>input_sequence_61590
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-----------------------------------------------ATGAACTGCGTCCCCACCTTCTCCCGCCACCAC
CGCCGCTGGATCGTCTGTGCGGGCGCTGCTGCTGGTGCTTACCTGATCTACCACCACCCAGCCGTCGCCGCCCGCCGCCG
CCGCTTCTCCCGCCTGGCCTCGGCTCTCTCGTCCCTCGCCGATGCCGTCGCCGCCGTCGCCTCCGACCTCGCGGCCTTTC
TCCAATCTGACTCCGACTCGCTGCCTACCACTCTCACTCAACTATCCAAGCTCGCCTCCTCCCACGAGGCGACCGCCTCC
GCCTCCGCGCTCTCCGGGGCCCTCACCGCCGGCGTGCTCCGCGGCTACGCCTCCGTCACCAGTCCAGCTTCCGCAGGCGA
GGTAGCGTTTTCGGATCGTCTTGTTGAGAAGCTGTTCTCCCCAGCCGGCGAGCGGCTCGTCTCAGCCGTGGCGGGCAGCT
TCGGGCGCGACATCGTGCTCGCCTGTTATTCTGTCCCAGCCGATCCTTCAGGATCGGCGGGATCATCACCGGCGAGCTGG
GTAGACATTGTCACCAGTGGGAGTTGCCGTAGGGCGATCCGCAGCTGGGTGGAGGTCTTCACGTCCACCGCCGTGGGCGT
CTTCATTGACAAGACCATCCACATCAACACCTACGATCAGATCTGCGCCGCTGCCACAAACCCGGCCTACGACTCCAAGC
TGCAAAAGCTTCTGGTGGCACTCTGCAGTGCTTCCGTCGAGACGTTGGTGAAGACCTCCCACGGCGTACTCTCCAATGGC
AATGGAAATGCTCACAGTGGCAATGGTGAGGTTGGGGAAGGATGGACAGAAACGGTCTCGAGTGCGCTTGCTGTTCCAAG
CAATCGGAAGCTTGTTCTGGATCTGACGGGCAGGGCGACATTCGAGGCAGTGCGGTCTTTCCTTGAGTTTGTGCTGTGGA
GGCTGCATGATGCTGCAAGGGCTGGCGGTGATGCCACAGCGAGGGCTGGATTGTGTGTCTTGAGGTATATGAGCGAAAGG
TCCATGGTTGTCGCTGCCATCTGCATAGTATTGTGCTTGCATGTGTTGAACCGCACATGGCTCTTGGCACCGGCTTGA--
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>chr2D_1_TraesCS2D01G257000
TGTGTCTAGAGTTGTGTTGTGATATCTTCTCATGAGTCCTGGTCTTGATCGTACACATTTGTATGTATGATTAGTGTACG
ATTGAATCGGGGGCGCCACAGTCTAGTCTACCTATGGTGTGTCCTCCCCTCTAAGGTCTCGCTTGGATAATCGACTCTTA
TGACCCACACAGAGGGTTTTTCCCAACCGTTCATACCTCTCGGCTATTAAATAAACCCAAATGATAATGCTCACACGTGT
GGCACAAAGCAATTTCGCCCACACGTTTTTTGATGACAACTTTAATTACAAGAGGATGACAACTTTACTTGTGAAGCATG
TC-AACTTTCTGTTTGGGTGACAAGTTTCAGTTTTTTGAGATTTG---TTTTTTTCCTGATGATAACTTTAGTGTAAAAA
ATATGTGGGCGGTGTTAATATATGCCACACGTGTGACAGTTATCGTC---GTAAATAAAATATTTAAAACAGACTTCACT
CGTCCCACGCCAAGGGAAAGGGATCCACGATCAATTCTACGGGAAAGTATCGAGTGCTCCCAGCCTTGGGGTACACCCGG
TGCTTCAATATCAAAAAATATTTTTAAATGTTTCAAAAAAATCCAAAAAAAAGTTGTAAATATTCACAAGGAATGTCATC
ACATCCTCTAAAAATTTCAGGTCCAAAATCGAAATGTACATTGAGAAACAAAAAAGAGAAATCTAGGTGTGAATAGTATC
AATGTTGCTTTTGTCTCTTCTTTACACTATTCATTCTAGATTTTTTTTTCTCAATGTTCGAGTTTGGACCTGAAATTTTT
AAGGCTTGTCACATCCATTGTGATCATTCACATTTTGTTTTGGATTTTTTGAAACATTCAAAATATTTTTTTTGACATTG
ATGTATCGGGAGTACACTGAGAGCACCGGATACTTTCCCCGATTCTACTCCACGCGCCACGTAGTCTCGTGTTCAGACTA
CCACTGGTCCTCGCGAATTCCCCATCCGAACCCCGATTCCGGCCGCCATGAACTGCGTCCCCACCTTCTCCCGCCACCAC
CGCCGCTGGATCGTCTGTGCGGGCGCTGCTGCTGGTGCTTACCTGATCTACCACCACCCAGCCGTCGCCGCCCGCCGCCG
CCGCTTCTCCCGCCTGGCCTCGGCTCTCTCGTCCCTCGCCGATGCCGTCGCCGCCGTCGCCTCCGACCTCGCGGCCTTTC
TCCAATCTGACTCCGACTCGCTGCCTACCACTCTCACTCAACTATCCAAGCTCGCCTCCTCCCACGAGGCGACCGCCTCC
GCCTCCGCGCTCTCCGGGGCCCTCACCGCCGGCGTGCTCCGCGGCTACGCCTCCGTCACCAGTCCAGCTTCCGCAGGCGA
GGTAGCGTTTTCGGATCGTCTTGTTGAGAAGCTGTTCTCCCCAGCCGGCGAGCGGCTCGTCTCAGCCGTGGCGGGCAGCT
TCGGGCGCGACATCGTGCTCGCCTGTTATTCTGTCCCAGCCGATCCTTCAGGATCGGCGGGATCATCACCGGCGAGCTGG
GTAGACATTGTCACCAGTGGGAGTTGCCGTAGGGCGATCCGCAGCTGGGTGGAGGTCTTCACGTCCACCGCCGTGGGCGT
CTTCATTGACAAGACCATCCACATCAACACCTACGATCAGATCTGCGCCGCTGCCACAAACCCGGCCTACGACTCCAAGC
TGCAAAAGCTTCTGGTGGCACTCTGCAGTGCTTCCGTCGAGACGTTGGTGAAGACCTCCCACGGCGTACTCTCCAATGGC
AATGGAAATGCTCACAGTGGCAATGGTGAGGTTGGGGAAGGATGGACAGAAACGGTCTCGAGTGCGCTTGCTGTTCCAAG
CAATCGGAAGCTTGTTCTGGATCTGACGGGCAGGGCGACATTCGAGGCAGTGCGGTCTTTCCTTGAGTTTGTGCTGTGGA
GGCTGCATGATGCTGCAAGGGCTGGCGGTGATGCCACAGCGAGGGCTGGATTGTGTGTCTTGAGGTATATGAGCGAAAGG
TCCATGGTTGTCGCTGCCATCTGCATAGTATTGTGCTTGCATGTGTTGAACCGCACATGGCTCTTGGCACCGGCTTGAGC
TTGAGCTTTA---CTTGAGTAGAGAATATACTGAAACTGAAGTGTTCAGAAAGGGGGAGGGGCAACAGAAACAATAAGTT
TGGTCACTTGTAAATATATTTGTTGTGTAACAATTTGACCCTGCATACAGTTTATAGAAATTTCTGGCAGTGTAACTTTG
CCTGCTTATTTCTAATTCTGTTGGTCAGTTATATTTCCACTGTGTAAATATGTGATTGTAGTGAGATGGTGATTCTATTG
TGTTACAATACTGTCGCACAATTTTAAAATCTGCTCGGATCAGCAAGTTAAGTTTTCAACGGAAGTTTAGAAGATTTTGA
TCGTCTAGGTAATCTCACCTGTTTCGTACATGATCCGTTTTATCCAATTGCTTGCTCAACTTGCTTATCCTTATCGACAT
TCAGAATGTTCCT-------TTTTGTGTGTGCCAACAGATTGATCGAGTAAATATCAGTATAGATTTTGCGTTTCTTCAT
TTACTCTGTATGTACTGAAG-----------AACAATCAGACAAAGGTGTTAATGCTTCATGGCCTGCCTCTAGTTCGCT
TTTTGAGGAATTCTTCAGTTTCTTCCCGTATTCGTATAATTATTGCACGGGAAAATGATCTGTTGATTCATTGGTTAAAA
GTGACGATCCTTGTTTGGGAGTACTGGAAGGGTTCTGTATCCAGAGTAACTTCGTAATGGTTTCGCTAATTCTTAGTCGA
CTAAAATTTAACTAAGTCCTAGTCGACTCACAATGGGATACATGATGCAAGGAGAGGCCGGTTTTCCTGGTTTCTTTTTT
TAGTTTAGTCCTTAATCCCCTTATGTCTATTAACCTACGTTTTTGTGTTAAGTTAAAAA--AAAAACTACATTCTTGTGT
TCCTCCCTCTCGATGCCGCCGCCTGTCATGTTTCCTCCGCACGTGTTCCTGCCTTGCGCCGCCGCCTATCGTTGTTCCGT
CGCCTCTCTTCCTCTGCCTTGACTGTCAGTTCCCTCCCTCCCGTCGCCGGTCGGTTAGTTC
>chr2A_112
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-------------------------------CTATGGTGTGTCCTCCTCTCTAAGGTCTTGCTTAGATAATTGACTCCTA
CGACCCACACAGAGGGTTTTTCCCAACCATTCAGACCTCTCGGCTATTAAATAAACCCAAATGATAACGCATACACGTAT
GACACGAAGCAATTTCGCCCACACTTTTTTATGATAAT--TTTAATTATAAGAGGATGACAACTTTAGTTGTGAAGCATG
TCTAACTTTCTGTTTGGATGACAAGTTTCAGTTTTTTTAAAACT----TTTTTTTCTAGATGACAATTTTAATGTAAAAA
AACGT-----------CTACAT-----CATGTGTGACAGTTATCGGTGTAGTAAATAAAAGATTTAAAACAGACTTCTCT
CATCCCACGCCAAGGGACAGGGATCCACGGT-------------------------------------------------
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--------------------------------------CCGATTCTACTCCACGCGCCACGTAGTCTCGTGTTCAGACTA
CCACTGGTCCTGGCGAATTCCCCATCCGAACCCCGACTCCGGCCGCCATGAACTGCGTCCCCACCTTCTCCCGCCGCCAC
CGCCGCTGGATCGTCTGTGCGGGCGCTGCTGCTGGTGCTTACCTGATCTACCACCACCCAGCCGTCGCCGCCCGCTGCCG
CCGCATCTCCCGCCTGGCCTCGGCTCTCTCGTCCCTCGCCGATGCCGTCGCCGCCGTCGCCTCCGACCTCGCGGCCTTTC
TCCAATCTGGCTCGGACTCACTGCCTACCACTCTCACTCAACTATCCAAGCTCGCCTCCGCCCACGAGGCAACCGCCTCC
GCCTCCGCGCTGTCCGGGGCCCTCACCGCCGGCGTGCTCCGCGGCTACGCCTCCGCCACCAATCCAGCTTCCGGAGGCGA
GGTAGCGTTTTCGGATCGTCTTGTTGAGAAGCTGTTCTCCCCAGCCGGCGAGCGGCTCGTCTCAGCCGTGGCGGGCACCT
TCGGGCGCGACATCGTCCTCGCCTGTTATTCTGTCCCAGCCGATCCTTCAGGATCGGCGGGATCATCGAGGGCGAGCTGG
GTAGACGTGGTCACCAGTGGGAGTTGCCGTAGGGCGATCCGCAGCTGGGTGGAGGTCTTCACGGCCACCGCCGTGGGCGT
CTTCATTGACAAGACCATCCACATCAACACCTACGATCAGATCTGCGCCGCTGCCACAAACCCGGCCTACGACTCCAAGC
TGCAAAAGCTTCTGGTGGCACTCTGCAGTGCTTCCGTCGAGACGTTGGTGAAGACCTCCCACGGCGTACTCTCCAATGGC
AATGGAAATGCTCACAGTGGCAATGGTGAGGTTGGGGAAGGATGGACAGAAACGGTCTCGAGTGCGCTTGCTGTTCCAAG
CAACCGGAAGCTTGTTCTGGATCTGACGGGCAGGGCGACATTAGAGGCTGTGCGGTCTTTCCTTGAGTTCGTGCTGTGGA
GGCTGCATGAGGCTGCAAGGGCTGGCGGTGATGCCACAGCGAGGGCTGGATTGTGTGCCTTGAGGTATATGAGCGAAAGG
TCCATGGTTGTCGCTGCCATCTGCATAGTATTGTGCTTGCATGTGTTGAACCGCACATGGCTCTTGGCACCGGCTTGAGC
TTGAGCTTTAGTACTTGGGTAGAGAATATACTGAAACTGAAGT--TCAGAAAGGG-GAAGGGCAACAGAAACAATAAGTT
TGGTCACTTGTAAATATATTTGTTGTGTAACAATTTAACCCTGCATACAGTTTATAGTAATTTCTGGCAATATCGGTGAG
TTTACTATAAACTGTAACTAG-----------------------------------------------------------
--------------------ATTGGTAAGTTTAATCAGACTAGATTGGTAAGTTTAACCTTGT-----------------
---------------------------------------------------------AAGTTGTTCATCCTTATAAGTTT
ACCGATATTTACTCGATCAATTTTGTGTGTGCCAACAGATTGATCGAGTAAATATCGGTATAGATTTTGCGTTTCTTCAT
TTACTCTGTATGTACTGAAGAATCACTGATGAACAATCAGACAAAGGTGTTAATGCTTCATGGCCTGCCTCTAGTTCGCC
TTTTGAGGAATTCTTCTGTTTCATCACGTATT------------------------------------------------
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>chr2B_113
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--------------------------------TATGGTGTGTCCTCCCCTCTAAGGTCTCGGTTGGATAATCGACTCTCA
TGACCCACATAGAGGGTTTTTCCCAACCGTTCATTCCTCTCGGCTATTAAATAAATTCAAATGATAACGCTCACACGTGT
GGCGCAAAGCAATTCCGCCCACACTTTTA-TGACGGCAACTTTAAATACAAAAGGATGGCAACTTTATTTGTGAAGCATG
TC-AACTTTCTGTTTGGATTATAAGTTTCAGTTTTTTGAGATTTGTTGTTTTTTTTCGAATGACAACTTTAATGTAAAAA
ACGTGTGGGTGTGTTACTGCAT-----TGCGTGTGACACTTATTGTC---GTAAATGAATACTTTAAAACAGACTTCACT
GGTCCCACGCCAAGGGACAGGGATCCACGGT-------------------------------------------------
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--------------------------------------CCGATTCTACTCCACGCGCCACGTAGTCTCGTGTTCAGACTA
CCACTGGTCCTGGCGAATTCCCCATCCGAACCCCGACTCCGGCCGCCATGAACTGCGTCCCCACCTTCTCCCGCCGCCAC
CGCCGCTGGATCGTCTGTGCGGGCGCTGCTGGTGGTGCTTACCTGATCTACCACCACCCAGCCGTCGCCGCCCGCCGCCG
CCGCATCTCCCGCATGGCCTCGGCTCTCTCGTCCCTGGCCGATGCCGTCGCCGCCGTCGCCTCCGACCTCGCGTCCTTTC
TCCAATCAGACTCGGACTCACTGCCTACCACTCTCACGCAACTATCCAAGCTCGCCTCCTCCCACGAGGCTACCGCCTCC
GCCTCCGCGCTCTCCGGGGCCCTCACCGCCGGCGTGCTCCGCGGCTACGCCTCCGCCACCAGTCCAGCTTCCGGAGGCGA
GGTAGCGTTTTCGGATCGTCTTGTTGAGAAGCTGTTCTCCCCAGCCGGCGAGCGGCTCGTCTCAGCCGTGGCGGGCAGCT
TCGGGCGCGACATCGTGCTCGCCTGTTATTCTGTCCCAGCCGATCCTTCAGGATCGGCGGGATCATCGCCGGCGAGCTGG
GTAGACGTGGTCACCAGTGGGAGTTGCCGTAGGGCGATCCGAAGCTGGGTGGAGGTCTTCACGGCCACCGCCGTGGGCGT
CTTCATTGACAAGACCATCCACATCAACACCTACGATCAGATCTGCGCCGCTGCCACAAACCCGGCCTACGACTCCAAGC
TGCAAAAGCTTCTGGTGGCACTCTGCAGTGCTTCCGTCGAGACGTTGGTGAAGACCTCCCACGGCGTACTCTCCAATGGC
AATGGAAATGCTCACAGTGGCAATGGTGAGGTTGGGGAAGGATGGACAGAAACGGTCTCGAGTGCGCTTGCTGTTCCAAG
CAACCGGAAGCTTGTTCTGGATCTGACGGGCAGGGCGACATTCGAGGCCGTGCGGTCTTTCCTTGAGTTTGTGCTGTGGA
GGCTGCATGATGCTGCAAGGGCTGGCGGCGATGCCACAGCGAGGGCTGGATTGTGTGTCTTGAGGTATATGAGCGAAAGG
TCCATGGTTGTCGCTGCAATCTGCATAGTATTGTGCTTGCATGTGTTGAACCGCACATGGCTCTCGGCACCGGCTTGAGC
TCGAGCTTTA---CTTGAGTAGAGAATATACTGAAACTGAAGT--TCAGAAAGGGGGAGGGGCAACAGAAACAATATGTT
TGATCACTTGTAAATATATTTGTTGTGTAACAATTTGACCCTGCATACAGTTTATAGAAATTTCTGGCAGTGTAACTTTG
CCTGCTTATTTCTAATTCTGTTGGTCAGTTATATTTCCACTGTGTAAATATGTGATTGTAGTGAGATGGTGATTCTATTT
TGTTACAATACTGTAGCACAATTTTAAAATCTGCTCGGATCAGCAAGTTAAGTTTTCAACGGAAGTTTAGAAGATTTTGA
TCGTCTAGGTAATCTCACCTGTTTCGTACATGATCCGTTTTATCCAATTGCTTGCTCAACTTGCTTATCCTTATCGACAT
TCAGAATGTTCCT-------TTTTGTGTGTGCCAACAGATTGATCGAGTAAATATCAGTATAAATTTTGCGTTTCTTCAT
TTACTCTGTATGTACTGAAGAATCACTGAAGAACAATCAGACAAAGGTGTTAATGCTCCATGGCCTGCCTCTAGTTCGCT
TTTTGAGGAATTCTTCCGTTTCTTCCCGTATTCGTATAATTATTGCACGGGGAAATTATCTGTTGATTCATTGGTTAAAA
GTGACGATCCTTGTTTGGGAGTGCTGGAAGGGTTCTGTATCCAGAGTAACTCCGTAATGGTTTTGCTAATTCTTAGTCGA
CTGAAATTTAACTAAGTCCTGGTCGACTCATAAAGGGATACATGATGCAAGGAGAGGCCGGTTTTCCTGGTTTCTTTTTT
TACTTTAGTCCTTAATCCCCTTATGTCTATTAACCTACGTTTTTGTGTTAAGTTCAAAAAAAAAAACTACATTCTTGTGT
TCCTCCCTCTCGATGCCGCCGCCTGTCATGTTTCCTCCGCACGTGTTCCTGCCTTGCGCCGCCGCCTATCGTTGTTCCGT
CGCCTCTCTTCCTCTGCCTTGACTGTCAGTTCCCTCCCTCCCGTCGCCAGTCGGTTAGTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
-------------------------------------------------------------------S------------
------------------------S--------S---------------------------------S------------
-----------------S---------------------------------------S-----S-------S--------
-SS------S-SSS-SSSSSSSSSSSS---------------------------------S-------------------
-----------------S-----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
-----------S------------------------S--------------------------------------S----
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----S---------------------------------------------------------------------------
-------------S-----S--------------------------------------------------S---------
-------------------------------------------------------S-----------------S------
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------S-S------------------------------------------------------S----------------
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---S--------------------------------------------S-------------------------------
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-------------------------------------------SS-----------------------------------
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-------------------------------------------------------------------------------S
--------------S-----------------------------------------------------------------
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----------------S----------------------------------S----S-----------------------
----------------------S----------------------------S-----------S----------------
--S-----------------S---------S--S----------------------------------------------
--S---------------------------------------------------S-------------------------
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------------------------------------------------S------------
>forward_905
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-----TCGGGAGTACACTGAGAGCA-------------------------------------------------------
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>reverse_1889
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------------------------------------------------AGTGCGGTCTTTCCTTGAGT------------
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>forward_906
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------CGGGAGTACACTGAGAGCAC------------------------------------------------------
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>reverse_2124
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-------------------------------------------GTTCAGAAAGGGGGAGGGG------------------
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