 8.934507 AAAGTTTAGCTAGCTACTATCTTGTG 57.065 34.615 24.09 0.00 0.00 3.33



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.