Multiple sequence alignment - TraesCS2D01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G257000 chr2D 100.000 3071 0 0 1 3071 312065329 312062259 0.000000e+00 5672.0
1 TraesCS2D01G257000 chr2D 92.593 108 6 2 1 107 271435666 271435560 1.470000e-33 154.0
2 TraesCS2D01G257000 chr2D 84.000 175 11 6 753 912 617179229 617179057 5.300000e-33 152.0
3 TraesCS2D01G257000 chr2D 88.235 68 6 2 222 288 76587904 76587970 2.540000e-11 80.5
4 TraesCS2D01G257000 chr2B 97.285 2173 44 3 912 3071 379832256 379834426 0.000000e+00 3672.0
5 TraesCS2D01G257000 chr2B 87.685 406 38 9 113 513 379831867 379832265 2.160000e-126 462.0
6 TraesCS2D01G257000 chr2B 92.593 108 7 1 1 107 781641973 781641866 1.470000e-33 154.0
7 TraesCS2D01G257000 chr2A 97.101 1311 32 3 912 2219 425809323 425810630 0.000000e+00 2206.0
8 TraesCS2D01G257000 chr2A 84.767 407 38 15 112 513 425808945 425809332 1.340000e-103 387.0
9 TraesCS2D01G257000 chr2A 83.215 423 45 13 514 912 105414591 105414171 6.260000e-97 364.0
10 TraesCS2D01G257000 chr2A 90.698 172 5 1 2484 2644 425810749 425810920 5.160000e-53 219.0
11 TraesCS2D01G257000 chr2A 80.531 226 30 6 676 887 532049121 532049346 8.810000e-36 161.0
12 TraesCS2D01G257000 chr2A 85.119 168 10 6 2863 3030 425845050 425845202 1.140000e-34 158.0
13 TraesCS2D01G257000 chr3D 83.452 423 46 11 512 912 310908713 310908293 3.740000e-99 372.0
14 TraesCS2D01G257000 chr3D 91.304 115 6 4 1 113 348650463 348650575 1.470000e-33 154.0
15 TraesCS2D01G257000 chr3D 96.970 33 1 0 421 453 15903443 15903411 4.280000e-04 56.5
16 TraesCS2D01G257000 chr5D 83.373 421 47 11 514 912 423244539 423244120 4.840000e-98 368.0
17 TraesCS2D01G257000 chr5D 79.733 375 39 18 513 866 498107521 498107879 1.420000e-58 237.0
18 TraesCS2D01G257000 chr1A 82.679 433 43 17 509 913 569201459 569201887 3.770000e-94 355.0
19 TraesCS2D01G257000 chr7D 82.938 422 43 12 514 913 353804083 353803669 1.350000e-93 353.0
20 TraesCS2D01G257000 chr7D 95.146 103 4 1 1 102 164664180 164664282 8.810000e-36 161.0
21 TraesCS2D01G257000 chr7D 84.568 162 23 2 233 393 173900777 173900937 3.170000e-35 159.0
22 TraesCS2D01G257000 chr6D 82.629 426 48 14 510 912 18859403 18859825 1.350000e-93 353.0
23 TraesCS2D01G257000 chr6D 84.932 146 13 7 1 138 157369267 157369411 4.130000e-29 139.0
24 TraesCS2D01G257000 chr6A 82.464 422 49 14 514 912 54498524 54498943 2.270000e-91 346.0
25 TraesCS2D01G257000 chr6A 100.000 28 0 0 418 445 91843720 91843693 6.000000e-03 52.8
26 TraesCS2D01G257000 chr7A 83.421 380 37 13 516 873 32934706 32935081 2.280000e-86 329.0
27 TraesCS2D01G257000 chr7A 94.393 107 3 2 112 215 60171748 60171642 8.810000e-36 161.0
28 TraesCS2D01G257000 chr3A 82.486 354 28 17 586 912 735257624 735257970 2.330000e-71 279.0
29 TraesCS2D01G257000 chr7B 78.316 392 61 16 515 888 61064054 61064439 6.620000e-57 231.0
30 TraesCS2D01G257000 chr7B 94.393 107 3 1 112 215 716781625 716781731 8.810000e-36 161.0
31 TraesCS2D01G257000 chr7B 94.393 107 3 1 112 215 742951720 742951614 8.810000e-36 161.0
32 TraesCS2D01G257000 chr7B 91.150 113 9 1 1 112 318967774 318967886 5.300000e-33 152.0
33 TraesCS2D01G257000 chr6B 76.944 373 61 15 514 868 128729833 128730198 4.040000e-44 189.0
34 TraesCS2D01G257000 chr6B 94.393 107 3 1 112 215 388231611 388231505 8.810000e-36 161.0
35 TraesCS2D01G257000 chr6B 92.661 109 5 3 1 107 646512341 646512234 1.470000e-33 154.0
36 TraesCS2D01G257000 chrUn 94.393 107 3 1 112 215 182451905 182452011 8.810000e-36 161.0
37 TraesCS2D01G257000 chr5B 94.393 107 3 1 112 215 567244108 567244002 8.810000e-36 161.0
38 TraesCS2D01G257000 chr5B 92.035 113 6 2 1 112 171194138 171194028 4.100000e-34 156.0
39 TraesCS2D01G257000 chr5A 94.393 107 3 1 112 215 420182721 420182827 8.810000e-36 161.0
40 TraesCS2D01G257000 chr3B 95.050 101 4 1 1 100 622154138 622154238 1.140000e-34 158.0
41 TraesCS2D01G257000 chr4B 79.186 221 34 11 222 440 107666617 107666827 3.190000e-30 143.0
42 TraesCS2D01G257000 chr1D 87.719 114 11 3 216 328 252487672 252487561 2.490000e-26 130.0
43 TraesCS2D01G257000 chr1D 77.273 220 38 9 224 440 383169609 383169399 5.380000e-23 119.0
44 TraesCS2D01G257000 chr1D 100.000 28 0 0 217 244 488719331 488719358 6.000000e-03 52.8
45 TraesCS2D01G257000 chr1B 81.507 146 19 8 226 369 589771257 589771118 2.500000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G257000 chr2D 312062259 312065329 3070 True 5672.000000 5672 100.000000 1 3071 1 chr2D.!!$R2 3070
1 TraesCS2D01G257000 chr2B 379831867 379834426 2559 False 2067.000000 3672 92.485000 113 3071 2 chr2B.!!$F1 2958
2 TraesCS2D01G257000 chr2A 425808945 425810920 1975 False 937.333333 2206 90.855333 112 2644 3 chr2A.!!$F3 2532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 905 0.037734 TCGGGAGTACACTGAGAGCA 59.962 55.0 0.0 0.0 0.0 4.26 F
898 906 0.171455 CGGGAGTACACTGAGAGCAC 59.829 60.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1889 0.759346 ACTCAAGGAAAGACCGCACT 59.241 50.000 0.0 0.0 44.74 4.40 R
2113 2124 1.691823 CCCCTCCCCCTTTCTGAAC 59.308 63.158 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.729227 TGTGTCTAGAGTTGTGTTGTGA 57.271 40.909 0.00 0.00 0.00 3.58
22 23 5.276461 TGTGTCTAGAGTTGTGTTGTGAT 57.724 39.130 0.00 0.00 0.00 3.06
23 24 6.399639 TGTGTCTAGAGTTGTGTTGTGATA 57.600 37.500 0.00 0.00 0.00 2.15
24 25 6.993079 TGTGTCTAGAGTTGTGTTGTGATAT 58.007 36.000 0.00 0.00 0.00 1.63
25 26 7.090808 TGTGTCTAGAGTTGTGTTGTGATATC 58.909 38.462 0.00 0.00 0.00 1.63
26 27 7.039714 TGTGTCTAGAGTTGTGTTGTGATATCT 60.040 37.037 3.98 0.00 0.00 1.98
27 28 7.815068 GTGTCTAGAGTTGTGTTGTGATATCTT 59.185 37.037 3.98 0.00 0.00 2.40
28 29 8.029522 TGTCTAGAGTTGTGTTGTGATATCTTC 58.970 37.037 3.98 0.00 0.00 2.87
29 30 8.247562 GTCTAGAGTTGTGTTGTGATATCTTCT 58.752 37.037 3.98 0.00 0.00 2.85
30 31 8.462811 TCTAGAGTTGTGTTGTGATATCTTCTC 58.537 37.037 3.98 0.00 0.00 2.87
31 32 6.997655 AGAGTTGTGTTGTGATATCTTCTCA 58.002 36.000 3.98 0.00 0.00 3.27
32 33 7.619050 AGAGTTGTGTTGTGATATCTTCTCAT 58.381 34.615 3.98 0.00 0.00 2.90
33 34 7.548427 AGAGTTGTGTTGTGATATCTTCTCATG 59.452 37.037 3.98 0.00 0.00 3.07
34 35 7.389232 AGTTGTGTTGTGATATCTTCTCATGA 58.611 34.615 3.98 0.00 0.00 3.07
35 36 7.548427 AGTTGTGTTGTGATATCTTCTCATGAG 59.452 37.037 17.07 17.07 0.00 2.90
36 37 6.939622 TGTGTTGTGATATCTTCTCATGAGT 58.060 36.000 21.92 5.72 0.00 3.41
37 38 7.038048 TGTGTTGTGATATCTTCTCATGAGTC 58.962 38.462 21.92 11.61 0.00 3.36
38 39 6.478344 GTGTTGTGATATCTTCTCATGAGTCC 59.522 42.308 21.92 6.48 0.00 3.85
39 40 6.382282 TGTTGTGATATCTTCTCATGAGTCCT 59.618 38.462 21.92 8.50 0.00 3.85
40 41 6.402456 TGTGATATCTTCTCATGAGTCCTG 57.598 41.667 21.92 10.73 0.00 3.86
41 42 5.303845 TGTGATATCTTCTCATGAGTCCTGG 59.696 44.000 21.92 9.12 0.00 4.45
42 43 5.304101 GTGATATCTTCTCATGAGTCCTGGT 59.696 44.000 21.92 9.63 0.00 4.00
43 44 5.538053 TGATATCTTCTCATGAGTCCTGGTC 59.462 44.000 21.92 14.41 0.00 4.02
44 45 3.464720 TCTTCTCATGAGTCCTGGTCT 57.535 47.619 21.92 0.00 0.00 3.85
45 46 3.784178 TCTTCTCATGAGTCCTGGTCTT 58.216 45.455 21.92 0.00 0.00 3.01
46 47 3.513119 TCTTCTCATGAGTCCTGGTCTTG 59.487 47.826 21.92 0.00 0.00 3.02
47 48 3.175438 TCTCATGAGTCCTGGTCTTGA 57.825 47.619 21.92 0.00 0.00 3.02
48 49 3.717576 TCTCATGAGTCCTGGTCTTGAT 58.282 45.455 21.92 0.00 30.25 2.57
49 50 3.703556 TCTCATGAGTCCTGGTCTTGATC 59.296 47.826 21.92 0.00 30.25 2.92
50 51 2.428530 TCATGAGTCCTGGTCTTGATCG 59.571 50.000 0.00 0.00 0.00 3.69
51 52 1.924731 TGAGTCCTGGTCTTGATCGT 58.075 50.000 0.00 0.00 0.00 3.73
52 53 3.081710 TGAGTCCTGGTCTTGATCGTA 57.918 47.619 0.00 0.00 0.00 3.43
53 54 2.753452 TGAGTCCTGGTCTTGATCGTAC 59.247 50.000 0.00 0.00 0.00 3.67
54 55 2.753452 GAGTCCTGGTCTTGATCGTACA 59.247 50.000 0.00 0.00 0.00 2.90
55 56 2.492484 AGTCCTGGTCTTGATCGTACAC 59.508 50.000 0.00 0.00 0.00 2.90
56 57 2.230508 GTCCTGGTCTTGATCGTACACA 59.769 50.000 0.00 0.00 0.00 3.72
57 58 3.096852 TCCTGGTCTTGATCGTACACAT 58.903 45.455 0.00 0.00 0.00 3.21
58 59 3.513912 TCCTGGTCTTGATCGTACACATT 59.486 43.478 0.00 0.00 0.00 2.71
59 60 4.020573 TCCTGGTCTTGATCGTACACATTT 60.021 41.667 0.00 0.00 0.00 2.32
60 61 4.093408 CCTGGTCTTGATCGTACACATTTG 59.907 45.833 0.00 0.00 0.00 2.32
61 62 4.637276 TGGTCTTGATCGTACACATTTGT 58.363 39.130 0.00 0.00 40.02 2.83
62 63 5.785243 TGGTCTTGATCGTACACATTTGTA 58.215 37.500 0.00 0.00 37.15 2.41
63 64 6.403049 TGGTCTTGATCGTACACATTTGTAT 58.597 36.000 0.00 0.00 40.40 2.29
64 65 6.312672 TGGTCTTGATCGTACACATTTGTATG 59.687 38.462 5.07 5.07 43.92 2.39
65 66 6.312918 GGTCTTGATCGTACACATTTGTATGT 59.687 38.462 10.30 0.19 45.81 2.29
66 67 7.490079 GGTCTTGATCGTACACATTTGTATGTA 59.510 37.037 10.30 0.24 43.07 2.29
67 68 9.031360 GTCTTGATCGTACACATTTGTATGTAT 57.969 33.333 10.30 4.29 43.07 2.29
68 69 9.030301 TCTTGATCGTACACATTTGTATGTATG 57.970 33.333 10.30 0.00 43.07 2.39
69 70 8.934507 TTGATCGTACACATTTGTATGTATGA 57.065 30.769 10.30 8.34 46.24 2.15
96 97 3.287520 GATTGAATCGGGGGCGCC 61.288 66.667 21.18 21.18 0.00 6.53
97 98 4.122149 ATTGAATCGGGGGCGCCA 62.122 61.111 30.85 7.96 0.00 5.69
105 106 4.162690 GGGGGCGCCACAGTCTAG 62.163 72.222 33.37 0.00 0.00 2.43
106 107 3.391382 GGGGCGCCACAGTCTAGT 61.391 66.667 30.85 0.00 0.00 2.57
107 108 2.184579 GGGCGCCACAGTCTAGTC 59.815 66.667 30.85 1.84 0.00 2.59
108 109 2.352032 GGGCGCCACAGTCTAGTCT 61.352 63.158 30.85 0.00 0.00 3.24
109 110 1.035932 GGGCGCCACAGTCTAGTCTA 61.036 60.000 30.85 0.00 0.00 2.59
110 111 0.100861 GGCGCCACAGTCTAGTCTAC 59.899 60.000 24.80 0.00 0.00 2.59
264 265 0.318614 AAAGCAATTTCGCCCACACG 60.319 50.000 0.00 0.00 0.00 4.49
336 338 3.068590 AGCATGTCAACTTTCTGTTTGGG 59.931 43.478 0.00 0.00 36.63 4.12
414 419 5.669164 AAAAATATGTGGGCGGTGTTAAT 57.331 34.783 0.00 0.00 0.00 1.40
415 420 6.777213 AAAAATATGTGGGCGGTGTTAATA 57.223 33.333 0.00 0.00 0.00 0.98
416 421 6.969993 AAAATATGTGGGCGGTGTTAATAT 57.030 33.333 0.00 0.00 0.00 1.28
417 422 8.466617 AAAAATATGTGGGCGGTGTTAATATA 57.533 30.769 0.00 0.00 0.00 0.86
418 423 8.644374 AAAATATGTGGGCGGTGTTAATATAT 57.356 30.769 0.00 0.00 0.00 0.86
419 424 7.624360 AATATGTGGGCGGTGTTAATATATG 57.376 36.000 0.00 0.00 0.00 1.78
420 425 3.142951 TGTGGGCGGTGTTAATATATGC 58.857 45.455 0.00 0.00 0.00 3.14
421 426 2.486592 GTGGGCGGTGTTAATATATGCC 59.513 50.000 0.42 0.42 40.25 4.40
422 427 2.106684 TGGGCGGTGTTAATATATGCCA 59.893 45.455 9.46 0.00 42.71 4.92
453 461 9.142515 TGTGACAGTTATCGTCGTAAATAAAAT 57.857 29.630 0.00 0.00 36.11 1.82
502 510 0.618458 CAAGGGAAAGGGATCCACGA 59.382 55.000 15.23 0.00 41.55 4.35
504 512 1.132500 AGGGAAAGGGATCCACGATC 58.868 55.000 15.23 5.83 41.55 3.69
505 513 0.837272 GGGAAAGGGATCCACGATCA 59.163 55.000 15.23 0.00 40.50 2.92
506 514 1.211949 GGGAAAGGGATCCACGATCAA 59.788 52.381 15.23 0.00 40.50 2.57
507 515 2.158608 GGGAAAGGGATCCACGATCAAT 60.159 50.000 15.23 0.00 40.50 2.57
508 516 3.555966 GGAAAGGGATCCACGATCAATT 58.444 45.455 15.23 0.00 40.50 2.32
509 517 3.565902 GGAAAGGGATCCACGATCAATTC 59.434 47.826 15.23 5.48 40.50 2.17
510 518 4.455606 GAAAGGGATCCACGATCAATTCT 58.544 43.478 15.23 0.00 40.50 2.40
511 519 5.454755 GGAAAGGGATCCACGATCAATTCTA 60.455 44.000 15.23 0.00 40.50 2.10
512 520 4.608948 AGGGATCCACGATCAATTCTAC 57.391 45.455 15.23 0.00 40.50 2.59
513 521 3.005897 AGGGATCCACGATCAATTCTACG 59.994 47.826 15.23 0.00 40.50 3.51
514 522 3.318017 GGATCCACGATCAATTCTACGG 58.682 50.000 6.95 0.00 40.50 4.02
515 523 2.882927 TCCACGATCAATTCTACGGG 57.117 50.000 0.00 0.00 0.00 5.28
516 524 2.380941 TCCACGATCAATTCTACGGGA 58.619 47.619 0.00 0.00 0.00 5.14
517 525 2.761767 TCCACGATCAATTCTACGGGAA 59.238 45.455 0.00 0.00 38.41 3.97
518 526 3.196039 TCCACGATCAATTCTACGGGAAA 59.804 43.478 0.00 0.00 37.49 3.13
519 527 3.555956 CCACGATCAATTCTACGGGAAAG 59.444 47.826 0.00 0.00 37.49 2.62
520 528 4.181578 CACGATCAATTCTACGGGAAAGT 58.818 43.478 0.00 0.00 37.49 2.66
521 529 5.345702 CACGATCAATTCTACGGGAAAGTA 58.654 41.667 0.00 0.00 37.49 2.24
522 530 5.983720 CACGATCAATTCTACGGGAAAGTAT 59.016 40.000 0.00 0.00 37.49 2.12
523 531 6.144080 CACGATCAATTCTACGGGAAAGTATC 59.856 42.308 0.00 0.00 37.49 2.24
524 532 5.342525 CGATCAATTCTACGGGAAAGTATCG 59.657 44.000 13.80 13.80 37.49 2.92
525 533 5.840243 TCAATTCTACGGGAAAGTATCGA 57.160 39.130 0.00 0.00 37.49 3.59
526 534 5.828747 TCAATTCTACGGGAAAGTATCGAG 58.171 41.667 0.00 0.00 37.49 4.04
527 535 5.359009 TCAATTCTACGGGAAAGTATCGAGT 59.641 40.000 0.00 0.00 37.49 4.18
528 536 4.627611 TTCTACGGGAAAGTATCGAGTG 57.372 45.455 0.00 0.00 0.00 3.51
529 537 2.357009 TCTACGGGAAAGTATCGAGTGC 59.643 50.000 0.00 0.00 0.00 4.40
530 538 1.183549 ACGGGAAAGTATCGAGTGCT 58.816 50.000 0.00 0.00 0.00 4.40
531 539 1.134560 ACGGGAAAGTATCGAGTGCTC 59.865 52.381 0.00 0.00 0.00 4.26
532 540 1.536284 CGGGAAAGTATCGAGTGCTCC 60.536 57.143 0.00 0.00 0.00 4.70
533 541 1.202545 GGGAAAGTATCGAGTGCTCCC 60.203 57.143 6.62 6.62 0.00 4.30
534 542 1.480954 GGAAAGTATCGAGTGCTCCCA 59.519 52.381 0.00 0.00 0.00 4.37
535 543 2.482142 GGAAAGTATCGAGTGCTCCCAG 60.482 54.545 0.00 0.00 0.00 4.45
536 544 0.461961 AAGTATCGAGTGCTCCCAGC 59.538 55.000 0.00 0.00 42.82 4.85
537 545 1.068250 GTATCGAGTGCTCCCAGCC 59.932 63.158 0.00 0.00 41.51 4.85
538 546 1.075970 TATCGAGTGCTCCCAGCCT 60.076 57.895 0.00 0.00 41.51 4.58
539 547 0.687757 TATCGAGTGCTCCCAGCCTT 60.688 55.000 0.00 0.00 41.51 4.35
540 548 2.249413 ATCGAGTGCTCCCAGCCTTG 62.249 60.000 0.00 0.00 41.51 3.61
541 549 2.045536 GAGTGCTCCCAGCCTTGG 60.046 66.667 0.00 0.00 41.51 3.61
549 557 2.355115 CCAGCCTTGGGGTACACC 59.645 66.667 7.40 7.40 41.05 4.16
559 567 2.745037 GGTACACCCGGTGCTTCA 59.255 61.111 17.99 0.00 36.98 3.02
560 568 1.071814 GGTACACCCGGTGCTTCAA 59.928 57.895 17.99 0.00 36.98 2.69
561 569 0.322187 GGTACACCCGGTGCTTCAAT 60.322 55.000 17.99 0.00 36.98 2.57
562 570 1.065998 GGTACACCCGGTGCTTCAATA 60.066 52.381 17.99 0.00 36.98 1.90
563 571 2.420967 GGTACACCCGGTGCTTCAATAT 60.421 50.000 17.99 0.00 36.98 1.28
564 572 2.038387 ACACCCGGTGCTTCAATATC 57.962 50.000 17.99 0.00 36.98 1.63
565 573 1.280710 ACACCCGGTGCTTCAATATCA 59.719 47.619 17.99 0.00 36.98 2.15
566 574 2.290641 ACACCCGGTGCTTCAATATCAA 60.291 45.455 17.99 0.00 36.98 2.57
567 575 2.752354 CACCCGGTGCTTCAATATCAAA 59.248 45.455 4.16 0.00 0.00 2.69
568 576 3.192422 CACCCGGTGCTTCAATATCAAAA 59.808 43.478 4.16 0.00 0.00 2.44
569 577 3.829601 ACCCGGTGCTTCAATATCAAAAA 59.170 39.130 0.00 0.00 0.00 1.94
630 638 9.295825 AGTTGTAAATATTCACAAGGAATGTCA 57.704 29.630 4.31 0.00 45.70 3.58
633 641 9.460019 TGTAAATATTCACAAGGAATGTCATCA 57.540 29.630 0.00 0.00 45.70 3.07
634 642 9.722056 GTAAATATTCACAAGGAATGTCATCAC 57.278 33.333 0.00 0.00 45.70 3.06
635 643 7.943079 AATATTCACAAGGAATGTCATCACA 57.057 32.000 0.00 0.00 45.70 3.58
636 644 8.529424 AATATTCACAAGGAATGTCATCACAT 57.471 30.769 0.00 0.00 45.70 3.21
637 645 5.885230 TTCACAAGGAATGTCATCACATC 57.115 39.130 0.00 0.00 42.89 3.06
638 646 4.264253 TCACAAGGAATGTCATCACATCC 58.736 43.478 0.00 0.00 42.89 3.51
639 647 4.019051 TCACAAGGAATGTCATCACATCCT 60.019 41.667 0.00 0.00 42.89 3.24
640 648 4.334759 CACAAGGAATGTCATCACATCCTC 59.665 45.833 4.57 0.00 42.89 3.71
641 649 4.226846 ACAAGGAATGTCATCACATCCTCT 59.773 41.667 4.57 0.00 42.89 3.69
642 650 5.426509 ACAAGGAATGTCATCACATCCTCTA 59.573 40.000 4.57 0.00 42.89 2.43
643 651 6.070021 ACAAGGAATGTCATCACATCCTCTAA 60.070 38.462 4.57 0.00 42.89 2.10
644 652 6.566079 AGGAATGTCATCACATCCTCTAAA 57.434 37.500 0.00 0.00 42.89 1.85
645 653 6.962182 AGGAATGTCATCACATCCTCTAAAA 58.038 36.000 0.00 0.00 42.89 1.52
646 654 7.405292 AGGAATGTCATCACATCCTCTAAAAA 58.595 34.615 0.00 0.00 42.89 1.94
647 655 8.057623 AGGAATGTCATCACATCCTCTAAAAAT 58.942 33.333 0.00 0.00 42.89 1.82
648 656 8.689972 GGAATGTCATCACATCCTCTAAAAATT 58.310 33.333 0.00 0.00 42.89 1.82
651 659 8.634335 TGTCATCACATCCTCTAAAAATTTCA 57.366 30.769 0.00 0.00 0.00 2.69
652 660 8.733458 TGTCATCACATCCTCTAAAAATTTCAG 58.267 33.333 0.00 0.00 0.00 3.02
653 661 8.186821 GTCATCACATCCTCTAAAAATTTCAGG 58.813 37.037 0.00 0.00 0.00 3.86
654 662 7.890127 TCATCACATCCTCTAAAAATTTCAGGT 59.110 33.333 0.00 0.00 0.00 4.00
655 663 7.687941 TCACATCCTCTAAAAATTTCAGGTC 57.312 36.000 0.00 0.00 0.00 3.85
656 664 6.659242 TCACATCCTCTAAAAATTTCAGGTCC 59.341 38.462 0.00 0.00 0.00 4.46
657 665 6.434028 CACATCCTCTAAAAATTTCAGGTCCA 59.566 38.462 0.00 0.00 0.00 4.02
658 666 7.010160 ACATCCTCTAAAAATTTCAGGTCCAA 58.990 34.615 0.00 0.00 0.00 3.53
659 667 7.508977 ACATCCTCTAAAAATTTCAGGTCCAAA 59.491 33.333 0.00 0.00 0.00 3.28
660 668 7.906199 TCCTCTAAAAATTTCAGGTCCAAAA 57.094 32.000 0.00 0.00 0.00 2.44
661 669 8.491045 TCCTCTAAAAATTTCAGGTCCAAAAT 57.509 30.769 0.00 0.00 0.00 1.82
662 670 8.585018 TCCTCTAAAAATTTCAGGTCCAAAATC 58.415 33.333 0.00 0.00 0.00 2.17
663 671 7.542130 CCTCTAAAAATTTCAGGTCCAAAATCG 59.458 37.037 0.00 0.00 0.00 3.34
664 672 8.172352 TCTAAAAATTTCAGGTCCAAAATCGA 57.828 30.769 0.00 0.00 0.00 3.59
665 673 8.634444 TCTAAAAATTTCAGGTCCAAAATCGAA 58.366 29.630 0.00 0.00 0.00 3.71
666 674 9.255304 CTAAAAATTTCAGGTCCAAAATCGAAA 57.745 29.630 0.00 0.00 0.00 3.46
667 675 8.675705 AAAAATTTCAGGTCCAAAATCGAAAT 57.324 26.923 0.00 0.00 35.25 2.17
668 676 7.656707 AAATTTCAGGTCCAAAATCGAAATG 57.343 32.000 0.00 0.00 34.31 2.32
669 677 5.782893 TTTCAGGTCCAAAATCGAAATGT 57.217 34.783 0.00 0.00 0.00 2.71
670 678 6.885952 TTTCAGGTCCAAAATCGAAATGTA 57.114 33.333 0.00 0.00 0.00 2.29
671 679 5.873179 TCAGGTCCAAAATCGAAATGTAC 57.127 39.130 0.00 0.00 0.00 2.90
672 680 5.309638 TCAGGTCCAAAATCGAAATGTACA 58.690 37.500 0.00 0.00 0.00 2.90
673 681 5.943416 TCAGGTCCAAAATCGAAATGTACAT 59.057 36.000 1.41 1.41 0.00 2.29
674 682 6.432783 TCAGGTCCAAAATCGAAATGTACATT 59.567 34.615 15.47 15.47 0.00 2.71
675 683 6.527722 CAGGTCCAAAATCGAAATGTACATTG 59.472 38.462 21.46 10.38 0.00 2.82
676 684 6.432783 AGGTCCAAAATCGAAATGTACATTGA 59.567 34.615 21.46 15.22 0.00 2.57
677 685 6.747280 GGTCCAAAATCGAAATGTACATTGAG 59.253 38.462 21.46 17.21 0.00 3.02
678 686 7.361713 GGTCCAAAATCGAAATGTACATTGAGA 60.362 37.037 21.46 21.28 0.00 3.27
679 687 8.020819 GTCCAAAATCGAAATGTACATTGAGAA 58.979 33.333 21.46 8.47 0.00 2.87
680 688 8.572185 TCCAAAATCGAAATGTACATTGAGAAA 58.428 29.630 21.46 6.83 0.00 2.52
681 689 8.638565 CCAAAATCGAAATGTACATTGAGAAAC 58.361 33.333 21.46 8.44 0.00 2.78
682 690 9.179552 CAAAATCGAAATGTACATTGAGAAACA 57.820 29.630 21.46 4.00 0.00 2.83
683 691 9.743057 AAAATCGAAATGTACATTGAGAAACAA 57.257 25.926 21.46 3.68 42.95 2.83
684 692 9.743057 AAATCGAAATGTACATTGAGAAACAAA 57.257 25.926 21.46 3.05 42.03 2.83
685 693 9.743057 AATCGAAATGTACATTGAGAAACAAAA 57.257 25.926 21.46 2.43 42.03 2.44
686 694 9.743057 ATCGAAATGTACATTGAGAAACAAAAA 57.257 25.926 21.46 1.80 42.03 1.94
713 721 9.647918 AGAGAAATCTAGGTGTGAATAGTATCA 57.352 33.333 0.00 0.00 0.00 2.15
719 727 9.770097 ATCTAGGTGTGAATAGTATCAATGTTG 57.230 33.333 0.00 0.00 0.00 3.33
720 728 6.683974 AGGTGTGAATAGTATCAATGTTGC 57.316 37.500 0.00 0.00 0.00 4.17
721 729 6.418101 AGGTGTGAATAGTATCAATGTTGCT 58.582 36.000 0.00 0.00 0.00 3.91
722 730 6.886459 AGGTGTGAATAGTATCAATGTTGCTT 59.114 34.615 0.00 0.00 0.00 3.91
723 731 7.394359 AGGTGTGAATAGTATCAATGTTGCTTT 59.606 33.333 0.00 0.00 0.00 3.51
724 732 8.028938 GGTGTGAATAGTATCAATGTTGCTTTT 58.971 33.333 0.00 0.00 0.00 2.27
725 733 8.853345 GTGTGAATAGTATCAATGTTGCTTTTG 58.147 33.333 0.00 0.00 0.00 2.44
726 734 8.575589 TGTGAATAGTATCAATGTTGCTTTTGT 58.424 29.630 0.00 0.00 0.00 2.83
727 735 9.065871 GTGAATAGTATCAATGTTGCTTTTGTC 57.934 33.333 0.00 0.00 0.00 3.18
728 736 9.013229 TGAATAGTATCAATGTTGCTTTTGTCT 57.987 29.630 0.00 0.00 0.00 3.41
729 737 9.495754 GAATAGTATCAATGTTGCTTTTGTCTC 57.504 33.333 0.00 0.00 0.00 3.36
730 738 8.798859 ATAGTATCAATGTTGCTTTTGTCTCT 57.201 30.769 0.00 0.00 0.00 3.10
731 739 7.516198 AGTATCAATGTTGCTTTTGTCTCTT 57.484 32.000 0.00 0.00 0.00 2.85
732 740 7.588512 AGTATCAATGTTGCTTTTGTCTCTTC 58.411 34.615 0.00 0.00 0.00 2.87
733 741 6.645790 ATCAATGTTGCTTTTGTCTCTTCT 57.354 33.333 0.00 0.00 0.00 2.85
734 742 6.455360 TCAATGTTGCTTTTGTCTCTTCTT 57.545 33.333 0.00 0.00 0.00 2.52
735 743 6.866480 TCAATGTTGCTTTTGTCTCTTCTTT 58.134 32.000 0.00 0.00 0.00 2.52
736 744 7.995289 TCAATGTTGCTTTTGTCTCTTCTTTA 58.005 30.769 0.00 0.00 0.00 1.85
737 745 7.915397 TCAATGTTGCTTTTGTCTCTTCTTTAC 59.085 33.333 0.00 0.00 0.00 2.01
738 746 6.751514 TGTTGCTTTTGTCTCTTCTTTACA 57.248 33.333 0.00 0.00 0.00 2.41
739 747 6.551736 TGTTGCTTTTGTCTCTTCTTTACAC 58.448 36.000 0.00 0.00 0.00 2.90
740 748 6.374333 TGTTGCTTTTGTCTCTTCTTTACACT 59.626 34.615 0.00 0.00 0.00 3.55
741 749 7.551262 TGTTGCTTTTGTCTCTTCTTTACACTA 59.449 33.333 0.00 0.00 0.00 2.74
742 750 8.560374 GTTGCTTTTGTCTCTTCTTTACACTAT 58.440 33.333 0.00 0.00 0.00 2.12
743 751 8.677148 TGCTTTTGTCTCTTCTTTACACTATT 57.323 30.769 0.00 0.00 0.00 1.73
744 752 8.774586 TGCTTTTGTCTCTTCTTTACACTATTC 58.225 33.333 0.00 0.00 0.00 1.75
745 753 8.774586 GCTTTTGTCTCTTCTTTACACTATTCA 58.225 33.333 0.00 0.00 0.00 2.57
780 788 6.443934 TTTTTCTCAATGTTCGAGTTTGGA 57.556 33.333 4.80 0.39 0.00 3.53
781 789 5.418310 TTTCTCAATGTTCGAGTTTGGAC 57.582 39.130 4.80 0.00 0.00 4.02
782 790 3.399330 TCTCAATGTTCGAGTTTGGACC 58.601 45.455 4.80 0.00 0.00 4.46
783 791 3.071023 TCTCAATGTTCGAGTTTGGACCT 59.929 43.478 0.00 0.00 0.00 3.85
784 792 3.138304 TCAATGTTCGAGTTTGGACCTG 58.862 45.455 0.00 0.00 0.00 4.00
785 793 3.138304 CAATGTTCGAGTTTGGACCTGA 58.862 45.455 0.00 0.00 0.00 3.86
786 794 2.992124 TGTTCGAGTTTGGACCTGAA 57.008 45.000 0.00 0.00 0.00 3.02
787 795 3.269538 TGTTCGAGTTTGGACCTGAAA 57.730 42.857 0.00 0.00 0.00 2.69
788 796 3.815809 TGTTCGAGTTTGGACCTGAAAT 58.184 40.909 0.00 0.00 0.00 2.17
789 797 4.204012 TGTTCGAGTTTGGACCTGAAATT 58.796 39.130 0.00 0.00 0.00 1.82
790 798 4.642885 TGTTCGAGTTTGGACCTGAAATTT 59.357 37.500 0.00 0.00 0.00 1.82
791 799 5.126384 TGTTCGAGTTTGGACCTGAAATTTT 59.874 36.000 0.00 0.00 0.00 1.82
792 800 5.845391 TCGAGTTTGGACCTGAAATTTTT 57.155 34.783 0.00 0.00 0.00 1.94
793 801 6.945938 TCGAGTTTGGACCTGAAATTTTTA 57.054 33.333 0.00 0.00 0.00 1.52
794 802 7.336161 TCGAGTTTGGACCTGAAATTTTTAA 57.664 32.000 0.00 0.00 0.00 1.52
795 803 7.422399 TCGAGTTTGGACCTGAAATTTTTAAG 58.578 34.615 0.00 0.00 0.00 1.85
796 804 6.640907 CGAGTTTGGACCTGAAATTTTTAAGG 59.359 38.462 11.83 11.83 43.40 2.69
797 805 6.288294 AGTTTGGACCTGAAATTTTTAAGGC 58.712 36.000 12.86 7.78 41.78 4.35
798 806 6.099701 AGTTTGGACCTGAAATTTTTAAGGCT 59.900 34.615 12.86 0.00 41.78 4.58
799 807 6.493189 TTGGACCTGAAATTTTTAAGGCTT 57.507 33.333 4.58 4.58 41.78 4.35
800 808 5.852827 TGGACCTGAAATTTTTAAGGCTTG 58.147 37.500 10.69 0.00 41.78 4.01
801 809 5.365314 TGGACCTGAAATTTTTAAGGCTTGT 59.635 36.000 10.69 0.00 41.78 3.16
802 810 5.926542 GGACCTGAAATTTTTAAGGCTTGTC 59.073 40.000 10.69 3.80 41.78 3.18
803 811 6.462347 GGACCTGAAATTTTTAAGGCTTGTCA 60.462 38.462 10.69 1.51 41.78 3.58
804 812 6.280643 ACCTGAAATTTTTAAGGCTTGTCAC 58.719 36.000 10.69 0.00 41.78 3.67
805 813 6.127196 ACCTGAAATTTTTAAGGCTTGTCACA 60.127 34.615 10.69 0.00 41.78 3.58
806 814 6.930722 CCTGAAATTTTTAAGGCTTGTCACAT 59.069 34.615 10.69 0.00 32.15 3.21
807 815 7.116805 CCTGAAATTTTTAAGGCTTGTCACATC 59.883 37.037 10.69 1.26 32.15 3.06
808 816 6.928492 TGAAATTTTTAAGGCTTGTCACATCC 59.072 34.615 10.69 0.00 0.00 3.51
809 817 6.418057 AATTTTTAAGGCTTGTCACATCCA 57.582 33.333 10.69 0.00 0.00 3.41
810 818 6.610075 ATTTTTAAGGCTTGTCACATCCAT 57.390 33.333 10.69 0.00 0.00 3.41
811 819 6.418057 TTTTTAAGGCTTGTCACATCCATT 57.582 33.333 10.69 0.00 0.00 3.16
812 820 5.389859 TTTAAGGCTTGTCACATCCATTG 57.610 39.130 10.69 0.00 0.00 2.82
813 821 2.592102 AGGCTTGTCACATCCATTGT 57.408 45.000 0.06 0.00 39.91 2.71
838 846 8.905660 TGATCATTCACATTTTGTTTTGGATT 57.094 26.923 0.00 0.00 0.00 3.01
839 847 9.339850 TGATCATTCACATTTTGTTTTGGATTT 57.660 25.926 0.00 0.00 0.00 2.17
884 892 6.435430 TTTTTGACATTGATGTATCGGGAG 57.565 37.500 0.00 0.00 41.95 4.30
885 893 4.753516 TTGACATTGATGTATCGGGAGT 57.246 40.909 0.00 0.00 41.95 3.85
886 894 5.862678 TTGACATTGATGTATCGGGAGTA 57.137 39.130 0.00 0.00 41.95 2.59
887 895 5.196341 TGACATTGATGTATCGGGAGTAC 57.804 43.478 0.00 0.00 41.95 2.73
888 896 4.647399 TGACATTGATGTATCGGGAGTACA 59.353 41.667 0.00 0.00 41.95 2.90
889 897 4.945246 ACATTGATGTATCGGGAGTACAC 58.055 43.478 0.00 0.00 39.68 2.90
890 898 4.649674 ACATTGATGTATCGGGAGTACACT 59.350 41.667 0.00 0.00 39.68 3.55
891 899 4.649088 TTGATGTATCGGGAGTACACTG 57.351 45.455 0.00 0.00 35.11 3.66
892 900 3.893521 TGATGTATCGGGAGTACACTGA 58.106 45.455 0.00 0.00 35.11 3.41
893 901 3.883489 TGATGTATCGGGAGTACACTGAG 59.117 47.826 0.00 0.00 35.11 3.35
894 902 3.639672 TGTATCGGGAGTACACTGAGA 57.360 47.619 0.00 0.00 0.00 3.27
895 903 3.542648 TGTATCGGGAGTACACTGAGAG 58.457 50.000 0.00 0.00 0.00 3.20
896 904 1.394618 ATCGGGAGTACACTGAGAGC 58.605 55.000 0.00 0.00 0.00 4.09
897 905 0.037734 TCGGGAGTACACTGAGAGCA 59.962 55.000 0.00 0.00 0.00 4.26
898 906 0.171455 CGGGAGTACACTGAGAGCAC 59.829 60.000 0.00 0.00 0.00 4.40
899 907 0.533032 GGGAGTACACTGAGAGCACC 59.467 60.000 0.00 0.00 0.00 5.01
900 908 0.171455 GGAGTACACTGAGAGCACCG 59.829 60.000 0.00 0.00 0.00 4.94
901 909 0.171455 GAGTACACTGAGAGCACCGG 59.829 60.000 0.00 0.00 0.00 5.28
902 910 0.251209 AGTACACTGAGAGCACCGGA 60.251 55.000 9.46 0.00 0.00 5.14
903 911 0.818296 GTACACTGAGAGCACCGGAT 59.182 55.000 9.46 0.00 0.00 4.18
904 912 2.022195 GTACACTGAGAGCACCGGATA 58.978 52.381 9.46 0.00 0.00 2.59
905 913 0.818296 ACACTGAGAGCACCGGATAC 59.182 55.000 9.46 0.00 0.00 2.24
906 914 1.107114 CACTGAGAGCACCGGATACT 58.893 55.000 9.46 0.83 0.00 2.12
907 915 1.478510 CACTGAGAGCACCGGATACTT 59.521 52.381 9.46 0.00 0.00 2.24
908 916 2.093973 CACTGAGAGCACCGGATACTTT 60.094 50.000 9.46 0.00 0.00 2.66
909 917 2.166664 ACTGAGAGCACCGGATACTTTC 59.833 50.000 9.46 7.58 0.00 2.62
910 918 1.480954 TGAGAGCACCGGATACTTTCC 59.519 52.381 9.46 0.00 41.59 3.13
964 972 2.217510 TCAGACTACCACTGGTCCTC 57.782 55.000 3.21 0.45 37.09 3.71
989 997 3.168528 CCCCATCCGAACCCCGAT 61.169 66.667 0.00 0.00 41.76 4.18
1206 1214 2.637947 GCCTTTCTCCAATCTGACTCC 58.362 52.381 0.00 0.00 0.00 3.85
1212 1220 1.064803 CTCCAATCTGACTCCGACTCG 59.935 57.143 0.00 0.00 0.00 4.18
1346 1354 2.743928 CACCAGTCCAGCTTCCGC 60.744 66.667 0.00 0.00 0.00 5.54
1519 1527 3.449227 CGGCGAGCTGGGTAGACA 61.449 66.667 0.00 0.00 0.00 3.41
1521 1529 1.522569 GGCGAGCTGGGTAGACATT 59.477 57.895 0.00 0.00 0.00 2.71
1576 1584 1.458777 TGGGTGGAGGTCTTCACGT 60.459 57.895 3.57 0.00 34.93 4.49
1881 1889 3.390521 AGGGCGACATTCGAGGCA 61.391 61.111 0.00 0.00 43.74 4.75
2309 2320 8.899427 ATTGTAGTGAGATGGTGATTCTATTG 57.101 34.615 0.00 0.00 0.00 1.90
2628 2657 5.299279 AGTTCGCTTTTTGAGGAATTCTTCA 59.701 36.000 15.69 15.69 0.00 3.02
2663 2692 6.308524 CGTATTCGTATAATTATTGCACGGGA 59.691 38.462 15.64 8.26 33.59 5.14
2668 2697 7.356540 TCGTATAATTATTGCACGGGAAAATG 58.643 34.615 15.64 0.00 33.59 2.32
2714 2743 2.901192 TGACGATCCTTGTTTGGGAGTA 59.099 45.455 0.00 0.00 36.21 2.59
2755 2784 6.161381 TCCAGAGTAACTTCGTAATGGTTTC 58.839 40.000 0.00 0.00 0.00 2.78
2774 2803 6.127925 TGGTTTCGCTAATTCTTAGTCGACTA 60.128 38.462 21.25 21.25 39.56 2.59
2802 2831 6.734104 TTAACTAAGTCCTAGTCGACTCAC 57.266 41.667 23.89 16.79 42.35 3.51
2805 2834 5.254901 ACTAAGTCCTAGTCGACTCACAAT 58.745 41.667 23.89 12.24 42.35 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.729227 TCACAACACAACTCTAGACACA 57.271 40.909 0.00 0.00 0.00 3.72
1 2 7.316640 AGATATCACAACACAACTCTAGACAC 58.683 38.462 5.32 0.00 0.00 3.67
2 3 7.468141 AGATATCACAACACAACTCTAGACA 57.532 36.000 5.32 0.00 0.00 3.41
3 4 8.247562 AGAAGATATCACAACACAACTCTAGAC 58.752 37.037 5.32 0.00 0.00 2.59
4 5 8.354711 AGAAGATATCACAACACAACTCTAGA 57.645 34.615 5.32 0.00 0.00 2.43
5 6 8.246871 TGAGAAGATATCACAACACAACTCTAG 58.753 37.037 5.32 0.00 0.00 2.43
6 7 8.122472 TGAGAAGATATCACAACACAACTCTA 57.878 34.615 5.32 0.00 0.00 2.43
7 8 6.997655 TGAGAAGATATCACAACACAACTCT 58.002 36.000 5.32 0.00 0.00 3.24
8 9 7.547019 TCATGAGAAGATATCACAACACAACTC 59.453 37.037 5.32 0.00 32.20 3.01
9 10 7.389232 TCATGAGAAGATATCACAACACAACT 58.611 34.615 5.32 0.00 32.20 3.16
10 11 7.332926 ACTCATGAGAAGATATCACAACACAAC 59.667 37.037 29.27 0.00 32.20 3.32
11 12 7.389232 ACTCATGAGAAGATATCACAACACAA 58.611 34.615 29.27 0.00 32.20 3.33
12 13 6.939622 ACTCATGAGAAGATATCACAACACA 58.060 36.000 29.27 0.00 32.20 3.72
13 14 6.478344 GGACTCATGAGAAGATATCACAACAC 59.522 42.308 29.27 0.00 32.20 3.32
14 15 6.382282 AGGACTCATGAGAAGATATCACAACA 59.618 38.462 29.27 0.71 32.20 3.33
15 16 6.700960 CAGGACTCATGAGAAGATATCACAAC 59.299 42.308 29.27 2.72 32.20 3.32
16 17 6.183360 CCAGGACTCATGAGAAGATATCACAA 60.183 42.308 29.27 0.00 32.20 3.33
17 18 5.303845 CCAGGACTCATGAGAAGATATCACA 59.696 44.000 29.27 0.36 33.01 3.58
18 19 5.304101 ACCAGGACTCATGAGAAGATATCAC 59.696 44.000 29.27 8.89 0.00 3.06
19 20 5.462240 ACCAGGACTCATGAGAAGATATCA 58.538 41.667 29.27 0.00 0.00 2.15
20 21 5.774690 AGACCAGGACTCATGAGAAGATATC 59.225 44.000 29.27 17.42 0.00 1.63
21 22 5.714863 AGACCAGGACTCATGAGAAGATAT 58.285 41.667 29.27 10.02 0.00 1.63
22 23 5.136068 AGACCAGGACTCATGAGAAGATA 57.864 43.478 29.27 0.00 0.00 1.98
23 24 3.992999 AGACCAGGACTCATGAGAAGAT 58.007 45.455 29.27 6.49 0.00 2.40
24 25 3.464720 AGACCAGGACTCATGAGAAGA 57.535 47.619 29.27 0.00 0.00 2.87
25 26 3.513119 TCAAGACCAGGACTCATGAGAAG 59.487 47.826 29.27 14.13 0.00 2.85
26 27 3.510459 TCAAGACCAGGACTCATGAGAA 58.490 45.455 29.27 0.00 0.00 2.87
27 28 3.175438 TCAAGACCAGGACTCATGAGA 57.825 47.619 29.27 0.00 0.00 3.27
28 29 3.490590 CGATCAAGACCAGGACTCATGAG 60.491 52.174 21.37 21.37 0.00 2.90
29 30 2.428530 CGATCAAGACCAGGACTCATGA 59.571 50.000 0.00 0.00 0.00 3.07
30 31 2.167281 ACGATCAAGACCAGGACTCATG 59.833 50.000 0.00 0.00 0.00 3.07
31 32 2.461695 ACGATCAAGACCAGGACTCAT 58.538 47.619 0.00 0.00 0.00 2.90
32 33 1.924731 ACGATCAAGACCAGGACTCA 58.075 50.000 0.00 0.00 0.00 3.41
33 34 2.753452 TGTACGATCAAGACCAGGACTC 59.247 50.000 0.00 0.00 0.00 3.36
34 35 2.492484 GTGTACGATCAAGACCAGGACT 59.508 50.000 0.00 0.00 0.00 3.85
35 36 2.230508 TGTGTACGATCAAGACCAGGAC 59.769 50.000 0.00 0.00 0.00 3.85
36 37 2.521126 TGTGTACGATCAAGACCAGGA 58.479 47.619 0.00 0.00 0.00 3.86
37 38 3.526931 ATGTGTACGATCAAGACCAGG 57.473 47.619 0.00 0.00 0.00 4.45
38 39 4.690748 ACAAATGTGTACGATCAAGACCAG 59.309 41.667 0.00 0.00 35.72 4.00
39 40 4.637276 ACAAATGTGTACGATCAAGACCA 58.363 39.130 0.00 0.00 35.72 4.02
40 41 6.312918 ACATACAAATGTGTACGATCAAGACC 59.687 38.462 0.00 0.00 44.79 3.85
41 42 7.290857 ACATACAAATGTGTACGATCAAGAC 57.709 36.000 0.00 0.00 44.79 3.01
42 43 9.030301 CATACATACAAATGTGTACGATCAAGA 57.970 33.333 0.00 0.00 45.99 3.02
43 44 9.030301 TCATACATACAAATGTGTACGATCAAG 57.970 33.333 0.00 0.00 45.99 3.02
44 45 8.934507 TCATACATACAAATGTGTACGATCAA 57.065 30.769 0.00 0.00 45.99 2.57
45 46 9.541143 AATCATACATACAAATGTGTACGATCA 57.459 29.630 0.00 0.00 45.99 2.92
79 80 3.287520 GGCGCCCCCGATTCAATC 61.288 66.667 18.11 0.00 36.29 2.67
80 81 4.122149 TGGCGCCCCCGATTCAAT 62.122 61.111 26.77 0.00 36.29 2.57
88 89 4.162690 CTAGACTGTGGCGCCCCC 62.163 72.222 26.77 15.59 0.00 5.40
89 90 3.372554 GACTAGACTGTGGCGCCCC 62.373 68.421 26.77 14.61 0.00 5.80
90 91 1.035932 TAGACTAGACTGTGGCGCCC 61.036 60.000 26.77 16.24 0.00 6.13
91 92 0.100861 GTAGACTAGACTGTGGCGCC 59.899 60.000 22.73 22.73 0.00 6.53
92 93 0.100861 GGTAGACTAGACTGTGGCGC 59.899 60.000 0.00 0.00 0.00 6.53
93 94 1.752683 AGGTAGACTAGACTGTGGCG 58.247 55.000 4.90 0.00 0.00 5.69
94 95 3.570550 CCATAGGTAGACTAGACTGTGGC 59.429 52.174 13.53 0.00 35.84 5.01
95 96 4.580995 CACCATAGGTAGACTAGACTGTGG 59.419 50.000 19.87 19.87 44.69 4.17
96 97 5.066634 CACACCATAGGTAGACTAGACTGTG 59.933 48.000 4.90 5.25 34.56 3.66
97 98 5.194432 CACACCATAGGTAGACTAGACTGT 58.806 45.833 4.90 0.00 34.56 3.55
98 99 5.194432 ACACACCATAGGTAGACTAGACTG 58.806 45.833 4.90 0.00 34.56 3.51
99 100 5.438833 GACACACCATAGGTAGACTAGACT 58.561 45.833 0.00 0.00 34.56 3.24
100 101 4.579753 GGACACACCATAGGTAGACTAGAC 59.420 50.000 0.00 0.00 38.79 2.59
101 102 4.477581 AGGACACACCATAGGTAGACTAGA 59.522 45.833 0.00 0.00 42.04 2.43
102 103 4.794334 AGGACACACCATAGGTAGACTAG 58.206 47.826 0.00 0.00 42.04 2.57
103 104 4.386088 GGAGGACACACCATAGGTAGACTA 60.386 50.000 0.00 0.00 42.04 2.59
104 105 3.627747 GGAGGACACACCATAGGTAGACT 60.628 52.174 0.00 0.00 42.04 3.24
105 106 2.694109 GGAGGACACACCATAGGTAGAC 59.306 54.545 0.00 0.00 42.04 2.59
106 107 2.358932 GGGAGGACACACCATAGGTAGA 60.359 54.545 0.00 0.00 42.04 2.59
107 108 2.040178 GGGAGGACACACCATAGGTAG 58.960 57.143 0.00 0.00 42.04 3.18
108 109 1.343681 GGGGAGGACACACCATAGGTA 60.344 57.143 0.00 0.00 42.04 3.08
109 110 0.620700 GGGGAGGACACACCATAGGT 60.621 60.000 0.00 0.00 42.04 3.08
110 111 0.326618 AGGGGAGGACACACCATAGG 60.327 60.000 0.00 0.00 42.04 2.57
273 274 8.999431 GTCATCCTCTTGTAATTAAAGTTGTCA 58.001 33.333 0.00 0.00 0.00 3.58
307 308 4.974275 CAGAAAGTTGACATGCTTCACAAG 59.026 41.667 0.00 0.00 0.00 3.16
397 402 4.938832 GCATATATTAACACCGCCCACATA 59.061 41.667 0.00 0.00 0.00 2.29
398 403 3.756434 GCATATATTAACACCGCCCACAT 59.244 43.478 0.00 0.00 0.00 3.21
405 410 3.805422 ACGTGTGGCATATATTAACACCG 59.195 43.478 13.08 13.51 38.28 4.94
407 412 5.292345 TCACACGTGTGGCATATATTAACAC 59.708 40.000 39.88 10.37 45.65 3.32
408 413 5.420409 TCACACGTGTGGCATATATTAACA 58.580 37.500 39.88 19.05 45.65 2.41
409 414 5.977171 TCACACGTGTGGCATATATTAAC 57.023 39.130 39.88 0.00 45.65 2.01
420 425 1.719246 CGATAACTGTCACACGTGTGG 59.281 52.381 39.88 28.84 45.65 4.17
421 426 2.390938 ACGATAACTGTCACACGTGTG 58.609 47.619 37.04 37.04 46.91 3.82
422 427 2.658285 GACGATAACTGTCACACGTGT 58.342 47.619 17.22 17.22 36.37 4.49
453 461 6.647895 GGGACGAGTGAAGTCTGTTTTAAATA 59.352 38.462 0.00 0.00 38.58 1.40
490 498 4.501571 CGTAGAATTGATCGTGGATCCCTT 60.502 45.833 9.90 0.00 38.20 3.95
502 510 6.040616 ACTCGATACTTTCCCGTAGAATTGAT 59.959 38.462 0.00 0.00 33.44 2.57
504 512 5.459107 CACTCGATACTTTCCCGTAGAATTG 59.541 44.000 0.00 0.00 33.44 2.32
505 513 5.589192 CACTCGATACTTTCCCGTAGAATT 58.411 41.667 0.00 0.00 33.44 2.17
506 514 4.499357 GCACTCGATACTTTCCCGTAGAAT 60.499 45.833 0.00 0.00 33.44 2.40
507 515 3.181493 GCACTCGATACTTTCCCGTAGAA 60.181 47.826 0.00 0.00 0.00 2.10
508 516 2.357009 GCACTCGATACTTTCCCGTAGA 59.643 50.000 0.00 0.00 0.00 2.59
509 517 2.358267 AGCACTCGATACTTTCCCGTAG 59.642 50.000 0.00 0.00 0.00 3.51
510 518 2.357009 GAGCACTCGATACTTTCCCGTA 59.643 50.000 0.00 0.00 0.00 4.02
511 519 1.134560 GAGCACTCGATACTTTCCCGT 59.865 52.381 0.00 0.00 0.00 5.28
512 520 1.536284 GGAGCACTCGATACTTTCCCG 60.536 57.143 0.00 0.00 0.00 5.14
513 521 1.202545 GGGAGCACTCGATACTTTCCC 60.203 57.143 6.45 6.45 36.35 3.97
514 522 1.480954 TGGGAGCACTCGATACTTTCC 59.519 52.381 0.00 0.00 0.00 3.13
515 523 2.815478 CTGGGAGCACTCGATACTTTC 58.185 52.381 0.00 0.00 0.00 2.62
516 524 1.134670 GCTGGGAGCACTCGATACTTT 60.135 52.381 0.00 0.00 41.89 2.66
517 525 0.461961 GCTGGGAGCACTCGATACTT 59.538 55.000 0.00 0.00 41.89 2.24
518 526 1.395826 GGCTGGGAGCACTCGATACT 61.396 60.000 0.00 0.00 44.75 2.12
519 527 1.068250 GGCTGGGAGCACTCGATAC 59.932 63.158 0.00 0.00 44.75 2.24
520 528 0.687757 AAGGCTGGGAGCACTCGATA 60.688 55.000 0.00 0.00 44.75 2.92
521 529 1.992277 AAGGCTGGGAGCACTCGAT 60.992 57.895 0.00 0.00 44.75 3.59
522 530 2.604686 AAGGCTGGGAGCACTCGA 60.605 61.111 0.00 0.00 44.75 4.04
523 531 2.435586 CAAGGCTGGGAGCACTCG 60.436 66.667 0.00 0.00 44.75 4.18
524 532 2.045536 CCAAGGCTGGGAGCACTC 60.046 66.667 0.00 0.00 44.75 3.51
532 540 2.355115 GGTGTACCCCAAGGCTGG 59.645 66.667 0.00 0.00 43.10 4.85
542 550 0.322187 ATTGAAGCACCGGGTGTACC 60.322 55.000 26.86 16.16 35.75 3.34
543 551 2.389962 TATTGAAGCACCGGGTGTAC 57.610 50.000 26.86 18.07 35.75 2.90
544 552 2.502130 TGATATTGAAGCACCGGGTGTA 59.498 45.455 26.86 11.66 35.75 2.90
545 553 1.280710 TGATATTGAAGCACCGGGTGT 59.719 47.619 26.86 9.56 35.75 4.16
546 554 2.036958 TGATATTGAAGCACCGGGTG 57.963 50.000 22.87 22.87 36.51 4.61
547 555 2.799126 TTGATATTGAAGCACCGGGT 57.201 45.000 6.32 0.00 0.00 5.28
548 556 4.448537 TTTTTGATATTGAAGCACCGGG 57.551 40.909 6.32 0.00 0.00 5.73
604 612 9.295825 TGACATTCCTTGTGAATATTTACAACT 57.704 29.630 18.82 4.88 41.85 3.16
607 615 9.460019 TGATGACATTCCTTGTGAATATTTACA 57.540 29.630 8.87 8.87 41.85 2.41
608 616 9.722056 GTGATGACATTCCTTGTGAATATTTAC 57.278 33.333 3.48 3.48 41.85 2.01
609 617 9.460019 TGTGATGACATTCCTTGTGAATATTTA 57.540 29.630 0.00 0.00 41.85 1.40
610 618 8.352137 TGTGATGACATTCCTTGTGAATATTT 57.648 30.769 0.00 0.00 41.85 1.40
611 619 7.943079 TGTGATGACATTCCTTGTGAATATT 57.057 32.000 0.00 0.00 41.85 1.28
612 620 7.230108 GGATGTGATGACATTCCTTGTGAATAT 59.770 37.037 0.00 0.00 43.22 1.28
613 621 6.543465 GGATGTGATGACATTCCTTGTGAATA 59.457 38.462 0.00 0.00 43.22 1.75
614 622 5.359009 GGATGTGATGACATTCCTTGTGAAT 59.641 40.000 0.00 0.00 43.22 2.57
615 623 4.701651 GGATGTGATGACATTCCTTGTGAA 59.298 41.667 0.00 0.00 43.22 3.18
616 624 4.019051 AGGATGTGATGACATTCCTTGTGA 60.019 41.667 0.00 0.00 43.22 3.58
617 625 4.267536 AGGATGTGATGACATTCCTTGTG 58.732 43.478 0.00 0.00 43.22 3.33
618 626 4.226846 AGAGGATGTGATGACATTCCTTGT 59.773 41.667 14.19 6.05 43.22 3.16
619 627 4.778579 AGAGGATGTGATGACATTCCTTG 58.221 43.478 14.19 0.00 43.22 3.61
620 628 6.566079 TTAGAGGATGTGATGACATTCCTT 57.434 37.500 14.19 9.08 43.22 3.36
621 629 6.566079 TTTAGAGGATGTGATGACATTCCT 57.434 37.500 13.32 13.32 43.22 3.36
622 630 7.630242 TTTTTAGAGGATGTGATGACATTCC 57.370 36.000 0.00 2.75 43.22 3.01
625 633 9.246670 TGAAATTTTTAGAGGATGTGATGACAT 57.753 29.630 0.00 0.00 46.01 3.06
626 634 8.634335 TGAAATTTTTAGAGGATGTGATGACA 57.366 30.769 0.00 0.00 36.22 3.58
627 635 8.186821 CCTGAAATTTTTAGAGGATGTGATGAC 58.813 37.037 2.68 0.00 0.00 3.06
628 636 7.890127 ACCTGAAATTTTTAGAGGATGTGATGA 59.110 33.333 11.41 0.00 0.00 2.92
629 637 8.059798 ACCTGAAATTTTTAGAGGATGTGATG 57.940 34.615 11.41 0.00 0.00 3.07
630 638 7.340487 GGACCTGAAATTTTTAGAGGATGTGAT 59.660 37.037 11.41 0.00 0.00 3.06
631 639 6.659242 GGACCTGAAATTTTTAGAGGATGTGA 59.341 38.462 11.41 0.00 0.00 3.58
632 640 6.434028 TGGACCTGAAATTTTTAGAGGATGTG 59.566 38.462 11.41 0.00 0.00 3.21
633 641 6.552008 TGGACCTGAAATTTTTAGAGGATGT 58.448 36.000 11.41 0.00 0.00 3.06
634 642 7.466746 TTGGACCTGAAATTTTTAGAGGATG 57.533 36.000 11.41 0.00 0.00 3.51
635 643 8.491045 TTTTGGACCTGAAATTTTTAGAGGAT 57.509 30.769 11.41 0.37 0.00 3.24
636 644 7.906199 TTTTGGACCTGAAATTTTTAGAGGA 57.094 32.000 11.41 0.00 0.00 3.71
637 645 7.542130 CGATTTTGGACCTGAAATTTTTAGAGG 59.458 37.037 2.68 0.00 0.00 3.69
638 646 8.296713 TCGATTTTGGACCTGAAATTTTTAGAG 58.703 33.333 2.68 0.00 0.00 2.43
639 647 8.172352 TCGATTTTGGACCTGAAATTTTTAGA 57.828 30.769 2.68 2.70 0.00 2.10
640 648 8.810652 TTCGATTTTGGACCTGAAATTTTTAG 57.189 30.769 7.53 0.00 0.00 1.85
641 649 9.771534 ATTTCGATTTTGGACCTGAAATTTTTA 57.228 25.926 7.53 0.00 33.57 1.52
642 650 8.558700 CATTTCGATTTTGGACCTGAAATTTTT 58.441 29.630 7.53 0.00 34.74 1.94
643 651 7.714813 ACATTTCGATTTTGGACCTGAAATTTT 59.285 29.630 7.53 0.00 34.74 1.82
644 652 7.216494 ACATTTCGATTTTGGACCTGAAATTT 58.784 30.769 7.53 0.00 34.74 1.82
645 653 6.758254 ACATTTCGATTTTGGACCTGAAATT 58.242 32.000 7.53 0.00 34.74 1.82
646 654 6.345096 ACATTTCGATTTTGGACCTGAAAT 57.655 33.333 6.22 6.22 36.71 2.17
647 655 5.782893 ACATTTCGATTTTGGACCTGAAA 57.217 34.783 0.00 0.00 0.00 2.69
648 656 5.765677 TGTACATTTCGATTTTGGACCTGAA 59.234 36.000 0.00 0.00 0.00 3.02
649 657 5.309638 TGTACATTTCGATTTTGGACCTGA 58.690 37.500 0.00 0.00 0.00 3.86
650 658 5.621197 TGTACATTTCGATTTTGGACCTG 57.379 39.130 0.00 0.00 0.00 4.00
651 659 6.432783 TCAATGTACATTTCGATTTTGGACCT 59.567 34.615 18.50 0.00 0.00 3.85
652 660 6.616947 TCAATGTACATTTCGATTTTGGACC 58.383 36.000 18.50 0.00 0.00 4.46
653 661 7.526608 TCTCAATGTACATTTCGATTTTGGAC 58.473 34.615 18.50 0.00 0.00 4.02
654 662 7.680442 TCTCAATGTACATTTCGATTTTGGA 57.320 32.000 18.50 8.52 0.00 3.53
655 663 8.638565 GTTTCTCAATGTACATTTCGATTTTGG 58.361 33.333 18.50 4.58 0.00 3.28
656 664 9.179552 TGTTTCTCAATGTACATTTCGATTTTG 57.820 29.630 18.50 6.78 0.00 2.44
657 665 9.743057 TTGTTTCTCAATGTACATTTCGATTTT 57.257 25.926 18.50 0.00 0.00 1.82
658 666 9.743057 TTTGTTTCTCAATGTACATTTCGATTT 57.257 25.926 18.50 0.00 35.84 2.17
659 667 9.743057 TTTTGTTTCTCAATGTACATTTCGATT 57.257 25.926 18.50 0.00 35.84 3.34
660 668 9.743057 TTTTTGTTTCTCAATGTACATTTCGAT 57.257 25.926 18.50 0.00 35.84 3.59
687 695 9.647918 TGATACTATTCACACCTAGATTTCTCT 57.352 33.333 0.00 0.00 35.39 3.10
693 701 9.770097 CAACATTGATACTATTCACACCTAGAT 57.230 33.333 0.00 0.00 0.00 1.98
694 702 7.710907 GCAACATTGATACTATTCACACCTAGA 59.289 37.037 0.00 0.00 0.00 2.43
695 703 7.712639 AGCAACATTGATACTATTCACACCTAG 59.287 37.037 0.00 0.00 0.00 3.02
696 704 7.564793 AGCAACATTGATACTATTCACACCTA 58.435 34.615 0.00 0.00 0.00 3.08
697 705 6.418101 AGCAACATTGATACTATTCACACCT 58.582 36.000 0.00 0.00 0.00 4.00
698 706 6.683974 AGCAACATTGATACTATTCACACC 57.316 37.500 0.00 0.00 0.00 4.16
699 707 8.853345 CAAAAGCAACATTGATACTATTCACAC 58.147 33.333 0.00 0.00 0.00 3.82
700 708 8.575589 ACAAAAGCAACATTGATACTATTCACA 58.424 29.630 0.00 0.00 0.00 3.58
701 709 8.970691 ACAAAAGCAACATTGATACTATTCAC 57.029 30.769 0.00 0.00 0.00 3.18
702 710 9.013229 AGACAAAAGCAACATTGATACTATTCA 57.987 29.630 0.00 0.00 0.00 2.57
703 711 9.495754 GAGACAAAAGCAACATTGATACTATTC 57.504 33.333 0.00 0.00 0.00 1.75
704 712 9.236006 AGAGACAAAAGCAACATTGATACTATT 57.764 29.630 0.00 0.00 0.00 1.73
705 713 8.798859 AGAGACAAAAGCAACATTGATACTAT 57.201 30.769 0.00 0.00 0.00 2.12
706 714 8.621532 AAGAGACAAAAGCAACATTGATACTA 57.378 30.769 0.00 0.00 0.00 1.82
707 715 7.446625 AGAAGAGACAAAAGCAACATTGATACT 59.553 33.333 0.00 0.00 0.00 2.12
708 716 7.588512 AGAAGAGACAAAAGCAACATTGATAC 58.411 34.615 0.00 0.00 0.00 2.24
709 717 7.750229 AGAAGAGACAAAAGCAACATTGATA 57.250 32.000 0.00 0.00 0.00 2.15
710 718 6.645790 AGAAGAGACAAAAGCAACATTGAT 57.354 33.333 0.00 0.00 0.00 2.57
711 719 6.455360 AAGAAGAGACAAAAGCAACATTGA 57.545 33.333 0.00 0.00 0.00 2.57
712 720 7.701924 TGTAAAGAAGAGACAAAAGCAACATTG 59.298 33.333 0.00 0.00 0.00 2.82
713 721 7.702348 GTGTAAAGAAGAGACAAAAGCAACATT 59.298 33.333 0.00 0.00 0.00 2.71
714 722 7.067494 AGTGTAAAGAAGAGACAAAAGCAACAT 59.933 33.333 0.00 0.00 0.00 2.71
715 723 6.374333 AGTGTAAAGAAGAGACAAAAGCAACA 59.626 34.615 0.00 0.00 0.00 3.33
716 724 6.786207 AGTGTAAAGAAGAGACAAAAGCAAC 58.214 36.000 0.00 0.00 0.00 4.17
717 725 8.677148 ATAGTGTAAAGAAGAGACAAAAGCAA 57.323 30.769 0.00 0.00 0.00 3.91
718 726 8.677148 AATAGTGTAAAGAAGAGACAAAAGCA 57.323 30.769 0.00 0.00 0.00 3.91
719 727 8.774586 TGAATAGTGTAAAGAAGAGACAAAAGC 58.225 33.333 0.00 0.00 0.00 3.51
757 765 6.262601 GTCCAAACTCGAACATTGAGAAAAA 58.737 36.000 1.67 0.00 36.93 1.94
758 766 5.220970 GGTCCAAACTCGAACATTGAGAAAA 60.221 40.000 1.67 0.00 36.93 2.29
759 767 4.274950 GGTCCAAACTCGAACATTGAGAAA 59.725 41.667 1.67 0.00 36.93 2.52
760 768 3.813166 GGTCCAAACTCGAACATTGAGAA 59.187 43.478 1.67 0.00 36.93 2.87
761 769 3.071023 AGGTCCAAACTCGAACATTGAGA 59.929 43.478 1.67 0.98 36.93 3.27
762 770 3.187227 CAGGTCCAAACTCGAACATTGAG 59.813 47.826 6.17 0.00 39.40 3.02
763 771 3.138304 CAGGTCCAAACTCGAACATTGA 58.862 45.455 6.17 0.00 0.00 2.57
764 772 3.138304 TCAGGTCCAAACTCGAACATTG 58.862 45.455 0.00 0.00 0.00 2.82
765 773 3.485463 TCAGGTCCAAACTCGAACATT 57.515 42.857 0.00 0.00 0.00 2.71
766 774 3.485463 TTCAGGTCCAAACTCGAACAT 57.515 42.857 0.00 0.00 0.00 2.71
767 775 2.992124 TTCAGGTCCAAACTCGAACA 57.008 45.000 0.00 0.00 0.00 3.18
768 776 4.830826 AATTTCAGGTCCAAACTCGAAC 57.169 40.909 0.00 0.00 0.00 3.95
769 777 5.845391 AAAATTTCAGGTCCAAACTCGAA 57.155 34.783 0.00 0.00 0.00 3.71
770 778 5.845391 AAAAATTTCAGGTCCAAACTCGA 57.155 34.783 0.00 0.00 0.00 4.04
771 779 6.640907 CCTTAAAAATTTCAGGTCCAAACTCG 59.359 38.462 0.00 0.00 29.07 4.18
772 780 6.423905 GCCTTAAAAATTTCAGGTCCAAACTC 59.576 38.462 7.70 0.00 34.71 3.01
773 781 6.099701 AGCCTTAAAAATTTCAGGTCCAAACT 59.900 34.615 7.70 0.00 34.71 2.66
774 782 6.288294 AGCCTTAAAAATTTCAGGTCCAAAC 58.712 36.000 7.70 0.00 34.71 2.93
775 783 6.493189 AGCCTTAAAAATTTCAGGTCCAAA 57.507 33.333 7.70 0.00 34.71 3.28
776 784 6.126911 ACAAGCCTTAAAAATTTCAGGTCCAA 60.127 34.615 7.70 0.00 34.71 3.53
777 785 5.365314 ACAAGCCTTAAAAATTTCAGGTCCA 59.635 36.000 7.70 0.00 34.71 4.02
778 786 5.853936 ACAAGCCTTAAAAATTTCAGGTCC 58.146 37.500 7.70 0.00 34.71 4.46
779 787 6.420903 GTGACAAGCCTTAAAAATTTCAGGTC 59.579 38.462 7.70 0.00 34.71 3.85
780 788 6.127196 TGTGACAAGCCTTAAAAATTTCAGGT 60.127 34.615 7.70 0.00 34.71 4.00
781 789 6.279882 TGTGACAAGCCTTAAAAATTTCAGG 58.720 36.000 2.40 2.40 35.21 3.86
782 790 7.116805 GGATGTGACAAGCCTTAAAAATTTCAG 59.883 37.037 0.00 0.00 0.00 3.02
783 791 6.928492 GGATGTGACAAGCCTTAAAAATTTCA 59.072 34.615 0.00 0.00 0.00 2.69
784 792 6.928492 TGGATGTGACAAGCCTTAAAAATTTC 59.072 34.615 8.89 0.00 0.00 2.17
785 793 6.825610 TGGATGTGACAAGCCTTAAAAATTT 58.174 32.000 8.89 0.00 0.00 1.82
786 794 6.418057 TGGATGTGACAAGCCTTAAAAATT 57.582 33.333 8.89 0.00 0.00 1.82
787 795 6.610075 ATGGATGTGACAAGCCTTAAAAAT 57.390 33.333 8.89 0.00 0.00 1.82
788 796 6.183360 ACAATGGATGTGACAAGCCTTAAAAA 60.183 34.615 8.89 0.00 41.93 1.94
789 797 5.304101 ACAATGGATGTGACAAGCCTTAAAA 59.696 36.000 8.89 0.00 41.93 1.52
790 798 4.832266 ACAATGGATGTGACAAGCCTTAAA 59.168 37.500 8.89 0.00 41.93 1.52
791 799 4.406456 ACAATGGATGTGACAAGCCTTAA 58.594 39.130 8.89 0.00 41.93 1.85
792 800 4.032960 ACAATGGATGTGACAAGCCTTA 57.967 40.909 8.89 0.00 41.93 2.69
793 801 2.880443 ACAATGGATGTGACAAGCCTT 58.120 42.857 8.89 0.97 41.93 4.35
794 802 2.592102 ACAATGGATGTGACAAGCCT 57.408 45.000 8.89 0.00 41.93 4.58
813 821 8.905660 AATCCAAAACAAAATGTGAATGATCA 57.094 26.923 0.00 0.00 0.00 2.92
861 869 5.943416 ACTCCCGATACATCAATGTCAAAAA 59.057 36.000 0.00 0.00 41.97 1.94
862 870 5.496556 ACTCCCGATACATCAATGTCAAAA 58.503 37.500 0.00 0.00 41.97 2.44
863 871 5.097742 ACTCCCGATACATCAATGTCAAA 57.902 39.130 0.00 0.00 41.97 2.69
864 872 4.753516 ACTCCCGATACATCAATGTCAA 57.246 40.909 0.00 0.00 41.97 3.18
865 873 4.647399 TGTACTCCCGATACATCAATGTCA 59.353 41.667 0.00 0.00 41.97 3.58
866 874 4.982916 GTGTACTCCCGATACATCAATGTC 59.017 45.833 0.00 0.00 41.97 3.06
867 875 4.649674 AGTGTACTCCCGATACATCAATGT 59.350 41.667 0.70 0.70 44.48 2.71
868 876 4.984785 CAGTGTACTCCCGATACATCAATG 59.015 45.833 0.00 0.00 35.11 2.82
869 877 4.893524 TCAGTGTACTCCCGATACATCAAT 59.106 41.667 0.00 0.00 35.11 2.57
870 878 4.274978 TCAGTGTACTCCCGATACATCAA 58.725 43.478 0.00 0.00 35.11 2.57
871 879 3.883489 CTCAGTGTACTCCCGATACATCA 59.117 47.826 0.00 0.00 35.11 3.07
872 880 4.135306 TCTCAGTGTACTCCCGATACATC 58.865 47.826 0.00 0.00 35.11 3.06
873 881 4.138290 CTCTCAGTGTACTCCCGATACAT 58.862 47.826 0.00 0.00 35.11 2.29
874 882 3.542648 CTCTCAGTGTACTCCCGATACA 58.457 50.000 0.00 0.00 0.00 2.29
875 883 2.291190 GCTCTCAGTGTACTCCCGATAC 59.709 54.545 0.00 0.00 0.00 2.24
876 884 2.092592 TGCTCTCAGTGTACTCCCGATA 60.093 50.000 0.00 0.00 0.00 2.92
877 885 1.341089 TGCTCTCAGTGTACTCCCGAT 60.341 52.381 0.00 0.00 0.00 4.18
878 886 0.037734 TGCTCTCAGTGTACTCCCGA 59.962 55.000 0.00 0.00 0.00 5.14
879 887 0.171455 GTGCTCTCAGTGTACTCCCG 59.829 60.000 0.00 0.00 0.00 5.14
880 888 0.533032 GGTGCTCTCAGTGTACTCCC 59.467 60.000 0.00 0.00 0.00 4.30
881 889 0.171455 CGGTGCTCTCAGTGTACTCC 59.829 60.000 0.00 0.00 0.00 3.85
882 890 0.171455 CCGGTGCTCTCAGTGTACTC 59.829 60.000 0.00 0.00 0.00 2.59
883 891 0.251209 TCCGGTGCTCTCAGTGTACT 60.251 55.000 0.00 0.00 0.00 2.73
884 892 0.818296 ATCCGGTGCTCTCAGTGTAC 59.182 55.000 0.00 0.00 0.00 2.90
885 893 2.022195 GTATCCGGTGCTCTCAGTGTA 58.978 52.381 0.00 0.00 0.00 2.90
886 894 0.818296 GTATCCGGTGCTCTCAGTGT 59.182 55.000 0.00 0.00 0.00 3.55
887 895 1.107114 AGTATCCGGTGCTCTCAGTG 58.893 55.000 0.00 0.00 0.00 3.66
888 896 1.853963 AAGTATCCGGTGCTCTCAGT 58.146 50.000 0.00 0.00 0.00 3.41
889 897 2.482142 GGAAAGTATCCGGTGCTCTCAG 60.482 54.545 0.00 0.00 38.79 3.35
890 898 1.480954 GGAAAGTATCCGGTGCTCTCA 59.519 52.381 0.00 0.00 38.79 3.27
891 899 2.226602 GGAAAGTATCCGGTGCTCTC 57.773 55.000 0.00 0.00 38.79 3.20
901 909 4.587684 TGGAGTAGAATCGGGGAAAGTATC 59.412 45.833 0.00 0.00 0.00 2.24
902 910 4.344390 GTGGAGTAGAATCGGGGAAAGTAT 59.656 45.833 0.00 0.00 0.00 2.12
903 911 3.703052 GTGGAGTAGAATCGGGGAAAGTA 59.297 47.826 0.00 0.00 0.00 2.24
904 912 2.500504 GTGGAGTAGAATCGGGGAAAGT 59.499 50.000 0.00 0.00 0.00 2.66
905 913 2.481449 CGTGGAGTAGAATCGGGGAAAG 60.481 54.545 0.00 0.00 0.00 2.62
906 914 1.479323 CGTGGAGTAGAATCGGGGAAA 59.521 52.381 0.00 0.00 0.00 3.13
907 915 1.108776 CGTGGAGTAGAATCGGGGAA 58.891 55.000 0.00 0.00 0.00 3.97
908 916 1.389609 GCGTGGAGTAGAATCGGGGA 61.390 60.000 0.00 0.00 0.00 4.81
909 917 1.067582 GCGTGGAGTAGAATCGGGG 59.932 63.158 0.00 0.00 0.00 5.73
910 918 1.299165 CGCGTGGAGTAGAATCGGG 60.299 63.158 0.00 0.00 0.00 5.14
964 972 1.522806 TTCGGATGGGGAATTCGCG 60.523 57.895 15.50 0.00 37.18 5.87
989 997 4.028490 AGTTCATGGCGGCCGGAA 62.028 61.111 29.38 18.73 0.00 4.30
1206 1214 2.202623 GTGGTAGGCAGCGAGTCG 60.203 66.667 8.54 8.54 0.00 4.18
1212 1220 0.174617 GAGTGAGAGTGGTAGGCAGC 59.825 60.000 0.00 0.00 0.00 5.25
1328 1336 3.059982 CGGAAGCTGGACTGGTGA 58.940 61.111 0.00 0.00 0.00 4.02
1346 1354 1.683790 CGAAAACGCTACCTCGCCTG 61.684 60.000 0.00 0.00 0.00 4.85
1500 1508 4.753662 TCTACCCAGCTCGCCGGT 62.754 66.667 1.90 4.04 0.00 5.28
1519 1527 1.819305 GCAACTCCCACTGGTGACAAT 60.819 52.381 1.93 0.00 42.06 2.71
1521 1529 1.148273 GCAACTCCCACTGGTGACA 59.852 57.895 1.93 0.00 39.59 3.58
1836 1844 1.902508 AGATCCAGAACAAGCTTCCGA 59.097 47.619 0.00 0.00 0.00 4.55
1881 1889 0.759346 ACTCAAGGAAAGACCGCACT 59.241 50.000 0.00 0.00 44.74 4.40
2113 2124 1.691823 CCCCTCCCCCTTTCTGAAC 59.308 63.158 0.00 0.00 0.00 3.18
2114 2125 2.238701 GCCCCTCCCCCTTTCTGAA 61.239 63.158 0.00 0.00 0.00 3.02
2309 2320 4.718858 TTGTGCGACAGTATTGTAACAC 57.281 40.909 13.30 13.30 40.76 3.32
2324 2335 4.030529 CCGAGCAGATTTTAAAATTGTGCG 59.969 41.667 26.97 22.29 40.62 5.34
2668 2697 9.132521 CACTTTTAACCAATGAATCAACAGATC 57.867 33.333 0.00 0.00 0.00 2.75
2714 2743 2.915869 TGGATACAGAACCCTTCCAGT 58.084 47.619 0.00 0.00 46.17 4.00
2743 2772 7.459394 CTAAGAATTAGCGAAACCATTACGA 57.541 36.000 0.00 0.00 42.45 3.43
2774 2803 9.636879 GAGTCGACTAGGACTTAGTTAAATTTT 57.363 33.333 20.09 0.00 46.85 1.82
2792 2821 3.096852 TGTATCCCATTGTGAGTCGACT 58.903 45.455 20.18 20.18 0.00 4.18
2802 2831 4.146564 TCCTTGCATCATGTATCCCATTG 58.853 43.478 0.00 0.00 0.00 2.82
2805 2834 3.047857 TCTCCTTGCATCATGTATCCCA 58.952 45.455 0.00 0.00 0.00 4.37
2854 2883 7.803131 AGACATAAGGGGATTAAGGACTAAAC 58.197 38.462 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.