>input_sequence_84598
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--------------------------------------------------ATGAGGGCGAGCACGTCGGCGCAGGACACA
GTGTTAGGACATGCGGACTGGAGCCTGTCCTTGACGCGCTGCACGGCGCCGAAGCCGCGGAGGCTCTTGTTGGGCGGCGC
GTCCTTCTCTGCCGGGTTACTGGCGGCGTCGGTGGAGTCGATCAGCACGGAAGCGTCGCATCCCCGGACGAAGCAGTCGT
GGAAGTGGAGGCGGAGGAAGGGTCCGGCGAGCGTGGGCGCCTCCTTGAGGATCCCGAGCATCTCCTGCCTGACGATCTCC
TCCACGTGCGGGCACGTCTTGCTGTAG-----------------------------------------------------
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>chr2D_1_TraesCS2D01G265200
AAGGAATTACTAGTTCCTTCGAAGGTGTCATCCTTGATAACTACGAGAAAATGTTTATTTCGTTA----CATCGTTATCG
TTACATGATGCCAATACATGATGAACTGAAC-ACCCCCTTAAAATGGAAATAAAAACAAGAAATAAAGCGGCA-TCTTCA
ATCAATATCAGTTACAAACATACTAGCCACCAGTGAATACACCGATAAAAGAAATATATGCGTGTAAATATATCACGGGT
CAAGTTAATTAAGCACGATTATATGTATGTACGAACGAATGCAAT----CAAGCAAGCAATCAAAGTAGCGAGTTAACCA
TGCACTTTGCAGCATCCAAGGTTTTTTTTAGATTGCTCACCATCCATGCTGAATGGTCCACCCGATGGTTGAATCGATGA
TTATTTGTTGACGGCGTAGCACTTGCTCCTGATCTCGCCCTGTTCTCCGGTGAGCACGCCGACGTTGCCCATCTTGACCA
TGGACTCGGCAAAGTCGCGGAAGAACTCGGCGGCGAAGAGGCCGGTGGCCTGGCGCTCGACGTATGCCCTGGTGGTCGGG
TGTTCTAGGAGCGCGGAGTCGGAGTGTAGGATTCCTCTGCGCTTTGCCACGAGGCGGTAGTAGCCGGCGTCGAAGGTGAG
GAAGCTGCCGGGGTCCATCTCCGCGAGCGTGGTGTTGTCGGCGAGGCTCCGGCACTGGGACCTCAGCCTGGCCACGTATG
CGGCGTCCAGTGCTGGGTCGACGTCGGCGGGGTTGTTGGCGCCGGTGAAGTTGTACAGCCGGTCCGTGAAGGACACGCAG
CGCGCGGTGCCGAGCGTGTGGCCGCCGGAGAGCACGACTATGTCCTTGGCGTCGAGGCCCTTGGCACCGAACATCTTGGA
GAGGCGGGTGAAGTTGGAGGTGGGTGGGGGAAGCTGGTTTGTCTCGTTAGCGATGGACACGCGGCCGTCCCTCCGTCCGA
GCGCGACGGGCCACGTGGGGCCTCCTGCGAGTACGACGGCGTCGCGGGCCATGAGGGCGAGCACGTCGGCGCAGGACACA
GTGTTAGGACATGCGGACTGGAGCCTGTCCTTGACGCGCTGCACGGCGCCGAAGCCGCGGAGGCTCTTGTTGGGCGGCGC
GTCCTTCTCTGCCGGGTTACTGGCGGCGTCGGTGGAGTCGATCAGCACGGAAGCGTCGCATCCCCGGACGAAGCAGTCGT
GGAAGTGGAGGCGGAGGAAGGGTCCGGCGAGCGTGGGCGCCTCCTTGAGGATCCCGAGCATCTCCTGCCTGACGATCTCC
TCCACGTGCGGGCACGTCTTGCTGTAGAAGCCCACGCCCAGCTGAGCCACGGCGGAGGCCGTAGACAACAGCAGGAGCAG
CGCGCCGGCCAGCATTGCGCCGCTGCGACTGCTGAGAGACCTTGAGGAGGCCATGGTTGCCGGAGTGGCTTGGCAAGTT-
--GCTAGAGGGGGAGGGGGAGGTTGTCACTT----TGCCTGTGTGCCTCCGGGTTGGCAGCCGGTTTATATAGTGTCCAC
GTACAAATTAGGATTGGGATTAGTGAAGAGTCCACAATTAGCGTATTCTTAGTGGTTGACGTGCAGTGTAATGGTAGTAA
GTACGTAGGGCATGCAGCTTTGTATGGCTGGTTCAGTTGTGCCCGGGGATGATTAAGCAGTACGTTGACGTCTACTGTTT
CATCAACCTTTTGTGTCTTTGGTCGGTGTGTGTTCACCTGTCACACGTTGGACCTTGCTACGTACCTAGCTAAGCACACT
GAAGTGC-CGATCAGTGATTGGTATGAACATACCATCGATTATTCAATTCTTGTAGGAATGTGTTGGGAAGGCGCCGC--
---GAATCATTTGAGGGATCATTTGTGGTAAGAGGTAACTAACTGGAATTATTACTTTAGTGCAAGTAATTTTAATCTGG
TCCCTCTTATCTTAACTTTTCACATAAGAGGTAAGAGTAATACTCATATAATAGATCAACGCCGTTAATTTTACCCAAAT
GATAAATGCCATACGTGTGGTACGAAGTAACACTGCCCTAACATTTTTTAATTAAAGTTGCCATTCAAAAAAAAAATCCC
AAAAGAACTGAAACTTGCCATCCAAACAGTAAGTTGTCATACTTCAACACTAAAGTTGCCATCAAAAAACGCCAGGGCGG
AATTGCTTCGTGCCACACACGCGGCACTTATCAAGGTCCTAATTTTATTAGGTAGTGGGTTGAGTAACTCTTACCTCCAA
CCAATTTGTAATCCACCCGCTAGTTAAATCGATACTACGATTGCAGAGTGCAACACAAGATAGTAGCTAGCTAAACTTTA
>chr2B_42
-----------------------------------------TACGAGAAAATGTTTATTAATTTCGTTGCATCGTTACCG
TTACATGATGCCAATACATGATGAACTGAAAAACCCCCTTAAAATGGAAATAAAAACAAGAAATTAAGCGGCACTCTACA
ATCAATATCAGTTACAAACA---TAGCCACCAGTGAATACACCGATAAAAGAAATAAGTGCGCGTAAATATATGACAGGT
CAAGTTAATTAACCACGATTATA----TGTATGAACCAATGCAATCAAGCAAGCAAGCAATCATAGTACCGAGTTAACCA
TGCATGCACTTTGCACTAC-----------------------------------------CCCGATGGTTGAATCGATGA
TTATTTGTTGACGGCGTAGCACTTGTTCCTGATCTCGCCCTGTTCTCCGGTGAGCACGCCGATGTTGCCCATCTTGACCA
TGGACTCGGCGAAGTCGCGGAAGAACTCGGCGGCGAAGAGGCCGGTGGCCTGGCGCCCGACGTATGCCCTGGTGGTCGGG
TGTTCCAGGAGCGCGGAGTCGGAGTGTAGGATTCCTCTGCGCTTTGCCACGAGGCGGTAGTAGCCGGCGTCGAAGGTGAG
GAAGCTGCCGGGGTCCATCTCCGCGAGCGTGGTGTTGTCGGCGAGGCTCCGGCACTGGGACCTCAGCCTGGCCACGTATG
CGCCGTCCAGTGCTGGGTCGACGTCGGCGGGGTTATTGGCGCCGGAGAAGTTGTACAGCCGGTCCGTGAAGGAGACGCAG
CGCGCGGTGCCGAGCGTGTGGCCGCCGGAGAGCACGACGATATCCTTGGCGTCGAGGCCCTTGGCGGCGAACATCTTGGA
GAGGCGGGTGAAGTTGGAGGTGGGTGGGGGAAGCTGGTTCGTCTCGCTAGCGATGGACACGCGGCCGTCCCTCCGGCCGA
GCGCGACGGGCCACGTGGGGCCTCCTGCGAGCACGACGGCGTCGCGGGCCATGAGGGCGAGCACGTCGGCGCAGGACACC
GTGTTAGGGCAGGCGGACTGGAGCCTGTCCTTGACGCGCTGCACGGCGCCGAAGCCGCGGAGGCTCTTGTTGGGCGGCGC
GTCCTTCTCTGCTGGGCTATTGGCGACGTCGGTGGAGTCGATCAGCACGGAGGCGTCGCATCCCCGGACGAAGCAGTCGT
GGAAGTGGAGGCGGAGGAAGGGTCCGGCGAGCGTGGGCGCCTCCTTGAGGATCCCGAGCATCTCCTGCCGGACGATCTCC
TCCACGTGCGGGCACGTCTTGCTGTAGAAGCCCACGTCCAGCTGAGCCACGGCGGAGGCCGTAGACAACAGCAGGAGCAA
CGCGCCGGCCAGCATTGCGCCGATGCGACTGCTGAGAGACCTTGAGGAGGCCATGGTCGCTGGAGTTGCTTGCTAAGTTA
TGGCTAGAGGGAGAGGGGGAGATTGTTACTTGGGATGCCTGTATGCCTCCGGGATGGCCGCCGCTTTATATAGTGTCTAC
CTACAAATTAGGATTGGGATTAGTGAAGAGTTCGCAATTAGCGC------------------GCAGTGTAATGGTAGTAA
GTACGTAGGGCATGCAGCTTTGTATGGCTGGTCCAGCTGCGCCCGCGGATGATTAAGCAGTACGTTGACGTCTACTGTTT
CGTCAACCTTTTGTGTGTTTGGTCGGTGTGTGTTCACCTGTCACACGTTGGACCTTGCTACGTACCTAGCTAAGCACACT
GAAGTCCGCGATCAGTGATTGGTATGAATATACCATCGATTATTCAATTCTTGTAGGAATGTGTTGGGAAGGCGCCCTTG
TAGGAATCATTTGAGGGATCATTTGTCGTAAGAGGTAACTAACTGGAA--------TTAGTCTAAGTAATTTTAACATGG
TCCGTC-TATATTAACTTTTCACATGAGAGATAAGAGTAATACTCATCT---------ACGCCATTAATTTTACCTAAAT
GATAAGTGCCACACGTGTGACACGAAGTAATAC-----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SSS--S------------S--
------------------------------S---------------------------------S------------S--
--------------------SSS---------------------------------SS----S----------S--S---
------------S----------SSSS----S----S--------------------------S----S-----------
----SSSSSSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
-------------------------S------------------------------------S-----------------
----------S---------------------------------------------S-----------------------
-----S--------------------------------------------------------------------------
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--S-------------------------------S----------S---------------------------S------
--------------------------------------S--S-----------------------SS-------------
---------------------------------------S------S----------------------------S----
-------------------------------S-----------------------------------------------S
--------S--S--------------------------------------------------------------------
------------S---S--S-----S-------------------------S----------------------------
---------------------------------------------------------------------S----------
------------------------------------S------------------------------------------S
----------------------S----------------------------------S--S-----S-----SS------
-----------S---------S----S---------------S----------S----S----S-------------S--
S------------------------------S-S---------SSSSSSSSSSSSSSSSSSS------------------
--------------------------------S---S--S-----S----------------------------------
-S--------------S---------------------------------------------------------------
-----S----------------------S-----------------------------------------------SS--
--------------------------S---------------------SSSSSSSS-----SS------------SS---
---S--S---S--------------S----S----------------S-SSSSSSSSS-----S-----------S----
-----S-----S-------SS---------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_927
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---------------------------GGGAAGCTGGTTTGTCTCGT---------------------------------
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>reverse_2176
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---------------CACACGCGGCACTTATCAAG---------------------------------------------
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